data_1DNH
# 
_entry.id   1DNH 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1DNH         pdb_00001dnh 10.2210/pdb1dnh/pdb 
RCSB  GDL002       ?            ?                   
WWPDB D_1000172859 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1989-01-09 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2011-08-24 
5 'Structure model' 1 4 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Atomic model'              
4 4 'Structure model' 'Derived calculations'      
5 5 'Structure model' 'Data collection'           
6 5 'Structure model' 'Database references'       
7 5 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 5 'Structure model' chem_comp_atom 
2 5 'Structure model' chem_comp_bond 
3 5 'Structure model' database_2     
4 5 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 5 'Structure model' '_database_2.pdbx_DOI'                
2 5 'Structure model' '_database_2.pdbx_database_accession' 
3 5 'Structure model' '_struct_site.pdbx_auth_asym_id'      
4 5 'Structure model' '_struct_site.pdbx_auth_comp_id'      
5 5 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1DNH 
_pdbx_database_status.recvd_initial_deposition_date   1988-02-16 
_pdbx_database_status.deposit_site                    BNL 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Teng, M.-K.'     1 
'Usman, N.'       2 
'Frederick, C.A.' 3 
'Wang, A.H.-J.'   4 
# 
_citation.id                        primary 
_citation.title                     
'The molecular structure of the complex of Hoechst 33258 and the DNA dodecamer d(CGCGAATTCGCG).' 
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_volume            16 
_citation.page_first                2671 
_citation.page_last                 2690 
_citation.year                      1988 
_citation.journal_id_ASTM           NARHAD 
_citation.country                   UK 
_citation.journal_id_ISSN           0305-1048 
_citation.journal_id_CSD            0389 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   2452403 
_citation.pdbx_database_id_DOI      10.1093/nar/16.6.2671 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Teng, M.K.'      1 ? 
primary 'Usman, N.'       2 ? 
primary 'Frederick, C.A.' 3 ? 
primary 'Wang, A.H.'      4 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
;
3663.392 2   ? ? ? ? 
2 non-polymer syn "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 424.498  1   ? ? ? ? 
3 water       nat water                                                                   18.015   126 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGAATTCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" HT  
3 water                                                                   HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  DC n 
1 4  DG n 
1 5  DA n 
1 6  DA n 
1 7  DT n 
1 8  DT n 
1 9  DC n 
1 10 DG n 
1 11 DC n 
1 12 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"                                    ?               'C10 H14 N5 O6 P' 
331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"                                     ?               'C9 H14 N3 O7 P'  
307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"                                    ?               'C10 H14 N5 O7 P' 
347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                                            ?               'C10 H15 N2 O8 P' 
322.208 
HOH non-polymer   . WATER                                                                   ?               'H2 O'            
18.015  
HT  non-polymer   . "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 'HOECHST 33258' 'C25 H24 N6 O'    
424.498 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC DC A . n 
A 1 2  DG 2  2  2  DG DG A . n 
A 1 3  DC 3  3  3  DC DC A . n 
A 1 4  DG 4  4  4  DG DG A . n 
A 1 5  DA 5  5  5  DA DA A . n 
A 1 6  DA 6  6  6  DA DA A . n 
A 1 7  DT 7  7  7  DT DT A . n 
A 1 8  DT 8  8  8  DT DT A . n 
A 1 9  DC 9  9  9  DC DC A . n 
A 1 10 DG 10 10 10 DG DG A . n 
A 1 11 DC 11 11 11 DC DC A . n 
A 1 12 DG 12 12 12 DG DG A . n 
B 1 1  DC 1  13 13 DC DC B . n 
B 1 2  DG 2  14 14 DG DG B . n 
B 1 3  DC 3  15 15 DC DC B . n 
B 1 4  DG 4  16 16 DG DG B . n 
B 1 5  DA 5  17 17 DA DA B . n 
B 1 6  DA 6  18 18 DA DA B . n 
B 1 7  DT 7  19 19 DT DT B . n 
B 1 8  DT 8  20 20 DT DT B . n 
B 1 9  DC 9  21 21 DC DC B . n 
B 1 10 DG 10 22 22 DG DG B . n 
B 1 11 DC 11 23 23 DC DC B . n 
B 1 12 DG 12 24 24 DG DG B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 HT  1  25  25  HT  HT  B . 
D 3 HOH 1  26  26  HOH HOH A . 
D 3 HOH 2  29  29  HOH HOH A . 
D 3 HOH 3  31  31  HOH HOH A . 
D 3 HOH 4  32  32  HOH HOH A . 
D 3 HOH 5  36  36  HOH HOH A . 
D 3 HOH 6  37  37  HOH HOH A . 
D 3 HOH 7  39  39  HOH HOH A . 
D 3 HOH 8  40  40  HOH HOH A . 
D 3 HOH 9  41  41  HOH HOH A . 
D 3 HOH 10 43  43  HOH HOH A . 
