HEADER RIBOSOME 27-NOV-99 1DGZ TITLE RIBOSMAL PROTEIN L36 FROM THERMUS THERMOPHILUS: NMR STRUCTURE ENSEMBLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (L36 RIBOSOMAL PROTEIN); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBOSOMAL PROTEIN, LARGE RIBOSOMAL SUBUNIT, ZINC BINDING, BETA SHEET, KEYWDS 2 RIBOSOME EXPDTA SOLUTION NMR NUMMDL 38 AUTHOR T.HARD,A.RAK,P.ALLARD,L.KLOO,M.GARBER REVDAT 4 16-FEB-22 1DGZ 1 REMARK LINK REVDAT 3 24-FEB-09 1DGZ 1 VERSN REVDAT 2 16-FEB-00 1DGZ 1 JRNL REMARK REVDAT 1 08-DEC-99 1DGZ 0 JRNL AUTH T.HARD,A.RAK,P.ALLARD,L.KLOO,M.GARBER JRNL TITL THE SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN L36 FROM THERMUS JRNL TITL 2 THERMOPHILUS REVEALS A ZINC-RIBBON-LIKE FOLD. JRNL REF J.MOL.BIOL. V. 296 169 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10656825 JRNL DOI 10.1006/JMBI.1999.3433 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DGZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000010082. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 38 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON- BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 13 OE1 GLU A 28 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 19.18 -168.89 REMARK 500 1 SER A 6 83.23 -69.28 REMARK 500 1 LYS A 8 136.17 -38.57 REMARK 500 1 HIS A 20 89.93 -47.80 REMARK 500 1 GLN A 36 97.90 -62.17 REMARK 500 2 LYS A 8 140.95 -38.86 REMARK 500 2 CYS A 11 -158.56 -121.06 REMARK 500 2 HIS A 20 88.17 -48.33 REMARK 500 3 VAL A 3 -65.59 -107.71 REMARK 500 3 ARG A 4 -42.23 -153.67 REMARK 500 3 SER A 6 56.51 -143.65 REMARK 500 3 CYS A 11 -160.76 -162.27 REMARK 500 3 HIS A 20 -89.20 1.52 REMARK 500 4 ARG A 4 -37.09 -139.41 REMARK 500 4 HIS A 20 -81.61 0.67 REMARK 500 5 ARG A 4 -97.91 -103.83 REMARK 500 5 ALA A 5 -67.59 -164.82 REMARK 500 5 LYS A 8 133.90 -36.73 REMARK 500 5 ARG A 19 -156.26 -150.57 REMARK 500 5 HIS A 20 76.86 -19.36 REMARK 500 6 ALA A 5 -92.37 -153.06 REMARK 500 6 CYS A 11 -150.50 -128.67 REMARK 500 6 ARG A 19 -154.74 -145.03 REMARK 500 6 HIS A 20 86.52 -44.54 REMARK 500 7 ARG A 4 -91.54 -95.07 REMARK 500 7 ALA A 5 54.58 -163.68 REMARK 500 7 SER A 6 53.02 -147.34 REMARK 500 7 LYS A 8 150.74 -43.47 REMARK 500 7 CYS A 11 -154.44 -150.36 REMARK 500 7 ARG A 19 -154.10 -134.03 REMARK 500 7 HIS A 20 82.17 -46.63 REMARK 500 8 VAL A 3 -91.51 -128.75 REMARK 500 8 ARG A 4 4.37 -168.86 REMARK 500 8 CYS A 11 -167.93 -105.09 REMARK 500 8 ARG A 19 -159.07 -142.94 REMARK 500 8 HIS A 20 85.46 -41.24 REMARK 500 9 ARG A 4 -80.71 -104.29 REMARK 500 9 ALA A 5 -56.21 -161.61 REMARK 500 9 CYS A 11 -158.96 -126.13 REMARK 500 9 HIS A 20 -80.75 1.06 REMARK 500 10 LYS A 2 109.83 -164.55 REMARK 500 10 CYS A 11 -168.15 -111.51 REMARK 500 10 HIS A 20 -86.62 0.75 REMARK 500 11 LYS A 2 34.71 -83.82 REMARK 500 11 ASP A 12 31.55 -81.82 REMARK 500 11 ARG A 19 -152.91 -129.57 REMARK 500 11 HIS A 20 85.42 -45.49 REMARK 500 12 VAL A 3 -80.14 -134.07 REMARK 500 12 SER A 6 48.45 -156.86 REMARK 500 12 LYS A 8 154.39 -42.28 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 38 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 14 SG 110.4 REMARK 620 3 CYS A 27 SG 109.5 108.6 REMARK 620 4 HIS A 32 ND1 110.8 107.5 110.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 38 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DFE RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE DBREF 1DGZ A 1 37 UNP P80256 RL36_THETH 1 37 SEQRES 1 A 37 MET LYS VAL ARG ALA SER VAL LYS ARG ILE CYS ASP LYS SEQRES 2 A 37 CYS LYS VAL ILE ARG ARG HIS GLY ARG VAL TYR VAL ILE SEQRES 3 A 37 CYS GLU ASN PRO LYS HIS LYS GLN ARG GLN GLY HET ZN A 38 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ASN A 29 LYS A 33 5 5 SHEET 1 A 3 LYS A 15 ARG A 18 0 SHEET 2 A 3 VAL A 23 ILE A 26 -1 N TYR A 24 O ILE A 17 SHEET 3 A 3 GLN A 34 ARG A 35 -1 O GLN A 34 N VAL A 25 LINK SG CYS A 11 ZN ZN A 38 1555 1555 2.30 LINK SG CYS A 14 ZN ZN A 38 1555 1555 2.30 LINK SG CYS A 27 ZN ZN A 38 1555 1555 2.29 LINK ND1 HIS A 32 ZN ZN A 38 1555 1555 2.00 SITE 1 AC1 4 CYS A 11 CYS A 14 CYS A 27 HIS A 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1