HEADER OXIDOREDUCTASE 09-DEC-99 1DLI TITLE THE FIRST STRUCTURE OF UDP-GLUCOSE DEHYDROGENASE (UDPGDH) REVEALS THE TITLE 2 CATALYTIC RESIDUES NECESSARY FOR THE TWO-FOLD OXIDATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.22; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PGAC147 KEYWDS ROSSMANN FOLD, TERNARY COMPLEX, CRYSTALLOGRAPHIC DIMER, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.E.CAMPBELL,S.C.MOSIMANN,I.VAN DE RIJN,M.E.TANNER,N.C.J.STRYNADKA REVDAT 6 07-FEB-24 1DLI 1 REMARK REVDAT 5 13-JUL-11 1DLI 1 VERSN REVDAT 4 24-FEB-09 1DLI 1 VERSN REVDAT 3 01-APR-03 1DLI 1 JRNL REVDAT 2 21-JUN-00 1DLI 1 JRNL REVDAT 1 31-MAY-00 1DLI 0 JRNL AUTH R.E.CAMPBELL,S.C.MOSIMANN,I.VAN DE RIJN,M.E.TANNER, JRNL AUTH 2 N.C.STRYNADKA JRNL TITL THE FIRST STRUCTURE OF UDP-GLUCOSE DEHYDROGENASE REVEALS THE JRNL TITL 2 CATALYTIC RESIDUES NECESSARY FOR THE TWO-FOLD OXIDATION. JRNL REF BIOCHEMISTRY V. 39 7012 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10841783 JRNL DOI 10.1021/BI000181H REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2332306.020 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 20008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2026 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2246 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 234 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.53000 REMARK 3 B22 (A**2) : -9.53000 REMARK 3 B33 (A**2) : 19.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.020 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.040 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.810 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.460 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.260 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 46.51 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9057 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20008 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 24.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, GLYCEROL, TRIS-HCL, REMARK 280 PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.30050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.30050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.30050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.30050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.30050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.30050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.30050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.30050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.59200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 141 O HOH A 456 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 47 107.58 -161.47 REMARK 500 ARG A 135 21.21 -75.04 REMARK 500 SER A 146 -5.01 80.61 REMARK 500 LYS A 147 33.34 -145.15 REMARK 500 CYS A 162 145.71 -179.47 REMARK 500 ASN A 189 71.93 -104.59 REMARK 500 TYR A 249 51.56 38.27 REMARK 500 ASN A 273 -112.39 42.97 REMARK 500 THR A 278 -30.44 -132.51 REMARK 500 GLU A 304 30.82 -82.03 REMARK 500 ARG A 316 147.25 74.79 REMARK 500 LYS A 341 -166.81 -118.92 REMARK 500 ASP A 342 71.45 -107.57 REMARK 500 GLU A 356 152.10 -45.