data_1DFV # _entry.id 1DFV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1DFV RCSB RCSB010048 WWPDB D_1000010048 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1qqs _pdbx_database_related.details 'Crystal Structure of Human Neutrophil Gelatinase Associated Lipocalin Homodimer' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DFV _pdbx_database_status.recvd_initial_deposition_date 1999-11-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Goetz, D.H.' 1 'Willie, S.T.' 2 'Armen, R.S.' 3 'Bratt, T.' 4 'Borregaard, N.' 5 'Strong, R.K.' 6 # _citation.id primary _citation.title 'Ligand preference inferred from the structure of neutrophil gelatinase associated lipocalin' _citation.journal_abbrev Biochemistry _citation.journal_volume 39 _citation.page_first 1935 _citation.page_last 1941 _citation.year 2000 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10684642 _citation.pdbx_database_id_DOI 10.1021/bi992215v # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Goetz, D.H.' 1 ? primary 'Willie, S.T.' 2 ? primary 'Armen, R.S.' 3 ? primary 'Bratt, T.' 4 ? primary 'Borregaard, N.' 5 ? primary 'Strong, R.K.' 6 ? # _cell.entry_id 1DFV _cell.length_a 115.021 _cell.length_b 115.021 _cell.length_c 117.638 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DFV _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HUMAN NEUTROPHIL GELATINASE' 20515.449 2 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 water nat water 18.015 133 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name NGAL # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWI RTFVPGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSLG LPENHIVFPVPIDQCID ; _entity_poly.pdbx_seq_one_letter_code_can ;QDSTSDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWI RTFVPGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSLG LPENHIVFPVPIDQCID ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ASP n 1 3 SER n 1 4 THR n 1 5 SER n 1 6 ASP n 1 7 LEU n 1 8 ILE n 1 9 PRO n 1 10 ALA n 1 11 PRO n 1 12 PRO n 1 13 LEU n 1 14 SER n 1 15 LYS n 1 16 VAL n 1 17 PRO n 1 18 LEU n 1 19 GLN n 1 20 GLN n 1 21 ASN n 1 22 PHE n 1 23 GLN n 1 24 ASP n 1 25 ASN n 1 26 GLN n 1 27 PHE n 1 28 GLN n 1 29 GLY n 1 30 LYS n 1 31 TRP n 1 32 TYR n 1 33 VAL n 1 34 VAL n 1 35 GLY n 1 36 LEU n 1 37 ALA n 1 38 GLY n 1 39 ASN n 1 40 ALA n 1 41 ILE n 1 42 LEU n 1 43 ARG n 1 44 GLU n 1 45 ASP n 1 46 LYS n 1 47 ASP n 1 48 PRO n 1 49 GLN n 1 50 LYS n 1 51 MET n 1 52 TYR n 1 53 ALA n 1 54 THR n 1 55 ILE n 1 56 TYR n 1 57 GLU n 1 58 LEU n 1 59 LYS n 1 60 GLU n 1 61 ASP n 1 62 LYS n 1 63 SER n 1 64 TYR n 1 65 ASN n 1 66 VAL n 1 67 THR n 1 68 SER n 1 69 VAL n 1 70 LEU n 1 71 PHE n 1 72 ARG n 1 73 LYS n 1 74 LYS n 1 75 LYS n 1 76 CYS n 1 77 ASP n 1 78 TYR n 1 79 TRP n 1 80 ILE n 1 81 ARG n 1 82 THR n 1 83 PHE n 1 84 VAL n 1 85 PRO n 1 86 GLY n 1 87 CYS n 1 88 GLN n 1 89 PRO n 1 90 GLY n 1 91 GLU n 1 92 PHE n 1 93 THR n 1 94 LEU n 1 95 GLY n 1 96 ASN n 1 97 ILE n 1 98 LYS n 1 99 SER n 1 100 TYR n 1 101 PRO n 1 102 GLY n 1 103 LEU n 1 104 THR n 1 105 SER n 1 106 TYR n 1 107 LEU n 1 108 VAL n 1 109 ARG n 1 110 VAL n 1 111 VAL n 1 112 SER n 1 113 THR n 1 114 ASN n 1 115 TYR n 1 116 ASN n 1 117 GLN n 1 118 HIS n 1 119 ALA n 1 120 MET n 1 121 VAL n 1 122 PHE n 1 123 PHE n 1 124 LYS n 1 125 LYS n 1 126 VAL n 1 127 SER n 1 128 GLN n 1 129 ASN n 1 130 ARG n 1 131 GLU n 1 132 TYR n 1 133 PHE n 1 134 LYS n 1 135 ILE n 1 136 THR n 1 137 LEU n 1 138 TYR n 1 139 GLY n 1 140 ARG n 1 141 THR n 1 142 LYS n 1 143 GLU n 1 144 