HEADER TRANSFERASE 08-DEC-99 1DL5 TITLE PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.77; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS METHYLTRANSFERASE, ISOASPARTYL RESIDUES, PROTEIN REPAIR, DEAMIDATION, KEYWDS 2 POST-TRANSLATIONAL MODIFICATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.SKINNER,J.M.PUVATHINGAL,R.L.WALTER,A.M.FRIEDMAN REVDAT 5 20-NOV-24 1DL5 1 REMARK REVDAT 4 13-MAR-24 1DL5 1 COMPND SOURCE REMARK LINK REVDAT 3 24-FEB-09 1DL5 1 VERSN REVDAT 2 01-APR-03 1DL5 1 JRNL REVDAT 1 08-DEC-00 1DL5 0 JRNL AUTH M.M.SKINNER,J.M.PUVATHINGAL,R.L.WALTER,A.M.FRIEDMAN JRNL TITL CRYSTAL STRUCTURE OF PROTEIN ISOASPARTYL METHYLTRANSFERASE: JRNL TITL 2 A CATALYST FOR PROTEIN REPAIR. JRNL REF STRUCTURE FOLD.DES. V. 8 1189 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 11080641 JRNL DOI 10.1016/S0969-2126(00)00522-0 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 66212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : SHELLS REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4051 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5028 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 337 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5096 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 463 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26500 REMARK 3 B22 (A**2) : -0.77600 REMARK 3 B33 (A**2) : 0.16800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.53600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.376 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.88 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.787 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.393 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.892 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.102 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSIONAL DYNAMICS REMARK 4 REMARK 4 1DL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MSC/YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66308 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THREE MICROLITERS OF PROTEIN AT A REMARK 280 CONCENTRATION OF 6.3MGS/ML IN 10MM TRIS PH 8.0, 200MM NACL, 5% REMARK 280 GLYCEROL, LMM DTT, 5MM BME AND 0.1MM EDTA WERE MIXED WITH THREE REMARK 280 MICROLITERS OF A RESERVOIR SOLUTION OF 28% PEG400, 100MM SODIUM REMARK 280 ACETATE PH 4.5, AND 100MM CADMIUM CHLORIDE AND EQUILIBRATED REMARK 280 AGAINST THE SAME., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.45500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT IS A DIMER (CHAIN A REMARK 300 AND B) RELATED BY THE NON-CRYSTALLOGRAPHIC SYMMETRY REMARK 300 OPERATOR. FUNCTIONAL OLIGOMERIZATION STATE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 51.06000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE B 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 ARG A 296 CD NE CZ NH1 