HEADER TRANSFERASE 06-DEC-99 1DJU TITLE CRYSTAL STRUCTURE OF AROMATIC AMINOTRANSFERASE FROM PYROCOCCUS TITLE 2 HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET-11A KEYWDS ALPHA/BETA/ALPHA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.MATSUI,E.MATSUI,Y.SAKAI,H.KIKUCHI,H.KAWARABAYASHI REVDAT 6 18-APR-18 1DJU 1 REMARK REVDAT 5 04-OCT-17 1DJU 1 REMARK REVDAT 4 13-JUL-11 1DJU 1 VERSN REVDAT 3 24-FEB-09 1DJU 1 VERSN REVDAT 2 01-APR-03 1DJU 1 JRNL REVDAT 1 11-APR-01 1DJU 0 JRNL AUTH I.MATSUI,E.MATSUI,Y.SAKAI,H.KIKUCHI,Y.KAWARABAYASI,H.URA, JRNL AUTH 2 S.KAWAGUCHI,S.KURAMITSU,K.HARATA JRNL TITL THE MOLECULAR STRUCTURE OF HYPERTHERMOSTABLE AROMATIC JRNL TITL 2 AMINOTRANSFERASE WITH NOVEL SUBSTRATE SPECIFICITY FROM JRNL TITL 3 PYROCOCCUS HORIKOSHII. JRNL REF J.BIOL.CHEM. V. 275 4871 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10671523 JRNL DOI 10.1074/JBC.275.7.4871 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 47508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2873 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5952 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 3.240 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ENERGY MINIMIZATION REMARK 4 REMARK 4 1DJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-98 REMARK 200 TEMPERATURE (KELVIN) : 286 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR571 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : ENRAF-NONIUS FAST REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MADNESS REMARK 200 DATA SCALING SOFTWARE : MERGEF REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57422 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MIRPHS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1,6-HEXANE-DI-OL, MAGNESIUM CHLORIDE, REMARK 280 PYRIDOXAL-5'-PHOSPHATE, HEPES, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.00500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 ILE A 15 REMARK 465 ARG A 16 REMARK 465 LYS A 17 REMARK 465 LEU A 18 REMARK 465 PHE A 19 REMARK 465 ASP A 20 REMARK 465 ILE A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 MET A 25 REMARK 465 ALA B 12 REMARK 465 SER B 13 REMARK 465 GLU B 14 REMARK 465 ILE B 15 REMARK 465 ARG B 16 REMARK 465 LYS B 17 REMARK 465 LEU B 18 REMARK 465 PHE B 19 REMARK 465 ASP B 20 REMARK 465 ILE B 21 REMARK 465 ALA B 22 REMARK 465 ALA B 23 REMARK 465 GLY B 24 REMARK 465 MET B 25 REMARK 465 LYS B 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 43 NE2 HIS A 43 CD2 -0.079 REMARK 500 HIS A 192 NE2 HIS A 192 CD2 -0.074 REMARK 500 HIS A 204 NE2 HIS A 204 CD2 -0.074 REMARK 500 HIS A 212 NE2 HIS A 212 CD2 -0.075 REMARK 500 HIS B 43 NE2 HIS B 43 CD2 -0.068 REMARK 500 HIS B 58 NE2 HIS B 58 CD2 -0.068 REMARK 500 HIS B 204 NE2 HIS B 204 CD2 -0.076 REMARK 500 HIS B 212 NE2 