HEADER OXIDOREDUCTASE 16-JAN-97 1DFI TITLE X-RAY STRUCTURE OF ESCHERICHIA COLI ENOYL REDUCTASE WITH BOUND NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL ACYL CARRIER PROTEIN REDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ENR; COMPND 5 EC: 1.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PENVM5 KEYWDS OXIDOREDUCTASE, LIPID BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR C.BALDOCK,J.B.RAFFERTY,D.W.RICE REVDAT 4 22-MAY-24 1DFI 1 REMARK REVDAT 3 09-AUG-23 1DFI 1 REMARK REVDAT 2 24-FEB-09 1DFI 1 VERSN REVDAT 1 28-JAN-98 1DFI 0 JRNL AUTH C.BALDOCK,J.B.RAFFERTY,S.E.SEDELNIKOVA,P.J.BAKER, JRNL AUTH 2 A.R.STUITJE,A.R.SLABAS,T.R.HAWKES,D.W.RICE JRNL TITL A MECHANISM OF DRUG ACTION REVEALED BY STRUCTURAL STUDIES OF JRNL TITL 2 ENOYL REDUCTASE. JRNL REF SCIENCE V. 274 2107 1996 JRNL REFN ISSN 0036-8075 JRNL PMID 8953047 JRNL DOI 10.1126/SCIENCE.274.5295.2107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.BALDOCK,J.B.RAFFERTY,S.E.SEDELNIKOVA,S.BITHELL, REMARK 1 AUTH 2 A.R.STUITJE,A.R.SLABAS,D.W.RICE REMARK 1 TITL CRYSTALLIZATION OF ESCHERICHIA COLI ENOYL REDUCTASE AND ITS REMARK 1 TITL 2 COMPLEX WITH DIAZABORINE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 52 1181 1996 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 52346 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1620 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 52346 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 176 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 33.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; 2.000 ; 7648 REMARK 3 BOND ANGLES (DEGREES) : 1.503 ; 3.000 ; 10336 REMARK 3 TORSION ANGLES (DEGREES) : 16.461; 0.000 ; 4504 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.012 ; 4.000 ; 168 REMARK 3 GENERAL PLANES (A) : 0.018 ; 9.000 ; 1128 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.188 ; 0.000 ; 77 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.85 REMARK 3 BSOL : 275.1 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH AND HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ASN A 155, ASN A 157, ASN B 155, ASN B 157 ARE THE RESIDUES REMARK 3 EITHER SIDE OF THE CATALYTIC TYROSINE AND HAVE DIHEDRAL REMARK 3 ANGLES WHICH LIE OUTSIDE THEIR EXPECTED RANGE. THIS IS REMARK 3 THOUGHT TO ALLOW THE TYROSINE SIDE-CHAIN TO OCCUPY THE REMARK 3 CORRECT POSITION WITH RESPECT TO THE POSITION OF THE REMARK 3 NICOTINAMIDE RING. REMARK 4 REMARK 4 1DFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-95 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX7.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AGROVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 26.