LEU n 1 145 THR n 1 146 SER n 1 147 GLU n 1 148 LEU n 1 149 LYS n 1 150 GLU n 1 151 ASN n 1 152 PHE n 1 153 ILE n 1 154 ARG n 1 155 PHE n 1 156 SER n 1 157 LYS n 1 158 SER n 1 159 LEU n 1 160 GLY n 1 161 LEU n 1 162 PRO n 1 163 GLU n 1 164 ASN n 1 165 HIS n 1 166 ILE n 1 167 VAL n 1 168 PHE n 1 169 PRO n 1 170 VAL n 1 171 PRO n 1 172 ILE n 1 173 ASP n 1 174 GLN n 1 175 CYS n 1 176 ILE n 1 177 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'unidentified baculovirus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10469 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NGAL_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P80188 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DFV A 1 ? 177 ? P80188 21 ? 197 ? 1 177 2 1 1DFV B 1 ? 177 ? P80188 21 ? 197 ? 1 177 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DFV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.74 _exptl_crystal.density_percent_sol 74.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'PEG 8k, Ammonium Sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 1998-08-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength 0.98 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DFV _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20. _reflns.d_resolution_high 2.48 _reflns.number_obs 25147 _reflns.number_all 28608 _reflns.percent_possible_obs 87.9 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 43.8 _reflns.B_iso_Wilson_estimate 53.8 _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.48 _reflns_shell.d_res_low 2.52 _reflns_shell.percent_possible_all 60. _reflns_shell.Rmerge_I_obs 0.255 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1DFV _refine.ls_number_reflns_obs 21882 _refine.ls_number_reflns_all 24809 _refine.pdbx_ls_sigma_I 0. _refine.pdbx_ls_sigma_F 0. _refine.pdbx_data_cutoff_high_absF 846783.96 _refine.pdbx_data_cutoff_low_absF .00 _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 88.2 _refine.ls_R_factor_obs 0.281 _refine.ls_R_factor_all 0.281 _refine.ls_R_factor_R_work 0.281 _refine.ls_R_factor_R_free 0.293 _refine.ls_R_factor_R_free_error .006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 2144 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 46.8 _refine.aniso_B[1][1] .48 _refine.aniso_B[2][2] .48 _refine.aniso_B[3][3] -.96 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol .3621 _refine.solvent_model_param_bsol 56.14 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DFV _refine_analyze.Luzzati_coordinate_error_obs .39 _refine_analyze.Luzzati_sigma_a_obs .30 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .40 _refine_analyze.Luzzati_sigma_a_free .33 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2821 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 3011 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 28.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.03 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.81 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 4.23 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.51 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 6.16 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work 3233 _refine_ls_shell.R_factor_R_work 0.341 _refine_ls_shell.percent_reflns_obs 89.0 _refine_ls_shell.R_factor_R_free 0.359 _refine_ls_shell.R_factor_R_free_error .019 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 371 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PA PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARA WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 CARBOHYDRATE.P CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1DFV _struct.title 'CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL GELATINASE ASSOCIATED LIPOCALIN MONOMER' _struct.pdbx_descriptor 'HUMAN NEUTROPHIL GELATINASE ASSOCIATED LIPOCALIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DFV _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'NEUTROPHIL, NGAL, LIPOCALIN, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 5 ? # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? VAL A 16 ? PRO A 12 VAL A 16 5 ? 5 HELX_P HELX_P2 2 THR A 145 ? LEU A 159 ? THR A 145 LEU A 159 1 ? 15 HELX_P HELX_P3 3 PRO A 162 ? ASN A 164 ? PRO A 162 ASN A 164 5 ? 3 HELX_P HELX_P4 4 PRO B 12 ? VAL B 16 ? PRO B 12 VAL B 16 5 ? 5 HELX_P HELX_P5 5 THR B 145 ? LEU B 159 ? THR B 145 LEU B 159 1 ? 15 HELX_P HELX_P6 6 PRO B 162 ? ASN B 164 ? PRO B 162 ASN B 164 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 175 SG ? ? A CYS 76 A CYS 175 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? B CYS 76 SG ? ? ? 1_555 B CYS 175 SG ? ? B CYS 76 B CYS 175 1_555 ? ? ? ? ? ? ? 2.028 ? ? covale1 covale one ? A ASN 65 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 65 C NAG 1 1_555 ? ? ? ? ? ? ? 1.447 ? N-Glycosylation covale2 covale one ? B ASN 65 ND2 ? ? ? 1_555 F NAG . C1 ? ? B ASN 65 B NAG 178 1_555 ? ? ? ? ? ? ? 1.523 ? N-Glycosylation covale3 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.367 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A1 ? 2 ? A2 ? 11 ? B ? 12 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A1 1 2 ? anti-parallel A2 1 2 ? anti-parallel A2 2 3 ? anti-parallel A2 3 4 ? anti-parallel A2 4 5 ? anti-parallel A2 5 6 ? anti-parallel A2 6 7 ? anti-parallel A2 7 8 ? anti-parallel A2 8 9 ? anti-parallel A2 9 10 ? anti-parallel A2 10 11 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel B 10 11 ? anti-parallel B 11 12 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A1 1 ASP A 6 ? LEU A 7 ? ASP A 6 LEU A 7 A1 2 CYS B 76 ? PRO B 85 ? CYS B 76 PRO B 85 A2 1 ILE A 166 ? VAL A 167 ? ILE A 166 VAL A 167 A2 2 GLY A 29 ? GLY A 38 ? GLY A 29 GLY A 38 A2 3 ALA A 53 ? LEU A 58 ? ALA A 53 LEU A 58 A2 4 TYR A 64 ? PHE A 71 ? TYR A 64 PHE A 71 A2 5 CYS A 76 ? PRO A 85 ? CYS A 76 PRO A 85 A2 6 GLU A 91 ? LEU A 94 ? GLU A 91 LEU A 94 A2 7 LEU A 103 ? THR A 113 ? LEU A 103 THR A 113 A2 8 HIS A 118 ? SER A 127 ? HIS A 118 SER A 127 A2 9 ARG A 130 ? GLY A 139 ? ARG A 130 GLY A 139 A2 10 GLY A 29 ? GLY A 38 ? GLY A 29 GLY A 38 A2 11 ARG A 130 ? GLY A 139 ? ARG A 130 GLY A 139 B 1 ASP A 6 ? LEU A 7 ? ASP A 6 LEU A 7 B 2 CYS B 76 ? PRO B 85 ? CYS B 76 PRO B 85 B 3 GLU B 91 ? LEU B 94 ? GLU B 91 LEU B 94 B 4 LEU B 103 ? THR B 113 ? LEU B 103 THR B 113 B 5 HIS B 118 ? SER B 127 ? HIS B 118 SER B 127 B 6 ARG B 130 ? GLY B 139 ? ARG B 130 GLY B 139 B 7 GLY B 29 ? GLY B 38 ? GLY B 29 GLY B 38 B 8 ILE B 166 ? VAL B 167 ? ILE B 166 VAL B 167 B 9 GLY B 29 ? GLY B 38 ? GLY B 29 GLY B 38 B 10 ALA B 53 ? LEU B 58 ? ALA B 53 LEU B 58 B 11 TYR B 64 ? PHE B 71 ? TYR B 64 PHE B 71 B 12 CYS B 76 ? PRO B 85 ? CYS B 76 PRO B 85 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A1 1 2 O LEU A 7 ? O LEU A 7 N CYS B 76 ? N CYS B 76 A2 1 2 N VAL A 167 ? N VAL A 167 O LEU A 36 ? O LEU A 36 A2 2 3 O TRP A 31 ? O TRP A 31 N THR A 54 ? N THR A 54 A2 3 4 O GLU A 57 ? O GLU A 57 N ASN A 65 ? N ASN A 65 A2 4 5 O LEU A 70 ? O LEU A 70 N ASP A 77 ? N ASP A 77 A2 5 6 N VAL A 84 ? N VAL A 84 O