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDX A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DLJ RELATED DB: PDB REMARK 900 CYS260SER UDPGDH FROM S. PYOGENES WITH BOUND UDP-GLUCURONIC ACID REMARK 900 AND NAD(H) RESULTING FROM TURNOVER OF THE SLOWLY HYDROLYZING ESTER REMARK 900 INTERMEDIATE DBREF 1DLI A 1 402 UNP P0C0F4 UDG_STRPY 1 402 SEQRES 1 A 402 MET LYS ILE ALA VAL ALA GLY SER GLY TYR VAL GLY LEU SEQRES 2 A 402 SER LEU GLY VAL LEU LEU SER LEU GLN ASN GLU VAL THR SEQRES 3 A 402 ILE VAL ASP ILE LEU PRO SER LYS VAL ASP LYS ILE ASN SEQRES 4 A 402 ASN GLY LEU SER PRO ILE GLN ASP GLU TYR ILE GLU TYR SEQRES 5 A 402 TYR LEU LYS SER LYS GLN LEU SER ILE LYS ALA THR LEU SEQRES 6 A 402 ASP SER LYS ALA ALA TYR LYS GLU ALA GLU LEU VAL ILE SEQRES 7 A 402 ILE ALA THR PRO THR ASN TYR ASN SER ARG ILE ASN TYR SEQRES 8 A 402 PHE ASP THR GLN HIS VAL GLU THR VAL ILE LYS GLU VAL SEQRES 9 A 402 LEU SER VAL ASN SER HIS ALA THR LEU ILE ILE LYS SER SEQRES 10 A 402 THR ILE PRO ILE GLY PHE ILE THR GLU MET ARG GLN LYS SEQRES 11 A 402 PHE GLN THR ASP ARG ILE ILE PHE SER PRO GLU PHE LEU SEQRES 12 A 402 ARG GLU SER LYS ALA LEU TYR ASP ASN LEU TYR PRO SER SEQRES 13 A 402 ARG ILE ILE VAL SER CYS GLU GLU ASN ASP SER PRO LYS SEQRES 14 A 402 VAL LYS ALA ASP ALA GLU LYS PHE ALA LEU LEU LEU LYS SEQRES 15 A 402 SER ALA ALA LYS LYS ASN ASN VAL PRO VAL LEU ILE MET SEQRES 16 A 402 GLY ALA SER GLU ALA GLU ALA VAL LYS LEU PHE ALA ASN SEQRES 17 A 402 THR TYR LEU ALA LEU ARG VAL ALA TYR PHE ASN GLU LEU SEQRES 18 A 402 ASP THR TYR ALA GLU SER ARG LYS LEU ASN SER HIS MET SEQRES 19 A 402 ILE ILE GLN GLY ILE SER TYR ASP ASP ARG ILE GLY MET SEQRES 20 A 402 HIS TYR ASN ASN PRO SER PHE GLY TYR GLY GLY TYR CYS SEQRES 21 A 402 LEU PRO LYS ASP THR LYS GLN LEU LEU ALA ASN TYR ASN SEQRES 22 A 402 ASN ILE PRO GLN THR LEU ILE GLU ALA ILE VAL SER SER SEQRES 23 A 402 ASN ASN VAL ARG LYS SER TYR ILE ALA LYS GLN ILE ILE SEQRES 24 A 402 ASN VAL LEU LYS GLU GLN GLU SER PRO VAL LYS VAL VAL SEQRES 25 A 402 GLY VAL TYR ARG LEU ILE MET LYS SER ASN SER ASP ASN SEQRES 26 A 402 PHE ARG GLU SER ALA ILE LYS ASP VAL ILE ASP ILE LEU SEQRES 27 A 402 LYS SER LYS ASP ILE LYS ILE ILE ILE TYR GLU PRO MET SEQRES 28 A 402 LEU ASN LYS LEU GLU SER GLU ASP GLN SER VAL LEU VAL SEQRES 29 A 402 ASN ASP LEU GLU ASN PHE LYS LYS GLN ALA ASN ILE ILE SEQRES 30 A 402 VAL THR ASN ARG TYR ASP ASN GLU LEU GLN ASP VAL LYS SEQRES 31 A 402 ASN LYS VAL TYR SER ARG ASP ILE PHE GLY ARG ASP HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET NAD A 403 44 HET UDX A 404 34 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UDX URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE HETNAM GOL GLYCEROL HETSYN UDX