data_1DGD
#
_entry.id 1DGD
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.287
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
PDB 1DGD
WWPDB D_1000172776
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1DGD
_pdbx_database_status.recvd_initial_deposition_date 1994-06-29
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Hohenester, E.' 1
'Jansonius, J.N.' 2
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'An alkali metal ion size-dependent switch in the active site structure of dialkylglycine decarboxylase.' Biochemistry 33
13561 13570 1994 BICHAW US 0006-2960 0033 ? 7947767 10.1021/bi00250a008
1 'Dialkylglycine Decarboxylase Structure: Bifunctional Active Site and Alkali Metal Sites' Science 261 756 ?
1993 SCIEAS US 0036-8075 0038 ? ? ?
2
'Pseudomonas Cepacia 2,2-Dialkylglycine Decarboxylase. Sequence and Expression in Escherichia Coli of Structural and Repressor Genes'
J.Biol.Chem. 265 5531 ? 1990 JBCHA3 US 0021-9258 0071 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
primary 'Hohenester, E.' 1
primary 'Keller, J.W.' 2
primary 'Jansonius, J.N.' 3
1 'Toney, M.D.' 4
1 'Hohenester, E.' 5
1 'Jacob, S.W.' 6
1 'Jansonius, J.N.' 7
2 'Keller, J.W.' 8
2 'Baurick, K.B.' 9
2 'Rutt, G.C.' 10
2
;O'Malley, M.V.
;
11
2 'Sonafrank, N.L.' 12
2 'Reynolds, R.' 13
2 'Ebbesson, L.O.' 14
2 'Vajdos, F.F.' 15
#
_cell.entry_id 1DGD
_cell.length_a 152.700
_cell.length_b 152.700
_cell.length_c 86.600
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1DGD
_symmetry.space_group_name_H-M 'P 64 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 181
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'DIALKYLGLYCINE DECARBOXYLASE' 46374.145 1 4.1.1.64 ? ? ?
2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ?
3 non-polymer syn 'LITHIUM ION' 6.941 1 ? ? ? ?
4 non-polymer syn "PYRIDOXAL-5'-PHOSPHATE" 247.142 1 ? ? ? ?
5 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ?
6 water nat water 18.015 99 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;SLNDDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSG
MLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAA
VGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI
LDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV
QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM
GGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
;
_entity_poly.pdbx_seq_one_letter_code_can
;SLNDDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSG
MLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAA
VGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI
LDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV
QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM
GGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 SER n
1 2 LEU n
1 3 ASN n
1 4 ASP n
1 5 ASP n
1 6 ALA n
1 7 THR n
1 8 PHE n
1 9 TRP n
1 10 ARG n
1 11 ASN n
1 12 ALA n
1 13 ARG n
1 14 HIS n
1 15 HIS n
1 16 LEU n
1 17 VAL n
1 18 ARG n
1 19 TYR n
1 20 GLY n
1 21 GLY n
1 22 THR n
1 23 PHE n
1 24 GLU n
1 25 PRO n
1 26 MET n
1 27 ILE n
1 28 ILE n
1 29 GLU n
1 30 ARG n
1 31 ALA n
1 32 LYS n
1 33 GLY n
1 34 SER n
1 35 PHE n
1 36 VAL n
1 37 TYR n
1 38 ASP n
1 39 ALA n
1 40 ASP n
1 41 GLY n
1 42 ARG n
1 43 ALA n
1 44 ILE n
1 45 LEU n
1 46 ASP n
1 47 PHE n
1 48 THR n
1 49 SER n
1 50 GLY n
1 51 GLN n
1 52 MET n
1 53 SER n
1 54 ALA n
1 55 VAL n
1 56 LEU n
1 57 GLY n
1 58 HIS n
1 59 CYS n
1 60 HIS n
1 61 PRO n
1 62 GLU n
1 63 ILE n
1 64 VAL n
1 65 SER n
1 66 VAL n
1 67 ILE n
1 68 GLY n
1 69 GLU n
1 70 TYR n
1 71 ALA n
1 72 GLY n
1 73 LYS n
1 74 LEU n
1 75 ASP n
1 76 HIS n
1 77 LEU n
1 78 PHE n
1 79 SER n
1 80 GLY n
1 81 MET n
1 82 LEU n
1 83 SER n
1 84 ARG n
1 85 PRO n
1 86 VAL n
1 87 VAL n
1 88 ASP n
1 89 LEU n
1 90 ALA n
1 91 THR n
1 92 ARG n
1 93 LEU n
1 94 ALA n
1 95 ASN n
1 96 ILE n
1 97 THR n
1 98 PRO n
1 99 PRO n
1 100 GLY n
1 101 LEU n
1 102 ASP n
1 103 ARG n
1 104 ALA n
1 105 LEU n
1 106 LEU n
1 107 LEU n
1 108 SER n
1 109 THR n
1 110 GLY n
1 111 ALA n
1 112 GLU n
1 113 SER n
1 114 ASN n
1 115 GLU n
1 116 ALA n
1 117 ALA n
1 118 ILE n
1 119 ARG n
1 120 MET n
1 121 ALA n
1 122 LYS n
1 123 LEU n
1 124 VAL n
1 125 THR n
1 126 GLY n
1 127 LYS n
1 128 TYR n
1 129 GLU n
1 130 ILE n
1 131 VAL n
1 132 GLY n
1 133 PHE n
1 134 ALA n
1 135 GLN n
1 136 SER n
1 137 TRP n
1 138 HIS n
1 139 GLY n
1 140 MET n
1 141 THR n
1 142 GLY n
1 143 ALA n
1 144 ALA n
1 145 ALA n
1 146 SER n
1 147 ALA n
1 148 THR n
1 149 TYR n
1 150 SER n
1 151 ALA n
1 152 GLY n
1 153 ARG n
1 154 LYS n
1 155 GLY n
1 156 VAL n
1 157 GLY n
1 158 PRO n
1 159 ALA n
1 160 ALA n
1 161 VAL n
1 162 GLY n
1 163 SER n
1 164 PHE n
1 165 ALA n
1 166 ILE n
1 167 PRO n
1 168 ALA n
1 169 PRO n
1 170 PHE n
1 171 THR n
1 172 TYR n
1 173 ARG n
1 174 PRO n
1 175 ARG n
1 176 PHE n
1 177 GLU n
1 178 ARG n
1 179 ASN n
1 180 GLY n
1 181 ALA n
1 182 TYR n
1 183 ASP n
1 184 TYR n
1 185 LEU n
1 186 ALA n
1 187 GLU n
1 188 LEU n
1 189 ASP n
1 190 TYR n
1 191 ALA n
1 192 PHE n
1 193 ASP n
1 194 LEU n
1 195 ILE n
1 196 ASP n
1 197 ARG n
1 198 GLN n
1 199 SER n
1 200 SER n
1 201 GLY n
1 202 ASN n
1 203 LEU n
1 204 ALA n
1 205 ALA n
1 206 PHE n
1 207 ILE n
1 208 ALA n
1 209 GLU n
1 210 PRO n
1 211 ILE n
1 212 LEU n
1 213 SER n
1 214 SER n
1 215 GLY n
1 216 GLY n
1 217 ILE n
1 218 ILE n
1 219 GLU n
1 220 LEU n
1 221 PRO n
1 222 ASP n
1 223 GLY n
1 224 TYR n
1 225 MET n
1 226 ALA n
1 227 ALA n
1 228 LEU n
1 229 LYS n
1 230 ARG n
1 231 LYS n
1 232 CYS n
1 233 GLU n
1 234 ALA n
1 235 ARG n
1 236 GLY n
1 237 MET n
1 238 LEU n
1 239 LEU n
1 240 ILE n
1 241 LEU n
1 242 ASP n
1 243 GLU n
1 244 ALA n
1 245 GLN n
1 246 THR n
1 247 GLY n
1 248 VAL n
1 249 GLY n
1 250 ARG n
1 251 THR n
1 252 GLY n
1 253 THR n
1 254 MET n
1 255 PHE n
1 256 ALA n
1 257 CYS n
1 258 GLN n
1 259 ARG n
1 260 ASP n
1 261 GLY n
1 262 VAL n
1 263 THR n
1 264 PRO n
1 265 ASP n
1 266 ILE n
1 267 LEU n
1 268 THR n
1 269 LEU n
1 270 SER n
1 271 LYS n
1 272 THR n
1 273 LEU n
1 274 GLY n
1 275 ALA n
1 276 GLY n
1 277 LEU n
1 278 PRO n
1 279 LEU n
1 280 ALA n
1 281 ALA n
1 282 ILE n
1 283 VAL n
1 284 THR n
1 285 SER n
1 286 ALA n
1 287 ALA n
1 288 ILE n
1 289 GLU n
1 290 GLU n
1 291 ARG n
1 292 ALA n
1 293 HIS n
1 294 GLU n
1 295 LEU n
1 296 GLY n
1 297 TYR n
1 298 LEU n
1 299 PHE n
1 300 TYR n
1 301 THR n
1 302 THR n
1 303 HIS n
1 304 VAL n
1 305 SER n
1 306 ASP n
1 307 PRO n
1 308 LEU n
1 309 PRO n
1 310 ALA n
1 311 ALA n
1 312 VAL n
1 313 GLY n
1 314 LEU n
1 315 ARG n
1 316 VAL n
1 317 LEU n
1 318 ASP n
1 319 VAL n
1 320 VAL n
1 321 GLN n
1 322 ARG n
1 323 ASP n
1 324 GLY n
1 325 LEU n
1 326 VAL n
1 327 ALA n
1 328 ARG n
1 329 ALA n
1 330 ASN n
1 331 VAL n
1 332 MET n
1 333 GLY n
1 334 ASP n
1 335 ARG n
1 336 LEU n
1 337 ARG n
1 338 ARG n
1 339 GLY n
1 340 LEU n
1 341 LEU n
1 342 ASP n
1 343 LEU n
1 344 MET n
1 345 GLU n
1 346 ARG n
1 347 PHE n
1 348 ASP n
1 349 CYS n
1 350 ILE n
1 351 GLY n
1 352 ASP n
1 353 VAL n
1 354 ARG n
1 355 GLY n
1 356 ARG n
1 357 GLY n
1 358 LEU n
1 359 LEU n
1 360 LEU n
1 361 GLY n
1 362 VAL n
1 363 GLU n
1 364 ILE n
1 365 VAL n
1 366 LYS n
1 367 ASP n
1 368 ARG n
1 369 ARG n
1 370 THR n
1 371 LYS n
1 372 GLU n
1 373 PRO n
1 374 ALA n
1 375 ASP n
1 376 GLY n
1 377 LEU n
1 378 GLY n
1 379 ALA n
1 380 LYS n
1 381 ILE n
1 382 THR n
1 383 ARG n
1 384 GLU n
1 385 CYS n
1 386 MET n
1 387 ASN n
1 388 LEU n
1 389 GLY n
1 390 LEU n
1 391 SER n
1 392 MET n
1 393 ASN n
1 394 ILE n
1 395 VAL n
1 396 GLN n
1 397 LEU n
1 398 PRO n
1 399 GLY n
1 400 MET n
1 401 GLY n
1 402 GLY n
1 403 VAL n
1 404 PHE n
1 405 ARG n
1 406 ILE n
1 407 ALA n
1 408 PRO n
1 409 PRO n
1 410 LEU n
1 411 THR n
1 412 VAL n
1 413 SER n
1 414 GLU n
1 415 ASP n
1 416 GLU n
1 417 ILE n
1 418 ASP n
1 419 LEU n
1 420 GLY n
1 421 LEU n
1 422 SER n
1 423 LEU n
1 424 LEU n
1 425 GLY n
1 426 GLN n
1 427 ALA n
1 428 ILE n
1 429 GLU n
1 430 ARG n
1 431 ALA n
1 432 LEU n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus Burkholderia
_entity_src_gen.pdbx_gene_src_gene ?