D 3 HOH 11 45  45  HOH HOH A . 
D 3 HOH 12 47  47  HOH HOH A . 
D 3 HOH 13 49  49  HOH HOH A . 
D 3 HOH 14 50  50  HOH HOH A . 
D 3 HOH 15 51  51  HOH HOH A . 
D 3 HOH 16 54  54  HOH HOH A . 
D 3 HOH 17 56  56  HOH HOH A . 
D 3 HOH 18 58  58  HOH HOH A . 
D 3 HOH 19 61  61  HOH HOH A . 
D 3 HOH 20 65  65  HOH HOH A . 
D 3 HOH 21 67  67  HOH HOH A . 
D 3 HOH 22 68  68  HOH HOH A . 
D 3 HOH 23 72  72  HOH HOH A . 
D 3 HOH 24 76  76  HOH HOH A . 
D 3 HOH 25 77  77  HOH HOH A . 
D 3 HOH 26 80  80  HOH HOH A . 
D 3 HOH 27 81  81  HOH HOH A . 
D 3 HOH 28 83  83  HOH HOH A . 
D 3 HOH 29 84  84  HOH HOH A . 
D 3 HOH 30 85  85  HOH HOH A . 
D 3 HOH 31 89  89  HOH HOH A . 
D 3 HOH 32 90  90  HOH HOH A . 
D 3 HOH 33 91  91  HOH HOH A . 
D 3 HOH 34 93  93  HOH HOH A . 
D 3 HOH 35 94  94  HOH HOH A . 
D 3 HOH 36 100 100 HOH HOH A . 
D 3 HOH 37 106 106 HOH HOH A . 
D 3 HOH 38 111 111 HOH HOH A . 
D 3 HOH 39 115 115 HOH HOH A . 
D 3 HOH 40 116 116 HOH HOH A . 
D 3 HOH 41 119 119 HOH HOH A . 
D 3 HOH 42 120 120 HOH HOH A . 
D 3 HOH 43 122 122 HOH HOH A . 
D 3 HOH 44 123 123 HOH HOH A . 
D 3 HOH 45 126 126 HOH HOH A . 
D 3 HOH 46 127 127 HOH HOH A . 
D 3 HOH 47 128 128 HOH HOH A . 
D 3 HOH 48 132 132 HOH HOH A . 
D 3 HOH 49 133 133 HOH HOH A . 
D 3 HOH 50 134 134 HOH HOH A . 
D 3 HOH 51 136 136 HOH HOH A . 
D 3 HOH 52 139 139 HOH HOH A . 
D 3 HOH 53 140 140 HOH HOH A . 
D 3 HOH 54 142 142 HOH HOH A . 
D 3 HOH 55 143 143 HOH HOH A . 
D 3 HOH 56 144 144 HOH HOH A . 
D 3 HOH 57 147 147 HOH HOH A . 
D 3 HOH 58 148 148 HOH HOH A . 
D 3 HOH 59 150 150 HOH HOH A . 
D 3 HOH 60 151 151 HOH HOH A . 
E 3 HOH 1  27  27  HOH HOH B . 
E 3 HOH 2  28  28  HOH HOH B . 
E 3 HOH 3  30  30  HOH HOH B . 
E 3 HOH 4  33  33  HOH HOH B . 
E 3 HOH 5  34  34  HOH HOH B . 
E 3 HOH 6  35  35  HOH HOH B . 
E 3 HOH 7  38  38  HOH HOH B . 
E 3 HOH 8  42  42  HOH HOH B . 
E 3 HOH 9  44  44  HOH HOH B . 
E 3 HOH 10 46  46  HOH HOH B . 
E 3 HOH 11 48  48  HOH HOH B . 
E 3 HOH 12 52  52  HOH HOH B . 
E 3 HOH 13 53  53  HOH HOH B . 
E 3 HOH 14 55  55  HOH HOH B . 
E 3 HOH 15 57  57  HOH HOH B . 
E 3 HOH 16 59  59  HOH HOH B . 
E 3 HOH 17 60  60  HOH HOH B . 
E 3 HOH 18 62  62  HOH HOH B . 
E 3 HOH 19 63  63  HOH HOH B . 
E 3 HOH 20 64  64  HOH HOH B . 
E 3 HOH 21 66  66  HOH HOH B . 
E 3 HOH 22 69  69  HOH HOH B . 
E 3 HOH 23 70  70  HOH HOH B . 
E 3 HOH 24 71  71  HOH HOH B . 
E 3 HOH 25 73  73  HOH HOH B . 
E 3 HOH 26 74  74  HOH HOH B . 
E 3 HOH 27 75  75  HOH HOH B . 
E 3 HOH 28 78  78  HOH HOH B . 
E 3 HOH 29 79  79  HOH HOH B . 
E 3 HOH 30 82  82  HOH HOH B . 
