HEADER OXIDOREDUCTASE 16-JAN-97 1DFG TITLE X-RAY STRUCTURE OF ESCHERICHIA COLI ENOYL REDUCTASE WITH BOUND NAD AND TITLE 2 BENZO-DIAZABORINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL ACYL CARRIER PROTEIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENR; COMPND 5 EC: 1.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PENVM5 KEYWDS OXIDOREDUCTASE, LIPID BIOSYNTHESIS, DIAZABORINE EXPDTA X-RAY DIFFRACTION AUTHOR C.BALDOCK,J.B.RAFFERTY,D.W.RICE REVDAT 5 03-APR-24 1DFG 1 REMARK REVDAT 4 07-FEB-24 1DFG 1 REMARK LINK REVDAT 3 13-JUL-11 1DFG 1 VERSN REVDAT 2 24-FEB-09 1DFG 1 VERSN REVDAT 1 28-JAN-98 1DFG 0 JRNL AUTH C.BALDOCK,J.B.RAFFERTY,S.E.SEDELNIKOVA,P.J.BAKER, JRNL AUTH 2 A.R.STUITJE,A.R.SLABAS,T.R.HAWKES,D.W.RICE JRNL TITL A MECHANISM OF DRUG ACTION REVEALED BY STRUCTURAL STUDIES OF JRNL TITL 2 ENOYL REDUCTASE. JRNL REF SCIENCE V. 274 2107 1996 JRNL REFN ISSN 0036-8075 JRNL PMID 8953047 JRNL DOI 10.1126/SCIENCE.274.5295.2107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.BALDOCK,J.B.RAFFERTY,S.E.SEDELNIKOVA,S.BITHELL, REMARK 1 AUTH 2 A.R.STUITJE,A.R.SLABAS,D.W.RICE REMARK 1 TITL CRYSTALLIZATION OF ESCHERICHIA COLI ENOYL REDUCTASE AND ITS REMARK 1 TITL 2 COMPLEX WITH DIAZABORINE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 52 1181 1996 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 20204 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1730 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 20204 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 25.500 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.014 ; 2.000 ; 4006 REMARK 3 BOND ANGLES (DEGREES) : 1.448 ; 3.000 ; 5404 REMARK 3 TORSION ANGLES (DEGREES) : 16.463; 0.000 ; 2344 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.010 ; 4.000 ; 86 REMARK 3 GENERAL PLANES (A) : 0.015 ; 9.000 ; 592 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.368 ; 0.000 ; 46 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.85 REMARK 3 BSOL : 212.4 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH AND HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 INITIALLY THE NAD AND BENZO-DIAZABORINE WERE REFINED INDEPENDENTLY REMARK 3 AND NOT RESTRAINED BY THE COVALENT BOND BETWEEN THEM. AFTER TWO REMARK 3 CYCLES OF REFINEMENT IT WAS CLEAR THAT THEY WERE BOUND COVALENTLY REMARK 3 AND THIS RESTRAINT WAS ADDED. REMARK 3 REMARK 3 ASN A 155, ASN A 157, ASN B 155, ASN B 157 ARE THE RESIDUES REMARK 3 EITHER SIDE OF THE CATALYTIC TYROSINE AND HAVE DIHEDRAL REMARK 3 ANGLES WHICH LIE OUTSIDE THEIR EXPECTED RANGE. THIS IS REMARK 3 THOUGHT TO ALLOW THE TYROSINE SIDE-CHAIN TO OCCUPY THE REMARK 3 CORRECT POSITION WITH RESPECT TO THE POSITION OF THE REMARK 3 NICOTINAMIDE RING. REMARK 4 REMARK 4 1DFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-95 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AGROVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20393 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 23.