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia cepacia'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 292
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name ?
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ?
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code DGDA_BURCE
_struct_ref.entity_id 1
_struct_ref.pdbx_db_accession P16932
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_seq_one_letter_code
;SLNDDATFWRNARQHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSG
MLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAA
VGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI
LDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV
QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM
GGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
;
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1DGD
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 432
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P16932
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 432
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 2
_struct_ref_seq.pdbx_auth_seq_align_end 433
#
_struct_ref_seq_dif.align_id 1
_struct_ref_seq_dif.pdbx_pdb_id_code 1DGD
_struct_ref_seq_dif.mon_id HIS
_struct_ref_seq_dif.pdbx_pdb_strand_id A
_struct_ref_seq_dif.seq_num 14
_struct_ref_seq_dif.pdbx_pdb_ins_code ?
_struct_ref_seq_dif.pdbx_seq_db_name UNP
_struct_ref_seq_dif.pdbx_seq_db_accession_code P16932
_struct_ref_seq_dif.db_mon_id GLN
_struct_ref_seq_dif.pdbx_seq_db_seq_num 14
_struct_ref_seq_dif.details CONFLICT
_struct_ref_seq_dif.pdbx_auth_seq_num 15
_struct_ref_seq_dif.pdbx_ordinal 1
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LI non-polymer . 'LITHIUM ION' ? 'Li 1' 6.941
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PLP non-polymer . "PYRIDOXAL-5'-PHOSPHATE" 'VITAMIN B6 Phosphate' 'C8 H10 N O6 P' 247.142
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.entry_id 1DGD
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 3.14
_exptl_crystal.density_percent_sol 60.84
_exptl_crystal.description ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_refine.entry_id 1DGD
_refine.ls_number_reflns_obs 14224
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.
_refine.ls_d_res_high 2.8
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.1780000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 3247
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 29
_refine_hist.number_atoms_solvent 99
_refine_hist.number_atoms_total 3375
_refine_hist.d_res_high 2.8
_refine_hist.d_res_low 8.
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
t_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ?
t_angle_deg 2.6 ? ? ? 'X-RAY DIFFRACTION' ?
t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ?
t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ?
t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ?
t_gen_planes 0.009 ? ? ? 'X-RAY DIFFRACTION' ?
t_it 1.7 ? ? ? 'X-RAY DIFFRACTION' ?
t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_struct.entry_id 1DGD
_struct.title
'AN ALKALI METAL ION SIZE-DEPENDENT SWITCH IN THE ACTIVE SITE STRUCTURE OF DIALKYLGLYCINE DECARBOXYLASE'
_struct.pdbx_descriptor
;DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE) (DGD) (E.C.4.1.1.64) MUTANT WITH GLN 15 REPLACED BY HIS (Q15H) COMPLEXED WITH LITHIUM+ IN METAL-BINDING SITE 1
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1DGD
_struct_keywords.pdbx_keywords LYASE
_struct_keywords.text LYASE
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
F N N 6 ?
#
_struct_biol.id 1
_struct_biol.details
;THE MOLECULE IS A TETRAMER OF IDENTICAL SUBUNITS. THIS
ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH
COMPRISES ONE MONOMER. THE TETRAMER CAN BE GENERATED BY
CRYSTALLOGRAPHIC DYADS. APPLYING THE FOLLOWING
TRANSFORMATION TO THE COORDINATES IN THIS ENTRY WILL YIELD
A DIMER:
MTRIX1 1 -0.500000 0.866000 0.000000 0.00000
MTRIX2 1 0.866000 0.500000 0.000000 0.00000
MTRIX3 1 0.000000 0.000000 1.000000 28.87000
APPLYING THE FOLLOWING TRANSFORMATION TO THE DIMER WILL
YIELD THE TETRAMER:
MTRIX1 2 -1.000000 0.000000 0.000000 76.40000
MTRIX2 2 0.000000 -1.000000 0.000000 132.20000
MTRIX3 2 0.000000 0.000000 1.000000 0.00000
;
_struct_biol.pdbx_parent_biol_id ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 H1 ALA A 6 ? HIS A 15 ? ALA A 7 HIS A 16 1 ? 10
HELX_P HELX_P2 H2 PRO A 61 ? ALA A 71 ? PRO A 62 ALA A 72 1 ? 11
HELX_P HELX_P3 H3 ARG A 84 ? ILE A 96 ? ARG A 85 ILE A 97 1 ? 13
HELX_P HELX_P4 H4 GLY A 110 ? THR A 125 ? GLY A 111 THR A 126 1 ? 16
HELX_P HELX_P5 H5 GLY A 142 ? SER A 146 ? GLY A 143 SER A 147 1 ? 5
HELX_P HELX_P6 H6 TYR A 184 ? GLN A 198 ? TYR A 185 GLN A 199 1 ? 15
HELX_P HELX_P7 H7 TYR A 224 ? ALA A 234 ? TYR A 225 ALA A 235 1 ? 11
HELX_P HELX_P8 H8 ALA A 256 ? ASP A 260 ? ALA A 257 ASP A 261 1 ? 5
HELX_P HELX_P9 H9 ALA A 286 ? LEU A 295 ? ALA A 287 LEU A 296 1 ? 10
HELX_P HELX_P10 H10 PRO A 307 ? ARG A 322 ? PRO A 308 ARG A 323 1 ? 16
HELX_P HELX_P11 H11 LEU A 325 ? ARG A 346 ? LEU A 326 ARG A 347 1 ? 22
HELX_P HELX_P12 H12 LEU A 377 ? LEU A 388 ? LEU A 378 LEU A 389 1 ? 12
HELX_P HELX_P13 H13 GLU A 414 ? ARG A 430 ? GLU A 415 ARG A 431 1 ? 17
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale1 covale ? ? A LYS 271 NZ ? ? ? 1_555 D PLP . C4A ? ? A LYS 272 A PLP 437 1_555 ? ? ? ? ? ? ? 1.300 ?
metalc1 metalc ? ? B NA . NA ? ? ? 1_555 A ALA 94 O ? ? A NA 435 A ALA 95 1_555 ? ? ? ? ? ? ? 2.426 ?
metalc2 metalc ? ? B NA . NA ? ? ? 1_555 A LEU 101 O ? ? A NA 435 A LEU 102 1_555 ? ? ? ? ? ? ? 2.421 ?
metalc3 metalc ? ? B NA . NA ? ? ? 1_555 F HOH . O ? ? A NA 435 A HOH 540 1_555 ? ? ? ? ? ? ? 2.292 ?
metalc4 metalc ? ? B NA . NA ? ? ? 1_555 A PRO 98 O ? ? A NA 435 A PRO 99 1_555 ? ? ? ? ? ? ? 2.230 ?
metalc5 metalc ? ? B NA . NA ? ? ? 1_555 A THR 97 O ? ? A NA 435 A THR 98 1_555 ? ? ? ? ? ? ? 2.409 ?
metalc6 metalc ? ? C LI . LI ? ? ? 1_555 F HOH . O ? ? A LI 436 A HOH 552 1_555 ? ? ? ? ? ? ? 1.915 ?
metalc7 metalc ? ? C LI . LI ? ? ? 1_555 A LEU 77 O ? ? A LI 436 A LEU 78 1_555 ? ? ? ? ? ? ? 1.923 ?
metalc8 metalc ? ? C LI . LI ? ? ? 1_555 F HOH . O ? ? A LI 436 A HOH 539 1_555 ? ? ? ? ? ? ? 1.900 ?
metalc9 metalc ? ? C LI . LI ? ? ? 1_555 A ASP 306 OD1 ? ? A LI 436 A ASP 307 1_555 ? ? ? ? ? ? ? 1.868 ?
metalc10 metalc ? ? A THR 97 OG1 ? ? ? 1_555 B NA . NA ? ? A THR 98 A NA 435 1_555 ? ? ? ? ? ? ? 2.858 ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
S1 ? 3 ?