E 3 HOH 31 86  86  HOH HOH B . 
E 3 HOH 32 87  87  HOH HOH B . 
E 3 HOH 33 88  88  HOH HOH B . 
E 3 HOH 34 92  92  HOH HOH B . 
E 3 HOH 35 95  95  HOH HOH B . 
E 3 HOH 36 96  96  HOH HOH B . 
E 3 HOH 37 97  97  HOH HOH B . 
E 3 HOH 38 98  98  HOH HOH B . 
E 3 HOH 39 99  99  HOH HOH B . 
E 3 HOH 40 101 101 HOH HOH B . 
E 3 HOH 41 102 102 HOH HOH B . 
E 3 HOH 42 103 103 HOH HOH B . 
E 3 HOH 43 104 104 HOH HOH B . 
E 3 HOH 44 105 105 HOH HOH B . 
E 3 HOH 45 107 107 HOH HOH B . 
E 3 HOH 46 108 108 HOH HOH B . 
E 3 HOH 47 109 109 HOH HOH B . 
E 3 HOH 48 110 110 HOH HOH B . 
E 3 HOH 49 112 112 HOH HOH B . 
E 3 HOH 50 113 113 HOH HOH B . 
E 3 HOH 51 114 114 HOH HOH B . 
E 3 HOH 52 117 117 HOH HOH B . 
E 3 HOH 53 118 118 HOH HOH B . 
E 3 HOH 54 121 121 HOH HOH B . 
E 3 HOH 55 124 124 HOH HOH B . 
E 3 HOH 56 125 125 HOH HOH B . 
E 3 HOH 57 129 129 HOH HOH B . 
E 3 HOH 58 130 130 HOH HOH B . 
E 3 HOH 59 131 131 HOH HOH B . 
E 3 HOH 60 135 135 HOH HOH B . 
E 3 HOH 61 137 137 HOH HOH B . 
E 3 HOH 62 138 138 HOH HOH B . 
E 3 HOH 63 141 141 HOH HOH B . 
E 3 HOH 64 145 145 HOH HOH B . 
E 3 HOH 65 146 146 HOH HOH B . 
E 3 HOH 66 149 149 HOH HOH B . 
# 
_software.name             NUCLSQ 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
# 
_cell.entry_id           1DNH 
_cell.length_a           25.230 
_cell.length_b           40.580 
_cell.length_c           66.080 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         1DNH 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          1DNH 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   46.72 
_exptl_crystal.density_Matthews      2.31 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION' 
_exptl_crystal_grow.temp            ? 
_exptl_crystal_grow.temp_details    'ROOM TEMPERATURE' 
_exptl_crystal_grow.pH              ? 
_exptl_crystal_grow.pdbx_details    'VAPOR DIFFUSION' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER           ? ? ? 
1 2 1 MPD             ? ? ? 
1 3 1 'NA CACODYLATE' ? ? ? 
1 4 1 SPERMINE        ? ? ? 
1 5 2 WATER           ? ? ? 
1 6 2 MPD             ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           288.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               DIFFRACTOMETER 
_diffrn_detector.type                   'NICOLET P3' 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      ? 
_diffrn_source.type                        ? 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     1DNH 
_reflns.observed_criterion_sigma_I   0.000 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             20.000 
_reflns.d_resolution_high            2.250 
_reflns.number_obs                   3634 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
# 
_refine.entry_id                                 1DNH 
_refine.ls_number_reflns_obs                     2000 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             20.000 
_refine.ls_d_res_high                            2.250 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1570000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   486 
_refine_hist.pdbx_number_atoms_ligand         32 
_refine_hist.number_atoms_solvent             126 
_refine_hist.number_atoms_total               644 
_refine_hist.d_res_high                       2.250 
_refine_hist.d_res_low                        20.000 
# 
_database_PDB_matrix.entry_id          1DNH 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1DNH 
_struct.title                     'THE MOLECULAR STRUCTURE OF THE COMPLEX OF HOECHST 33258 AND THE DNA DODECAMER D(CGCGAATTCGCG)' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1DNH 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 3 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1DNH 
_struct_ref.pdbx_db_accession          1DNH 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1DNH A 1 ? 12 ? 1DNH 1  ? 12 ? 1  12 
2 1 1DNH B 1 ? 12 ? 1DNH 13 ? 24 ? 13 24 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DG 2  N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DG 2  N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DG 2  O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DC 3  N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DC 3  N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DC 3  O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DG 4  N1 ? ? ? 1_555 B DC 9  N3 ? ? A DG 4  B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DG 4  N2 ? ? ? 1_555 B DC 9  O2 ? ? A DG 4  B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DG 4  O6 ? ? ? 1_555 B DC 9  N4 ? ? A DG 4  B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DA 5  N1 ? ? ? 1_555 B DT 8  N3 ? ? A DA 5  B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DA 5  N6 ? ? ? 1_555 B DT 8  O4 ? ? A DA 5  B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DA 6  N1 ? ? ? 1_555 B DT 7  N3 ? ? A DA 6  B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DA 6  N6 ? ? ? 1_555 B DT 7  O4 ? ? A DA 6  B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DT 7  N3 ? ? ? 1_555 B DA 6  N1 ? ? A DT 7  B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DT 7  O4 ? ? ? 1_555 B DA 6  N6 ? ? A DT 7  B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A DT 8  N3 ? ? ? 1_555 B DA 5  N1 ? ? A DT 8  B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A DT 8  O4 ? ? ? 1_555 B DA 5  N6 ? ? A DT 8  B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A DC 9  N3 ? ? ? 1_555 B DG 4  N1 ? ? A DC 9  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? A DC 9  N4 ? ? ? 1_555 B DG 4  O6 ? ? A DC 9  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog23 hydrog ? ? A DC 9  O2 ? ? ? 1_555 B DG 4  N2 ? ? A DC 9  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3  N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3  O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3  N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2  N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2  O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2  N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1  N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1  O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1  N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software B HT 25 ? 12 'BINDING SITE FOR RESIDUE HT B 25' 
1   ?        ? ?  ?  ? ?  ?                                  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 12 DA  A 5 ? DA  A 5  . ? 1_555 ? 
