HEADER IMMUNE SYSTEM 15-DEC-99 1DN0 TITLE STRUCTURE OF THE FAB FRAGMENT FROM A HUMAN IGM COLD AGGLUTININ COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGM-KAPPA COLD AGGLUTININ (LIGHT CHAIN); COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: FAB FRAGMENT; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGM-KAPPA COLD AGGLUTININ (HEAVY CHAIN); COMPND 7 CHAIN: B, D; COMPND 8 FRAGMENT: FAB FRAGMENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS FAB, IGM, ANTIBODY, COLD AGGLUTININ, HUMAN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.CAUERHFF,B.BRADEN,J.G.CARVALHO,J.LEONI,I.POLIKARPOV,F.GOLDBAUM REVDAT 4 31-JAN-18 1DN0 1 REMARK REVDAT 3 24-FEB-09 1DN0 1 VERSN REVDAT 2 01-APR-03 1DN0 1 JRNL REVDAT 1 24-JAN-01 1DN0 0 JRNL AUTH A.CAUERHFF,B.C.BRADEN,J.G.CARVALHO,R.APARICIO,I.POLIKARPOV, JRNL AUTH 2 J.LEONI,F.A.GOLDBAUM JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE FAB FROM A HUMAN IGM COLD JRNL TITL 2 AGGLUTININ. JRNL REF J.IMMUNOL. V. 165 6422 2000 JRNL REFN ISSN 0022-1767 JRNL PMID 11086081 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 50825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 614 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.023 REMARK 3 BOND ANGLES (DEGREES) : 2.410 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17%PEG 8,000, 0.1M NA HEPES., PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 4K, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.92000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.84000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 113.84000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.92000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D2239 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 135 REMARK 465 ASN B 136 REMARK 465 SER B 137 REMARK 465 PRO B 138 REMARK 465 SER B 139 REMARK 465 ASP B 140 REMARK 465 MET B 199 REMARK 465 ALA B 200 REMARK 465 GLY B 201 REMARK 465 ILE B 226 REMARK 465 ALA B 227 REMARK 465 GLU B 228 REMARK 465 LEU B 229 REMARK 465 PRO B 230 REMARK 465 PRO B 231 REMARK 465 LYS B 232 REMARK 465 GLU D 135 REMARK 465 ASN D 136 REMARK 465 SER D 137 REMARK 465 PRO D 138 REMARK 465 SER D 139 REMARK 465 ASP D 140 REMARK 465 THR D 141 REMARK 465 SER D 142 REMARK 465 ILE D 226 REMARK 465 ALA D 227 REMARK 465 GLU D 228 REMARK 465 LEU D 229 REMARK 465 PRO D 230 REMARK 465 PRO D 231 REMARK 465 LYS D 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY C 213 N CYS C 215 2.09 REMARK 500 O LEU D 63 OG SER D 65 2.10 REMARK 500 ND2 ASN C 153 O HOH C 2599 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2132 O HOH B 2132 6555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 LEU A 47 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 66 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 66 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 VAL B 71 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG C 46 CG - CD - NE ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG C 46 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG C 46 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG C 62 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG C 62 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 52 -37.07 61.12 REMARK 500 ASP A 61 5.72 -66.11 REMARK 500 ARG A 78 88.22 -167.93 REMARK 500 ALA A 185 -73.70 -46.13 REMARK 500 LYS A 189 32.35 -76.16 REMARK 500 SER B 15 -17.20 88.52 REMARK 500 ASP B 31 -31.31 68.49 REMARK 500 SER B 103 -159.09 -141.71 REMARK 500 SER B 133 -179.75 -69.30 REMARK 500 SER B 172 59.38 -51.28 REMARK 500 PRO B 194 109.81 -50.10 REMARK 500 SER B 195 -59.76 -16.83 REMARK 500 LYS B 196 32.47 -69.72 REMARK 500 ASP B 197 76.59 -118.29 REMARK 500 PRO B 224 -136.49 -78.43 REMARK 500 SER C 31 13.73 55.01 REMARK 500 PRO C 41 118.40 -39.00 REMARK 500 ALA C 52 -43.43 70.46 REMARK 500 ARG C 78 60.14 39.42 REMARK 500 ALA C 85 -167.90 -170.29 REMARK 500 ASN C 153 -8.71 75.35 REMARK 500 ARG C 212 139.15 -34.58 REMARK 500 GLU C 214 39.99 -38.14 REMARK 500 SER D 15 -10.58 89.01 REMARK 500 ASP D 31 -34.27 73.20 REMARK 500 SER D 62 -3.34 -59.03 REMARK 500 LEU D 63 -87.71 -137.92 REMARK 500 LYS D 64 -48.37 49.29 REMARK 500 THR D 102 -65.36 -97.79 REMARK 500 SER D 103 171.33 -24.82 REMARK 500 ASN D 166 36.78 -83.94 REMARK 500 ASN D 167 9.46 39.76 REMARK 500 SER D 172 36.36 -165.87 REMARK 500 THR D 173 -169.54 -113.12 REMARK 500 ARG D 174 104.71 174.66 REMARK 500 ALA D 200 51.46 -160.06 REMARK 500 THR D 202 43.76 -92.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 33 0.09 SIDE CHAIN REMARK 500 TYR A 141 0.06 SIDE CHAIN REMARK 500 TYR C 33 0.09 SIDE CHAIN REMARK 500 TYR C 141 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1DN0 A 1 215 PIR A23746 A23746 1 215 DBREF 1DN0 B 2 232 PIR B23746 B23746 1 231 DBREF 1DN0 C 1 215 PIR A23746 A23746 1 215 DBREF 1DN0 D 2 232 PIR B23746 B23746 1 231 SEQADV 1DN0 CYS A 23 PIR A23746 GLY 23 CONFLICT SEQADV 1DN0 CYS A 89 PIR A23746 GLY 89 CONFLICT SEQADV 1DN0 CYS A 215 PIR A23746 GLY 215 CONFLICT SEQADV 1DN0 GLU B 1 PIR B23746 CONFLICT SEQADV 1DN0 ALA B 200 PIR B23746 GLN 199 CONFLICT SEQADV 1DN0 CYS C 23 PIR A23746 GLY 23 CONFLICT SEQADV 1DN0 CYS C 89 PIR A23746 GLY 89 CONFLICT SEQADV 1DN0 CYS C 215 PIR A23746 GLY 215 CONFLICT SEQADV 1DN0 GLU D 1 PIR B23746 CONFLICT SEQADV 1DN0 ALA D 200 PIR B23746 GLN 199 CONFLICT SEQRES 1 A 215 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 A 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS GLY ALA SER SEQRES 3 A 215 GLN SER VAL SER SER ASN TYR LEU ALA TRP TYR GLN GLN SEQRES 4 A 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SEQRES 5 A 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 A 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 A 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 A 215 TYR GLY SER SER PRO LEU THR PHE GLY GLY GLY THR LYS SEQRES 9 A 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 A 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 A 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 A 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 A 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 A 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 A 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 A 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 A 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 232 GLU VAL GLN LEU GLN GLN TRP GLY ALA GLY LEU LEU LYS SEQRES 2 B 232 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL TYR GLY SEQRES 3 B 232 GLY SER PHE SER ASP TYR TYR TRP SER TRP ILE ARG GLN SEQRES 4 B 232 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE ASN SEQRES 5 B 232 HIS SER GLY SER THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 B 232 ARG VAL THR ILE SER VAL ASP THR SER LYS ASN GLN PHE SEQRES 7 B 232 SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR ALA SEQRES 8 B 232 VAL TYR TYR CYS ALA ARG PRO PRO HIS ASP THR SER GLY SEQRES 9 B 232 HIS TYR TRP ASN TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 B 232 VAL SER SER GLY SER ALA SER ALA PRO THR LEU PHE PRO SEQRES 11 B 232 LEU VAL SER CYS GLU ASN SER PRO SER ASP THR SER SER SEQRES 12 B 232 VAL ALA VAL GLY CYS LEU ALA GLN ASP PHE LEU PRO ASP SEQRES 13 B 232 SER ILE THR PHE SER TRP LYS TYR LYS ASN ASN SER ASP SEQRES 14 B 232 ILE SER SER THR ARG GLY PHE PRO SER VAL LEU ARG GLY SEQRES 15 B 232 GLY LYS TYR ALA ALA THR SER GLN VAL LEU LEU PRO SER SEQRES 16 B 232 LYS ASP VAL MET ALA GLY THR ASP GLU HIS VAL VAL CYS SEQRES 17 B 232 LYS VAL GLN HIS PRO ASN GLY ASN LYS GLU LYS ASN VAL SEQRES 18 B 232 PRO LEU PRO VAL ILE ALA GLU LEU PRO PRO LYS SEQRES 1 C 215 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 C 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS GLY ALA SER SEQRES 3 C 215 GLN SER VAL SER SER ASN TYR LEU ALA TRP TYR GLN GLN SEQRES 4 C 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SEQRES 5 C 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 C 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 C 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 C 215 TYR GLY SER SER PRO LEU THR PHE GLY GLY GLY THR LYS SEQRES 9 C 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 C 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 C 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 C 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 C 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 C 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 C 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 C 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 C 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 D 232 GLU VAL GLN LEU GLN GLN TRP GLY ALA GLY LEU LEU LYS SEQRES 2 D 232 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL TYR GLY SEQRES 3 D 232 GLY SER PHE SER ASP TYR TYR TRP SER TRP ILE ARG GLN SEQRES 4 D 232 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE ASN SEQRES 5 D 232 HIS SER GLY SER THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 D 232 ARG VAL THR ILE SER VAL ASP THR SER LYS ASN GLN PHE SEQRES 7 D 232 SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR ALA SEQRES 8 D 232 VAL TYR TYR CYS ALA ARG PRO PRO HIS ASP THR SER GLY SEQRES 9 D 232 HIS TYR TRP ASN TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 D 232 VAL SER SER GLY SER ALA SER ALA PRO THR LEU PHE PRO SEQRES 11 D 232 LEU VAL SER CYS GLU ASN SER PRO SER ASP THR SER SER SEQRES 12 D 232 VAL ALA VAL GLY CYS LEU ALA GLN ASP PHE LEU PRO ASP SEQRES 13 D 232 SER ILE THR PHE SER TRP LYS TYR LYS ASN ASN SER ASP SEQRES 14 D 232 ILE SER SER THR ARG GLY PHE PRO SER VAL LEU ARG GLY SEQRES 15 D 232 GLY LYS TYR ALA ALA THR SER GLN VAL LEU LEU PRO SER SEQRES 16 D 232 LYS