HIS B 212 CD2 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 59 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET A 102 CG - SD - CE ANGL. DEV. = -17.4 DEGREES REMARK 500 ASP A 110 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 GLU A 143 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 THR A 173 N - CA - CB ANGL. DEV. = -15.1 DEGREES REMARK 500 VAL A 196 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TRP A 240 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 240 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 241 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 TRP A 250 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP A 250 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 282 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TRP A 284 CD1 - CG - CD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 TRP A 284 CG - CD1 - NE1 ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP A 284 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 298 CB - CG - CD ANGL. DEV. = -18.1 DEGREES REMARK 500 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 298 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP A 302 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 302 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 304 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 344 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 VAL A 361 CG1 - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 VAL A 361 CA - CB - CG2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG A 386 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 6 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 THR B 57 N - CA - CB ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 69 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 MET B 102 CG - SD - CE ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG B 147 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASN B 149 N - CA - CB ANGL. DEV. = -11.3 DEGREES REMARK 500 THR B 173 N - CA - CB ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP B 199 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 211 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR B 213 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 224 CA - CB - CG ANGL. DEV. = 25.8 DEGREES REMARK 500 ARG B 224 CB - CG - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG B 224 NH1 - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG B 224 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP B 240 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP B 240 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 241 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TRP B 250 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 88 -32.18 -137.60 