2  AC1 12 DA  A 6 ? DA  A 6  . ? 1_555 ? 
3  AC1 12 DT  A 7 ? DT  A 7  . ? 1_555 ? 
4  AC1 12 DT  A 8 ? DT  A 8  . ? 1_555 ? 
5  AC1 12 DC  A 9 ? DC  A 9  . ? 1_555 ? 
6  AC1 12 DA  B 5 ? DA  B 17 . ? 1_555 ? 
7  AC1 12 DA  B 6 ? DA  B 18 . ? 1_555 ? 
8  AC1 12 DT  B 7 ? DT  B 19 . ? 1_555 ? 
9  AC1 12 DT  B 8 ? DT  B 20 . ? 1_555 ? 
10 AC1 12 DC  B 9 ? DC  B 21 . ? 1_555 ? 
11 AC1 12 HOH E . ? HOH B 73 . ? 1_555 ? 
12 AC1 12 HOH E . ? HOH B 88 . ? 1_555 ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 "O3'" A DC 1  ? ? P     A DG 2  ? ? 1.531 1.607 -0.076 0.012 Y 
2  1 "C3'" A DG 2  ? ? "C2'" A DG 2  ? ? 1.464 1.516 -0.052 0.008 N 
3  1 "O5'" A DG 4  ? ? "C5'" A DG 4  ? ? 1.551 1.440 0.111  0.016 N 
4  1 P     A DC 9  ? ? "O5'" A DC 9  ? ? 1.657 1.593 0.064  0.010 N 
5  1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 1.379 1.446 -0.067 0.010 N 
6  1 N7    A DG 10 ? ? C8    A DG 10 ? ? 1.349 1.305 0.044  0.006 N 
7  1 N3    A DC 11 ? ? C4    A DC 11 ? ? 1.386 1.335 0.051  0.007 N 
8  1 "C2'" A DG 12 ? ? "C1'" A DG 12 ? ? 1.582 1.519 0.063  0.010 N 
9  1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? 1.385 1.446 -0.061 0.010 N 
10 1 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.555 1.512 0.043  0.007 N 
11 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 1.436 1.509 -0.073 0.011 N 
12 1 P     B DT 19 ? ? "O5'" B DT 19 ? ? 1.688 1.593 0.095  0.010 N 
13 1 N3    B DT 19 ? ? C4    B DT 19 ? ? 1.329 1.382 -0.053 0.008 N 
14 1 C4    B DT 19 ? ? O4    B DT 19 ? ? 1.282 1.228 0.054  0.009 N 
15 1 "O3'" B DC 21 ? ? "C3'" B DC 21 ? ? 1.346 1.419 -0.073 0.006 N 
16 1 "O3'" B DC 21 ? ? P     B DG 22 ? ? 1.512 1.607 -0.095 0.012 Y 
17 1 P     B DG 22 ? ? "O5'" B DG 22 ? ? 1.661 1.593 0.068  0.010 N 
18 1 C6    B DG 22 ? ? N1    B DG 22 ? ? 1.343 1.391 -0.048 0.007 N 
19 1 P     B DG 24 ? ? "O5'" B DG 24 ? ? 1.671 1.593 0.078  0.010 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1   1 "O5'" A DC 1  ? ? "C5'" A DC 1  ? ? "C4'" A DC 1  ? ? 102.13 109.40 -7.27  0.80 N 
2   1 "O4'" A DC 1  ? ? "C4'" A DC 1  ? ? "C3'" A DC 1  ? ? 99.35  104.50 -5.15  0.40 N 
3   1 "C5'" A DG 2  ? ? "C4'" A DG 2  ? ? "O4'" A DG 2  ? ? 118.85 109.80 9.05   1.10 N 
4   1 "O4'" A DG 2  ? ? "C1'" A DG 2  ? ? N9    A DG 2  ? ? 115.65 108.30 7.35   0.30 N 
5   1 "O4'" A DC 3  ? ? "C4'" A DC 3  ? ? "C3'" A DC 3  ? ? 101.28 104.50 -3.22  0.40 N 
6   1 "C3'" A DC 3  ? ? "C2'" A DC 3  ? ? "C1'" A DC 3  ? ? 96.82  102.40 -5.58  0.80 N 
7   1 "O4'" A DC 3  ? ? "C1'" A DC 3  ? ? N1    A DC 3  ? ? 116.41 108.30 8.11   0.30 N 
8   1 C2    A DC 3  ? ? N3    A DC 3  ? ? C4    A DC 3  ? ? 123.29 119.90 3.39   0.50 N 
9   1 C5    A DC 3  ? ? C6    A DC 3  ? ? N1    A DC 3  ? ? 124.15 121.00 3.15   0.50 N 
10  1 N3    A DC 3  ? ? C4    A DC 3  ? ? N4    A DC 3  ? ? 123.25 118.00 5.25   0.70 N 
11  1 "O5'" A DG 4  ? ? P     A DG 4  ? ? OP2   A DG 4  ? ? 121.53 110.70 10.83  1.20 N 
12  1 "O5'" A DG 4  ? ? "C5'" A DG 4  ? ? "C4'" A DG 4  ? ? 103.03 109.40 -6.37  0.80 N 