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.10400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT AND REMARK 200 ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: BRASSICA NAPUS ENR (PDB ENTRY 1ENO) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 400, PH 5.0 ACETATE, 10MM NAD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.60000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 196 REMARK 465 ALA A 197 REMARK 465 SER A 198 REMARK 465 GLY A 199 REMARK 465 ILE A 200 REMARK 465 LYS A 201 REMARK 465 ASP A 202 REMARK 465 PHE A 203 REMARK 465 ARG A 204 REMARK 465 LYS A 205 REMARK 465 LEU A 259 REMARK 465 GLU A 260 REMARK 465 LEU A 261 REMARK 465 LYS A 262 REMARK 465 ALA B 196 REMARK 465 ALA B 197 REMARK 465 SER B 198 REMARK 465 GLY B 199 REMARK 465 ILE B 200 REMARK 465 LYS B 201 REMARK 465 ASP B 202 REMARK 465 PHE B 203 REMARK 465 ARG B 204 REMARK 465 LYS B 205 REMARK 465 LEU B 259 REMARK 465 GLU B 260 REMARK 465 LEU B 261 REMARK 465 LYS B 262 REMARK 465 ALA C 196 REMARK 465 ALA C 197 REMARK 465 SER C 198 REMARK 465 GLY C 199 REMARK 465 ILE C 200 REMARK 465 LYS C 201 REMARK 465 ASP C 202 REMARK 465 PHE C 203 REMARK 465 ARG C 204 REMARK 465 LYS C 205 REMARK 465 LEU C 259 REMARK 465 GLU C 260 REMARK 465 LEU C 261 REMARK 465 LYS C 262 REMARK 465 ALA D 196 REMARK 465 ALA D 197 REMARK 465 SER D 198 REMARK 465 GLY D 199 REMARK 465 ILE D 200 REMARK 465 LYS D 201 REMARK 465 ASP D 202 REMARK 465 PHE D 203 REMARK 465 ARG D 204 REMARK 465 LYS D 205 REMARK 465 LEU D 259 REMARK 465 GLU D 260 REMARK 465 LEU D 261 REMARK 465 LYS D 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N TYR A 156 O HOH A 581 1.69 REMARK 500 OH TYR C 22 OE1 GLN C 54 1.88 REMARK 500 NH2 ARG B 8 O HOH B 524 1.89 REMARK 500 O PRO A 154 O HOH A 581 2.02 REMARK 500 ND1 HIS C 29 O HOH C 553 2.03 REMARK 500 CD2 LEU D 61 OE2 GLU D 77 2.07 REMARK 500 NZ LYS B 163 O2D NAD B 501 2.09 REMARK 500 O3D NAD A 501 O HOH A 591 2.15 REMARK 500 NH2 ARG D 193 OE2 GLU D 211 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU C 10 C VAL C 11 N 0.146 REMARK 500 VAL D 11 C THR D 12 N -0.259 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLY B 13 O - C - N ANGL. DEV. = -19.0 DEGREES REMARK 500 GLY C 13 O - C - N ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG C 218 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 THR D 12 C - N - CA ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG D 193 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG D 218 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG D 218 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 45 -61.94 -29.96 REMARK 500 SER A 121 -52.23 -124.09 REMARK 500 ASN A 155 -20.07 65.24 REMARK 500 ASN A 157 -113.99 40.11 REMARK 500 VAL A 247 73.15 -119.90 REMARK 500 SER B 121 -50.82 -121.55 REMARK 500 ASN B 155 -13.30 71.68 REMARK 500 ASN B 157 -130.88 38.17 REMARK 500 VAL B 247 77.29 -115.68 REMARK 500 ASP B 248 21.90 -140.85 REMARK 500 LYS C 45 -48.57 -25.36 REMARK 500 ASN C 155 -11.30 65.56 REMARK 500 ASN C 157 -128.34 42.57 REMARK 500 ARG C 193 -73.84 -42.79 REMARK 500 THR C 194 -77.41 -30.05 REMARK 500 ASN C 257 15.67 -65.31 REMARK 500 ASN D 155 -23.39 73.93 REMARK 500 ASN D 157 -121.18 41.71 REMARK 500 VAL D 247 76.59 -119.94 REMARK 500 ASN D 257 45.14 -86.