S2 ? 7 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
S1 1 2 ? anti-parallel
S1 2 3 ? anti-parallel
S2 1 2 ? anti-parallel
S2 2 3 ? anti-parallel
S2 3 4 ? parallel
S2 4 5 ? parallel
S2 5 6 ? parallel
S2 6 7 ? parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
S1 1 GLU A 29 ? LYS A 32 ? GLU A 30 LYS A 33
S1 2 PHE A 35 ? ASP A 38 ? PHE A 36 ASP A 39
S1 3 ARG A 42 ? ASP A 46 ? ARG A 43 ASP A 47
S2 1 ARG A 103 ? SER A 108 ? ARG A 104 SER A 109
S2 2 LEU A 279 ? THR A 284 ? LEU A 280 THR A 285
S2 3 ASP A 265 ? LEU A 269 ? ASP A 266 LEU A 270
S2 4 LEU A 238 ? GLU A 243 ? LEU A 239 GLU A 244
S2 5 LEU A 203 ? ALA A 208 ? LEU A 204 ALA A 209
S2 6 GLU A 129 ? PHE A 133 ? GLU A 130 PHE A 134
S2 7 GLY A 162 ? ILE A 166 ? GLY A 163 ILE A 167
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
S1 1 2 O LYS A 32 ? O LYS A 33 N TYR A 37 ? N TYR A 38
S1 2 3 O VAL A 36 ? O VAL A 37 N ILE A 44 ? N ILE A 45
S2 1 2 N ARG A 103 ? N ARG A 104 O THR A 284 ? O THR A 285
S2 2 3 O VAL A 283 ? O VAL A 284 N LEU A 267 ? N LEU A 268
S2 3 4 O ILE A 266 ? O ILE A 267 N LEU A 241 ? N LEU A 242
S2 4 5 O ILE A 240 ? O ILE A 241 N ALA A 208 ? N ALA A 209
S2 5 6 N ILE A 207 ? N ILE A 208 O VAL A 131 ? O VAL A 132
S2 6 7 N GLY A 132 ? N GLY A 133 O PHE A 164 ? O PHE A 165
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
ACT Author ? ? ? ? 22 'ACTIVE SITE: THE COFACTOR PLP IS COVALENTLY BOUND'
ME1 Author ? ? ? ? 5 'METAL BINDING SITE 1 (NEAR THE ACTIVE SITE): LIGANDS TO THE LI+ ION ARE INDICATED'
ME2 Author ? ? ? ? 6 'METAL BINDING SITE 2: LIGANDS TO THE NA+ ION ARE INDICATED'
AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 435'
AC2 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE PLP A 437'
AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE MES A 434'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 ACT 22 GLN A 51 ? GLN A 52 . ? 1_555 ?
2 ACT 22 MET A 52 ? MET A 53 . ? 1_555 ?
3 ACT 22 PHE A 78 ? PHE A 79 . ? 1_555 ?
4 ACT 22 THR A 109 ? THR A 110 . ? 1_555 ?
5 ACT 22 GLY A 110 ? GLY A 111 . ? 1_555 ?
6 ACT 22 ASN A 114 ? ASN A 115 . ? 1_555 ?
7 ACT 22 SER A 136 ? SER A 137 . ? 1_555 ?
8 ACT 22 TRP A 137 ? TRP A 138 . ? 1_555 ?
9 ACT 22 MET A 140 ? MET A 141 . ? 1_555 ?
10 ACT 22 GLU A 209 ? GLU A 210 . ? 1_555 ?
11 ACT 22 SER A 213 ? SER A 214 . ? 1_555 ?
12 ACT 22 SER A 214 ? SER A 215 . ? 1_555 ?
13 ACT 22 ASP A 242 ? ASP A 243 . ? 1_555 ?
14 ACT 22 ALA A 244 ? ALA A 245 . ? 1_555 ?
15 ACT 22 GLN A 245 ? GLN A 246 . ? 1_555 ?
16 ACT 22 LYS A 271 ? LYS A 272 . ? 1_555 ?
17 ACT 22 PLP D . ? PLP A 437 . ? 1_555 ?
18 ACT 22 TYR A 300 ? TYR A 301 . ? 1_555 ?
19 ACT 22 THR A 302 ? THR A 303 . ? 1_555 ?
20 ACT 22 ASN A 393 ? ASN A 394 . ? 1_555 ?
21 ACT 22 ARG A 405 ? ARG A 406 . ? 1_555 ?
22 ACT 22 MES E . ? MES A 434 . ? 1_555 ?
23 ME1 5 LEU A 77 ? LEU A 78 . ? 1_555 ?
24 ME1 5 ASP A 306 ? ASP A 307 . ? 1_555 ?
25 ME1 5 HOH F . ? HOH A 539 . ? 1_555 ?
26 ME1 5 HOH F . ? HOH A 552 . ? 1_555 ?
27 ME1 5 LI C . ? LI A 436 . ? 1_555 ?
28 ME2 6 ALA A 94 ? ALA A 95 . ? 1_555 ?
29 ME2 6 THR A 97 ? THR A 98 . ? 1_555 ?
30 ME2 6 PRO A 98 ? PRO A 99 . ? 1_555 ?
31 ME2 6 LEU A 101 ? LEU A 102 . ? 1_555 ?
32 ME2 6 HOH F . ? HOH A 540 . ? 1_555 ?
33 ME2 6 NA B . ? NA A 435 . ? 1_555 ?
34 AC1 5 ALA A 94 ? ALA A 95 . ? 1_555 ?
35 AC1 5 THR A 97 ? THR A 98 . ? 1_555 ?
36 AC1 5 PRO A 98 ? PRO A 99 . ? 1_555 ?
37 AC1 5 LEU A 101 ? LEU A 102 . ? 1_555 ?
38 AC1 5 HOH F . ? HOH A 540 . ? 1_555 ?
39 AC2 16 THR A 109 ? THR A 110 . ? 1_555 ?
40 AC2 16 GLY A 110 ? GLY A 111 . ? 1_555 ?
41 AC2 16 ALA A 111 ? ALA A 112 . ? 1_555 ?
42 AC2 16 ASN A 114 ? ASN A 115 . ? 1_555 ?
43 AC2 16 TRP A 137 ? TRP A 138 . ? 1_555 ?
44 AC2 16 HIS A 138 ? HIS A 139 . ? 1_555 ?
45 AC2 16 GLU A 209 ? GLU A 210 . ? 1_555 ?
46 AC2 16 ASP A 242 ? ASP A 243 . ? 1_555 ?
47 AC2 16 ALA A 244 ? ALA A 245 . ? 1_555 ?
48 AC2 16 GLN A 245 ? GLN A 246 . ? 1_555 ?
49 AC2 16 LYS A 271 ? LYS A 272 . ? 1_555 ?
50 AC2 16 THR A 301 ? THR A 302 . ? 7_555 ?
51 AC2 16 THR A 302 ? THR A 303 . ? 7_555 ?
52 AC2 16 MES E . ? MES A 434 . ? 1_555 ?
53 AC2 16 HOH F . ? HOH A 555 . ? 7_555 ?
54 AC2 16 HOH F . ? HOH A 557 . ? 1_555 ?
55 AC3 8 GLN A 51 ? GLN A 52 . ? 1_555 ?
56 AC3 8 TRP A 137 ? TRP A 138 . ? 1_555 ?
57 AC3 8 ALA A 151 ? ALA A 152 . ? 1_555 ?
58 AC3 8 SER A 214 ? SER A 215 . ? 1_555 ?
59 AC3 8 GLN A 245 ? GLN A 246 . ? 1_555 ?
60 AC3 8 LYS A 271 ? LYS A 272 . ? 1_555 ?
61 AC3 8 ARG A 405 ? ARG A 406 . ? 1_555 ?
62 AC3 8 PLP D . ? PLP A 437 . ? 1_555 ?
#
_database_PDB_matrix.entry_id 1DGD
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 1DGD
_atom_sites.fract_transf_matrix[1][1] 0.006549
_atom_sites.fract_transf_matrix[1][2] 0.003781
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.007562
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.011547
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_sites_footnote.id
_atom_sites_footnote.text
1 'ATOMS WITH WEAK DENSITY HAVE BEEN REFINED WITH ZERO WEIGHT.'