THR A 93 ? O THR A 93 A2 6 7 N LEU A 94 ? N LEU A 94 O TYR A 106 ? O TYR A 106 A2 7 8 O SER A 112 ? O SER A 112 N MET A 120 ? N MET A 120 A2 8 9 O SER A 127 ? O SER A 127 N ARG A 130 ? N ARG A 130 A2 9 10 O GLY A 139 ? O GLY A 139 N TYR A 32 ? N TYR A 32 A2 10 11 O ALA A 37 ? O ALA A 37 N ILE A 135 ? N ILE A 135 B 1 2 O LEU A 7 ? O LEU A 7 N CYS B 76 ? N CYS B 76 B 2 3 N VAL B 84 ? N VAL B 84 O THR B 93 ? O THR B 93 B 3 4 N LEU B 94 ? N LEU B 94 O TYR B 106 ? O TYR B 106 B 4 5 O SER B 112 ? O SER B 112 N MET B 120 ? N MET B 120 B 5 6 O SER B 127 ? O SER B 127 N ARG B 130 ? N ARG B 130 B 6 7 O GLY B 139 ? O GLY B 139 N TYR B 32 ? N TYR B 32 B 7 8 O LEU B 36 ? O LEU B 36 N VAL B 167 ? N VAL B 167 B 8 9 N VAL B 167 ? N VAL B 167 O LEU B 36 ? O LEU B 36 B 9 10 O TRP B 31 ? O TRP B 31 N THR B 54 ? N THR B 54 B 10 11 O GLU B 57 ? O GLU B 57 N ASN B 65 ? N ASN B 65 B 11 12 O LEU B 70 ? O LEU B 70 N ASP B 77 ? N ASP B 77 # _database_PDB_matrix.entry_id 1DFV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _atom_sites.entry_id 1DFV _atom_sites.fract_transf_matrix[1][1] .008694 _atom_sites.fract_transf_matrix[1][2] .000000 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .008694 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .008501 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'NAG B 178 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 MET 51 51 51 MET MET A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 CYS 87 87 87 CYS CYS A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 HIS 118 118 118 HIS HIS A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 MET 120 120 120 MET MET A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 ASN 129 129 129 ASN ASN A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 TYR 138 138 138 TYR TYR A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 PRO 162 162 162 PRO PRO A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 HIS 165 165 165 HIS HIS A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 GLN 174 174 174 GLN GLN A . n A 1 175 CYS 175 175 175 CYS CYS A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 ASP 177 177 177 ASP ASP A . n B 1 1 GLN 1 1 ? ? ? B . n B 1 2 ASP 2 2 ? ? ? B . n B 1 3 SER 3 3 ? ? ? B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 ASP 6 6 6 ASP ASP B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 PRO 11 11 11 PRO PRO B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 PRO 17 17 17 PRO PRO B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 GLN 19 19 19 GLN GLN B . n B 1 20 GLN 20 20 20 GLN GLN B . n B 1 21 ASN 21 21 21 ASN ASN B . n B 1 22 PHE 22 22 22 PHE PHE B . n B 1 23 GLN 23 23 23 GLN GLN B . n B 1 24 ASP 24 24 24 ASP ASP B . n B 1 25 ASN 25 25 25 ASN ASN B . n B 1 26 GLN 26 26 26 GLN GLN B . n B 1 27 PHE 27 27 27 PHE PHE B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 TRP 31 31 31 TRP TRP B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 LEU 36 36 36 LEU LEU B . n B 1 37 ALA 37 37 37 ALA ALA B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 ASN 39 39 39 ASN ASN B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 ILE 41 41 41 ILE ILE B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 ARG 43 43 43 ARG ARG B . n B 1 44 GLU 44 44 44 GLU GLU B . n B 1 45 ASP 45 45 45 ASP ASP B . n B 1 46 LYS 46 46 46 LYS LYS B . n B 1 47 ASP 47 47 47 ASP ASP B . n B 1 48 PRO 48 48 48 PRO PRO B . n B 1 49 GLN 49 49 49 GLN GLN B . n B 1 50 LYS 50 50 50 LYS LYS B . n B 1 51 MET 51 51 51 MET MET B . n B 1 52 TYR 52 52 52 TYR