HEADER OXIDOREDUCTASE 14-SEP-94 1DIH TITLE THREE-DIMENSIONAL STRUCTURE OF E. COLI DIHYDRODIPICOLINATE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.1.26; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.SCAPIN,J.S.BLANCHARD,J.C.SACCHETTINI REVDAT 7 07-FEB-24 1DIH 1 REMARK REVDAT 6 14-AUG-19 1DIH 1 REMARK REVDAT 5 17-JUL-19 1DIH 1 REMARK REVDAT 4 13-JUL-11 1DIH 1 VERSN REVDAT 3 24-FEB-09 1DIH 1 VERSN REVDAT 2 01-APR-03 1DIH 1 JRNL REVDAT 1 15-SEP-95 1DIH 0 JRNL AUTH G.SCAPIN,J.S.BLANCHARD,J.C.SACCHETTINI JRNL TITL THREE-DIMENSIONAL STRUCTURE OF ESCHERICHIA COLI JRNL TITL 2 DIHYDRODIPICOLINATE REDUCTASE. JRNL REF BIOCHEMISTRY V. 34 3502 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7893645 JRNL DOI 10.1021/BI00011A003 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.REDDY,J.C.SACCHETTINI,J.S.BLANCHARD REMARK 1 TITL EXPRESSION, PURIFICATION AND CHARACTERIZATION OF E. COLI REMARK 1 TITL 2 DIHYDRODIPICOLINATE REDUCTASE REMARK 1 REF BIOCHEMISTRY V. 34 3492 1995 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 13459 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1979 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.85000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.10000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.85000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.10000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.85000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.60000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.10000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.85000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.60000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.70000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 75.70000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 94.20000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 94.20000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 2 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 SER A 42 OG REMARK 470 SER A 47 OG REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 29 CD GLU A 29 OE2 0.076 REMARK 500 GLU A 51 CD GLU A 51 OE2 0.090 REMARK 500 GLU A 83 CD GLU A 83 OE2 0.072 REMARK 500 GLU A 108 CD GLU A 108 OE2 0.087 REMARK 500 GLU A 141 CD GLU A 141 OE2 0.092 REMARK 500 GLU A 195 CD GLU A 195 OE2 0.079 REMARK 500 GLU A 200 CD GLU A 200 OE2 0.084 REMARK 500 GLU A 219 CD GLU A 219 OE2 -0.073 REMARK 500 GLU A 229 CD GLU A 229 OE2 -0.071 REMARK 500 GLU A 258 CD GLU A 258 OE1 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 48 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 67 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 71 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 72 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 THR A 80 CA - CB - CG2 ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 120 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 149 CA - CB - CG ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 165 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 188 CB - CG - OD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 212 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 215 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 226 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 230 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 249 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 263 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 266 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 109.70 79.43 REMARK 500 ALA A 4 137.95 -179.99 REMARK 500 ASN A 5 -37.92 -2.29 REMARK 500 ALA A 13 -35.50 -35.17 REMARK 500 LEU A 33 90.74 -60.07 REMARK 500 GLU A 40 -68.58 -4.02 REMARK 500 SER A 42 118.38 -22.06 REMARK 500 ASP A 48 24.02 158.53 REMARK 500 ALA A 49 103.62 -25.42 REMARK 500 GLU A 51 55.34 -149.62 REMARK 500 ALA A 55 27.15 99.51 REMARK 500 GLN A 63 -164.60 -108.59 REMARK 500 SER A 64 -13.06 -141.99 REMARK 500 VAL A 69 5.22 -156.21 REMARK 500 LYS A 70 -2.22 -57.03 REMARK 500 THR A 80 -115.08 -133.54 REMARK 500 ASP A 188 56.58 -104.28 REMARK 500 CYS A 189 -4.57 169.01 REMARK 500 SER A 255 97.88 -48.02 REMARK 500 GLU A 258 4.54 -159.10 REMARK 500 SER A 259 -154.36 -74.