REMARK 500 PHE A 107 -25.25 -153.06 REMARK 500 ASP A 208 -120.40 53.07 REMARK 500 ASN A 262 -101.75 -133.07 REMARK 500 THR A 264 -53.34 61.50 REMARK 500 ALA A 318 -152.53 59.98 REMARK 500 PHE A 319 43.48 -146.01 REMARK 500 PHE B 107 -20.23 -145.46 REMARK 500 ASP B 208 -126.95 52.33 REMARK 500 ASP B 219 103.21 -14.35 REMARK 500 ASN B 262 -103.69 -125.07 REMARK 500 THR B 264 -58.12 65.99 REMARK 500 ALA B 318 -154.87 61.23 REMARK 500 ALA B 366 54.57 -95.06 REMARK 500 ARG B 386 29.96 -78.47 REMARK 500 LYS B 387 42.34 38.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 400 DBREF 1DJU A 2 389 UNP O59096 O59096_PYRHO 2 389 DBREF 1DJU B 2 389 UNP O59096 O59096_PYRHO 2 389 SEQADV 1DJU GLU A 377 UNP O59096 ASP 377 CONFLICT SEQADV 1DJU GLU B 377 UNP O59096 ASP 377 CONFLICT SEQRES 1 A 388 ALA LEU SER ASP ARG LEU GLU LEU VAL SER ALA SER GLU SEQRES 2 A 388 ILE ARG LYS LEU PHE ASP ILE ALA ALA GLY MET LYS ASP SEQRES 3 A 388 VAL ILE SER LEU GLY ILE GLY GLU PRO ASP PHE ASP THR SEQRES 4 A 388 PRO GLN HIS ILE LYS GLU TYR ALA LYS GLU ALA LEU ASP SEQRES 5 A 388 LYS GLY LEU THR HIS TYR GLY PRO ASN ILE GLY LEU LEU SEQRES 6 A 388 GLU LEU ARG GLU ALA ILE ALA GLU LYS LEU LYS LYS GLN SEQRES 7 A 388 ASN GLY ILE GLU ALA ASP PRO LYS THR GLU ILE MET VAL SEQRES 8 A 388 LEU LEU GLY ALA ASN GLN ALA PHE LEU MET GLY LEU SER SEQRES 9 A 388 ALA PHE LEU LYS ASP GLY GLU GLU VAL LEU ILE PRO THR SEQRES 10 A 388 PRO ALA PHE VAL SER TYR ALA PRO ALA VAL ILE LEU ALA SEQRES 11 A 388 GLY GLY LYS PRO VAL GLU VAL PRO THR TYR GLU GLU ASP SEQRES 12 A 388 GLU PHE ARG LEU ASN VAL ASP GLU LEU LYS LYS TYR VAL SEQRES 13 A 388 THR ASP LYS THR ARG ALA LEU ILE ILE ASN SER PRO CYS SEQRES 14 A 388 ASN PRO THR GLY ALA VAL LEU THR LYS LYS ASP LEU GLU SEQRES 15 A 388 GLU ILE ALA ASP PHE VAL VAL GLU HIS ASP LEU ILE VAL SEQRES 16 A 388 ILE SER ASP GLU VAL TYR GLU HIS PHE ILE TYR ASP ASP SEQRES 17 A 388 ALA ARG HIS TYR SER ILE ALA SER LEU ASP GLY MET PHE SEQRES 18 A 388 GLU ARG THR ILE THR VAL ASN GLY PHE SER LYS THR PHE SEQRES 19 A 388 ALA MET THR GLY TRP ARG LEU GLY PHE VAL ALA ALA PRO SEQRES 20 A 388 SER TRP ILE ILE GLU ARG MET VAL LYS PHE GLN MET TYR SEQRES 21 A 388 ASN ALA THR CYS PRO VAL THR PHE ILE GLN TYR ALA ALA SEQRES 22 A 388 ALA LYS ALA LEU LYS ASP GLU ARG SER TRP LYS ALA VAL SEQRES 23 A 388 GLU GLU MET ARG LYS GLU TYR ASP ARG ARG ARG LYS LEU SEQRES 24 A 388 VAL TRP LYS ARG LEU ASN GLU MET GLY LEU PRO THR VAL SEQRES 25 A 388 LYS PRO LYS GLY ALA PHE TYR ILE PHE PRO ARG ILE ARG SEQRES 26 A 388 ASP THR GLY LEU THR SER LYS LYS PHE SER GLU LEU MET SEQRES 27 A 388 LEU LYS GLU ALA ARG VAL ALA VAL VAL PRO GLY SER ALA SEQRES 28 A 388 PHE GLY LYS ALA GLY GLU GLY TYR VAL ARG ILE SER TYR SEQRES 29 A 388 ALA THR ALA TYR GLU LYS LEU GLU GLU ALA MET GLU ARG SEQRES 30 A 388 MET GLU ARG VAL LEU LYS