2 'LYS 272 IS COVALENTLY BOUND TO THE COFACTOR PLP.'
#
loop_
_atom_type.symbol
C
LI
N
NA
O
P
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 SER 1 2 ? ? ? A . n
A 1 2 LEU 2 3 3 LEU LEU A . n
A 1 3 ASN 3 4 4 ASN ASN A . n
A 1 4 ASP 4 5 5 ASP ASP A . n
A 1 5 ASP 5 6 6 ASP ASP A . n
A 1 6 ALA 6 7 7 ALA ALA A . n
A 1 7 THR 7 8 8 THR THR A . n
A 1 8 PHE 8 9 9 PHE PHE A . n
A 1 9 TRP 9 10 10 TRP TRP A . n
A 1 10 ARG 10 11 11 ARG ARG A . n
A 1 11 ASN 11 12 12 ASN ASN A . n
A 1 12 ALA 12 13 13 ALA ALA A . n
A 1 13 ARG 13 14 14 ARG ARG A . n
A 1 14 HIS 14 15 15 HIS HIS A . n
A 1 15 HIS 15 16 16 HIS HIS A . n
A 1 16 LEU 16 17 17 LEU LEU A . n
A 1 17 VAL 17 18 18 VAL VAL A . n
A 1 18 ARG 18 19 19 ARG ARG A . n
A 1 19 TYR 19 20 20 TYR TYR A . n
A 1 20 GLY 20 21 21 GLY GLY A . n
A 1 21 GLY 21 22 22 GLY GLY A . n
A 1 22 THR 22 23 23 THR THR A . n
A 1 23 PHE 23 24 24 PHE PHE A . n
A 1 24 GLU 24 25 25 GLU GLU A . n
A 1 25 PRO 25 26 26 PRO PRO A . n
A 1 26 MET 26 27 27 MET MET A . n
A 1 27 ILE 27 28 28 ILE ILE A . n
A 1 28 ILE 28 29 29 ILE ILE A . n
A 1 29 GLU 29 30 30 GLU GLU A . n
A 1 30 ARG 30 31 31 ARG ARG A . n
A 1 31 ALA 31 32 32 ALA ALA A . n
A 1 32 LYS 32 33 33 LYS LYS A . n
A 1 33 GLY 33 34 34 GLY GLY A . n
A 1 34 SER 34 35 35 SER SER A . n
A 1 35 PHE 35 36 36 PHE PHE A . n
A 1 36 VAL 36 37 37 VAL VAL A . n
A 1 37 TYR 37 38 38 TYR TYR A . n
A 1 38 ASP 38 39 39 ASP ASP A . n
A 1 39 ALA 39 40 40 ALA ALA A . n
A 1 40 ASP 40 41 41 ASP ASP A . n
A 1 41 GLY 41 42 42 GLY GLY A . n
A 1 42 ARG 42 43 43 ARG ARG A . n
A 1 43 ALA 43 44 44 ALA ALA A . n
A 1 44 ILE 44 45 45 ILE ILE A . n
A 1 45 LEU 45 46 46 LEU LEU A . n
A 1 46 ASP 46 47 47 ASP ASP A . n
A 1 47 PHE 47 48 48 PHE PHE A . n
A 1 48 THR 48 49 49 THR THR A . n
A 1 49 SER 49 50 50 SER SER A . n
A 1 50 GLY 50 51 51 GLY GLY A . n
A 1 51 GLN 51 52 52 GLN GLN A . n
A 1 52 MET 52 53 53 MET MET A . n
A 1 53 SER 53 54 54 SER SER A . n
A 1 54 ALA 54 55 55 ALA ALA A . n
A 1 55 VAL 55 56 56 VAL VAL A . n
A 1 56 LEU 56 57 57 LEU LEU A . n
A 1 57 GLY 57 58 58 GLY GLY A . n
A 1 58 HIS 58 59 59 HIS HIS A . n
A 1 59 CYS 59 60 60 CYS CYS A . n
A 1 60 HIS 60 61 61 HIS HIS A . n
A 1 61 PRO 61 62 62 PRO PRO A . n
A 1 62 GLU 62 63 63 GLU GLU A . n
A 1 63 ILE 63 64 64 ILE ILE A . n
A 1 64 VAL 64 65 65 VAL VAL A . n
A 1 65 SER 65 66 66 SER SER A . n
A 1 66 VAL 66 67 67 VAL VAL A . n
A 1 67 ILE 67 68 68 ILE ILE A . n
A 1 68 GLY 68 69 69 GLY GLY A . n
A 1 69 GLU 69 70 70 GLU GLU A . n
A 1 70 TYR 70 71 71 TYR TYR A . n
A 1 71 ALA 71 72 72 ALA ALA A . n
A 1 72 GLY 72 73 73 GLY GLY A . n
A 1 73 LYS 73 74 74 LYS LYS A . n
A 1 74 LEU 74 75 75 LEU LEU A . n
A 1 75 ASP 75 76 76 ASP ASP A . n
A 1 76 HIS 76 77 77 HIS HIS A . n
A 1 77 LEU 77 78 78 LEU LEU A . n
A 1 78 PHE 78 79 79 PHE PHE A . n
A 1 79 SER 79 80 80 SER SER A . n
A 1 80 GLY 80 81 81 GLY GLY A . n
A 1 81 MET 81 82 82 MET MET A . n
A 1 82 LEU 82 83 83 LEU LEU A . n
A 1 83 SER 83 84 84 SER SER A . n
A 1 84 ARG 84 85 85 ARG ARG A . n
A 1 85 PRO 85 86 86 PRO PRO A . n
A 1 86 VAL 86 87 87 VAL VAL A . n
A 1 87 VAL 87 88 88 VAL VAL A . n
A 1 88 ASP 88 89 89 ASP ASP A . n
A 1 89 LEU 89 90 90 LEU LEU A . n
A 1 90 ALA 90 91 91 ALA ALA A . n
A 1 91 THR 91 92 92 THR THR A . n
A 1 92 ARG 92 93 93 ARG ARG A . n
A 1 93 LEU 93 94 94 LEU LEU A . n
A 1 94 ALA 94 95 95 ALA ALA A . n
A 1 95 ASN 95 96 96 ASN ASN A . n
A 1 96 ILE 96 97 97 ILE ILE A . n
A 1 97 THR 97 98 98 THR THR A . n
A 1 98 PRO 98 99 99 PRO PRO A . n
A 1 99 PRO 99 100 100 PRO PRO A . n
A 1 100 GLY 100 101 101 GLY GLY A . n
A 1 101 LEU 101 102 102 LEU LEU A . n
A 1 102 ASP 102 103 103 ASP ASP A . n
A 1 103 ARG 103 104 104 ARG ARG A . n
A 1 104 ALA 104 105 105 ALA ALA A . n
A 1 105 LEU 105 106 106 LEU LEU A . n
A 1 106 LEU 106 107 107 LEU LEU A . n
A 1 107 LEU 107 108 108 LEU LEU A . n
A 1 108 SER 108 109 109 SER SER A . n
A 1 109 THR 109 110 110 THR THR A . n
A 1 110 GLY 110 111 111 GLY GLY A . n
A 1 111 ALA 111 112 112 ALA ALA A . n
A 1 112 GLU 112 113 113 GLU GLU A . n
A 1 113 SER 113 114 114 SER SER A . n
A 1 114 ASN 114 115 115 ASN ASN A . n
A 1 115 GLU 115 116 116 GLU GLU A . n
A 1 116 ALA 116 117 117 ALA ALA A . n
A 1 117 ALA 117 118 118 ALA ALA A . n
A 1 118 ILE 118 119 119 ILE ILE A . n
A 1 119 ARG 119 120 120 ARG ARG A . n
A 1 120 MET 120 121 121 MET MET A . n
A 1 121 ALA 121 122 122 ALA ALA A . n
A 1 122 LYS 122 123 123 LYS LYS A . n
A 1 123 LEU 123 124 124 LEU LEU A . n
A 1 124 VAL 124 125 125 VAL VAL A . n
A 1 125 THR 125 126 126 THR THR A . n
A 1 126 GLY 126 127 127 GLY GLY A . n
A 1 127 LYS 127 128 128 LYS LYS A . n
A 1 128 TYR 128 129 129 TYR TYR A . n
A 1 129 GLU 129 130 130 GLU GLU A . n
A 1 130 ILE 130 131 131 ILE ILE A . n
A 1 131 VAL 131 132 132 VAL VAL A . n
A 1 132 GLY 132 133 133 GLY GLY A . n
A 1 133 PHE 133 134 134 PHE PHE A . n
A 1 134 ALA 134 135 135 ALA ALA A . n
A 1 135 GLN 135 136 136 GLN GLN A . n
A 1 136 SER 136 137 137 SER SER A . n
A 1 137 TRP 137 138 138 TRP TRP A . n
A 1 138 HIS 138 139 139 HIS HIS A . n
A 1 139 GLY 139 140 140 GLY GLY A . n
A 1 140 MET 140 141 141 MET MET A . n
A 1 141 THR 141 142 142 THR THR A . n
A 1 142 GLY 142 143 143 GLY GLY A . n
A 1 143 ALA 143 144 144 ALA ALA A . n
A 1 144 ALA 144 145 145 ALA ALA A . n
A 1 145 ALA 145 146 146 ALA ALA A . n
A 1 146 SER 146 147 147 SER SER A . n
A 1 147 ALA 147 148 148 ALA ALA A . n
A 1 148 THR 148 149 149 THR THR A . n
A 1 149 TYR 149 150 150 TYR TYR A . n
A 1 150 SER 150 151 151 SER SER A . n