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 13 -24.96 REMARK 500 GLY C 13 -18.53 REMARK 500 GLU D 167 -10.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD D 501 DBREF 1DFI A 2 262 UNP P29132 FABI_ECOLI 1 261 DBREF 1DFI B 2 262 UNP P29132 FABI_ECOLI 1 261 DBREF 1DFI C 2 262 UNP P29132 FABI_ECOLI 1 261 DBREF 1DFI D 2 262 UNP P29132 FABI_ECOLI 1 261 SEQRES 1 A 261 GLY PHE LEU SER GLY LYS ARG ILE LEU VAL THR GLY VAL SEQRES 2 A 261 ALA SER LYS LEU SER ILE ALA TYR GLY ILE ALA GLN ALA SEQRES 3 A 261 MET HIS ARG GLU GLY ALA GLU LEU ALA PHE THR TYR GLN SEQRES 4 A 261 ASN ASP LYS LEU LYS GLY ARG VAL GLU GLU PHE ALA ALA SEQRES 5 A 261 GLN LEU GLY SER ASP ILE VAL LEU GLN CYS ASP VAL ALA SEQRES 6 A 261 GLU ASP ALA SER ILE ASP THR MET PHE ALA GLU LEU GLY SEQRES 7 A 261 LYS VAL TRP PRO LYS PHE ASP GLY PHE VAL HIS SER ILE SEQRES 8 A 261 GLY PHE ALA PRO GLY ASP GLN LEU ASP GLY ASP TYR VAL SEQRES 9 A 261 ASN ALA VAL THR ARG GLU GLY PHE LYS ILE ALA HIS ASP SEQRES 10 A 261 ILE SER SER TYR SER PHE VAL ALA MET ALA LYS ALA CYS SEQRES 11 A 261 ARG SER MET LEU ASN PRO GLY SER ALA LEU LEU THR LEU SEQRES 12 A 261 SER TYR LEU GLY ALA GLU ARG ALA ILE PRO ASN TYR ASN SEQRES 13 A 261 VAL MET GLY LEU ALA LYS ALA SER LEU GLU ALA ASN VAL SEQRES 14 A 261 ARG TYR MET ALA ASN ALA MET GLY PRO GLU GLY VAL ARG SEQRES 15 A 261 VAL ASN ALA ILE SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 A 261 ALA SER GLY ILE LYS ASP PHE ARG LYS MET LEU ALA HIS SEQRES 17 A 261 CYS GLU ALA VAL THR PRO ILE ARG ARG THR VAL THR ILE SEQRES 18 A 261 GLU ASP VAL GLY ASN SER ALA ALA PHE LEU CYS SER ASP SEQRES 19 A 261 LEU SER ALA GLY ILE SER GLY GLU VAL VAL HIS VAL ASP SEQRES 20 A 261 GLY GLY PHE SER ILE ALA ALA MET ASN GLU LEU GLU LEU SEQRES 21 A 261 LYS SEQRES 1 B 261 GLY PHE LEU SER GLY LYS ARG ILE LEU VAL THR GLY VAL SEQRES 2 B 261 ALA SER LYS LEU SER ILE ALA TYR GLY ILE ALA GLN ALA SEQRES 3 B 261 MET HIS ARG GLU GLY ALA GLU LEU ALA PHE THR TYR GLN SEQRES 4 B 261 ASN ASP LYS LEU LYS GLY ARG VAL GLU GLU PHE ALA ALA SEQRES 5 B 261 GLN LEU GLY SER ASP ILE VAL LEU GLN CYS ASP VAL ALA SEQRES 6 B 261 GLU ASP ALA SER ILE ASP THR MET PHE ALA GLU LEU GLY SEQRES 7 B 261 LYS VAL TRP PRO LYS PHE ASP GLY PHE VAL HIS SER ILE SEQRES 8 B 261 GLY PHE ALA PRO GLY ASP GLN LEU ASP GLY ASP TYR VAL SEQRES 9 B 261 ASN ALA VAL THR ARG GLU GLY PHE LYS ILE ALA HIS ASP SEQRES 10 B 261 ILE SER SER TYR SER PHE VAL ALA MET ALA LYS ALA CYS SEQRES 11 B 261 ARG SER MET LEU ASN PRO GLY SER ALA LEU LEU THR LEU SEQRES 12 B 261 SER TYR LEU