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.09700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: E. COLI ENR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 400, PH5.0 100MM ACETATE, 5MM REMARK 280 NAD, 5MM 1,2-DIHYDRO-1-HYDROXY-2- (4-METHYLSULPHONYL)BENZO[E][1, REMARK 280 2,3]DIAZABORINE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.43333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 216.86667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 162.65000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 271.08333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.21667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.43333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 216.86667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 271.08333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 162.65000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.21667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 40.30000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 69.80165 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 271.08333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 259 REMARK 465 GLU A 260 REMARK 465 LEU A 261 REMARK 465 LYS A 262 REMARK 465 LEU B 259 REMARK 465 GLU B 260 REMARK 465 LEU B 261 REMARK 465 LYS B 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 ARG B 204 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 205 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASP A 101 NZ LYS A 201 1.91 REMARK 500 CB ASP A 101 CE LYS A 201 1.95 REMARK 500 NH1 ARG B 8 OE1 GLU B 34 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 10 C VAL A 11 N 0.245 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 13 O - C - N ANGL. DEV. = -20.8 DEGREES REMARK 500 ALA A 95 CA - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 ALA A 95 O - C - N ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG B 8 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLY B 13 O - C - N ANGL. DEV. = -16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 63 114.33 -162.86 REMARK 500 SER A 145 -169.77 -109.77 REMARK 500 ASN A 155 -18.43 66.79 REMARK 500 ASN A 157 -117.22 42.25 REMARK 500 ALA A 196 -158.14 -51.87 REMARK 500 VAL B 65 5.19 -68.55 REMARK 500 SER B 121 -56.57 -126.38 REMARK 500 ASN B 155 -22.13 70.31 REMARK 500 ASN B 157 -126.97 35.43 REMARK 500 ALA B 196 -167.22 -46.49 REMARK 500 ASP B 248 22.76 -148.73 REMARK 500 ASN B 257 -6.02 -52.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 13 -23.62 REMARK 500 GLY A 56 -11.58 REMARK 500 ILE B 9 -12.71 REMARK 500 GLY B 13 -17.