HEADER METAL BINDING PROTEIN 20-NOV-99 1DFS TITLE SOLUTION STRUCTURE OF THE ALPHA-DOMAIN OF MOUSE METALLOTHIONEIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOTHIONEIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (ALPHA); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS 3-10 HELIX, CD-S CLUSTER, HALF TURN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR K.ZANGGER,G.OZ,J.D.OTVOS,I.M.ARMITAGE REVDAT 4 16-FEB-22 1DFS 1 REMARK LINK REVDAT 3 24-FEB-09 1DFS 1 VERSN REVDAT 2 10-JAN-00 1DFS 1 JRNL COMPND REVDAT 1 01-DEC-99 1DFS 0 JRNL AUTH K.ZANGGER,G.OZ,J.D.OTVOS,I.M.ARMITAGE JRNL TITL THREE-DIMENSIONAL SOLUTION STRUCTURE OF MOUSE JRNL TITL 2 [CD7]-METALLOTHIONEIN-1 BY HOMONUCLEAR AND HETERONUCLEAR NMR JRNL TITL 3 SPECTROSCOPY. JRNL REF PROTEIN SCI. V. 8 2630 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10631978 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1A, X-PLOR 3.851 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A TOTAL OF 278 NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS AND 16 CD-S CONNECTIVITIES REMARK 4 REMARK 4 1DFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000010045. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 15MMKPI; 15MMKPI REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM MOUSE-METALLOTHIONEIN-1, REMARK 210 NATURAL ABUNDANCE, 15MM REMARK 210 PHOSPHATE BUFFER NA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; ACCORDION CD REMARK 210 -H HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY REMARK 210 -DYNAMICAL SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES AND AN ACCORDION CD-H HSQC REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 1 N LYS A 1 CA 0.160 REMARK 500 LYS A 1 CA LYS A 1 CB 0.162 REMARK 500 SER A 2 N SER A 2 CA 0.166 REMARK 500 SER A 2 CA SER A 2 CB 0.111 REMARK 500 SER A 2 C CYS A 3 N 0.143 REMARK 500 CYS A 3 N CYS A 3 CA 0.182 REMARK 500 CYS A 3 CA CYS A 3 CB 0.158 REMARK 500 CYS A 4 N CYS A 4 CA 0.157 REMARK 500 CYS A 4 CA CYS A 4 CB 0.166 REMARK 500 SER A 5 N SER A 5 CA 0.174 REMARK 500 SER A 5 CA SER A 5 CB 0.100 REMARK 500 SER A 5 CA SER A 5 C 0.177 REMARK 500 CYS A 6 N CYS A 6 CA 0.179 REMARK 500 CYS A 6 CA CYS A 6 CB 0.149 REMARK 500 CYS A 7 N CYS A 7 CA 0.155 REMARK 500 CYS A 7 CA CYS A 7 CB 0.136 REMARK 500 CYS A 7 C PRO A 8 N 0.153 REMARK 500 PRO A 8 N PRO A 8 CA 0.141 REMARK 500 PRO A 8 CD PRO A 8 N 0.089 REMARK 500 PRO A 8 CA PRO A 8 C 0.170 REMARK 500 PRO A 8 C VAL A 9 N 0.140 REMARK 500 VAL A 9 N VAL A 9 CA 0.192 REMARK 500 VAL A 9 CA VAL A 9 CB 0.176 REMARK 500 GLY A 10 N GLY A 10 CA 0.127 REMARK 500 GLY A 10 CA GLY A 10 C 0.142 REMARK 500 CYS A 11 N CYS A 11 CA 0.209 REMARK 500 CYS A 11 CA CYS A 11 CB 0.164 REMARK 500 CYS A 11 CA CYS A 11 C 0.179 REMARK 500 SER A 12 N SER A 12 CA 0.167 REMARK 500 SER A 12 CA SER A 12 CB 0.104 REMARK 500 LYS A 13 N LYS A 13 CA 0.154 REMARK 500 CYS A 14 N CYS A 14 CA 0.151 REMARK 500 CYS A 14 CA CYS A 14 CB 0.147 REMARK 500 CYS A 14 CA CYS A 14 C 0.175 REMARK 500 ALA A 15 N ALA A 15 CA 0.196 REMARK 500 GLN A 16 N GLN A 16 CA 0.172 REMARK 500 GLY A 17 N GLY A 17 CA 0.146 REMARK 500 GLY A 17 CA GLY A 17 C 0.098 REMARK 500 CYS A 18 N CYS A 18 CA 0.186 REMARK 500 