NH2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 110.73 -164.92 REMARK 500 ASP A 192 131.45 -36.56 REMARK 500 PRO A 193 33.92 -93.84 REMARK 500 ASN A 229 -68.96 -106.63 REMARK 500 ARG A 273 149.33 -175.91 REMARK 500 ALA A 280 54.97 -144.65 REMARK 500 CYS A 315 47.18 -156.75 REMARK 500 ASP B 50 100.09 -170.66 REMARK 500 ASP B 192 135.73 -38.00 REMARK 500 ASN B 229 -72.88 -102.04 REMARK 500 ALA B 280 66.88 -150.90 REMARK 500 CYS B 315 62.21 -153.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 650 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 16 OD2 REMARK 620 2 ASP A 16 OD1 47.4 REMARK 620 3 HOH B1925 O 116.4 96.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 701 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 253 OE1 REMARK 620 2 GLU A 253 OE2 53.0 REMARK 620 3 GLU B 253 OE1 76.3 97.3 REMARK 620 4 GLU B 253 OE2 96.0 143.7 52.5 REMARK 620 5 CL B 702 CL 147.1 96.8 97.9 106.0 REMARK 620 6 CL B 703 CL 96.8 104.9 146.0 96.3 104.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 761 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 255 OD1 REMARK 620 2 ASP A 255 OD2 52.8 REMARK 620 3 GLU B 217 OE2 83.6 134.7 REMARK 620 4 HOH B1766 O 154.7 151.9 71.1 REMARK 620 5 HOH B1927 O 93.0 85.2 85.5 86.6 REMARK 620 6 HOH B1928 O 94.0 100.0 94.2 86.5 172.9 REMARK 620 7 HOH B1929 O 137.2 86.1 138.9 67.9 95.1 80.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 621 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD1 REMARK 620 2 ASP A 271 OD2 54.3 REMARK 620 3 CL A 622 CL 148.5 94.9 REMARK 620 4 CL A 623 CL 66.7 121.1 143.5 REMARK 620 5 HOH A 842 O 81.3 90.6 93.6 81.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 641 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 272 OD1 REMARK 620 2 ASP A 272 OD2 49.0 REMARK 620 3 CL A 623 CL 111.6 89.9 REMARK 620 4 HOH A 925 O 95.4 82.2 135.9 REMARK 620 5 HOH A 926 O 104.2 150.7 114.2 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 601 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CL A 603 CL REMARK 620 2 CL A 604 CL 86.5 REMARK 620 3 HIS B 312 ND1 104.3 100.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 651 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 74 OD2 REMARK 620 2 ASP B 74 OD1 52.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 721 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 930 O REMARK 620 2 CL B 722 CL 101.3 REMARK 620 3 CL B 723 CL 114.8 98.1 REMARK 620 4 HOH B1926 O 127.5 91.4 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 741 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 279 OD1 REMARK 620 2 ASP B 279 OD2 48.4 REMARK 620 3 GLU B 284 OE2 68.9 116.7 REMARK 620 4 GLU B 284 OE1 116.2 164.3 47.6 REMARK 620 5 CL B 742 CL 108.6 83.4 112.9 101.7 REMARK 620 6 CL B 743 CL 108.9 91.9 118.5 97.2 124.