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDT A 0 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDT B 0 DBREF 1DFG A 2 262 UNP P29132 FABI_ECOLI 1 261 DBREF 1DFG B 2 262 UNP P29132 FABI_ECOLI 1 261 SEQRES 1 A 261 GLY PHE LEU SER GLY LYS ARG ILE LEU VAL THR GLY VAL SEQRES 2 A 261 ALA SER LYS LEU SER ILE ALA TYR GLY ILE ALA GLN ALA SEQRES 3 A 261 MET HIS ARG GLU GLY ALA GLU LEU ALA PHE THR TYR GLN SEQRES 4 A 261 ASN ASP LYS LEU LYS GLY ARG VAL GLU GLU PHE ALA ALA SEQRES 5 A 261 GLN LEU GLY SER ASP ILE VAL LEU GLN CYS ASP VAL ALA SEQRES 6 A 261 GLU ASP ALA SER ILE ASP THR MET PHE ALA GLU LEU GLY SEQRES 7 A 261 LYS VAL TRP PRO LYS PHE ASP GLY PHE VAL HIS SER ILE SEQRES 8 A 261 GLY PHE ALA PRO GLY ASP GLN LEU ASP GLY ASP TYR VAL SEQRES 9 A 261 ASN ALA VAL THR ARG GLU GLY PHE LYS ILE ALA HIS ASP SEQRES 10 A 261 ILE SER SER TYR SER PHE VAL ALA MET ALA LYS ALA CYS SEQRES 11 A 261 ARG SER MET LEU ASN PRO GLY SER ALA LEU LEU THR LEU SEQRES 12 A 261 SER TYR LEU GLY ALA GLU ARG ALA ILE PRO ASN TYR ASN SEQRES 13 A 261 VAL MET GLY LEU ALA LYS ALA SER LEU GLU ALA ASN VAL SEQRES 14 A 261 ARG TYR MET ALA ASN ALA MET GLY PRO GLU GLY VAL ARG SEQRES 15 A 261 VAL ASN ALA ILE SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 A 261 ALA SER GLY ILE LYS ASP PHE ARG LYS MET LEU ALA HIS SEQRES 17 A 261 CYS GLU ALA VAL THR PRO ILE ARG ARG THR VAL THR ILE SEQRES 18 A 261 GLU ASP VAL GLY ASN SER ALA ALA PHE LEU CYS SER ASP SEQRES 19 A 261 LEU SER ALA GLY ILE SER GLY GLU VAL VAL HIS VAL ASP SEQRES 20 A 261 GLY GLY PHE SER ILE ALA ALA MET ASN GLU LEU GLU LEU SEQRES 21 A 261 LYS SEQRES 1 B 261 GLY PHE LEU SER GLY LYS ARG ILE LEU VAL THR GLY VAL SEQRES 2 B 261 ALA SER LYS LEU SER ILE ALA TYR GLY ILE ALA GLN ALA SEQRES 3 B 261 MET HIS ARG GLU GLY ALA GLU LEU ALA PHE THR TYR GLN SEQRES 4 B 261 ASN ASP LYS LEU LYS GLY ARG VAL GLU GLU PHE ALA ALA SEQRES 5 B 261 GLN LEU GLY SER ASP ILE VAL LEU GLN CYS ASP VAL ALA SEQRES 6 B 261 GLU ASP ALA SER ILE ASP THR MET PHE ALA GLU LEU GLY SEQRES 7 B 261 LYS VAL TRP PRO LYS PHE ASP GLY PHE VAL HIS SER ILE SEQRES 8 B 261 GLY PHE ALA PRO GLY ASP GLN LEU ASP GLY ASP TYR VAL SEQRES 9 B 261 ASN ALA VAL THR ARG GLU GLY PHE LYS ILE ALA HIS ASP SEQRES 10 B 261 ILE SER SER TYR SER PHE VAL ALA MET ALA LYS ALA CYS SEQRES 11 B 261 ARG SER MET LEU ASN PRO GLY SER ALA LEU LEU THR LEU SEQRES 12 B 261 SER TYR LEU GLY ALA GLU ARG ALA ILE PRO ASN TYR ASN SEQRES 13 B 261 VAL MET GLY LEU ALA LYS ALA SER LEU GLU ALA ASN VAL SEQRES 14 B 261 ARG TYR MET ALA ASN ALA MET GLY PRO GLU GLY VAL ARG SEQRES 15 B 261 VAL ASN ALA ILE SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 B 261 ALA SER GLY ILE LYS ASP PHE ARG LYS MET LEU ALA HIS SEQRES 17 B 261 CYS GLU ALA VAL THR PRO ILE ARG ARG THR VAL THR ILE SEQRES 18 B 261 GLU ASP VAL GLY ASN SER ALA ALA PHE LEU CYS SER ASP SEQRES 19 B 261 LEU SER ALA GLY ILE SER GLY GLU VAL VAL HIS VAL ASP SEQRES 20 B 261 GLY GLY PHE SER ILE ALA ALA MET ASN GLU LEU GLU LEU SEQRES 21 B 261 LYS HET NAD A 501 44 HET NDT A 0 21 HET NAD B 501 44 HET NDT B 0 21 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM NDT 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ- HETNAM 2 NDT 1-OL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 