UDP-ALPHA-D-XYLOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 NAD C21 H27 N7 O14 P2 FORMUL 6 UDX C14 H22 N2 O16 P2 FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 HOH *280(H2 O) HELIX 1 1 GLY A 9 SER A 20 1 12 HELIX 2 2 LEU A 31 ASN A 40 1 10 HELIX 3 3 ASP A 47 LYS A 57 1 11 HELIX 4 4 ASP A 66 ALA A 74 1 9 HELIX 5 5 THR A 94 ASN A 108 1 15 HELIX 6 6 GLY A 122 GLN A 132 1 11 HELIX 7 7 LEU A 149 TYR A 154 1 6 HELIX 8 8 SER A 167 ALA A 185 1 19 HELIX 9 9 GLY A 196 ARG A 228 1 33 HELIX 10 10 ASN A 231 TYR A 241 1 11 HELIX 11 11 TYR A 259 TYR A 272 1 14 HELIX 12 12 THR A 278 GLU A 304 1 27 HELIX 13 13 SER A 329 SER A 340 1 12 HELIX 14 14 ASP A 366 ALA A 374 1 9 HELIX 15 15 ASP A 383 LYS A 390 5 8 HELIX 16 16 VAL A 389 ASN A 391 5 3 SHEET 1 A 6 ILE A 61 THR A 64 0 SHEET 2 A 6 GLU A 24 VAL A 28 1 O VAL A 25 N LYS A 62 SHEET 3 A 6 LYS A 2 ALA A 6 1 O ILE A 3 N THR A 26 SHEET 4 A 6 LEU A 76 ILE A 79 1 O LEU A 76 N ALA A 4 SHEET 5 A 6 THR A 112 ILE A 115 1 O THR A 112 N VAL A 77 SHEET 6 A 6 ILE A 136 PHE A 138 1 N ILE A 137 O LEU A 113 SHEET 1 B 2 TYR A 85 ASN A 86 0 SHEET 2 B 2 TYR A 91 PHE A 92 -1 O TYR A 91 N ASN A 86 SHEET 1 C 2 ILE A 158 SER A 161 0 SHEET 2 C 2 VAL A 192 MET A 195 1 N LEU A 193 O ILE A 158 SHEET 1 D 5 VAL A 362 LEU A 363 0 SHEET 2 D 5 LYS A 344 TYR A 348 1 O ILE A 345 N VAL A 362 SHEET 3 D 5 VAL A 311 TYR A 315 1 N VAL A 312 O LYS A 344 SHEET 4 D 5 ILE A 376 VAL A 378 1 O ILE A 376 N GLY A 313 SHEET 5 D 5 VAL A 393 TYR A 394 1 N TYR A 394 O ILE A 377 SITE 1 AC1 5 ARG A 144 LYS A 147 GLU A 306 HOH A 638 SITE 2 AC1 5 HOH A 655 SITE 1 AC2 6 LYS A 68 VAL A 364 ASN A 365 ASP A 366 SITE 2 AC2 6 HOH A 581 HOH A 640 SITE 1 AC3 5 GLU A 328 LYS A 332 GOL A 409 HOH A 577 SITE 2 AC3 5 HOH A 599 SITE 1 AC4 28 GLY A 9 TYR A 10 VAL A 11 ASP A 29 SITE 2 AC4 28 ILE A 30 LEU A 31 LYS A 34 ALA A 80 SITE 3 AC4 28 THR A 81 PRO A 82 THR A 83 THR A 99 SITE 4 AC4 28 SER A 117 THR A 118 GLU A 141 LEU A 143 SITE 5 AC4 28 GLU A 145 TYR A 259 CYS A 260 LYS A 263 SITE 6 AC4 28 ARG A 327 UDX A 404 GOL A 409 HOH A 411 SITE 7 AC4 28 HOH A 415 HOH A 432 HOH A 496 HOH A 582 SITE 1 AC5 26 GLU A 141 PHE A 142 LEU A 143 ARG A 144 SITE 2 AC5 26 GLU A 145 LYS A 204 VAL A 215 ARG A 244 SITE 3 AC5 26 TYR A 249 ASN A 250 ASN A 251 SER A 253 SITE 4 AC5 26 TYR A 256 GLY A 257 CYS A 260 LEU A 261 SITE 5 AC5 26 MET A 319 LYS A 320 ARG A 381 ASP A 402 SITE 6 AC5 26 NAD A 403 HOH A 412 HOH A 413 HOH A 414 SITE 7 AC5 26 HOH A 453 HOH A 454 SITE 1 AC6 6 PRO A 276 GLN A 277 GLU A 281 HOH A 433 SITE 2 AC6 6 HOH A 488 HOH A 560 SITE 1 AC7 8 PRO A 82 ASN A 84 TYR A 259 ARG A 327 SITE 2 AC7 8 NAD A 403 SO4 A 407 HOH A 582 HOH A 625 SITE 1 AC8 9 PHE A 142 ARG A 144 PRO A 155 SER A 156 SITE 2 AC8 9 ARG A 244 HOH A 435 HOH A 479 HOH A 627 SITE 3 AC8 9 HOH A 638 CRYST1 106.601 106.601 81.592 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009381 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012256 0.00000