13  1 P     A DG 4  ? ? "O5'" A DG 4  ? ? "C5'" A DG 4  ? ? 109.94 120.90 -10.96 1.60 N 
14  1 "O4'" A DG 4  ? ? "C1'" A DG 4  ? ? N9    A DG 4  ? ? 119.31 108.30 11.01  0.30 N 
15  1 "O5'" A DA 5  ? ? P     A DA 5  ? ? OP2   A DA 5  ? ? 121.73 110.70 11.03  1.20 N 
16  1 "O5'" A DA 5  ? ? "C5'" A DA 5  ? ? "C4'" A DA 5  ? ? 100.71 109.40 -8.69  0.80 N 
17  1 P     A DA 5  ? ? "O5'" A DA 5  ? ? "C5'" A DA 5  ? ? 108.81 120.90 -12.09 1.60 N 
18  1 "O4'" A DA 5  ? ? "C1'" A DA 5  ? ? "C2'" A DA 5  ? ? 100.59 105.90 -5.31  0.80 N 
19  1 N1    A DA 5  ? ? C2    A DA 5  ? ? N3    A DA 5  ? ? 125.35 129.30 -3.95  0.50 N 
20  1 OP1   A DA 6  ? ? P     A DA 6  ? ? OP2   A DA 6  ? ? 110.30 119.60 -9.30  1.50 N 
21  1 "O5'" A DA 6  ? ? P     A DA 6  ? ? OP2   A DA 6  ? ? 119.45 110.70 8.75   1.20 N 
22  1 "O4'" A DA 6  ? ? "C4'" A DA 6  ? ? "C3'" A DA 6  ? ? 97.79  104.50 -6.71  0.40 N 
23  1 "O4'" A DA 6  ? ? "C1'" A DA 6  ? ? N9    A DA 6  ? ? 117.52 108.30 9.22   0.30 N 
24  1 C6    A DA 6  ? ? N1    A DA 6  ? ? C2    A DA 6  ? ? 122.45 118.60 3.85   0.60 N 
25  1 N1    A DA 6  ? ? C2    A DA 6  ? ? N3    A DA 6  ? ? 125.68 129.30 -3.62  0.50 N 
26  1 "O5'" A DT 7  ? ? "C5'" A DT 7  ? ? "C4'" A DT 7  ? ? 104.27 109.40 -5.13  0.80 N 
27  1 N1    A DT 7  ? ? C2    A DT 7  ? ? N3    A DT 7  ? ? 118.89 114.60 4.29   0.60 N 
28  1 C2    A DT 7  ? ? N3    A DT 7  ? ? C4    A DT 7  ? ? 120.58 127.20 -6.62  0.60 N 
29  1 N3    A DT 7  ? ? C4    A DT 7  ? ? C5    A DT 7  ? ? 120.17 115.20 4.97   0.60 N 
30  1 N3    A DT 7  ? ? C4    A DT 7  ? ? O4    A DT 7  ? ? 116.13 119.90 -3.77  0.60 N 
31  1 C6    A DT 7  ? ? N1    A DT 7  ? ? "C1'" A DT 7  ? ? 129.53 120.40 9.13   1.50 N 
32  1 "C3'" A DT 7  ? ? "O3'" A DT 7  ? ? P     A DT 8  ? ? 130.19 119.70 10.49  1.20 Y 
33  1 "O5'" A DT 8  ? ? "C5'" A DT 8  ? ? "C4'" A DT 8  ? ? 101.94 109.40 -7.46  0.80 N 
34  1 "C4'" A DT 8  ? ? "C3'" A DT 8  ? ? "C2'" A DT 8  ? ? 97.97  102.20 -4.23  0.70 N 
35  1 "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 110.87 108.30 2.57   0.30 N 
36  1 "O5'" A DC 9  ? ? P     A DC 9  ? ? OP2   A DC 9  ? ? 120.55 110.70 9.85   1.20 N 
37  1 "O5'" A DC 9  ? ? "C5'" A DC 9  ? ? "C4'" A DC 9  ? ? 103.39 109.40 -6.01  0.80 N 
38  1 P     A DC 9  ? ? "O5'" A DC 9  ? ? "C5'" A DC 9  ? ? 103.46 120.90 -17.44 1.60 N 
39  1 "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 101.88 108.00 -6.12  0.70 N 
40  1 P     A DG 10 ? ? "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? 110.83 120.90 -10.07 1.60 N 
41  1 N3    A DG 10 ? ? C2    A DG 10 ? ? N2    A DG 10 ? ? 114.66 119.90 -5.24  0.70 N 
42  1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P     A DC 11 ? ? 135.59 119.70 15.89  1.20 Y 
43  1 "O5'" A DC 11 ? ? P     A DC 11 ? ? OP2   A DC 11 ? ? 118.57 110.70 7.87   1.20 N 
44  1 "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 102.42 109.40 -6.98  0.80 N 
45  1 P     A DC 11 ? ? "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? 106.37 120.90 -14.53 1.60 N 