NDT 2(C14 H13 B N2 O3 S) HELIX 1 1 ILE A 20 ARG A 30 1 11 HELIX 2 2 ASP A 42 GLN A 54 5 13 HELIX 3 3 ASP A 68 VAL A 81 1 14 HELIX 4 4 GLY A 97 LEU A 100 5 4 HELIX 5 5 TYR A 104 ALA A 107 1 4 HELIX 6 6 ARG A 110 SER A 120 1 11 HELIX 7 7 TYR A 122 MET A 134 1 13 HELIX 8 8 LEU A 147 ALA A 149 5 3 HELIX 9 9 ASN A 157 GLU A 180 5 24 HELIX 10 10 PHE A 203 VAL A 213 1 11 HELIX 11 11 ILE A 222 CYS A 233 1 12 HELIX 12 12 ASP A 235 SER A 237 5 3 HELIX 13 13 PHE A 251 ILE A 253 5 3 HELIX 14 14 ILE B 20 ARG B 30 1 11 HELIX 15 15 ASP B 42 LEU B 55 1 14 HELIX 16 16 ASP B 68 VAL B 81 1 14 HELIX 17 17 GLY B 97 LEU B 100 5 4 HELIX 18 18 TYR B 104 ALA B 107 1 4 HELIX 19 19 ARG B 110 SER B 120 1 11 HELIX 20 20 TYR B 122 MET B 134 1 13 HELIX 21 21 LEU B 147 ALA B 149 5 3 HELIX 22 22 ASN B 157 GLU B 180 1 24 HELIX 23 23 PHE B 203 VAL B 213 1 11 HELIX 24 24 ILE B 222 CYS B 233 1 12 HELIX 25 25 ASP B 235 SER B 237 5 3 HELIX 26 26 PHE B 251 ILE B 253 5 3 SHEET 1 A 3 ARG A 8 VAL A 11 0 SHEET 2 A 3 GLU A 34 TYR A 39 1 N GLU A 34 O ILE A 9 SHEET 3 A 3 VAL A 60 GLN A 62 1 N LEU A 61 O PHE A 37 SHEET 1 B 4 GLY A 87 HIS A 90 0 SHEET 2 B 4 SER A 139 TYR A 146 1 N ALA A 140 O PHE A 88 SHEET 3 B 4 VAL A 182 ALA A 189 1 N ARG A 183 O SER A 139 SHEET 4 B 4 GLU A 243 VAL A 247 1 N GLU A 243 O ALA A 186 SHEET 1 C 3 ARG B 8 VAL B 11 0 SHEET 2 C 3 GLU B 34 TYR B 39 1 N GLU B 34 O ILE B 9 SHEET 3 C 3 VAL B 60 GLN B 62 1 N LEU B 61 O PHE B 37 SHEET 1 D 4 GLY B 87 HIS B 90 0 SHEET 2 D 4 ALA B 140 SER B 145 1 N ALA B 140 O PHE B 88 SHEET 3 D 4 ARG B 183 ALA B 189 1 N ARG B 183 O LEU B 141 SHEET 4 D 4 VAL B 244 VAL B 247 1 N VAL B 245 O ALA B 186 LINK B1 NDT A 0 O2D NAD A 501 1555 1555 1.37 LINK B1 NDT B 0 O2D NAD B 501 1555 1555 1.53 SITE 1 AC1 17 NDT A 0 GLY A 13 ALA A 15 SER A 19 SITE 2 AC1 17 ILE A 20 GLN A 40 CYS A 63 ASP A 64 SITE 3 AC1 17 VAL A 65 SER A 91 ILE A 92 SER A 145 SITE 4 AC1 17 LYS A 163 ALA A 189 GLY A 190 PRO A 191 SITE 5 AC1 17 ILE A 192 SITE 1 AC2 10 GLY A 93 PHE A 94 ALA A 95 LEU A 100 SITE 2 AC2 10 TYR A 146 TYR A 156 MET A 159 LYS A 163 SITE 3 AC2 10 ILE A 200 NAD A 501 SITE 1 AC3 20 NDT B 0 GLY B 13 VAL B 14 ALA B 15 SITE 2 AC3 20 SER B 19 ILE B 20 GLN B 40 CYS B 63 SITE 3 AC3 20 ASP B 64 VAL B 65 SER B 91 ILE B 92 SITE 4 AC3 20 GLY B 93 LEU B 144 SER B 145 LYS B 163 SITE 5 AC3 20 ALA B 189 GLY B 190 PRO B 191 ILE B 192 SITE 1 AC4 8 GLY B 93 PHE B 94 ALA B 95 LEU B 100 SITE 2 AC4 8 TYR B 156 MET B 159 LYS B 163 NAD B 501 CRYST1 80.600 80.600 325.300 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012407 0.007163 0.000000 0.00000 SCALE2 0.000000 0.014326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003074 0.00000 MTRIX1 1 -0.642000 0.620000 -0.452000 39.01000 1 MTRIX2 1 0.619000 0.070000 -0.782000 145.59000 1 MTRIX3 1 -0.453000 -0.782000 -0.428000 229.89999 1 CONECT 3803 3804 3805 3806 3825 CONECT 3804 3803 CONECT 3805 3803 CONECT 3806 3803 3807 CONECT 3807 3806 3808 CONECT 