A 1 151 ALA 151 152 152 ALA ALA A . n
A 1 152 GLY 152 153 153 GLY GLY A . n
A 1 153 ARG 153 154 154 ARG ARG A . n
A 1 154 LYS 154 155 155 LYS LYS A . n
A 1 155 GLY 155 156 156 GLY GLY A . n
A 1 156 VAL 156 157 157 VAL VAL A . n
A 1 157 GLY 157 158 158 GLY GLY A . n
A 1 158 PRO 158 159 159 PRO PRO A . n
A 1 159 ALA 159 160 160 ALA ALA A . n
A 1 160 ALA 160 161 161 ALA ALA A . n
A 1 161 VAL 161 162 162 VAL VAL A . n
A 1 162 GLY 162 163 163 GLY GLY A . n
A 1 163 SER 163 164 164 SER SER A . n
A 1 164 PHE 164 165 165 PHE PHE A . n
A 1 165 ALA 165 166 166 ALA ALA A . n
A 1 166 ILE 166 167 167 ILE ILE A . n
A 1 167 PRO 167 168 168 PRO PRO A . n
A 1 168 ALA 168 169 169 ALA ALA A . n
A 1 169 PRO 169 170 170 PRO PRO A . n
A 1 170 PHE 170 171 171 PHE PHE A . n
A 1 171 THR 171 172 172 THR THR A . n
A 1 172 TYR 172 173 173 TYR TYR A . n
A 1 173 ARG 173 174 174 ARG ARG A . n
A 1 174 PRO 174 175 175 PRO PRO A . n
A 1 175 ARG 175 176 176 ARG ARG A . n
A 1 176 PHE 176 177 177 PHE PHE A . n
A 1 177 GLU 177 178 178 GLU GLU A . n
A 1 178 ARG 178 179 179 ARG ARG A . n
A 1 179 ASN 179 180 180 ASN ASN A . n
A 1 180 GLY 180 181 181 GLY GLY A . n
A 1 181 ALA 181 182 182 ALA ALA A . n
A 1 182 TYR 182 183 183 TYR TYR A . n
A 1 183 ASP 183 184 184 ASP ASP A . n
A 1 184 TYR 184 185 185 TYR TYR A . n
A 1 185 LEU 185 186 186 LEU LEU A . n
A 1 186 ALA 186 187 187 ALA ALA A . n
A 1 187 GLU 187 188 188 GLU GLU A . n
A 1 188 LEU 188 189 189 LEU LEU A . n
A 1 189 ASP 189 190 190 ASP ASP A . n
A 1 190 TYR 190 191 191 TYR TYR A . n
A 1 191 ALA 191 192 192 ALA ALA A . n
A 1 192 PHE 192 193 193 PHE PHE A . n
A 1 193 ASP 193 194 194 ASP ASP A . n
A 1 194 LEU 194 195 195 LEU LEU A . n
A 1 195 ILE 195 196 196 ILE ILE A . n
A 1 196 ASP 196 197 197 ASP ASP A . n
A 1 197 ARG 197 198 198 ARG ARG A . n
A 1 198 GLN 198 199 199 GLN GLN A . n
A 1 199 SER 199 200 200 SER SER A . n
A 1 200 SER 200 201 201 SER SER A . n
A 1 201 GLY 201 202 202 GLY GLY A . n
A 1 202 ASN 202 203 203 ASN ASN A . n
A 1 203 LEU 203 204 204 LEU LEU A . n
A 1 204 ALA 204 205 205 ALA ALA A . n
A 1 205 ALA 205 206 206 ALA ALA A . n
A 1 206 PHE 206 207 207 PHE PHE A . n
A 1 207 ILE 207 208 208 ILE ILE A . n
A 1 208 ALA 208 209 209 ALA ALA A . n
A 1 209 GLU 209 210 210 GLU GLU A . n
A 1 210 PRO 210 211 211 PRO PRO A . n
A 1 211 ILE 211 212 212 ILE ILE A . n
A 1 212 LEU 212 213 213 LEU LEU A . n
A 1 213 SER 213 214 214 SER SER A . n
A 1 214 SER 214 215 215 SER SER A . n
A 1 215 GLY 215 216 216 GLY GLY A . n
A 1 216 GLY 216 217 217 GLY GLY A . n
A 1 217 ILE 217 218 218 ILE ILE A . n
A 1 218 ILE 218 219 219 ILE ILE A . n
A 1 219 GLU 219 220 220 GLU GLU A . n
A 1 220 LEU 220 221 221 LEU LEU A . n
A 1 221 PRO 221 222 222 PRO PRO A . n
A 1 222 ASP 222 223 223 ASP ASP A . n
A 1 223 GLY 223 224 224 GLY GLY A . n
A 1 224 TYR 224 225 225 TYR TYR A . n
A 1 225 MET 225 226 226 MET MET A . n
A 1 226 ALA 226 227 227 ALA ALA A . n
A 1 227 ALA 227 228 228 ALA ALA A . n
A 1 228 LEU 228 229 229 LEU LEU A . n
A 1 229 LYS 229 230 230 LYS LYS A . n
A 1 230 ARG 230 231 231 ARG ARG A . n
A 1 231 LYS 231 232 232 LYS LYS A . n
A 1 232 CYS 232 233 233 CYS CYS A . n
A 1 233 GLU 233 234 234 GLU GLU A . n
A 1 234 ALA 234 235 235 ALA ALA A . n
A 1 235 ARG 235 236 236 ARG ARG A . n
A 1 236 GLY 236 237 237 GLY GLY A . n
A 1 237 MET 237 238 238 MET MET A . n
A 1 238 LEU 238 239 239 LEU LEU A . n
A 1 239 LEU 239 240 240 LEU LEU A . n
A 1 240 ILE 240 241 241 ILE ILE A . n
A 1 241 LEU 241 242 242 LEU LEU A . n
A 1 242 ASP 242 243 243 ASP ASP A . n
A 1 243 GLU 243 244 244 GLU GLU A . n
A 1 244 ALA 244 245 245 ALA ALA A . n
A 1 245 GLN 245 246 246 GLN GLN A . n
A 1 246 THR 246 247 247 THR THR A . n
A 1 247 GLY 247 248 248 GLY GLY A . n
A 1 248 VAL 248 249 249 VAL VAL A . n
A 1 249 GLY 249 250 250 GLY GLY A . n
A 1 250 ARG 250 251 251 ARG ARG A . n
A 1 251 THR 251 252 252 THR THR A . n
A 1 252 GLY 252 253 253 GLY GLY A . n
A 1 253 THR 253 254 254 THR THR A . n
A 1 254 MET 254 255 255 MET MET A . n
A 1 255 PHE 255 256 256 PHE PHE A . n
A 1 256 ALA 256 257 257 ALA ALA A . n
A 1 257 CYS 257 258 258 CYS CYS A . n
A 1 258 GLN 258 259 259 GLN GLN A . n
A 1 259 ARG 259 260 260 ARG ARG A . n
A 1 260 ASP 260 261 261 ASP ASP A . n
A 1 261 GLY 261 262 262 GLY GLY A . n
A 1 262 VAL 262 263 263 VAL VAL A . n
A 1 263 THR 263 264 264 THR THR A . n
A 1 264 PRO 264 265 265 PRO PRO A . n
A 1 265 ASP 265 266 266 ASP ASP A . n
A 1 266 ILE 266 267 267 ILE ILE A . n
A 1 267 LEU 267 268 268 LEU LEU A . n
A 1 268 THR 268 269 269 THR THR A . n
A 1 269 LEU 269 270 270 LEU LEU A . n
A 1 270 SER 270 271 271 SER SER A . n
A 1 271 LYS 271 272 272 LYS LYS A . n
A 1 272 THR 272 273 273 THR THR A . n
A 1 273 LEU 273 274 274 LEU LEU A . n
A 1 274 GLY 274 275 275 GLY GLY A . n
A 1 275 ALA 275 276 276 ALA ALA A . n
A 1 276 GLY 276 277 277 GLY GLY A . n
A 1 277 LEU 277 278 278 LEU LEU A . n
A 1 278 PRO 278 279 279 PRO PRO A . n
A 1 279 LEU 279 280 280 LEU LEU A . n
A 1 280 ALA 280 281 281 ALA ALA A . n
A 1 281 ALA 281 282 282 ALA ALA A . n
A 1 282 ILE 282 283 283 ILE ILE A . n
A 1 283 VAL 283 284 284 VAL VAL A . n
A 1 284 THR 284 285 285 THR THR A . n
A 1 285 SER 285 286 286 SER SER A . n
A 1 286 ALA 286 287 287 ALA ALA A . n
A 1 287 ALA 287 288 288 ALA ALA A . n
A 1 288 ILE 288 289 289 ILE ILE A . n
A 1 289 GLU 289 290 290 GLU GLU A . n
A 1 290 GLU 290 291 291 GLU GLU A . n
A 1 291 ARG 291 292 292 ARG ARG A . n
A 1 292 ALA 292 293 293 ALA ALA A . n