46  1 "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 97.09  102.40 -5.31  0.80 N 
47  1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1    A DC 11 ? ? 112.18 108.30 3.88   0.30 N 
48  1 N1    A DC 11 ? ? C2    A DC 11 ? ? O2    A DC 11 ? ? 114.96 118.90 -3.94  0.60 N 
49  1 N3    A DC 11 ? ? C2    A DC 11 ? ? O2    A DC 11 ? ? 128.91 121.90 7.01   0.70 N 
50  1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 100.87 109.40 -8.53  0.80 N 
51  1 "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? "C1'" A DG 12 ? ? 96.52  102.40 -5.88  0.80 N 
52  1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9    A DG 12 ? ? 117.52 108.30 9.22   0.30 N 
53  1 N1    A DG 12 ? ? C6    A DG 12 ? ? O6    A DG 12 ? ? 126.31 119.90 6.41   0.60 N 
54  1 C5    A DG 12 ? ? C6    A DG 12 ? ? O6    A DG 12 ? ? 119.98 128.60 -8.62  0.60 N 
55  1 C2    B DC 13 ? ? N3    B DC 13 ? ? C4    B DC 13 ? ? 123.05 119.90 3.15   0.50 N 
56  1 N3    B DC 13 ? ? C2    B DC 13 ? ? O2    B DC 13 ? ? 128.73 121.90 6.83   0.70 N 
57  1 N3    B DC 13 ? ? C4    B DC 13 ? ? N4    B DC 13 ? ? 125.17 118.00 7.17   0.70 N 
58  1 C5    B DC 13 ? ? C4    B DC 13 ? ? N4    B DC 13 ? ? 114.71 120.20 -5.49  0.70 N 
59  1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P     B DG 14 ? ? 130.86 119.70 11.16  1.20 Y 
60  1 N1    B DG 14 ? ? C2    B DG 14 ? ? N3    B DG 14 ? ? 128.41 123.90 4.51   0.60 N 
61  1 C2    B DG 14 ? ? N3    B DG 14 ? ? C4    B DG 14 ? ? 108.79 111.90 -3.11  0.50 N 
62  1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 103.71 109.40 -5.69  0.80 N 
63  1 C5    B DG 16 ? ? C6    B DG 16 ? ? O6    B DG 16 ? ? 124.87 128.60 -3.73  0.60 N 
64  1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P     B DA 17 ? ? 136.57 119.70 16.87  1.20 Y 
65  1 "O5'" B DA 17 ? ? P     B DA 17 ? ? OP1   B DA 17 ? ? 98.75  105.70 -6.95  0.90 N 
66  1 "O5'" B DA 17 ? ? P     B DA 17 ? ? OP2   B DA 17 ? ? 122.09 110.70 11.39  1.20 N 
67  1 P     B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 105.38 120.90 -15.52 1.60 N 
68  1 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 101.81 104.50 -2.69  0.40 N 
69  1 C6    B DA 17 ? ? N1    B DA 17 ? ? C2    B DA 17 ? ? 123.42 118.60 4.82   0.60 N 
70  1 C2    B DA 17 ? ? N3    B DA 17 ? ? C4    B DA 17 ? ? 107.30 110.60 -3.30  0.50 N 
71  1 C5    B DA 17 ? ? C6    B DA 17 ? ? N1    B DA 17 ? ? 113.65 117.70 -4.05  0.50 N 
72  1 N1    B DA 17 ? ? C6    B DA 17 ? ? N6    B DA 17 ? ? 122.77 118.60 4.17   0.60 N 
73  1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P     B DA 18 ? ? 136.28 119.70 16.58  1.20 Y 
74  1 "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? "C1'" B DA 18 ? ? 94.90  102.40 -7.50  0.80 N 
75  1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9    B DA 18 ? ? 111.95 108.30 3.65   0.30 N 
76  1 C6    B DA 18 ? ? N1    B DA 18 ? ? C2    B DA 18 ? ? 122.49 118.60 3.89   0.60 N 
77  1 N1    B DA 18 ? ? C2    B DA 18 ? ? N3    B DA 18 ? ? 124.49 129.30 -4.81  0.50 N 
78  1 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 96.97  102.20 -5.23  0.70 N 