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 621 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 622 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 623 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 641 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 650 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 651 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 721 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 722 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 723 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 741 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 742 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 743 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 761 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 699 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 1699 DBREF 1DL5 A 1 317 UNP Q56308 PIMT_THEMA 1 317 DBREF 1DL5 B 1 317 UNP Q56308 PIMT_THEMA 1 317 SEQRES 1 A 317 MET ARG GLU LYS LEU PHE TRP ILE LEU LYS LYS TYR GLY SEQRES 2 A 317 VAL SER ASP HIS ILE ALA LYS ALA PHE LEU GLU ILE PRO SEQRES 3 A 317 ARG GLU GLU PHE LEU THR LYS SER TYR PRO LEU SER TYR SEQRES 4 A 317 VAL TYR GLU ASP ILE VAL LEU VAL SER TYR ASP ASP GLY SEQRES 5 A 317 GLU GLU TYR SER THR SER SER GLN PRO SER LEU MET ALA SEQRES 6 A 317 LEU PHE MET GLU TRP VAL GLY LEU ASP LYS GLY MET ARG SEQRES 7 A 317 VAL LEU GLU ILE GLY GLY GLY THR GLY TYR ASN ALA ALA SEQRES 8 A 317 VAL MET SER ARG VAL VAL GLY GLU LYS GLY LEU VAL VAL SEQRES 9 A 317 SER VAL GLU TYR SER ARG LYS ILE CYS GLU ILE ALA LYS SEQRES 10 A 317 ARG ASN VAL GLU ARG LEU GLY ILE GLU ASN VAL ILE PHE SEQRES 11 A 317 VAL CYS GLY ASP GLY TYR TYR GLY VAL PRO GLU PHE SER SEQRES 12 A 317 PRO TYR ASP VAL ILE PHE VAL THR VAL GLY VAL ASP GLU SEQRES 13 A 317 VAL PRO GLU THR TRP PHE THR GLN LEU LYS GLU GLY GLY SEQRES 14 A 317 ARG VAL ILE VAL PRO ILE ASN LEU LYS LEU SER ARG ARG SEQRES 15 A 317 GLN PRO ALA PHE LEU PHE LYS LYS LYS ASP PRO TYR LEU SEQRES 16 A 317 VAL GLY ASN TYR LYS LEU GLU THR ARG PHE ILE THR ALA SEQRES 17 A 317 GLY GLY ASN LEU GLY ASN LEU LEU GLU ARG ASN ARG LYS SEQRES 18 A 317 LEU LEU ARG GLU PHE PRO PHE ASN ARG GLU ILE LEU LEU SEQRES 19 A 317 VAL ARG SER HIS ILE PHE VAL GLU LEU VAL ASP LEU LEU SEQRES 20 A 317 THR ARG ARG LEU THR GLU ILE ASP GLY THR PHE TYR TYR SEQRES 21 A 317 ALA GLY PRO ASN GLY VAL VAL GLU PHE LEU ASP ASP ARG SEQRES 22 A 317 MET ARG ILE TYR GLY ASP ALA PRO GLU ILE GLU ASN LEU SEQRES 23 A 317 LEU THR GLN TRP GLU SER CYS GLY TYR ARG SER PHE GLU SEQRES 24 A 317 TYR LEU MET LEU HIS VAL GLY TYR ASN ALA PHE SER HIS SEQRES 25 A 317 ILE SER CYS SER ILE SEQRES 1 B 317 MET ARG GLU LYS LEU PHE TRP ILE LEU LYS LYS TYR GLY SEQRES 2 B 317 VAL SER ASP HIS ILE ALA LYS ALA PHE LEU GLU ILE PRO SEQRES 3 B 317 ARG GLU GLU PHE LEU THR LYS SER TYR PRO LEU SER TYR SEQRES 4 B 317 VAL TYR GLU ASP ILE VAL LEU VAL SER TYR ASP ASP GLY SEQRES 5 B 317 GLU GLU TYR SER THR SER SER GLN PRO SER LEU MET ALA SEQRES 6 B 317 LEU PHE MET GLU TRP