A 1 293 HIS 293 294 294 HIS HIS A . n
A 1 294 GLU 294 295 295 GLU GLU A . n
A 1 295 LEU 295 296 296 LEU LEU A . n
A 1 296 GLY 296 297 297 GLY GLY A . n
A 1 297 TYR 297 298 298 TYR TYR A . n
A 1 298 LEU 298 299 299 LEU LEU A . n
A 1 299 PHE 299 300 300 PHE PHE A . n
A 1 300 TYR 300 301 301 TYR TYR A . n
A 1 301 THR 301 302 302 THR THR A . n
A 1 302 THR 302 303 303 THR THR A . n
A 1 303 HIS 303 304 304 HIS HIS A . n
A 1 304 VAL 304 305 305 VAL VAL A . n
A 1 305 SER 305 306 306 SER SER A . n
A 1 306 ASP 306 307 307 ASP ASP A . n
A 1 307 PRO 307 308 308 PRO PRO A . n
A 1 308 LEU 308 309 309 LEU LEU A . n
A 1 309 PRO 309 310 310 PRO PRO A . n
A 1 310 ALA 310 311 311 ALA ALA A . n
A 1 311 ALA 311 312 312 ALA ALA A . n
A 1 312 VAL 312 313 313 VAL VAL A . n
A 1 313 GLY 313 314 314 GLY GLY A . n
A 1 314 LEU 314 315 315 LEU LEU A . n
A 1 315 ARG 315 316 316 ARG ARG A . n
A 1 316 VAL 316 317 317 VAL VAL A . n
A 1 317 LEU 317 318 318 LEU LEU A . n
A 1 318 ASP 318 319 319 ASP ASP A . n
A 1 319 VAL 319 320 320 VAL VAL A . n
A 1 320 VAL 320 321 321 VAL VAL A . n
A 1 321 GLN 321 322 322 GLN GLN A . n
A 1 322 ARG 322 323 323 ARG ARG A . n
A 1 323 ASP 323 324 324 ASP ASP A . n
A 1 324 GLY 324 325 325 GLY GLY A . n
A 1 325 LEU 325 326 326 LEU LEU A . n
A 1 326 VAL 326 327 327 VAL VAL A . n
A 1 327 ALA 327 328 328 ALA ALA A . n
A 1 328 ARG 328 329 329 ARG ARG A . n
A 1 329 ALA 329 330 330 ALA ALA A . n
A 1 330 ASN 330 331 331 ASN ASN A . n
A 1 331 VAL 331 332 332 VAL VAL A . n
A 1 332 MET 332 333 333 MET MET A . n
A 1 333 GLY 333 334 334 GLY GLY A . n
A 1 334 ASP 334 335 335 ASP ASP A . n
A 1 335 ARG 335 336 336 ARG ARG A . n
A 1 336 LEU 336 337 337 LEU LEU A . n
A 1 337 ARG 337 338 338 ARG ARG A . n
A 1 338 ARG 338 339 339 ARG ARG A . n
A 1 339 GLY 339 340 340 GLY GLY A . n
A 1 340 LEU 340 341 341 LEU LEU A . n
A 1 341 LEU 341 342 342 LEU LEU A . n
A 1 342 ASP 342 343 343 ASP ASP A . n
A 1 343 LEU 343 344 344 LEU LEU A . n
A 1 344 MET 344 345 345 MET MET A . n
A 1 345 GLU 345 346 346 GLU GLU A . n
A 1 346 ARG 346 347 347 ARG ARG A . n
A 1 347 PHE 347 348 348 PHE PHE A . n
A 1 348 ASP 348 349 349 ASP ASP A . n
A 1 349 CYS 349 350 350 CYS CYS A . n
A 1 350 ILE 350 351 351 ILE ILE A . n
A 1 351 GLY 351 352 352 GLY GLY A . n
A 1 352 ASP 352 353 353 ASP ASP A . n
A 1 353 VAL 353 354 354 VAL VAL A . n
A 1 354 ARG 354 355 355 ARG ARG A . n
A 1 355 GLY 355 356 356 GLY GLY A . n
A 1 356 ARG 356 357 357 ARG ARG A . n
A 1 357 GLY 357 358 358 GLY GLY A . n
A 1 358 LEU 358 359 359 LEU LEU A . n
A 1 359 LEU 359 360 360 LEU LEU A . n
A 1 360 LEU 360 361 361 LEU LEU A . n
A 1 361 GLY 361 362 362 GLY GLY A . n
A 1 362 VAL 362 363 363 VAL VAL A . n
A 1 363 GLU 363 364 364 GLU GLU A . n
A 1 364 ILE 364 365 365 ILE ILE A . n
A 1 365 VAL 365 366 366 VAL VAL A . n
A 1 366 LYS 366 367 367 LYS LYS A . n
A 1 367 ASP 367 368 368 ASP ASP A . n
A 1 368 ARG 368 369 369 ARG ARG A . n
A 1 369 ARG 369 370 370 ARG ARG A . n
A 1 370 THR 370 371 371 THR THR A . n
A 1 371 LYS 371 372 372 LYS LYS A . n
A 1 372 GLU 372 373 373 GLU GLU A . n
A 1 373 PRO 373 374 374 PRO PRO A . n
A 1 374 ALA 374 375 375 ALA ALA A . n
A 1 375 ASP 375 376 376 ASP ASP A . n
A 1 376 GLY 376 377 377 GLY GLY A . n
A 1 377 LEU 377 378 378 LEU LEU A . n
A 1 378 GLY 378 379 379 GLY GLY A . n
A 1 379 ALA 379 380 380 ALA ALA A . n
A 1 380 LYS 380 381 381 LYS LYS A . n
A 1 381 ILE 381 382 382 ILE ILE A . n
A 1 382 THR 382 383 383 THR THR A . n
A 1 383 ARG 383 384 384 ARG ARG A . n
A 1 384 GLU 384 385 385 GLU GLU A . n
A 1 385 CYS 385 386 386 CYS CYS A . n
A 1 386 MET 386 387 387 MET MET A . n
A 1 387 ASN 387 388 388 ASN ASN A . n
A 1 388 LEU 388 389 389 LEU LEU A . n
A 1 389 GLY 389 390 390 GLY GLY A . n
A 1 390 LEU 390 391 391 LEU LEU A . n
A 1 391 SER 391 392 392 SER SER A . n
A 1 392 MET 392 393 393 MET MET A . n
A 1 393 ASN 393 394 394 ASN ASN A . n
A 1 394 ILE 394 395 395 ILE ILE A . n
A 1 395 VAL 395 396 396 VAL VAL A . n
A 1 396 GLN 396 397 397 GLN GLN A . n
A 1 397 LEU 397 398 398 LEU LEU A . n
A 1 398 PRO 398 399 399 PRO PRO A . n
A 1 399 GLY 399 400 400 GLY GLY A . n
A 1 400 MET 400 401 401 MET MET A . n
A 1 401 GLY 401 402 402 GLY GLY A . n
A 1 402 GLY 402 403 403 GLY GLY A . n
A 1 403 VAL 403 404 404 VAL VAL A . n
A 1 404 PHE 404 405 405 PHE PHE A . n
A 1 405 ARG 405 406 406 ARG ARG A . n
A 1 406 ILE 406 407 407 ILE ILE A . n
A 1 407 ALA 407 408 408 ALA ALA A . n
A 1 408 PRO 408 409 409 PRO PRO A . n
A 1 409 PRO 409 410 410 PRO PRO A . n
A 1 410 LEU 410 411 411 LEU LEU A . n
A 1 411 THR 411 412 412 THR THR A . n
A 1 412 VAL 412 413 413 VAL VAL A . n
A 1 413 SER 413 414 414 SER SER A . n
A 1 414 GLU 414 415 415 GLU GLU A . n
A 1 415 ASP 415 416 416 ASP ASP A . n
A 1 416 GLU 416 417 417 GLU GLU A . n
A 1 417 ILE 417 418 418 ILE ILE A . n
A 1 418 ASP 418 419 419 ASP ASP A . n
A 1 419 LEU 419 420 420 LEU LEU A . n
A 1 420 GLY 420 421 421 GLY GLY A . n
A 1 421 LEU 421 422 422 LEU LEU A . n
A 1 422 SER 422 423 423 SER SER A . n
A 1 423 LEU 423 424 424 LEU LEU A . n
A 1 424 LEU 424 425 425 LEU LEU A . n
A 1 425 GLY 425 426 426 GLY GLY A . n
A 1 426 GLN 426 427 427 GLN GLN A . n
A 1 427 ALA 427 428 428 ALA ALA A . n
A 1 428 ILE 428 429 429 ILE ILE A . n
A 1 429 GLU 429 430 430 GLU GLU A . n
A 1 430 ARG 430 431 431 ARG ARG A . n
A 1 431 ALA 431 432 432 ALA ALA A . n
A 1 432 LEU 432 433 433 LEU LEU A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA 1 435 435 NA NA A .
C 3 LI 1 436 436 LI LI A .