79  1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1    B DT 19 ? ? 117.80 108.30 9.50   0.30 N 
80  1 C2    B DT 19 ? ? N3    B DT 19 ? ? C4    B DT 19 ? ? 123.44 127.20 -3.76  0.60 N 
81  1 N3    B DT 19 ? ? C4    B DT 19 ? ? C5    B DT 19 ? ? 119.40 115.20 4.20   0.60 N 
82  1 N3    B DT 19 ? ? C4    B DT 19 ? ? O4    B DT 19 ? ? 113.47 119.90 -6.43  0.60 N 
83  1 "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 98.71  104.50 -5.79  0.40 N 
84  1 "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 123.32 115.70 7.62   1.20 N 
85  1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1    B DT 20 ? ? 111.39 108.30 3.09   0.30 N 
86  1 C2    B DT 20 ? ? N3    B DT 20 ? ? C4    B DT 20 ? ? 123.55 127.20 -3.65  0.60 N 
87  1 OP1   B DC 21 ? ? P     B DC 21 ? ? OP2   B DC 21 ? ? 108.57 119.60 -11.03 1.50 N 
88  1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 114.22 108.30 5.92   0.30 N 
89  1 C2    B DC 21 ? ? N3    B DC 21 ? ? C4    B DC 21 ? ? 123.44 119.90 3.54   0.50 N 
90  1 C5    B DC 21 ? ? C6    B DC 21 ? ? N1    B DC 21 ? ? 124.15 121.00 3.15   0.50 N 
91  1 N3    B DC 21 ? ? C4    B DC 21 ? ? N4    B DC 21 ? ? 123.40 118.00 5.40   0.70 N 
92  1 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P     B DG 22 ? ? 148.04 119.70 28.34  1.20 Y 
93  1 "O3'" B DC 21 ? ? P     B DG 22 ? ? OP1   B DG 22 ? ? 124.53 110.50 14.03  1.10 Y 
94  1 OP1   B DG 22 ? ? P     B DG 22 ? ? OP2   B DG 22 ? ? 108.15 119.60 -11.45 1.50 N 
95  1 "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? 100.50 109.40 -8.90  0.80 N 
96  1 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 96.78  102.20 -5.42  0.70 N 
97  1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 94.19  102.40 -8.21  0.80 N 
98  1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9    B DG 22 ? ? 115.39 108.30 7.09   0.30 N 
99  1 C2    B DG 22 ? ? N3    B DG 22 ? ? C4    B DG 22 ? ? 108.54 111.90 -3.36  0.50 N 
100 1 "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? P     B DC 23 ? ? 130.57 119.70 10.87  1.20 Y 
101 1 OP1   B DC 23 ? ? P     B DC 23 ? ? OP2   B DC 23 ? ? 109.24 119.60 -10.36 1.50 N 
102 1 "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 100.60 109.40 -8.80  0.80 N 
103 1 P     B DC 23 ? ? "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? 110.76 120.90 -10.14 1.60 N 
104 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1    B DC 23 ? ? 121.15 108.30 12.85  0.30 N 
105 1 C6    B DG 24 ? ? N1    B DG 24 ? ? C2    B DG 24 ? ? 120.89 125.10 -4.21  0.60 N 
106 1 N1    B DG 24 ? ? C6    B DG 24 ? ? O6    B DG 24 ? ? 115.26 119.90 -4.64  0.60 N 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      'MINOR GROOVE BINDER' 
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' fix 'X-RAY DIFFRACTION' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O N N 1   
DA  P      P N N 2   
DA  OP1    O N N 3   
DA  OP2    O N N 4   
DA  "O5'"  O N N 5   
DA  "C5'"  C N N 6   
DA  "C4'"  C N R 7   