CYS A 18 CA CYS A 18 CB 0.141 REMARK 500 CYS A 18 CA CYS A 18 C 0.166 REMARK 500 VAL A 19 N VAL A 19 CA 0.168 REMARK 500 VAL A 19 CA VAL A 19 CB 0.187 REMARK 500 VAL A 19 CB VAL A 19 CG1 0.148 REMARK 500 VAL A 19 CA VAL A 19 C 0.157 REMARK 500 CYS A 20 N CYS A 20 CA 0.161 REMARK 500 CYS A 20 CA CYS A 20 CB 0.149 REMARK 500 LYS A 21 N LYS A 21 CA 0.177 REMARK 500 LYS A 21 CD LYS A 21 CE 0.158 REMARK 500 GLY A 22 N GLY A 22 CA 0.162 REMARK 500 REMARK 500 THIS ENTRY HAS 66 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 3 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 CYS A 6 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 CYS A 27 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -92.99 -119.00 REMARK 500 CYS A 3 -45.26 -145.51 REMARK 500 PRO A 8 38.59 -85.59 REMARK 500 VAL A 9 -64.17 70.59 REMARK 500 CYS A 11 171.01 -49.28 REMARK 500 ALA A 23 -48.03 72.73 REMARK 500 ASP A 25 -64.83 -135.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 33 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 CYS A 4 SG 112.7 REMARK 620 3 CYS A 14 SG 115.0 120.1 REMARK 620 4 CYS A 18 SG 94.1 100.6 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 35 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 CYS A 6 SG 105.5 REMARK 620 3 CYS A 7 SG 119.1 121.4 REMARK 620 4 CYS A 20 SG 97.2 99.7 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 34 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 11 SG 100.7 REMARK 620 3 CYS A 14 SG 115.0 121.4 REMARK 620 4 CYS A 30 SG 101.4 102.7 112.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 32 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 CYS A 27 SG 95.5 REMARK 620 3 CYS A 29 SG 103.1 115.5 REMARK 620 4 CYS A 30 SG 117.3 112.6 111.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 32 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 33 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 34 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 35 DBREF 1DFS A 1 31 UNP P02802 MT1_MOUSE 31 61 SEQRES 1 A 31 LYS SER CYS CYS SER CYS CYS PRO VAL GLY CYS SER LYS SEQRES 2 A 31 CYS ALA GLN GLY CYS VAL CYS LYS GLY ALA ALA ASP LYS SEQRES 3 A 31 CYS THR CYS CYS ALA HET CD A 32 1 HET CD A 33 1 HET CD A 34 1 HET CD A 35 1 HETNAM CD CADMIUM ION FORMUL 2 CD 4(CD 2+) LINK SG CYS A 3 CD CD A 33 1555 1555 2.55 LINK SG CYS A 4 CD CD A 33 1555 1555 2.53 LINK SG CYS A 4 CD CD A 35 1555 1555 2.52 LINK SG CYS A 6 CD CD A 35 1555 1555 2.53 LINK SG CYS A 7 CD CD A 34 1555 1555 2.52 LINK SG CYS A 7 CD CD A 35 1555 1555 2.53 LINK SG CYS A 11 CD CD A 34 1555 1555 2.57 LINK SG CYS A 14 CD CD A 33 1555 1555 2.56 LINK SG CYS A 14 CD CD A 34 1555 1555 2.58 LINK SG CYS A 18 CD CD A 33 1555 1555 2.52 LINK SG CYS A 20 CD CD A 32 1555 1555 2.52 LINK SG CYS A 20 CD CD A 35 1555 1555 2.49 LINK SG CYS A 27 CD CD A 32 1555 1555 2.52 LINK SG CYS A 29 CD CD A 32 1555 1555 2.53 LINK SG CYS A 30 CD CD A 32 1555 1555 2.54 LINK SG CYS A 30 CD CD A 34 1555 1555 2.55 SITE 1 AC1 4 CYS A 20 CYS A 27 CYS A 29 CYS A 30 SITE 1 AC2 4 CYS A 3 CYS A 4 CYS A 14 CYS A 18 SITE 1 AC3 4 CYS A 7 CYS A 11 CYS A 14 CYS A 30 SITE 1 AC4 4 CYS A 4 CYS A 6 CYS A 7 CYS A 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000