VAL GLY LEU ASP LYS GLY MET ARG SEQRES 7 B 317 VAL LEU GLU ILE GLY GLY GLY THR GLY TYR ASN ALA ALA SEQRES 8 B 317 VAL MET SER ARG VAL VAL GLY GLU LYS GLY LEU VAL VAL SEQRES 9 B 317 SER VAL GLU TYR SER ARG LYS ILE CYS GLU ILE ALA LYS SEQRES 10 B 317 ARG ASN VAL GLU ARG LEU GLY ILE GLU ASN VAL ILE PHE SEQRES 11 B 317 VAL CYS GLY ASP GLY TYR TYR GLY VAL PRO GLU PHE SER SEQRES 12 B 317 PRO TYR ASP VAL ILE PHE VAL THR VAL GLY VAL ASP GLU SEQRES 13 B 317 VAL PRO GLU THR TRP PHE THR GLN LEU LYS GLU GLY GLY SEQRES 14 B 317 ARG VAL ILE VAL PRO ILE ASN LEU LYS LEU SER ARG ARG SEQRES 15 B 317 GLN PRO ALA PHE LEU PHE LYS LYS LYS ASP PRO TYR LEU SEQRES 16 B 317 VAL GLY ASN TYR LYS LEU GLU THR ARG PHE ILE THR ALA SEQRES 17 B 317 GLY GLY ASN LEU GLY ASN LEU LEU GLU ARG ASN ARG LYS SEQRES 18 B 317 LEU LEU ARG GLU PHE PRO PHE ASN ARG GLU ILE LEU LEU SEQRES 19 B 317 VAL ARG SER HIS ILE PHE VAL GLU LEU VAL ASP LEU LEU SEQRES 20 B 317 THR ARG ARG LEU THR GLU ILE ASP GLY THR PHE TYR TYR SEQRES 21 B 317 ALA GLY PRO ASN GLY VAL VAL GLU PHE LEU ASP ASP ARG SEQRES 22 B 317 MET ARG ILE TYR GLY ASP ALA PRO GLU ILE GLU ASN LEU SEQRES 23 B 317 LEU THR GLN TRP GLU SER CYS GLY TYR ARG SER PHE GLU SEQRES 24 B 317 TYR LEU MET LEU HIS VAL GLY TYR ASN ALA PHE SER HIS SEQRES 25 B 317 ILE SER CYS SER ILE HET CD A 601 1 HET CL A 603 1 HET CL A 604 1 HET CD A 621 1 HET CL A 622 1 HET CL A 623 1 HET CD A 641 1 HET CD A 650 1 HET CD A 651 1 HET SAH A 699 26 HET CD B 701 1 HET CL B 702 1 HET CL B 703 1 HET CD B 721 1 HET CL B 722 1 HET CL B 723 1 HET CD B 741 1 HET CL B 742 1 HET CL B 743 1 HET CD B 761 1 HET SAH B1699 26 HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 CD 9(CD 2+) FORMUL 4 CL 10(CL 1-) FORMUL 12 SAH 2(C14 H20 N6 O5 S) FORMUL 24 HOH *463(H2 O) HELIX 1 1 MET A 1 TYR A 12 1 12 HELIX 2 2 SER A 15 ILE A 25 1 11 HELIX 3 3 PRO A 26 LEU A 31 5 6 HELIX 4 4 PRO A 36 TYR A 41 1 6 HELIX 5 5 GLN A 60 VAL A 71 1 12 HELIX 6 6 GLY A 87 GLY A 98 1 12 HELIX 7 7 SER A 109 LEU A 123 1 15 HELIX 8 8 ASP A 134 GLY A 138 5 5 HELIX 9 9 VAL A 139 SER A 143 5 5 HELIX 10 10 PRO A 158 GLN A 164 1 7 HELIX 11 11 LYS A 178 ARG A 181 5 4 HELIX 12 12 GLY A 209 GLY A 213 5 5 HELIX 13 13 ASN A 214 LYS A 221 1 8 HELIX 14 14 ARG A 236 ARG A 249 1 14 HELIX 15 15 ALA A 280 CYS A 293 1 14 HELIX 16 16 SER A 297 LEU A 301 5 5 HELIX 17 17 MET B 1 TYR B 12 1 12 HELIX 18 18 SER B 15 LYS B 20 1 6 HELIX 19 19 LYS B 20 ILE B 25 1 6 HELIX 20 20 PRO B 26 LEU B 31 5 6 HELIX 21 21 PRO B 36 TYR B 41 1 6 HELIX 22 22 GLN B 60 VAL B 71 1 12 HELIX 23 23 GLY B 87 GLY B 98 1 12 HELIX 24 24 SER B 109 GLY B 124 1 16 HELIX 25 25 ASP B 134 GLY B 138 5 5 HELIX 26 26 VAL B 139 SER B 143 5 5 HELIX 27 27 PRO B 158 GLN B 164 1 7 HELIX 28 28 GLY B 209 GLY B 213 5 5 HELIX 29 29 ASN B 214 LYS B 221 1 8 HELIX 30 30 ARG B 236 ARG B 249 1 14 HELIX 31 31 ALA B 280 CYS B 293 1 14 HELIX 32 32 SER B 297 LEU B 301 5 5 SHEET 