ASP VAL MET ALA GLY THR ASP GLU HIS VAL VAL CYS SEQRES 17 D 232 LYS VAL GLN HIS PRO ASN GLY ASN LYS GLU LYS ASN VAL SEQRES 18 D 232 PRO LEU PRO VAL ILE ALA GLU LEU PRO PRO LYS FORMUL 5 HOH *614(H2 O) HELIX 1 1 VAL A 29 ASN A 32 5 4 HELIX 2 2 GLU A 80 PHE A 84 5 5 HELIX 3 3 SER A 122 SER A 128 1 7 HELIX 4 4 LYS A 184 LYS A 189 1 6 HELIX 5 5 THR B 86 THR B 90 5 5 HELIX 6 6 VAL C 29 ASN C 32 5 4 HELIX 7 7 GLU C 80 PHE C 84 5 5 HELIX 8 8 SER C 122 SER C 128 1 7 HELIX 9 9 LYS C 184 LYS C 189 1 6 HELIX 10 10 THR D 86 THR D 90 5 5 HELIX 11 11 PRO D 194 MET D 199 1 6 SHEET 1 A 4 LEU A 4 SER A 7 0 SHEET 2 A 4 ALA A 19 ALA A 25 -1 N SER A 22 O SER A 7 SHEET 3 A 4 ASP A 71 ILE A 76 -1 N PHE A 72 O CYS A 23 SHEET 4 A 4 PHE A 63 SER A 68 -1 O SER A 64 N THR A 75 SHEET 1 B 5 SER A 54 ARG A 55 0 SHEET 2 B 5 ARG A 46 TYR A 50 -1 N TYR A 50 O SER A 54 SHEET 3 B 5 LEU A 34 GLN A 39 -1 O TRP A 36 N LEU A 48 SHEET 4 B 5 VAL A 86 GLN A 91 -1 O VAL A 86 N GLN A 39 SHEET 5 B 5 THR A 98 PHE A 99 -1 O THR A 98 N GLN A 91 SHEET 1 B1 6 SER A 54 ARG A 55 0 SHEET 2 B1 6 ARG A 46 TYR A 50 -1 N TYR A 50 O SER A 54 SHEET 3 B1 6 LEU A 34 GLN A 39 -1 O TRP A 36 N LEU A 48 SHEET 4 B1 6 VAL A 86 GLN A 91 -1 O VAL A 86 N GLN A 39 SHEET 5 B1 6 THR A 103 ILE A 107 -1 N THR A 103 O TYR A 87 SHEET 6 B1 6 THR A 10 LEU A 13 1 O LEU A 11 N GLU A 106 SHEET 1 C 4 SER A 115 PHE A 119 0 SHEET 2 C 4 THR A 130 PHE A 140 -1 O VAL A 134 N PHE A 119 SHEET 3 C 4 TYR A 174 SER A 183 -1 N TYR A 174 O PHE A 140 SHEET 4 C 4 SER A 160 VAL A 164 -1 O GLN A 161 N THR A 179 SHEET 1 D 4 ALA A 154 GLN A 156 0 SHEET 2 D 4 LYS A 146 VAL A 151 -1 O TRP A 149 N GLN A 156 SHEET 3 D 4 VAL A 192 THR A 198 -1 O ALA A 194 N LYS A 150 SHEET 4 D 4 VAL A 206 ASN A 211 -1 O VAL A 206 N VAL A 197 SHEET 1 E 4 GLN B 3 TRP B 7 0 SHEET 2 E 4 LEU B 18 TYR B 25 -1 N THR B 21 O TRP B 7 SHEET 3 E 4 GLN B 77 LEU B 82 -1 O PHE B 78 N CYS B 22 SHEET 4 E 4 VAL B 67 ASP B 72 -1 O THR B 68 N LYS B 81 SHEET 1 F 5 THR B 57 TYR B 59 0 SHEET 2 F 5 GLU B 46 ILE B 51 -1 O GLU B 50 N ASN B 58 SHEET 3 F 5 TRP B 34 GLN B 39 -1 N TRP B 34 O ILE B 51 SHEET 4 F 5 ALA B 91 ARG B 97 -1 N VAL B 92 O GLN B 39 SHEET 5 F 5 TYR B 109 TRP B 110 -1 O TYR B 109 N ARG B 97 SHEET 1 F1 6 THR B 57 TYR B 59 0 SHEET 2 F1 6 GLU B 46 ILE B 51 -1 O GLU B 50 N ASN B 58 SHEET 3 F1 6 TRP B 34 GLN B 39 -1 N TRP B 34 O ILE B 51 SHEET 4 F1 6 ALA B 91 ARG B 97 -1 N VAL B 92 O GLN B 39 SHEET 5 F1 6 THR B 114 VAL B 118 -1 O THR B 114 N TYR B 93 SHEET 6 F1 6 LEU B 11 LEU B 12 1 N LEU B 12 O THR B 117 SHEET 1 G 4 THR B 127 VAL B 132 0 SHEET 2 G 4 VAL B 144 PHE B 153 -1 O GLY B 147 N LEU B 131 SHEET 3 G 4 LYS B 184 LEU B 193 -1 N TYR B 185 O PHE B 153 SHEET 4 G 4 THR B 173 GLY B 175 -1 N ARG B 174 O GLN B 190 SHEET 1 G1 4 THR B 127 VAL B 132 0 SHEET 2 G1 4 VAL B 144 PHE B 153 -1 O GLY B 147 N LEU B 131 SHEET 3 G1 4 LYS B 184 LEU B 193 -1 N TYR B 185 O PHE B 153 SHEET 4 G1 4 VAL B 179 ARG B 181 -1 N VAL B 179 O ALA B 186 SHEET 1 H 4 ASP B 169 ILE B 170 0 SHEET 2 H 4 THR B 159 TYR B 164 -1 O TRP B 162 N ILE B 170 SHEET 3 H 4 HIS B 205 GLN B 211 -1 N VAL B 207 O LYS B 163 SHEET 4 H 4 LYS B 217 PRO B 222 -1 O LYS B 217 N VAL B 210 SHEET 1 I 4 LEU C 4 SER C 7 0 SHEET 2 I 4 ALA C 19 ALA C 25 -1 N SER C 