D 4 PLP 1 437 272 PLP PLP A .
E 5 MES 1 434 434 MES MES A .
F 6 HOH 1 501 501 HOH HOH A .
F 6 HOH 2 502 502 HOH HOH A .
F 6 HOH 3 503 503 HOH HOH A .
F 6 HOH 4 504 504 HOH HOH A .
F 6 HOH 5 505 505 HOH HOH A .
F 6 HOH 6 506 506 HOH HOH A .
F 6 HOH 7 507 507 HOH HOH A .
F 6 HOH 8 508 508 HOH HOH A .
F 6 HOH 9 509 509 HOH HOH A .
F 6 HOH 10 510 510 HOH HOH A .
F 6 HOH 11 511 511 HOH HOH A .
F 6 HOH 12 512 512 HOH HOH A .
F 6 HOH 13 513 513 HOH HOH A .
F 6 HOH 14 514 514 HOH HOH A .
F 6 HOH 15 515 515 HOH HOH A .
F 6 HOH 16 516 516 HOH HOH A .
F 6 HOH 17 517 517 HOH HOH A .
F 6 HOH 18 518 518 HOH HOH A .
F 6 HOH 19 519 519 HOH HOH A .
F 6 HOH 20 520 520 HOH HOH A .
F 6 HOH 21 521 521 HOH HOH A .
F 6 HOH 22 522 522 HOH HOH A .
F 6 HOH 23 523 523 HOH HOH A .
F 6 HOH 24 524 524 HOH HOH A .
F 6 HOH 25 525 525 HOH HOH A .
F 6 HOH 26 526 526 HOH HOH A .
F 6 HOH 27 527 527 HOH HOH A .
F 6 HOH 28 528 528 HOH HOH A .
F 6 HOH 29 529 529 HOH HOH A .
F 6 HOH 30 530 530 HOH HOH A .
F 6 HOH 31 531 531 HOH HOH A .
F 6 HOH 32 532 532 HOH HOH A .
F 6 HOH 33 533 533 HOH HOH A .
F 6 HOH 34 534 534 HOH HOH A .
F 6 HOH 35 535 535 HOH HOH A .
F 6 HOH 36 536 536 HOH HOH A .
F 6 HOH 37 537 537 HOH HOH A .
F 6 HOH 38 538 538 HOH HOH A .
F 6 HOH 39 539 539 HOH HOH A .
F 6 HOH 40 540 540 HOH HOH A .
F 6 HOH 41 541 541 HOH HOH A .
F 6 HOH 42 542 542 HOH HOH A .
F 6 HOH 43 543 543 HOH HOH A .
F 6 HOH 44 544 544 HOH HOH A .
F 6 HOH 45 545 545 HOH HOH A .
F 6 HOH 46 546 546 HOH HOH A .
F 6 HOH 47 547 547 HOH HOH A .
F 6 HOH 48 548 548 HOH HOH A .
F 6 HOH 49 549 549 HOH HOH A .
F 6 HOH 50 550 550 HOH HOH A .
F 6 HOH 51 551 551 HOH HOH A .
F 6 HOH 52 552 552 HOH HOH A .
F 6 HOH 53 553 553 HOH HOH A .
F 6 HOH 54 554 554 HOH HOH A .
F 6 HOH 55 555 555 HOH HOH A .
F 6 HOH 56 556 556 HOH HOH A .
F 6 HOH 57 557 557 HOH HOH A .
F 6 HOH 58 558 558 HOH HOH A .
F 6 HOH 59 559 559 HOH HOH A .
F 6 HOH 60 560 560 HOH HOH A .
F 6 HOH 61 561 561 HOH HOH A .
F 6 HOH 62 562 562 HOH HOH A .
F 6 HOH 63 563 563 HOH HOH A .
F 6 HOH 64 564 564 HOH HOH A .
F 6 HOH 65 565 565 HOH HOH A .
F 6 HOH 66 566 566 HOH HOH A .
F 6 HOH 67 567 567 HOH HOH A .
F 6 HOH 68 568 568 HOH HOH A .
F 6 HOH 69 569 569 HOH HOH A .
F 6 HOH 70 570 570 HOH HOH A .
F 6 HOH 71 571 571 HOH HOH A .
F 6 HOH 72 572 572 HOH HOH A .
F 6 HOH 73 573 573 HOH HOH A .
F 6 HOH 74 574 574 HOH HOH A .
F 6 HOH 75 575 575 HOH HOH A .
F 6 HOH 76 576 576 HOH HOH A .
F 6 HOH 77 577 577 HOH HOH A .
F 6 HOH 78 578 578 HOH HOH A .
F 6 HOH 79 579 579 HOH HOH A .
F 6 HOH 80 580 580 HOH HOH A .
F 6 HOH 81 581 581 HOH HOH A .
F 6 HOH 82 582 582 HOH HOH A .
F 6 HOH 83 583 583 HOH HOH A .
F 6 HOH 84 584 584 HOH HOH A .
F 6 HOH 85 585 585 HOH HOH A .
F 6 HOH 86 586 586 HOH HOH A .
F 6 HOH 87 587 587 HOH HOH A .
F 6 HOH 88 588 588 HOH HOH A .
F 6 HOH 89 589 589 HOH HOH A .
F 6 HOH 90 590 590 HOH HOH A .
F 6 HOH 91 591 591 HOH HOH A .
F 6 HOH 92 592 592 HOH HOH A .
F 6 HOH 93 593 593 HOH HOH A .
F 6 HOH 94 594 594 HOH HOH A .
F 6 HOH 95 595 595 HOH HOH A .
F 6 HOH 96 596 596 HOH HOH A .
F 6 HOH 97 597 597 HOH HOH A .
F 6 HOH 98 598 598 HOH HOH A .
F 6 HOH 99 599 599 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038
0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 28.8666666667
3 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/3 0.5000000000 -0.8660254038 0.0000000000 76.3500000000 -0.8660254038
-0.5000000000 0.0000000000 132.2420791579 0.0000000000 0.0000000000 -1.0000000000 28.8666666667
4 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 76.3500000000 0.0000000000
-1.0000000000 0.0000000000 132.2420791579 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? A ALA 94 ? A ALA 95 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? A LEU 101 ? A LEU 102 ? 1_555 91.8 ?
2 O ? A ALA 94 ? A ALA 95 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? F HOH . ? A HOH 540 ? 1_555 90.8 ?
3 O ? A LEU 101 ? A LEU 102 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? F HOH . ? A HOH 540 ? 1_555 85.3 ?
4 O ? A ALA 94 ? A ALA 95 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? A PRO 98 ? A PRO 99 ? 1_555 165.7 ?
5 O ? A LEU 101 ? A LEU 102 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? A PRO 98 ? A PRO 99 ? 1_555 101.3 ?
6 O ? F HOH . ? A HOH 540 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? A PRO 98 ? A PRO 99 ? 1_555 95.9 ?
7 O ? A ALA 94 ? A ALA 95 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? A THR 97 ? A THR 98 ? 1_555 90.1 ?
8 O ? A LEU 101 ? A LEU 102 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? A THR 97 ? A THR 98 ? 1_555 156.5 ?
9 O ? F HOH . ? A HOH 540 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? A THR 97 ? A THR 98 ? 1_555 118.0 ?
10 O ? A PRO 98 ? A PRO 99 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 O ? A THR 97 ? A THR 98 ? 1_555 75.7 ?
11 O ? A ALA 94 ? A ALA 95 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 OG1 ? A THR 97 ? A THR 98 ? 1_555 71.6 ?
12 O ? A LEU 101 ? A LEU 102 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 OG1 ? A THR 97 ? A THR 98 ? 1_555 84.6 ?
13 O ? F HOH . ? A HOH 540 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 OG1 ? A THR 97 ? A THR 98 ? 1_555 159.4 ?
14 O ? A PRO 98 ? A PRO 99 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 OG1 ? A THR 97 ? A THR 98 ? 1_555 103.7 ?
15 O ? A THR 97 ? A THR 98 ? 1_555 NA ? B NA . ? A NA 435 ? 1_555 OG1 ? A THR 97 ? A THR 98 ? 1_555 73.8 ?
16 O ? F HOH . ? A HOH 552 ? 1_555 LI ? C LI . ? A LI 436 ? 1_555 O ? A LEU 77 ? A LEU 78 ? 1_555 96.5 ?
17 O ? F HOH . ? A HOH 552 ? 1_555 LI ? C LI . ? A LI 436 ? 1_555 O ? F HOH . ? A HOH 539 ? 1_555 112.9 ?
18 O ? A LEU 77 ? A LEU 78 ? 1_555 LI ? C LI . ? A LI 436 ? 1_555 O ? F HOH . ? A HOH 539 ? 1_555 96.5 ?
19 O ? F HOH . ? A HOH 552 ? 1_555 LI ? C LI . ? A LI 436 ? 1_555 OD1 ? A ASP 306 ? A ASP 307 ? 1_555 128.2 ?
20 O ? A LEU 77 ? A LEU 78 ? 1_555 LI ? C LI . ? A LI 436 ? 1_555 OD1 ? A ASP 306 ? A ASP 307 ? 1_555 118.9 ?
21 O ? F HOH . ? A HOH 539 ? 1_555 LI ? C LI . ? A LI 436 ? 1_555 OD1 ? A ASP 306 ? A ASP 307 ? 1_555 100.0 ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1994-09-30
2 'Structure model' 1 1 2008-03-03
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-11-29
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Non-polymer description'
3 3 'Structure model' 'Version format compliance'
4 4 'Structure model' Advisory
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' Other
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' pdbx_database_status
2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms
3 4 'Structure model' pdbx_unobs_or_zero_occ_residues
4 4 'Structure model' struct_conf
5 4 'Structure model' struct_conf_type
#
_pdbx_audit_revision_item.ordinal 1
_pdbx_audit_revision_item.revision_ordinal 4
_pdbx_audit_revision_item.data_content_type 'Structure model'
_pdbx_audit_revision_item.item '_pdbx_database_status.process_site'
#
_software.name TNT
_software.classification refinement
_software.version .