1 A 2 LEU A 46 ASP A 50 0 SHEET 2 A 2 TYR A 55 SER A 58 -1 N SER A 56 O TYR A 49 SHEET 1 B 9 VAL A 128 CYS A 132 0 SHEET 2 B 9 LEU A 102 GLU A 107 1 O VAL A 103 N ILE A 129 SHEET 3 B 9 ARG A 78 ILE A 82 1 O VAL A 79 N VAL A 104 SHEET 4 B 9 TYR A 145 VAL A 150 1 N ASP A 146 O ARG A 78 SHEET 5 B 9 LEU A 165 PRO A 174 1 N LYS A 166 O TYR A 145 SHEET 6 B 9 PRO A 184 LYS A 191 -1 N PHE A 186 O VAL A 173 SHEET 7 B 9 TYR A 194 GLU A 202 -1 O TYR A 194 N LYS A 191 SHEET 8 B 9 MET A 302 GLY A 306 -1 N LEU A 303 O GLY A 197 SHEET 9 B 9 HIS A 312 SER A 314 -1 N HIS A 312 O HIS A 304 SHEET 1 C 5 PHE A 228 LEU A 233 0 SHEET 2 C 5 ARG A 273 GLY A 278 -1 N MET A 274 O ILE A 232 SHEET 3 C 5 GLY A 265 LEU A 270 -1 O VAL A 266 N TYR A 277 SHEET 4 C 5 THR A 257 ALA A 261 -1 O PHE A 258 N PHE A 269 SHEET 5 C 5 LEU A 251 ILE A 254 -1 O THR A 252 N TYR A 259 SHEET 1 D 2 LEU B 46 ASP B 50 0 SHEET 2 D 2 TYR B 55 SER B 58 -1 N SER B 56 O TYR B 49 SHEET 1 E 9 VAL B 128 CYS B 132 0 SHEET 2 E 9 LEU B 102 GLU B 107 1 O VAL B 103 N ILE B 129 SHEET 3 E 9 ARG B 78 ILE B 82 1 O VAL B 79 N VAL B 104 SHEET 4 E 9 TYR B 145 VAL B 150 1 N ASP B 146 O ARG B 78 SHEET 5 E 9 LEU B 165 PRO B 174 1 N LYS B 166 O TYR B 145 SHEET 6 E 9 GLN B 183 LYS B 191 -1 N PHE B 186 O VAL B 173 SHEET 7 E 9 TYR B 194 THR B 203 -1 O TYR B 194 N LYS B 191 SHEET 8 E 9 MET B 302 GLY B 306 -1 N LEU B 303 O GLY B 197 SHEET 9 E 9 HIS B 312 SER B 314 -1 N HIS B 312 O HIS B 304 SHEET 1 F 5 PHE B 228 LEU B 233 0 SHEET 2 F 5 ARG B 273 GLY B 278 -1 O MET B 274 N ILE B 232 SHEET 3 F 5 GLY B 265 PHE B 269 -1 O VAL B 266 N TYR B 277 SHEET 4 F 5 THR B 257 ALA B 261 -1 O PHE B 258 N PHE B 269 SHEET 5 F 5 LEU B 251 ILE B 254 -1 N THR B 252 O TYR B 259 SSBOND 1 CYS A 113 CYS A 132 1555 1555 2.04 SSBOND 2 CYS A 293 CYS A 315 1555 1555 2.03 SSBOND 3 CYS B 113 CYS B 132 1555 1555 2.04 SSBOND 4 CYS B 293 CYS B 315 1555 1555 2.03 LINK OD2 ASP A 16 CD CD A 650 1555 1555 2.23 LINK OD1 ASP A 16 CD CD A 650 1555 1555 2.97 LINK OE1 GLU A 253 CD CD B 701 1555 1555 2.62 LINK OE2 GLU A 253 CD CD B 701 1555 1555 2.21 LINK OD1 ASP A 255 CD CD B 761 1655 1555 2.54 LINK OD2 ASP A 255 CD CD B 761 1655 1555 2.37 LINK OD1 ASP A 271 CD CD A 621 1655 1555 2.46 LINK OD2 ASP A 271 CD CD A 621 1655 1555 2.36 LINK OD1 ASP A 272 CD CD A 641 1555 1555 2.50 LINK OD2 ASP A 272 CD CD A 641 1555 1555 2.77 LINK CD CD A 601 CL CL A 603 1555 1555 2.19 LINK CD CD A 601 CL CL A 604 1555 1555 2.62 LINK CD CD A 601 ND1 HIS B 312 1555 1555 2.24 LINK CD CD A 621 CL CL A 622 1555 1555 2.42 LINK CD CD A 621 CL CL A 623 1555 1555 2.23 LINK CD CD A 621 O HOH A 842 1555 1655 2.50 LINK CL CL A 623 CD CD A 641 1455 1555 2.26 LINK CD CD A 641 O HOH A 925 1555 1555 2.66 LINK CD CD A 641 O HOH A 926 1555 1555 2.72 LINK CD CD A 650 O HOH B1925 1555 1454 2.58 LINK CD CD A 651 OD2 ASP B 74 1555 1555 2.45 LINK CD CD A 651 OD1 ASP B 74 1555 1555 2.49 LINK