22 O SER C 7 SHEET 3 I 4 ASP C 71 ILE C 76 -1 O PHE C 72 N CYS C 23 SHEET 4 I 4 PHE C 63 SER C 68 -1 O SER C 64 N THR C 75 SHEET 1 J 5 SER C 54 ARG C 55 0 SHEET 2 J 5 ARG C 46 TYR C 50 -1 N TYR C 50 O SER C 54 SHEET 3 J 5 LEU C 34 GLN C 39 -1 O TRP C 36 N LEU C 48 SHEET 4 J 5 VAL C 86 GLN C 91 -1 O VAL C 86 N GLN C 39 SHEET 5 J 5 THR C 98 PHE C 99 -1 O THR C 98 N GLN C 91 SHEET 1 J1 6 SER C 54 ARG C 55 0 SHEET 2 J1 6 ARG C 46 TYR C 50 -1 N TYR C 50 O SER C 54 SHEET 3 J1 6 LEU C 34 GLN C 39 -1 O TRP C 36 N LEU C 48 SHEET 4 J1 6 VAL C 86 GLN C 91 -1 O VAL C 86 N GLN C 39 SHEET 5 J1 6 THR C 103 ILE C 107 -1 O THR C 103 N TYR C 87 SHEET 6 J1 6 THR C 10 LEU C 13 1 O LEU C 11 N GLU C 106 SHEET 1 K 4 SER C 115 PHE C 119 0 SHEET 2 K 4 THR C 130 PHE C 140 -1 O VAL C 134 N PHE C 119 SHEET 3 K 4 TYR C 174 SER C 183 -1 N TYR C 174 O PHE C 140 SHEET 4 K 4 SER C 160 VAL C 164 -1 O GLN C 161 N THR C 179 SHEET 1 L 4 ALA C 154 LEU C 155 0 SHEET 2 L 4 LYS C 146 VAL C 151 -1 N VAL C 151 O ALA C 154 SHEET 3 L 4 VAL C 192 THR C 198 -1 N ALA C 194 O LYS C 150 SHEET 4 L 4 VAL C 206 ASN C 211 -1 O VAL C 206 N VAL C 197 SHEET 1 M 4 GLN D 3 TRP D 7 0 SHEET 2 M 4 LEU D 18 TYR D 25 -1 N THR D 21 O TRP D 7 SHEET 3 M 4 GLN D 77 LEU D 82 -1 O PHE D 78 N CYS D 22 SHEET 4 M 4 VAL D 67 ASP D 72 -1 N THR D 68 O LYS D 81 SHEET 1 N 5 THR D 57 TYR D 59 0 SHEET 2 N 5 GLU D 46 ILE D 51 -1 O GLU D 50 N ASN D 58 SHEET 3 N 5 TRP D 34 GLN D 39 -1 N TRP D 34 O ILE D 51 SHEET 4 N 5 ALA D 91 ARG D 97 -1 N VAL D 92 O GLN D 39 SHEET 5 N 5 TYR D 109 TRP D 110 -1 O TYR D 109 N ARG D 97 SHEET 1 N1 6 THR D 57 TYR D 59 0 SHEET 2 N1 6 GLU D 46 ILE D 51 -1 O GLU D 50 N ASN D 58 SHEET 3 N1 6 TRP D 34 GLN D 39 -1 N TRP D 34 O ILE D 51 SHEET 4 N1 6 ALA D 91 ARG D 97 -1 N VAL D 92 O GLN D 39 SHEET 5 N1 6 THR D 114 VAL D 118 -1 N THR D 114 O TYR D 93 SHEET 6 N1 6 LEU D 11 LEU D 12 1 N LEU D 12 O THR D 117 SHEET 1 O 4 THR D 127 VAL D 132 0 SHEET 2 O 4 VAL D 144 PHE D 153 -1 O GLY D 147 N LEU D 131 SHEET 3 O 4 LYS D 184 LEU D 193 -1 N TYR D 185 O PHE D 153 SHEET 4 O 4 VAL D 179 ARG D 181 -1 N VAL D 179 O ALA D 186 SHEET 1 P 4 ASP D 169 ILE D 170 0 SHEET 2 P 4 THR D 159 TYR D 164 -1 O TRP D 162 N ILE D 170 SHEET 3 P 4 HIS D 205 GLN D 211 -1 N VAL D 207 O LYS D 163 SHEET 4 P 4 LYS D 217 PRO D 222 -1 N LYS D 217 O VAL D 210 SSBOND 1 CYS A 23 CYS A 89 1555 1555 2.06 SSBOND 2 CYS A 135 CYS A 195 1555 1555 2.05 SSBOND 3 CYS A 215 CYS B 134 1555 1555 2.94 SSBOND 4 CYS B 22 CYS B 95 1555 1555 2.07 SSBOND 5 CYS B 148 CYS B 208 1555 1555 2.04 SSBOND 6 CYS C 23 CYS C 89 1555 1555 2.09 SSBOND 7 CYS C 135 CYS C 195 1555 1555 2.02 SSBOND 8 CYS C 215 CYS D 134 1555 1555 2.73 SSBOND 9 CYS D 22 CYS D 95 1555 1555 2.05 SSBOND 10 CYS D 148 CYS D 208 1555 1555 2.20 CISPEP 1 SER A 7 PRO A 8 0 -0.95 CISPEP 2 SER A 95 PRO A 96 0 0.22 CISPEP 3 TYR A 141 PRO A 142 0 0.41 CISPEP 4 LEU B 154 PRO B 155 0 -0.22 CISPEP 5 SER C 7 PRO C 8 0 -1.02 CISPEP 6 SER C 95 PRO C 96 0 -0.25 CISPEP 7 TYR C 141 PRO C 142 0 0.43 CISPEP 8 LEU D 154 PRO D 155 0 0.01 CRYST1 110.880 110.880 170.760 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009019 0.005207 0.000000 0.00000 SCALE2 0.000000 0.010414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005856 0.00000