TYR B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 THR 54 54 54 THR THR B . n B 1 55 ILE 55 55 55 ILE ILE B . n B 1 56 TYR 56 56 56 TYR TYR B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 LYS 59 59 59 LYS LYS B . n B 1 60 GLU 60 60 60 GLU GLU B . n B 1 61 ASP 61 61 61 ASP ASP B . n B 1 62 LYS 62 62 62 LYS LYS B . n B 1 63 SER 63 63 63 SER SER B . n B 1 64 TYR 64 64 64 TYR TYR B . n B 1 65 ASN 65 65 65 ASN ASN B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 THR 67 67 67 THR THR B . n B 1 68 SER 68 68 68 SER SER B . n B 1 69 VAL 69 69 69 VAL VAL B . n B 1 70 LEU 70 70 70 LEU LEU B . n B 1 71 PHE 71 71 71 PHE PHE B . n B 1 72 ARG 72 72 72 ARG ARG B . n B 1 73 LYS 73 73 73 LYS LYS B . n B 1 74 LYS 74 74 74 LYS LYS B . n B 1 75 LYS 75 75 75 LYS LYS B . n B 1 76 CYS 76 76 76 CYS CYS B . n B 1 77 ASP 77 77 77 ASP ASP B . n B 1 78 TYR 78 78 78 TYR TYR B . n B 1 79 TRP 79 79 79 TRP TRP B . n B 1 80 ILE 80 80 80 ILE ILE B . n B 1 81 ARG 81 81 81 ARG ARG B . n B 1 82 THR 82 82 82 THR THR B . n B 1 83 PHE 83 83 83 PHE PHE B . n B 1 84 VAL 84 84 84 VAL VAL B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 CYS 87 87 87 CYS CYS B . n B 1 88 GLN 88 88 88 GLN GLN B . n B 1 89 PRO 89 89 89 PRO PRO B . n B 1 90 GLY 90 90 90 GLY GLY B . n B 1 91 GLU 91 91 91 GLU GLU B . n B 1 92 PHE 92 92 92 PHE PHE B . n B 1 93 THR 93 93 93 THR THR B . n B 1 94 LEU 94 94 94 LEU LEU B . n B 1 95 GLY 95 95 95 GLY GLY B . n B 1 96 ASN 96 96 96 ASN ASN B . n B 1 97 ILE 97 97 97 ILE ILE B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 SER 99 99 99 SER SER B . n B 1 100 TYR 100 100 100 TYR TYR B . n B 1 101 PRO 101 101 101 PRO PRO B . n B 1 102 GLY 102 102 102 GLY GLY B . n B 1 103 LEU 103 103 103 LEU LEU B . n B 1 104 THR 104 104 104 THR THR B . n B 1 105 SER 105 105 105 SER SER B . n B 1 106 TYR 106 106 106 TYR TYR B . n B 1 107 LEU 107 107 107 LEU LEU B . n B 1 108 VAL 108 108 108 VAL VAL B . n B 1 109 ARG 109 109 109 ARG ARG B . n B 1 110 VAL 110 110 110 VAL VAL B . n B 1 111 VAL 111 111 111 VAL VAL B . n B 1 112 SER 112 112 112 SER SER B . n B 1 113 THR 113 113 113 THR THR B . n B 1 114 ASN 114 114 114 ASN ASN B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 ASN 116 116 116 ASN ASN B . n B 1 117 GLN 117 117 117 GLN GLN B . n B 1 118 HIS 118 118 118 HIS HIS B . n B 1 119 ALA 119 119 119 ALA ALA B . n B 1 120 MET 120 120 120 MET MET B . n B 1 121 VAL 121 121 121 VAL VAL B . n B 1 122 PHE 122 122 122 PHE PHE B . n B 1 123 PHE 123 123 123 PHE PHE B . n B 1 124 LYS 124 124 124 LYS LYS B . n B 1 125 LYS 125 125 125 LYS LYS B . n B 1 126 VAL 126 126 126 VAL VAL B . n B 1 127 SER 127 127 127 SER SER B . n B 1 128 GLN 128 128 128 GLN GLN B . n B 1 129 ASN 129 129 129 ASN ASN B . n B 1 130 ARG 130 130 130 ARG ARG B . n B 1 131 GLU 131 131 131 GLU GLU B . n B 1 132 TYR 132 132 132 TYR TYR B . n B 1 133 PHE 133 133 133 PHE PHE B . n B 1 134 LYS 134 134 134 LYS LYS B . n B 1 135 ILE 135 135 135 ILE ILE B . n B 1 136 THR 136 136 136 THR THR B . n B 1 137 LEU 137 137 137 LEU LEU B . n B 1 138 TYR 138 138 138 TYR TYR B . n B 1 139 GLY 139 139 139 GLY GLY B . n B 1 140 ARG 140 140 140 ARG ARG B . n B 1 141 THR 141 141 141 THR THR B . n B 1 142 LYS 142 142 142 LYS LYS B . n B 1 143 GLU 143 143 143 GLU GLU B . n B 1 144 LEU 144 144 144 LEU LEU B . n B 1 145 THR 145 145 145 THR THR B . n B 1 146 SER 146 146 146 SER SER B . n B 1 147 GLU 147 147 147 GLU GLU B . n B 1 148 LEU 148 148 148 LEU LEU B . n B 1 149 LYS 149 149 149 LYS LYS B . n B 1 150 GLU 150 150 150 