GLY ALA GLU ARG ALA ILE PRO ASN TYR ASN SEQRES 13 B 261 VAL MET GLY LEU ALA LYS ALA SER LEU GLU ALA ASN VAL SEQRES 14 B 261 ARG TYR MET ALA ASN ALA MET GLY PRO GLU GLY VAL ARG SEQRES 15 B 261 VAL ASN ALA ILE SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 B 261 ALA SER GLY ILE LYS ASP PHE ARG LYS MET LEU ALA HIS SEQRES 17 B 261 CYS GLU ALA VAL THR PRO ILE ARG ARG THR VAL THR ILE SEQRES 18 B 261 GLU ASP VAL GLY ASN SER ALA ALA PHE LEU CYS SER ASP SEQRES 19 B 261 LEU SER ALA GLY ILE SER GLY GLU VAL VAL HIS VAL ASP SEQRES 20 B 261 GLY GLY PHE SER ILE ALA ALA MET ASN GLU LEU GLU LEU SEQRES 21 B 261 LYS SEQRES 1 C 261 GLY PHE LEU SER GLY LYS ARG ILE LEU VAL THR GLY VAL SEQRES 2 C 261 ALA SER LYS LEU SER ILE ALA TYR GLY ILE ALA GLN ALA SEQRES 3 C 261 MET HIS ARG GLU GLY ALA GLU LEU ALA PHE THR TYR GLN SEQRES 4 C 261 ASN ASP LYS LEU LYS GLY ARG VAL GLU GLU PHE ALA ALA SEQRES 5 C 261 GLN LEU GLY SER ASP ILE VAL LEU GLN CYS ASP VAL ALA SEQRES 6 C 261 GLU ASP ALA SER ILE ASP THR MET PHE ALA GLU LEU GLY SEQRES 7 C 261 LYS VAL TRP PRO LYS PHE ASP GLY PHE VAL HIS SER ILE SEQRES 8 C 261 GLY PHE ALA PRO GLY ASP GLN LEU ASP GLY ASP TYR VAL SEQRES 9 C 261 ASN ALA VAL THR ARG GLU GLY PHE LYS ILE ALA HIS ASP SEQRES 10 C 261 ILE SER SER TYR SER PHE VAL ALA MET ALA LYS ALA CYS SEQRES 11 C 261 ARG SER MET LEU ASN PRO GLY SER ALA LEU LEU THR LEU SEQRES 12 C 261 SER TYR LEU GLY ALA GLU ARG ALA ILE PRO ASN TYR ASN SEQRES 13 C 261 VAL MET GLY LEU ALA LYS ALA SER LEU GLU ALA ASN VAL SEQRES 14 C 261 ARG TYR MET ALA ASN ALA MET GLY PRO GLU GLY VAL ARG SEQRES 15 C 261 VAL ASN ALA ILE SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 C 261 ALA SER GLY ILE LYS ASP PHE ARG LYS MET LEU ALA HIS SEQRES 17 C 261 CYS GLU ALA VAL THR PRO ILE ARG ARG THR VAL THR ILE SEQRES 18 C 261 GLU ASP VAL GLY ASN SER ALA ALA PHE LEU CYS SER ASP SEQRES 19 C 261 LEU SER ALA GLY ILE SER GLY GLU VAL VAL HIS VAL ASP SEQRES 20 C 261 GLY GLY PHE SER ILE ALA ALA MET ASN GLU LEU GLU LEU SEQRES 21 C 261 LYS SEQRES 1 D 261 GLY PHE LEU SER GLY LYS ARG ILE LEU VAL THR GLY VAL SEQRES 2 D 261 ALA SER LYS LEU SER ILE ALA TYR GLY ILE ALA GLN ALA SEQRES 3 D 261 MET HIS ARG GLU GLY ALA GLU LEU ALA PHE THR TYR GLN SEQRES 4 D 261 ASN ASP LYS LEU LYS GLY ARG VAL GLU GLU PHE ALA ALA SEQRES 5 D 261 GLN LEU GLY SER ASP ILE VAL LEU GLN CYS ASP VAL ALA SEQRES 6 D 261 GLU ASP ALA SER ILE ASP THR MET PHE ALA GLU LEU GLY SEQRES 7 D 261 LYS VAL TRP PRO LYS PHE ASP GLY PHE VAL HIS SER ILE SEQRES 8 D 261 GLY PHE ALA PRO GLY ASP GLN LEU ASP GLY ASP TYR VAL SEQRES 9 D 261 ASN ALA VAL THR ARG GLU GLY PHE LYS ILE ALA HIS ASP SEQRES 10 D 261 ILE SER SER TYR SER PHE VAL ALA MET ALA LYS ALA CYS SEQRES 11 D 261 ARG SER MET LEU ASN PRO GLY SER ALA LEU LEU THR LEU SEQRES 12 D 261 SER TYR LEU GLY ALA GLU ARG ALA ILE PRO ASN TYR ASN SEQRES 13 D 261 VAL