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 247 -11.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: SI1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 301 DBREF 1DIH A 1 273 UNP P04036 DAPB_ECOLI 1 273 SEQRES 1 A 273 MET HIS ASP ALA ASN ILE ARG VAL ALA ILE ALA GLY ALA SEQRES 2 A 273 GLY GLY ARG MET GLY ARG GLN LEU ILE GLN ALA ALA LEU SEQRES 3 A 273 ALA LEU GLU GLY VAL GLN LEU GLY ALA ALA LEU GLU ARG SEQRES 4 A 273 GLU GLY SER SER LEU LEU GLY SER ASP ALA GLY GLU LEU SEQRES 5 A 273 ALA GLY ALA GLY LYS THR GLY VAL THR VAL GLN SER SER SEQRES 6 A 273 LEU ASP ALA VAL LYS ASP ASP PHE ASP VAL PHE ILE ASP SEQRES 7 A 273 PHE THR ARG PRO GLU GLY THR LEU ASN HIS LEU ALA PHE SEQRES 8 A 273 CYS ARG GLN HIS GLY LYS GLY MET VAL ILE GLY THR THR SEQRES 9 A 273 GLY PHE ASP GLU ALA GLY LYS GLN ALA ILE ARG ASP ALA SEQRES 10 A 273 ALA ALA ASP ILE ALA ILE VAL PHE ALA ALA ASN PHE SER SEQRES 11 A 273 VAL GLY VAL ASN VAL MET LEU LYS LEU LEU GLU LYS ALA SEQRES 12 A 273 ALA LYS VAL MET GLY ASP TYR THR ASP ILE GLU ILE ILE SEQRES 13 A 273 GLU ALA HIS HIS ARG HIS LYS VAL ASP ALA PRO SER GLY SEQRES 14 A 273 THR ALA LEU ALA MET GLY GLU ALA ILE ALA HIS ALA LEU SEQRES 15 A 273 ASP LYS ASP LEU LYS ASP CYS ALA VAL TYR SER ARG GLU SEQRES 16 A 273 GLY HIS THR GLY GLU ARG VAL PRO GLY THR ILE GLY PHE SEQRES 17 A 273 ALA THR VAL ARG ALA GLY ASP ILE VAL GLY GLU HIS THR SEQRES 18 A 273 ALA MET PHE ALA ASP ILE GLY GLU ARG LEU GLU ILE THR SEQRES 19 A 273 HIS LYS ALA SER SER ARG MET THR PHE ALA ASN GLY ALA SEQRES 20 A 273 VAL ARG SER ALA LEU TRP LEU SER GLY LYS GLU SER GLY SEQRES 21 A 273 LEU PHE ASP MET ARG ASP VAL LEU ASP LEU ASN ASN LEU HET NDP A 301 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 HOH *59(H2 O) HELIX 1 A1 ARG A 19 ALA A 27 1 9 HELIX 2 A2 GLU A 83 GLN A 94 1 12 HELIX 3 A3 GLU A 108 ALA A 119 1 12 HELIX 4 A4 VAL A 131 MET A 147 1 17 HELIX 5 A5 GLY A 169 ALA A 181 1 13 HELIX 6 A6 MET A 241 LEU A 254 1 14 HELIX 7 A7 ARG A 265 LEU A 273 1 9 SHEET 1 A 7 VAL A 60 SER A 64 0 SHEET 2 A 7 GLN A 32 LEU A 37 1 O ALA A 36 N GLN A 63 SHEET 3 A 7 ASN A 5 ALA A 11 1 N ILE A 10 O ALA A 35 SHEET 4 A 7 VAL A 75 PHE A 79 1 N ILE A 77 O ALA A 9 SHEET 5 A 7 LYS A 97 THR A 103 1 N GLY A 102 O ASP A 78 SHEET 6 A 7 ILE A 121 ALA A 126 1 N ALA A 126 O ILE A 101 SHEET 7 A 7 LYS A 257 MET A 264 1 N PHE A 262 O ILE A 123 SHEET 1 B 4 GLU A 229 SER A 238 0 SHEET 2 B 4 VAL A 217 ASP A 226 -1 N PHE A 224 O LEU A 231 SHEET 3 B 4 THR A 151 HIS A 160 -1 N ILE A 156 O THR A 221 SHEET 4 B 4 THR A 205 ALA A 213 1 N ALA A 209 O ILE A 155 CISPEP 1 ALA A 166 PRO A 167 0 2.15 SITE 1 SI1 15 THR A 80 GLY A 102 THR A 104 ALA A 126 SITE 2 SI1 15 ALA A 127 PHE A 129 ARG A 16 MET A 17 SITE 3 SI1 15 ARG A 81 ARG A 240 GLY A 12 GLY A 15 SITE 4 SI1 15 GLU A 38 ARG A 39 GLY A 84 SITE 1 AC1 20 GLY A 12 GLY A 15 ARG A 16 MET A 17 SITE 2 AC1 20 GLU A 38 ARG A 39 PHE A 79 THR A 80 SITE 3 AC1 20 ARG A 81 GLU A 83 GLY A 84 GLY A 102 SITE 4 AC1 20 THR A 103 THR A 104 ALA A 126 ALA A 127 SITE 5 AC1 20 ASN A 128 PHE A 129 ARG A 240 PHE A 243 CRYST1 75.700 81.200 94.200 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013210 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010616 0.00000