GLU GLU B . n B 1 151 ASN 151 151 151 ASN ASN B . n B 1 152 PHE 152 152 152 PHE PHE B . n B 1 153 ILE 153 153 153 ILE ILE B . n B 1 154 ARG 154 154 154 ARG ARG B . n B 1 155 PHE 155 155 155 PHE PHE B . n B 1 156 SER 156 156 156 SER SER B . n B 1 157 LYS 157 157 157 LYS LYS B . n B 1 158 SER 158 158 158 SER SER B . n B 1 159 LEU 159 159 159 LEU LEU B . n B 1 160 GLY 160 160 160 GLY GLY B . n B 1 161 LEU 161 161 161 LEU LEU B . n B 1 162 PRO 162 162 162 PRO PRO B . n B 1 163 GLU 163 163 163 GLU GLU B . n B 1 164 ASN 164 164 164 ASN ASN B . n B 1 165 HIS 165 165 165 HIS HIS B . n B 1 166 ILE 166 166 166 ILE ILE B . n B 1 167 VAL 167 167 167 VAL VAL B . n B 1 168 PHE 168 168 168 PHE PHE B . n B 1 169 PRO 169 169 169 PRO PRO B . n B 1 170 VAL 170 170 170 VAL VAL B . n B 1 171 PRO 171 171 171 PRO PRO B . n B 1 172 ILE 172 172 172 ILE ILE B . n B 1 173 ASP 173 173 173 ASP ASP B . n B 1 174 GLN 174 174 174 GLN GLN B . n B 1 175 CYS 175 175 175 CYS CYS B . n B 1 176 ILE 176 176 176 ILE ILE B . n B 1 177 ASP 177 177 177 ASP ASP B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SO4 1 181 181 SO4 SO4 A . E 3 SO4 1 183 183 SO4 SO4 A . F 4 NAG 1 178 178 NAG NAG B . G 3 SO4 1 182 182 SO4 SO4 B . H 5 HOH 1 184 1 HOH HOH A . H 5 HOH 2 185 12 HOH HOH A . H 5 HOH 3 186 13 HOH HOH A . H 5 HOH 4 187 19 HOH HOH A . H 5 HOH 5 188 20 HOH HOH A . H 5 HOH 6 189 21 HOH HOH A . H 5 HOH 7 190 23 HOH HOH A . H 5 HOH 8 191 31 HOH HOH A . H 5 HOH 9 192 32 HOH HOH A . H 5 HOH 10 193 34 HOH HOH A . H 5 HOH 11 194 39 HOH HOH A . H 5 HOH 12 195 49 HOH HOH A . H 5 HOH 13 196 51 HOH HOH A . H 5 HOH 14 197 52 HOH HOH A . H 5 HOH 15 198 53 HOH HOH A . H 5 HOH 16 199 55 HOH HOH A . H 5 HOH 17 200 56 HOH HOH A . H 5 HOH 18 201 57 HOH HOH A . H 5 HOH 19 202 58 HOH HOH A . H 5 HOH 20 203 59 HOH HOH A . H 5 HOH 21 204 60 HOH HOH A . H 5 HOH 22 205 62 HOH HOH A . H 5 HOH 23 206 63 HOH HOH A . H 5 HOH 24 207 64 HOH HOH A . H 5 HOH 25 208 65 HOH HOH A . H 5 HOH 26 209 66 HOH HOH A . H 5 HOH 27 210 67 HOH HOH A . H 5 HOH 28 211 68 HOH HOH A . H 5 HOH 29 212 69 HOH HOH A . H 5 HOH 30 213 70 HOH HOH A . H 5 HOH 31 214 99 HOH HOH A . H 5 HOH 32 215 105 HOH HOH A . H 5 HOH 33 216 106 HOH HOH A . H 5 HOH 34 217 109 HOH HOH A . H 5 HOH 35 218 110 HOH HOH A . H 5 HOH 36 219 112 HOH HOH A . H 5 HOH 37 220 114 HOH HOH A . H 5 HOH 38 221 115 HOH HOH A . H 5 HOH 39 222 117 HOH HOH A . H 5 HOH 40 223 119 HOH HOH A . H 5 HOH 41 224 124 HOH HOH A . H 5 HOH 42 225 126 HOH HOH A . H 5 HOH 43 226 127 HOH HOH A . H 5 HOH 44 227 130 HOH HOH A . H 5 HOH 45 228 131 HOH HOH A . H 5 HOH 46 229 135 HOH HOH A . H 5 HOH 47 230 136 HOH HOH A . H 5 HOH 48 231 137 HOH HOH A . H 5 HOH 49 232 140 HOH HOH A . H 5 HOH 50 233 141 HOH HOH A . H 5 HOH 51 234 142 HOH HOH A . H 5 HOH 52 235 145 HOH HOH A . I 5 HOH 1 183 2 HOH HOH B . I 5 HOH 2 184 3 HOH HOH B . I 5 HOH 3 185 4 HOH HOH B . I 5 HOH 4 186 5 HOH HOH B . I 5 HOH 5 187 7 HOH HOH B . I 5 HOH 6 188 10 HOH HOH B . I 5 HOH 7 189 11 HOH HOH B . I 5 HOH 8 190 14 HOH HOH B . I 5 HOH 9 191 15 HOH HOH B . I 5 HOH 10 192 16 HOH HOH B . I 5 HOH 11 193 17 HOH HOH B . I 5 HOH 12 194 18 HOH HOH B . I 5 HOH 13 195 22 HOH HOH B . I 5 HOH 14 196 24 HOH HOH B . I 5 HOH 15 197 25 HOH HOH B . I 5 HOH 16 198 26 HOH HOH B . I 5 HOH 17 199 27 HOH HOH B . I 5 HOH 18 200 28 HOH HOH B . I 5 HOH 19 201 29 HOH HOH B . I 5 HOH 20 202 30 HOH HOH B . I 5 HOH 21 203 33 HOH HOH B . I 5 HOH 22 204 35 HOH HOH B . I 5 HOH 23 205 36 HOH HOH B . I 5 HOH 24 206 37 HOH HOH B . I 5 HOH 25 207 38 HOH HOH B . I 5 HOH 26 208 40 HOH HOH B . I 5 HOH 27 209 41 HOH HOH B . I 5 HOH 28 210 42 HOH HOH B . I 5 HOH 29 211 43 HOH HOH B . I 5 HOH 30 212 44 HOH HOH B . I 5 HOH 31 213 45 HOH HOH B . I 5 HOH 32 214 46 HOH HOH B . I 5 HOH 33 215 47 HOH HOH B . I 5 HOH 34 216 50 HOH HOH B . I 5 HOH 35 217 71 HOH HOH B . I 5 HOH 36 218 72 HOH HOH B . I 5 HOH 37 219 73 HOH HOH B . I 5 HOH 38 220 74 HOH HOH B . I 5 HOH 39 221 75 HOH HOH B . I 5 HOH 40 222 78 HOH HOH B . I 5 HOH 41 223 79 HOH HOH B . I 5 HOH 42 224 80 HOH HOH B . I 5 HOH 43 225 82 HOH HOH B . I 5 HOH 44 226 84 HOH HOH B . I 5 HOH 45 227 85 HOH HOH B . I 5 HOH 46 228 86 HOH HOH B . I 5 HOH 47 229 87 HOH HOH B . I 5 HOH 48 230 88 HOH HOH B . I 5 HOH 49 231 90 HOH HOH B . I 5 HOH 50 232 91 HOH HOH B . I 5 HOH 51 233 96 HOH HOH B . I 5 HOH 52 234 98 HOH HOH B . I 5 HOH 53 235 100 HOH HOH B . I 5 HOH 54 236 101 HOH HOH B . I 5 HOH 55 237 102 HOH HOH B . I 5 HOH 56 238 103 HOH HOH B . I 5 HOH 57 239 104 HOH HOH B . I 5 HOH 58 240 107 HOH HOH B . I 5 HOH 59 241 108 HOH HOH B . I 5 HOH 60 242 111 HOH HOH B . I 5 HOH 61 243 116 HOH HOH B . I 5 HOH 62 244 118 HOH HOH B . I 5 HOH 63 245 121 HOH HOH B . I 5 HOH 64 246 122 HOH HOH B . I 5 HOH 65 247 123 HOH HOH B . I 5 HOH 66 248 125 HOH HOH B . I 5 HOH 67 249 128 HOH HOH B . I 5 HOH 68 250 129 HOH HOH B . I 5 HOH 69 251 92 HOH HOH B . I 5 HOH 70 252 93 HOH HOH B . I 5 HOH 71 253 94 HOH HOH B . I 5 HOH 72 254 95 HOH HOH B . I 5 HOH 73 255 132 HOH HOH B . I 5 HOH 74 256 133 HOH HOH B . I 5 HOH 75 257 134 HOH HOH B . I 5 HOH 76 258 138 HOH HOH B . I 5 HOH 77 259 139 HOH HOH B . I 5 HOH 78 260 143 HOH HOH B . I 5 HOH 79 261 144 HOH HOH B . I 5 HOH 80 262 146 HOH HOH B . I 5 HOH 81 263 147 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 65 A ASN 65 ? ASN 'GLYCOSYLATION SITE' 2 B ASN 65 B ASN 65 ? ASN 'GLYCOSYLATION SITE' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,H 2 1 B,F,G,I 3 1,2 B,F,G,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 2040 ? 3 MORE -35 ? 3 'SSA (A^2)' 18430 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 115.0210000000 -1.0000000000 0.0000000000 0.0000000000 115.0210000000 0.0000000000 0.0000000000 -1.0000000000 58.8190000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 230 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-03-06 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Non-polymer description' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp 3 5 'Structure model' database_PDB_caveat 4 5 'Structure model' entity 5 5 'Structure model' pdbx_branch_scheme 6 5 'Structure model' pdbx_chem_comp_identifier 7 5 'Structure model' pdbx_entity_branch 8 5 'Structure model' pdbx_entity_branch_descriptor 9 5 'Structure model' pdbx_entity_branch_link 10 5 'Structure model' pdbx_entity_branch_list 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' pdbx_nonpoly_scheme 13 5 'Structure model' pdbx_struct_assembly_gen 14 5 'Structure model' pdbx_struct_special_symmetry 15 5 'Structure model' pdbx_validate_chiral 16 5 'Structure model' struct_asym 17 5 'Structure model' struct_conn 18 5 'Structure model' struct_site 19 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.B_iso_or_equiv' 2 5 'Structure model' '_atom_site.Cartn_x' 3 5 'Structure model' '_atom_site.Cartn_y' 4 5 'Structure model' '_atom_site.Cartn_z' 5 5 'Structure model' '_atom_site.auth_asym_id' 6 5 'Structure model' '_atom_site.auth_atom_id' 7 5 'Structure model' '_atom_site.auth_comp_id' 8 5 'Structure model' '_atom_site.auth_seq_id' 9 5 'Structure