O HOH A 930 CD CD B 721 1555 1555 2.30 LINK OE2 GLU B 217 CD CD B 761 1555 1555 2.27 LINK OE1 GLU B 253 CD CD B 701 1455 1555 2.62 LINK OE2 GLU B 253 CD CD B 701 1455 1555 2.29 LINK OD1 ASP B 279 CD CD B 741 1555 1555 2.19 LINK OD2 ASP B 279 CD CD B 741 1555 1555 2.90 LINK OE2 GLU B 284 CD CD B 741 1555 1555 2.77 LINK OE1 GLU B 284 CD CD B 741 1555 1555 2.61 LINK CD CD B 701 CL CL B 702 1555 1555 2.49 LINK CD CD B 701 CL CL B 703 1555 1555 2.50 LINK CD CD B 721 CL CL B 722 1555 1555 2.05 LINK CD CD B 721 CL CL B 723 1555 1555 2.44 LINK CD CD B 721 O HOH B1926 1555 1555 2.48 LINK CD CD B 741 CL CL B 742 1555 1555 2.45 LINK CD CD B 741 CL CL B 743 1555 1555 2.41 LINK CD CD B 761 O HOH B1766 1555 1555 2.77 LINK CD CD B 761 O HOH B1927 1555 1555 2.40 LINK CD CD B 761 O HOH B1928 1555 1555 2.55 LINK CD CD B 761 O HOH B1929 1555 1555 2.58 CISPEP 1 SER A 143 PRO A 144 0 0.34 CISPEP 2 ASP A 192 PRO A 193 0 0.39 CISPEP 3 SER B 143 PRO B 144 0 0.15 CISPEP 4 ASP B 192 PRO B 193 0 0.27 SITE 1 AC1 3 CL A 603 CL A 604 HIS B 312 SITE 1 AC2 4 CD A 601 CL A 604 HIS B 312 ILE B 313 SITE 1 AC3 5 CD A 601 CL A 603 GLN B 289 HIS B 312 SITE 2 AC3 5 ILE B 313 SITE 1 AC4 5 ASP A 271 CL A 622 CL A 623 HOH A 842 SITE 2 AC4 5 HIS B 238 SITE 1 AC5 5 ASP A 271 CD A 621 ARG B 236 HIS B 238 SITE 2 AC5 5 ILE B 239 SITE 1 AC6 6 ASP A 271 ASP A 272 CD A 621 CD A 641 SITE 2 AC6 6 HOH A 842 HIS B 238 SITE 1 AC7 4 ASP A 272 CL A 623 HOH A 925 HOH A 926 SITE 1 AC8 2 ASP A 16 HOH B1925 SITE 1 AC9 1 ASP B 74 SITE 1 BC1 4 GLU A 253 GLU B 253 CL B 702 CL B 703 SITE 1 BC2 3 GLU A 253 ASP B 255 CD B 701 SITE 1 BC3 3 ASP A 255 GLU B 253 CD B 701 SITE 1 BC4 5 ASP A 279 HOH A 930 CL B 722 CL B 723 SITE 2 BC4 5 HOH B1926 SITE 1 BC5 3 GLU A 284 CD B 721 CL B 723 SITE 1 BC6 4 ALA A 280 GLU A 284 CD B 721 CL B 722 SITE 1 BC7 4 ASP B 279 GLU B 284 CL B 742 CL B 743 SITE 1 BC8 5 TYR A 194 ASN B 229 ARG B 230 ASP B 279 SITE 2 BC8 5 CD B 741 SITE 1 BC9 2 ASN A 285 CD B 741 SITE 1 CC1 6 ASP A 255 GLU B 217 HOH B1766 HOH B1927 SITE 2 CC1 6 HOH B1928 HOH B1929 SITE 1 CC2 23 SER A 56 THR A 57 GLU A 81 GLY A 83 SITE 2 CC2 23 GLY A 84 GLY A 85 ASN A 89 VAL A 106 SITE 3 CC2 23 GLU A 107 TYR A 108 ASP A 134 GLY A 135 SITE 4 CC2 23 THR A 151 VAL A 152 ALA A 208 GLY A 209 SITE 5 CC2 23 LEU A 212 HOH A 703 HOH A 704 HOH A 724 SITE 6 CC2 23 HOH A 725 HOH A 746 HOH A 825 SITE 1 CC3 24 SER B 56 THR B 57 GLU B 81 GLY B 83 SITE 2 CC3 24 GLY B 84 GLY B 85 ASN B 89 VAL B 106 SITE 3 CC3 24 GLU B 107 TYR B 108 ASP B 134 GLY B 135 SITE 4 CC3 24 THR B 151 VAL B 152 ALA B 208 GLY B 209 SITE 5 CC3 24 LEU B 212 HOH B1704 HOH B1708 HOH B1728 SITE 6 CC3 24 HOH B1740 HOH B1743 HOH B1761 HOH B1856 CRYST1 51.060 98.910 76.860 90.00 105.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019585 0.000000 0.005490 0.00000 SCALE2 0.000000 0.010110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013512 0.00000