GLU ARG LYS LEU VAL SEQRES 1 B 388 ALA LEU SER ASP ARG LEU GLU LEU VAL SER ALA SER GLU SEQRES 2 B 388 ILE ARG LYS LEU PHE ASP ILE ALA ALA GLY MET LYS ASP SEQRES 3 B 388 VAL ILE SER LEU GLY ILE GLY GLU PRO ASP PHE ASP THR SEQRES 4 B 388 PRO GLN HIS ILE LYS GLU TYR ALA LYS GLU ALA LEU ASP SEQRES 5 B 388 LYS GLY LEU THR HIS TYR GLY PRO ASN ILE GLY LEU LEU SEQRES 6 B 388 GLU LEU ARG GLU ALA ILE ALA GLU LYS LEU LYS LYS GLN SEQRES 7 B 388 ASN GLY ILE GLU ALA ASP PRO LYS THR GLU ILE MET VAL SEQRES 8 B 388 LEU LEU GLY ALA ASN GLN ALA PHE LEU MET GLY LEU SER SEQRES 9 B 388 ALA PHE LEU LYS ASP GLY GLU GLU VAL LEU ILE PRO THR SEQRES 10 B 388 PRO ALA PHE VAL SER TYR ALA PRO ALA VAL ILE LEU ALA SEQRES 11 B 388 GLY GLY LYS PRO VAL GLU VAL PRO THR TYR GLU GLU ASP SEQRES 12 B 388 GLU PHE ARG LEU ASN VAL ASP GLU LEU LYS LYS TYR VAL SEQRES 13 B 388 THR ASP LYS THR ARG ALA LEU ILE ILE ASN SER PRO CYS SEQRES 14 B 388 ASN PRO THR GLY ALA VAL LEU THR LYS LYS ASP LEU GLU SEQRES 15 B 388 GLU ILE ALA ASP PHE VAL VAL GLU HIS ASP LEU ILE VAL SEQRES 16 B 388 ILE SER ASP GLU VAL TYR GLU HIS PHE ILE TYR ASP ASP SEQRES 17 B 388 ALA ARG HIS TYR SER ILE ALA SER LEU ASP GLY MET PHE SEQRES 18 B 388 GLU ARG THR ILE THR VAL ASN GLY PHE SER LYS THR PHE SEQRES 19 B 388 ALA MET THR GLY TRP ARG LEU GLY PHE VAL ALA ALA PRO SEQRES 20 B 388 SER TRP ILE ILE GLU ARG MET VAL LYS PHE GLN MET TYR SEQRES 21 B 388 ASN ALA THR CYS PRO VAL THR PHE ILE GLN TYR ALA ALA SEQRES 22 B 388 ALA LYS ALA LEU LYS ASP GLU ARG SER TRP LYS ALA VAL SEQRES 23 B 388 GLU GLU MET ARG LYS GLU TYR ASP ARG ARG ARG LYS LEU SEQRES 24 B 388 VAL TRP LYS ARG LEU ASN GLU MET GLY LEU PRO THR VAL SEQRES 25 B 388 LYS PRO LYS GLY ALA PHE TYR ILE PHE PRO ARG ILE ARG SEQRES 26 B 388 ASP THR GLY LEU THR SER LYS LYS PHE SER GLU LEU MET SEQRES 27 B 388 LEU LYS GLU ALA ARG VAL ALA VAL VAL PRO GLY SER ALA SEQRES 28 B 388 PHE GLY LYS ALA GLY GLU GLY TYR VAL ARG ILE SER TYR SEQRES 29 B 388 ALA THR ALA TYR GLU LYS LEU GLU GLU ALA MET GLU ARG SEQRES 30 B 388 MET GLU ARG VAL LEU LYS GLU ARG LYS LEU VAL HET PLP A 400 15 HET PLP B 400 15 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 5 HOH *200(H2 O) HELIX 1 1 ALA A 2 LEU A 9 1 8 HELIX 2 2 PRO A 41 GLY A 55 1 15 HELIX 3 3 LEU A 65 GLY A 81 1 17 HELIX 4 4 GLY A 95 ASN A 97 5 3 HELIX 5 5 GLN A 98 SER A 105 1 8 HELIX 6 6 SER A 123 GLY A 132 1 10 HELIX 7 7 TYR A 141 GLU A 145 5 5 HELIX 8 8 ASN A 149 VAL A 157 1 9 HELIX 9 9 THR A 178 ASP A 193 1 16 HELIX 10 10 SER A 214 LEU A 218 5 5 HELIX 11 11 MET A 221 GLU A 223 5 3 HELIX 12 12 MET A 237 ARG A 241 5 5 HELIX 13 13 PRO A 248 MET A 260 1 13 HELIX 14 14 VAL A 267 LYS A 279 1 13 HELIX 15 15 ASP A 280 MET A 308 1 29 HELIX 16 16 ILE A 325 GLY A 329 5 5 HELIX 17 17 THR A 331 ARG A 344 1 14 HELIX 18 18 SER A 351 GLU A 358 5 8 HELIX 