MET GLY LEU ALA LYS ALA SER LEU GLU ALA ASN VAL SEQRES 14 D 261 ARG TYR MET ALA ASN ALA MET GLY PRO GLU GLY VAL ARG SEQRES 15 D 261 VAL ASN ALA ILE SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 D 261 ALA SER GLY ILE LYS ASP PHE ARG LYS MET LEU ALA HIS SEQRES 17 D 261 CYS GLU ALA VAL THR PRO ILE ARG ARG THR VAL THR ILE SEQRES 18 D 261 GLU ASP VAL GLY ASN SER ALA ALA PHE LEU CYS SER ASP SEQRES 19 D 261 LEU SER ALA GLY ILE SER GLY GLU VAL VAL HIS VAL ASP SEQRES 20 D 261 GLY GLY PHE SER ILE ALA ALA MET ASN GLU LEU GLU LEU SEQRES 21 D 261 LYS HET NAD A 501 44 HET NAD B 501 44 HET NAD C 501 44 HET NAD D 501 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 5 NAD 4(C21 H27 N7 O14 P2) FORMUL 9 HOH *327(H2 O) HELIX 1 1 ILE A 20 ARG A 30 1 11 HELIX 2 2 LYS A 45 LEU A 55 1 11 HELIX 3 3 ASP A 68 VAL A 81 1 14 HELIX 4 4 GLY A 97 LEU A 100 5 4 HELIX 5 5 TYR A 104 ALA A 107 1 4 HELIX 6 6 ARG A 110 SER A 120 1 11 HELIX 7 7 TYR A 122 MET A 134 1 13 HELIX 8 8 LEU A 147 ALA A 149 5 3 HELIX 9 9 ASN A 157 GLU A 180 5 24 HELIX 10 10 LEU A 207 VAL A 213 1 7 HELIX 11 11 ILE A 222 CYS A 233 1 12 HELIX 12 12 ASP A 235 SER A 237 5 3 HELIX 13 13 PHE A 251 ILE A 253 5 3 HELIX 14 14 ILE B 20 ARG B 30 1 11 HELIX 15 15 LYS B 45 LEU B 55 1 11 HELIX 16 16 ASP B 68 VAL B 81 1 14 HELIX 17 17 GLY B 97 LEU B 100 5 4 HELIX 18 18 TYR B 104 ALA B 107 1 4 HELIX 19 19 ARG B 110 SER B 120 1 11 HELIX 20 20 TYR B 122 MET B 134 1 13 HELIX 21 21 LEU B 147 ALA B 149 5 3 HELIX 22 22 ASN B 157 GLU B 180 1 24 HELIX 23 23 LEU B 207 VAL B 213 1 7 HELIX 24 24 ILE B 222 CYS B 233 1 12 HELIX 25 25 ASP B 235 SER B 237 5 3 HELIX 26 26 PHE B 251 ILE B 253 5 3 HELIX 27 27 ILE C 20 ARG C 30 1 11 HELIX 28 28 ASP C 42 LEU C 55 1 14 HELIX 29 29 ASP C 68 VAL C 81 1 14 HELIX 30 30 ASP C 98 LEU C 100 5 3 HELIX 31 31 TYR C 104 ALA C 107 1 4 HELIX 32 32 ARG C 110 SER C 120 1 11 HELIX 33 33 TYR C 122 MET C 134 1 13 HELIX 34 34 LEU C 147 ALA C 149 5 3 HELIX 35 35 ASN C 157 GLU C 180 5 24 HELIX 36 36 LEU C 207 VAL C 213 1 7 HELIX 37 37 ILE C 222 CYS C 233 1 12 HELIX 38 38 ASP C 235 SER C 237 5 3 HELIX 39 39 PHE C 251 ILE C 253 5 3 HELIX 40 40 ILE D 20 ARG D 30 1 11 HELIX 41 41 ASP D 42 GLN D 54 1 13 HELIX 42 42 ASP D 68 VAL D 81 1 14 HELIX 43 43 GLY D 97 LEU D 100 5 4 HELIX 44 44 TYR D 104 ALA D 107 1 4 HELIX 45 45 ARG D 110 SER D 120 1 11 HELIX 46 46 TYR D 122 MET D 134 1 13 HELIX 47 47 LEU D 147 ALA D 149 5 3 HELIX 48 48 ASN D 157 GLU D 180 1 24 HELIX 49 49 LEU D 207 VAL D 213 1 7 HELIX 50 50 ILE D 222 CYS D 233 1 12 HELIX 51 51 ASP D 235 SER D 237 5 3 HELIX 52 52 PHE D 251 ILE D 253 5 3 SHEET 1 A 3 ARG A 8 VAL A 11 0 SHEET 2 A 3 GLU A 34 TYR A 39 1 N GLU A 34 O ILE A 9 SHEET 3 A 3 VAL A 60 GLN A 62 1 N LEU A 61 O PHE A 37 SHEET 1 B 4 GLY A 87 HIS A 90 0 SHEET 2 B 4 ALA A 140 SER A 145 1 N ALA A 140 O PHE A 88 SHEET 3 B 4 