model' '_atom_site.label_asym_id' 10 5 'Structure model' '_atom_site.label_atom_id' 11 5 'Structure model' '_atom_site.label_comp_id' 12 5 'Structure model' '_atom_site.type_symbol' 13 5 'Structure model' '_chem_comp.formula' 14 5 'Structure model' '_chem_comp.formula_weight' 15 5 'Structure model' '_chem_comp.id' 16 5 'Structure model' '_chem_comp.mon_nstd_flag' 17 5 'Structure model' '_chem_comp.name' 18 5 'Structure model' '_chem_comp.type' 19 5 'Structure model' '_entity.formula_weight' 20 5 'Structure model' '_entity.pdbx_description' 21 5 'Structure model' '_entity.pdbx_number_of_molecules' 22 5 'Structure model' '_entity.type' 23 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 24 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 25 5 'Structure model' '_struct_conn.pdbx_dist_value' 26 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 5 'Structure model' '_struct_conn.pdbx_role' 28 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 EPMR phasing . ? 3 CNS refinement 0.5 ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ILE _pdbx_validate_rmsd_angle.auth_seq_id_1 97 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ILE _pdbx_validate_rmsd_angle.auth_seq_id_2 97 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ILE _pdbx_validate_rmsd_angle.auth_seq_id_3 97 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 130.67 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation 19.67 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 13 ? ? -24.60 -44.80 2 1 ARG A 43 ? ? -68.23 73.12 3 1 ASP A 47 ? ? -167.28 70.73 4 1 ARG A 72 ? ? -91.44 -76.19 5 1 LYS A 74 ? ? 70.35 47.92 6 1 LYS A 75 ? ? 179.46 169.73 7 1 ILE A 97 ? ? -42.87 161.40 8 1 LYS A 98 ? ? 94.24 -17.62 9 1 TYR A 106 ? ? -173.29 128.13 10 1 TYR A 115 ? ? 64.13 -14.71 11 1 GLN A 117 ? ? -104.78 -71.68 12 1 GLN A 128 ? ? 58.07 16.53 13 1 ASN A 129 ? ? 85.01 -4.13 14 1 CYS A 175 ? ? 59.74 -23.34 15 1 ASP B 47 ? ? -163.18 72.77 16 1 ASN B 96 ? ? 60.24 -6.90 17 1 ILE B 97 ? ? 6.04 -22.36 18 1 TYR B 106 ? ? -161.56 114.43 19 1 TYR B 115 ? ? 60.60 -22.88 20 1 GLN B 117 ? ? -120.94 -54.35 21 1 GLN B 128 ? ? 71.09 -5.04 22 1 ASN B 129 ? ? 103.81 7.28 23 1 CYS B 175 ? ? 61.63 -22.02 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id NAG _pdbx_validate_chiral.auth_seq_id 178 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 44 ? CG ? A GLU 44 CG 2 1 Y 1 A GLU 44 ? CD ? A GLU 44 CD 3 1 Y 1 A GLU 44 ? OE1 ? A GLU 44 OE1 4 1 Y 1 A GLU 44 ? OE2 ? A GLU 44 OE2 5 1 Y 1 A LYS 46 ? CG ? A LYS 46 CG 6 1 Y 1 A LYS 46 ? CD ? A LYS 46 CD 7 1 Y 1 A LYS 46 ? CE ? A LYS 46 CE 8 1 Y 1 A LYS 46 ? NZ ? A LYS 46 NZ 9 1 Y 1 A ARG 72 ? CG ? A ARG 72 CG 10 1 Y 1 A ARG 72 ? CD ? A ARG 72 CD 11 1 Y 1 A ARG 72 ? NE ? A ARG 72 NE 12 1 Y 1 A ARG 72 ? CZ ? A ARG 72 CZ 13 1 Y 1 A ARG 72 ? NH1 ? A ARG 72 NH1 14 1 Y 1 A ARG 72 ? NH2 ? A ARG 72 NH2 15 1 Y 1 A LYS 73 ? CG ? A LYS 73 CG 16 1 Y 1 A LYS 73 ? CD ? A LYS 73 CD 17 1 Y 1 A LYS 73 ? CE ? A LYS 73 CE 18 1 Y 1 A LYS 73 ? NZ ? A LYS 73 NZ 19 1 Y 1 A LYS 98 ? CG ? A LYS 98 CG 20 1 Y 1 A LYS 98 ? CD ? A LYS 98 CD 21 1 Y 1 A LYS 98 ? CE ? A LYS 98 CE 22 1 Y 1 A LYS 98 ? NZ ? A LYS 98 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 1 ? A GLN 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 B GLN 1 ? B GLN 1 6 1 Y 1 B ASP 2 ? B ASP 2 7 1 Y 1 B SER 3 ? B SER 3 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 NAG 1 C NAG 1 A NAG 179 n C 2 NAG 2 C NAG 2 A NAG 180 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 water HOH #