19 19 ALA A 368 ARG A 386 1 19 HELIX 20 20 ALA B 2 LEU B 9 1 8 HELIX 21 21 PRO B 41 LYS B 54 1 14 HELIX 22 22 LEU B 65 GLY B 81 1 17 HELIX 23 23 ASN B 97 SER B 105 1 9 HELIX 24 24 SER B 123 GLY B 132 1 10 HELIX 25 25 TYR B 141 GLU B 145 5 5 HELIX 26 26 ASN B 149 VAL B 157 1 9 HELIX 27 27 THR B 178 HIS B 192 1 15 HELIX 28 28 SER B 214 LEU B 218 5 5 HELIX 29 29 MET B 221 GLU B 223 5 3 HELIX 30 30 MET B 237 ARG B 241 5 5 HELIX 31 31 PRO B 248 MET B 260 1 13 HELIX 32 32 VAL B 267 LYS B 279 1 13 HELIX 33 33 ASP B 280 MET B 308 1 29 HELIX 34 34 ILE B 325 GLY B 329 5 5 HELIX 35 35 THR B 331 ALA B 343 1 13 HELIX 36 36 SER B 351 GLU B 358 5 8 HELIX 37 37 ALA B 368 ARG B 386 1 19 SHEET 1 A 2 ILE A 29 SER A 30 0 SHEET 2 A 2 VAL A 345 ALA A 346 1 N ALA A 346 O ILE A 29 SHEET 1 B 7 ILE A 90 LEU A 93 0 SHEET 2 B 7 GLY A 243 ALA A 246 -1 O GLY A 243 N LEU A 93 SHEET 3 B 7 THR A 225 GLY A 230 -1 N THR A 227 O ALA A 246 SHEET 4 B 7 ILE A 195 ASP A 199 1 O VAL A 196 N ILE A 226 SHEET 5 B 7 THR A 161 ASN A 167 1 O ARG A 162 N ILE A 195 SHEET 6 B 7 GLU A 113 THR A 118 1 O GLU A 113 N ARG A 162 SHEET 7 B 7 LYS A 134 PRO A 139 1 O LYS A 134 N VAL A 114 SHEET 1 C 3 TYR A 320 ILE A 321 0 SHEET 2 C 3 VAL A 361 SER A 364 -1 N ILE A 363 O ILE A 321 SHEET 3 C 3 VAL A 348 PRO A 349 -1 O VAL A 348 N ARG A 362 SHEET 1 D 2 ILE B 29 SER B 30 0 SHEET 2 D 2 VAL B 345 ALA B 346 1 N ALA B 346 O ILE B 29 SHEET 1 E 7 ILE B 90 LEU B 93 0 SHEET 2 E 7 GLY B 243 ALA B 246 -1 O GLY B 243 N LEU B 93 SHEET 3 E 7 THR B 225 GLY B 230 -1 N THR B 227 O ALA B 246 SHEET 4 E 7 ILE B 195 ASP B 199 1 O VAL B 196 N ILE B 226 SHEET 5 E 7 THR B 161 ASN B 167 1 O ARG B 162 N ILE B 195 SHEET 6 E 7 GLU B 113 THR B 118 1 O GLU B 113 N ARG B 162 SHEET 7 E 7 LYS B 134 PRO B 139 1 O LYS B 134 N VAL B 114 SHEET 1 F 3 TYR B 320 ILE B 321 0 SHEET 2 F 3 VAL B 361 SER B 364 -1 N ILE B 363 O ILE B 321 SHEET 3 F 3 VAL B 348 PRO B 349 -1 O VAL B 348 N ARG B 362 LINK C4A PLP A 400 NZ LYS A 233 1555 1555 1.35 LINK C4A PLP B 400 NZ LYS B 233 1555 1555 1.30 CISPEP 1 THR A 118 PRO A 119 0 -3.27 CISPEP 2 SER A 168 PRO A 169 0 -4.45 CISPEP 3 ASN A 171 PRO A 172 0 15.54 CISPEP 4 THR B 118 PRO B 119 0 -7.93 CISPEP 5 SER B 168 PRO B 169 0 -10.96 CISPEP 6 ASN B 171 PRO B 172 0 19.13 SITE 1 AC1 14 GLY A 95 ALA A 96 ASN A 97 PHE A 121 SITE 2 AC1 14 ASN A 167 ASN A 171 ASP A 199 VAL A 201 SITE 3 AC1 14 TYR A 202 SER A 232 LYS A 233 ARG A 241 SITE 4 AC1 14 HOH A 417 TYR B 59 SITE 1 AC2 14 TYR A 59 HOH A 411 GLY B 95 ALA B 96 SITE 2 AC2 14 ASN B 97 PHE B 121 ASN B 167 ASN B 171 SITE 3 AC2 14 ASP B 199 TYR B 202 SER B 232 LYS B 233 SITE 4 AC2 14 ARG B 241 HOH B 439 CRYST1 64.010 124.870 128.780 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015623 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007765 0.00000