ARG A 183 ALA A 189 1 N ARG A 183 O LEU A 141 SHEET 4 B 4 VAL A 244 VAL A 247 1 N VAL A 245 O ALA A 186 SHEET 1 C 3 ARG B 8 VAL B 11 0 SHEET 2 C 3 GLU B 34 TYR B 39 1 N GLU B 34 O ILE B 9 SHEET 3 C 3 VAL B 60 GLN B 62 1 N LEU B 61 O PHE B 37 SHEET 1 D 4 GLY B 87 HIS B 90 0 SHEET 2 D 4 ALA B 140 SER B 145 1 N ALA B 140 O PHE B 88 SHEET 3 D 4 ARG B 183 ALA B 189 1 N ARG B 183 O LEU B 141 SHEET 4 D 4 VAL B 244 VAL B 247 1 N VAL B 245 O ALA B 186 SHEET 1 E 3 ARG C 8 VAL C 11 0 SHEET 2 E 3 GLU C 34 TYR C 39 1 N GLU C 34 O ILE C 9 SHEET 3 E 3 VAL C 60 GLN C 62 1 N LEU C 61 O PHE C 37 SHEET 1 F 4 GLY C 87 HIS C 90 0 SHEET 2 F 4 ALA C 140 SER C 145 1 N ALA C 140 O PHE C 88 SHEET 3 F 4 ARG C 183 ALA C 189 1 N ARG C 183 O LEU C 141 SHEET 4 F 4 VAL C 244 VAL C 247 1 N VAL C 245 O ALA C 186 SHEET 1 G 3 ARG D 8 VAL D 11 0 SHEET 2 G 3 GLU D 34 TYR D 39 1 N GLU D 34 O ILE D 9 SHEET 3 G 3 VAL D 60 GLN D 62 1 N LEU D 61 O PHE D 37 SHEET 1 H 4 GLY D 87 HIS D 90 0 SHEET 2 H 4 ALA D 140 SER D 145 1 N ALA D 140 O PHE D 88 SHEET 3 H 4 ARG D 183 ALA D 189 1 N ARG D 183 O LEU D 141 SHEET 4 H 4 VAL D 244 VAL D 247 1 N VAL D 245 O ALA D 186 SITE 1 AC1 20 GLY A 13 VAL A 14 ALA A 15 SER A 19 SITE 2 AC1 20 ILE A 20 GLN A 40 CYS A 63 ASP A 64 SITE 3 AC1 20 VAL A 65 SER A 91 ILE A 92 LEU A 144 SITE 4 AC1 20 SER A 145 LYS A 163 ALA A 189 ILE A 192 SITE 5 AC1 20 LEU A 195 HOH A 539 HOH A 541 HOH A 591 SITE 1 AC2 17 GLY B 13 ALA B 15 SER B 19 ILE B 20 SITE 2 AC2 17 ALA B 21 GLN B 40 CYS B 63 ASP B 64 SITE 3 AC2 17 VAL B 65 SER B 91 ILE B 92 LEU B 144 SITE 4 AC2 17 SER B 145 LYS B 163 ALA B 189 GLY B 190 SITE 5 AC2 17 HOH B 528 SITE 1 AC3 20 GLY C 13 ALA C 15 ILE C 20 GLN C 40 SITE 2 AC3 20 CYS C 63 ASP C 64 VAL C 65 SER C 91 SITE 3 AC3 20 ILE C 92 GLY C 93 LEU C 144 SER C 145 SITE 4 AC3 20 LYS C 163 ALA C 189 GLY C 190 ILE C 192 SITE 5 AC3 20 LEU C 195 HOH C 512 HOH C 551 HOH C 580 SITE 1 AC4 21 GLY D 13 ALA D 15 SER D 19 ILE D 20 SITE 2 AC4 21 GLN D 40 CYS D 63 ASP D 64 VAL D 65 SITE 3 AC4 21 SER D 91 LEU D 144 SER D 145 LYS D 163 SITE 4 AC4 21 ALA D 189 GLY D 190 PRO D 191 ILE D 192 SITE 5 AC4 21 LEU D 195 HOH D 526 HOH D 535 HOH D 561 SITE 6 AC4 21 HOH D 564 CRYST1 74.000 81.200 79.000 90.00 92.90 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013514 0.000000 0.000685 0.00000 SCALE2 0.000000 0.012315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012674 0.00000 MTRIX1 1 0.795000 0.159000 -0.585000 14.51000 1 MTRIX2 1 0.158000 -0.986000 -0.053000 -0.98000 1 MTRIX3 1 -0.585000 -0.050000 -0.809000 44.24000 1 MTRIX1 2 -0.812000 0.025000 0.583000 19.05000 1 MTRIX2 2 0.018000 -0.997000 0.068000 -1.09000 1 MTRIX3 2 0.583000 0.066000 0.810000 -6.12000 1 MTRIX1 3 -0.984000 -0.175000 -0.001000 33.13000 1 MTRIX2 3 -0.175000 0.984000 -0.009000 3.10000 1 MTRIX3 3 0.002000 -0.008000 -1.000000 38.10000 1