3808 3807 3809 3810 CONECT 3809 3808 3814 CONECT 3810 3808 3811 3812 CONECT 3811 3810 CONECT 3812 3810 3813 3814 CONECT 3813 3812 CONECT 3814 3809 3812 3815 CONECT 3815 3814 3816 3824 CONECT 3816 3815 3817 CONECT 3817 3816 3818 CONECT 3818 3817 3819 3824 CONECT 3819 3818 3820 3821 CONECT 3820 3819 CONECT 3821 3819 3822 CONECT 3822 3821 3823 CONECT 3823 3822 3824 CONECT 3824 3815 3818 3823 CONECT 3825 3803 3826 CONECT 3826 3825 3827 3828 3829 CONECT 3827 3826 CONECT 3828 3826 CONECT 3829 3826 3830 CONECT 3830 3829 3831 CONECT 3831 3830 3832 3833 CONECT 3832 3831 3837 CONECT 3833 3831 3834 3835 CONECT 3834 3833 CONECT 3835 3833 3836 3837 CONECT 3836 3835 3856 CONECT 3837 3832 3835 3838 CONECT 3838 3837 3839 3846 CONECT 3839 3838 3840 CONECT 3840 3839 3841 3844 CONECT 3841 3840 3842 3843 CONECT 3842 3841 CONECT 3843 3841 CONECT 3844 3840 3845 CONECT 3845 3844 3846 CONECT 3846 3838 3845 CONECT 3847 3848 3852 3853 CONECT 3848 3847 3849 3856 CONECT 3849 3848 3850 CONECT 3850 3849 3851 CONECT 3851 3850 3852 CONECT 3852 3847 3851 CONECT 3853 3847 3854 CONECT 3854 3853 3855 CONECT 3855 3854 3856 3858 CONECT 3856 3836 3848 3855 3857 CONECT 3857 3856 CONECT 3858 3855 3859 3860 3861 CONECT 3859 3858 CONECT 3860 3858 CONECT 3861 3858 3862 3866 CONECT 3862 3861 3863 CONECT 3863 3862 3864 CONECT 3864 3863 3865 3867 CONECT 3865 3864 3866 CONECT 3866 3861 3865 CONECT 3867 3864 CONECT 3868 3869 3870 3871 3890 CONECT 3869 3868 CONECT 3870 3868 CONECT 3871 3868 3872 CONECT 3872 3871 3873 CONECT 3873 3872 3874 3875 CONECT 3874 3873 3879 CONECT 3875 3873 3876 3877 CONECT 3876 3875 CONECT 3877 3875 3878 3879 CONECT 3878 3877 CONECT 3879 3874 3877 3880 CONECT 3880 3879 3881 3889 CONECT 3881 3880 3882 CONECT 3882 3881 3883 CONECT 3883 3882 3884 3889 CONECT 3884 3883 3885 3886 CONECT 3885 3884 CONECT 3886 3884 3887 CONECT 3887 3886 3888 CONECT 3888 3887 3889 CONECT 3889 3880 3883 3888 CONECT 3890 3868 3891 CONECT 3891 3890 3892 3893 3894 CONECT 3892 3891 CONECT 3893 3891 CONECT 3894 3891 3895 CONECT 3895 3894 3896 CONECT 3896 3895 3897 3898 CONECT 3897 3896 3902 CONECT 3898 3896 3899 3900 CONECT 3899 3898 CONECT 3900 3898 3901 3902 CONECT 3901 3900 3921 CONECT 3902 3897 3900 3903 CONECT 3903 3902 3904 3911 CONECT 3904 3903 3905 CONECT 3905 3904 3906 3909 CONECT 3906 3905 3907 3908 CONECT 3907 3906 CONECT 3908 3906 CONECT 3909 3905 3910 CONECT 3910 3909 3911 CONECT 3911 3903 3910 CONECT 3912 3913 3917 3918 CONECT 3913 3912 3914 3921 CONECT 3914 3913 3915 CONECT 3915 3914 3916 CONECT 3916 3915 3917 CONECT 3917 3912 3916 CONECT 3918 3912 3919 CONECT 3919 3918 3920 CONECT 3920 3919 3921 3923 CONECT 3921 3901 3913 3920 3922 CONECT 3922 3921 CONECT 3923 3920 3924 3925 3926 CONECT 3924 3923 CONECT 3925 3923 CONECT 3926 3923 3927 3931 CONECT 3927 3926 3928 CONECT 3928 3927 3929 CONECT 3929 3928 3930 3932 CONECT 3930 3929 3931 CONECT 3931 3926 3930 CONECT 3932 3929 MASTER 375 0 4 26 14 0 15 9 3930 2 130 42 END