_software.citation_id ?
_software.pdbx_ordinal 1
#
_pdbx_entry_details.entry_id 1DGD
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details
;SEQUENCE ADVISORY NOTICE
DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE.
SWISS-PROT ENTRY NAME: DGDA_BURCE
SWISS-PROT RESIDUE PDB SEQRES
NAME NUMBER NAME CHAIN SEQ/INSERT CODE
GLN 14 HIS 15
GLU 51 GLN 52
ILE 81 MET 82
VAL 82 LEU 83
ARG 307 PRO 308
PRO 309 LEU 309
GLY 312 ALA 312
THE PUBLISHED AMINO ACID SEQUENCE (REFERENCE 1) WAS
CORRECTED AT THREE POSITIONS. RESEQUENCING OF SEVERAL
GC-RICH REGIONS OF THE DGDA GENE VERIFIED THESE CHANGES
(J.W. KELLER, PERSONAL COMMUNICATION):
GLU 52 --> GLN 52
ILE 82, VAL 83 --> MET 82, LEU 83
ARG 308, CYS 309, PRO 310, PRO 311, ALA 312, GLY 313 -->
PRO 308, LEU 309, PRO 310, ALA 311, ALA 312 (INCLUDES
A DELETION).
GLN 15 -->HIS 15 (M.D. TONEY ET AL., J. MOL. BIOL. 222:
873-875 (1991)).
;
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 CD A GLU 30 ? ? OE2 A GLU 30 ? ? 1.320 1.252 0.068 0.011 N
2 1 CD A GLU 63 ? ? OE2 A GLU 63 ? ? 1.321 1.252 0.069 0.011 N
3 1 CD A GLU 70 ? ? OE2 A GLU 70 ? ? 1.333 1.252 0.081 0.011 N
4 1 CD A GLU 113 ? ? OE1 A GLU 113 ? ? 1.325 1.252 0.073 0.011 N
5 1 CD A GLU 116 ? ? OE1 A GLU 116 ? ? 1.343 1.252 0.091 0.011 N
6 1 CD A GLU 178 ? ? OE2 A GLU 178 ? ? 1.351 1.252 0.099 0.011 N
7 1 CD A GLU 220 ? ? OE1 A GLU 220 ? ? 1.340 1.252 0.088 0.011 N
8 1 CD A GLU 291 ? ? OE1 A GLU 291 ? ? 1.329 1.252 0.077 0.011 N
9 1 CD A GLU 385 ? ? OE1 A GLU 385 ? ? 1.337 1.252 0.085 0.011 N
10 1 CD A GLU 415 ? ? OE1 A GLU 415 ? ? 1.331 1.252 0.079 0.011 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 NE A ARG 19 ? ? CZ A ARG 19 ? ? NH1 A ARG 19 ? ? 115.85 120.30 -4.45 0.50 N
2 1 CB A ASP 41 ? ? CG A ASP 41 ? ? OD2 A ASP 41 ? ? 112.06 118.30 -6.24 0.90 N
3 1 CB A ASP 47 ? ? CG A ASP 47 ? ? OD1 A ASP 47 ? ? 111.22 118.30 -7.08 0.90 N
4 1 CB A ASP 47 ? ? CG A ASP 47 ? ? OD2 A ASP 47 ? ? 124.16 118.30 5.86 0.90 N
5 1 CB A ASP 89 ? ? CG A ASP 89 ? ? OD1 A ASP 89 ? ? 123.93 118.30 5.63 0.90 N
6 1 CB A ASP 89 ? ? CG A ASP 89 ? ? OD2 A ASP 89 ? ? 111.18 118.30 -7.12 0.90 N
7 1 NE A ARG 93 ? ? CZ A ARG 93 ? ? NH2 A ARG 93 ? ? 116.36 120.30 -3.94 0.50 N
8 1 CB A ASP 103 ? ? CG A ASP 103 ? ? OD2 A ASP 103 ? ? 112.39 118.30 -5.91 0.90 N
9 1 NE A ARG 120 ? ? CZ A ARG 120 ? ? NH1 A ARG 120 ? ? 117.20 120.30 -3.10 0.50 N
10 1 C A ARG 174 ? ? N A PRO 175 ? ? CD A PRO 175 ? ? 112.65 128.40 -15.75 2.10 Y
11 1 CB A ASP 184 ? ? CG A ASP 184 ? ? OD2 A ASP 184 ? ? 112.47 118.30 -5.83 0.90 N
12 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD1 A ASP 190 ? ? 123.87 118.30 5.57 0.90 N
13 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD2 A ASP 190 ? ? 110.36 118.30 -7.94 0.90 N
14 1 CB A ASP 197 ? ? CG A ASP 197 ? ? OD1 A ASP 197 ? ? 124.24 118.30 5.94 0.90 N
15 1 CB A ASP 223 ? ? CG A ASP 223 ? ? OD1 A ASP 223 ? ? 112.20 118.30 -6.10 0.90 N
16 1 CA A MET 226 ? ? CB A MET 226 ? ? CG A MET 226 ? ? 99.61 113.30 -13.69 1.70 N
17 1 CB A ASP 307 ? ? CG A ASP 307 ? ? OD1 A ASP 307 ? ? 125.21 118.30 6.91 0.90 N
18 1 CB A ASP 307 ? ? CG A ASP 307 ? ? OD2 A ASP 307 ? ? 111.18 118.30 -7.12 0.90 N
19 1 CB A ASP 319 ? ? CG A ASP 319 ? ? OD2 A ASP 319 ? ? 112.18 118.30 -6.12 0.90 N
20 1 NE A ARG 323 ? ? CZ A ARG 323 ? ? NH1 A ARG 323 ? ? 124.20 120.30 3.90 0.50 N
21 1 NE A ARG 323 ? ? CZ A ARG 323 ? ? NH2 A ARG 323 ? ? 115.04 120.30 -5.26 0.50 N
22 1 CB A ASP 324 ? ? CG A ASP 324 ? ? OD2 A ASP 324 ? ? 112.40 118.30 -5.90 0.90 N
23 1 CB A ASP 343 ? ? CG A ASP 343 ? ? OD1 A ASP 343 ? ? 125.37 118.30 7.07 0.90 N
24 1 CB A ASP 343 ? ? CG A ASP 343 ? ? OD2 A ASP 343 ? ? 111.54 118.30 -6.76 0.90 N
25 1 CB A ASP 349 ? ? CG A ASP 349 ? ? OD1 A ASP 349 ? ? 111.65 118.30 -6.65 0.90 N
26 1 CB A ASP 368 ? ? CG A ASP 368 ? ? OD1 A ASP 368 ? ? 111.67 118.30 -6.63 0.90 N
27 1 CB A ASP 368 ? ? CG A ASP 368 ? ? OD2 A ASP 368 ? ? 124.16 118.30 5.86 0.90 N
28 1 CB A ASP 419 ? ? CG A ASP 419 ? ? OD1 A ASP 419 ? ? 124.97 118.30 6.67 0.90 N
29 1 CB A ASP 419 ? ? CG A ASP 419 ? ? OD2 A ASP 419 ? ? 111.89 118.30 -6.41 0.90 N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ASP A 5 ? ? -92.09 47.06
2 1 PRO A 26 ? ? -90.78 47.16
3 1 GLN A 52 ? ? -96.69 59.58
4 1 ALA A 55 ? ? -52.91 61.16
5 1 LEU A 108 ? ? -119.62 -157.28
6 1 SER A 271 ? ? -167.00 -80.63
7 1 PHE A 300 ? ? -153.03 88.15
8 1 LEU A 359 ? ? -107.77 41.58
9 1 ALA A 408 ? ? -166.36 77.46
#
_pdbx_unobs_or_zero_occ_residues.id 1
_pdbx_unobs_or_zero_occ_residues.PDB_model_num 1
_pdbx_unobs_or_zero_occ_residues.polymer_flag Y
_pdbx_unobs_or_zero_occ_residues.occupancy_flag 1
_pdbx_unobs_or_zero_occ_residues.auth_asym_id A
_pdbx_unobs_or_zero_occ_residues.auth_comp_id SER
_pdbx_unobs_or_zero_occ_residues.auth_seq_id 2
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_residues.label_asym_id A
_pdbx_unobs_or_zero_occ_residues.label_comp_id SER
_pdbx_unobs_or_zero_occ_residues.label_seq_id 1
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'SODIUM ION' NA
3 'LITHIUM ION' LI
4 "PYRIDOXAL-5'-PHOSPHATE" PLP
5 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES
6 water HOH
#