DA  "O4'"  O N N 8   
DA  "C3'"  C N S 9   
DA  "O3'"  O N N 10  
DA  "C2'"  C N N 11  
DA  "C1'"  C N R 12  
DA  N9     N Y N 13  
DA  C8     C Y N 14  
DA  N7     N Y N 15  
DA  C5     C Y N 16  
DA  C6     C Y N 17  
DA  N6     N N N 18  
DA  N1     N Y N 19  
DA  C2     C Y N 20  
DA  N3     N Y N 21  
DA  C4     C Y N 22  
DA  HOP3   H N N 23  
DA  HOP2   H N N 24  
DA  "H5'"  H N N 25  
DA  "H5''" H N N 26  
DA  "H4'"  H N N 27  
DA  "H3'"  H N N 28  
DA  "HO3'" H N N 29  
DA  "H2'"  H N N 30  
DA  "H2''" H N N 31  
DA  "H1'"  H N N 32  
DA  H8     H N N 33  
DA  H61    H N N 34  
DA  H62    H N N 35  
DA  H2     H N N 36  
DC  OP3    O N N 37  
DC  P      P N N 38  
DC  OP1    O N N 39  
DC  OP2    O N N 40  
DC  "O5'"  O N N 41  
DC  "C5'"  C N N 42  
DC  "C4'"  C N R 43  
DC  "O4'"  O N N 44  
DC  "C3'"  C N S 45  
DC  "O3'"  O N N 46  
DC  "C2'"  C N N 47  
DC  "C1'"  C N R 48  
DC  N1     N N N 49  
DC  C2     C N N 50  
DC  O2     O N N 51  
DC  N3     N N N 52  
DC  C4     C N N 53  
DC  N4     N N N 54  
DC  C5     C N N 55  
DC  C6     C N N 56  
DC  HOP3   H N N 57  
DC  HOP2   H N N 58  
DC  "H5'"  H N N 59  
DC  "H5''" H N N 60  
DC  "H4'"  H N N 61  
DC  "H3'"  H N N 62  
DC  "HO3'" H N N 63  
DC  "H2'"  H N N 64  
DC  "H2''" H N N 65  
DC  "H1'"  H N N 66  
DC  H41    H N N 67  
DC  H42    H N N 68  
DC  H5     H N N 69  
DC  H6     H N N 70  
DG  OP3    O N N 71  
DG  P      P N N 72  
DG  OP1    O N N 73  
DG  OP2    O N N 74  
DG  "O5'"  O N N 75  
DG  "C5'"  C N N 76  
DG  "C4'"  C N R 77  
DG  "O4'"  O N N 78  
DG  "C3'"  C N S 79  
DG  "O3'"  O N N 80  
DG  "C2'"  C N N 81  
DG  "C1'"  C N R 82  
DG  N9     N Y N 83  
DG  C8     C Y N 84  
DG  N7     N Y N 85  
DG  C5     C Y N 86  
DG  C6     C N N 87  
DG  O6     O N N 88  
DG  N1     N N N 89  
DG  C2     C N N 90  
DG  N2     N N N 91  
DG  N3     N N N 92  
DG  C4     C Y N 93  
DG  HOP3   H N N 94  
DG  HOP2   H N N 95  
DG  "H5'"  H N N 96  
DG  "H5''" H N N 97  
DG  "H4'"  H N N 98  
DG  "H3'"  H N N 99  
DG  "HO3'" H N N 100 
DG  "H2'"  H N N 101 
DG  "H2''" H N N 102 
DG  "H1'"  H N N 103 
DG  H8     H N N 104 
DG  H1     H N N 105 
DG  H21    H N N 106 
DG  H22    H N N 107 
DT  OP3    O N N 108 
DT  P      P N N 109 
DT  OP1    O N N 110 
DT  OP2    O N N 111 
DT  "O5'"  O N N 112 
DT  "C5'"  C N N 113 
DT  "C4'"  C N R 114 
DT  "O4'"  O N N 115 
DT  "C3'"  C N S 116 
DT  "O3'"  O N N 117 
DT  "C2'"  C N N 118 
DT  "C1'"  C N R 119 
DT  N1     N N N 120 
DT  C2     C N N 121 
DT  O2     O N N 122 
DT  N3     N N N 123 
DT  C4     C N N 124 
DT  O4     O N N 125 
DT  C5     C N N 126 
DT  C7     C N N 127 
DT  C6     C N N 128 
DT  HOP3   H N N 129 
DT  HOP2   H N N 130 
DT  "H5'"  H N N 131 
DT  "H5''" H N N 132 
DT  "H4'"  H N N 133 
DT  "H3'"  H N N 134 
DT  "HO3'" H N N 135 
DT  "H2'"  H N N 136 
DT  "H2''" H N N 137 
DT  "H1'"  H N N 138 
DT  H3     H N N 139 
DT  H71    H N N 140 
DT  H72    H N N 141 
DT  H73    H N N 142 
DT  H6     H N N 143 
HOH O      O N N 144 
HOH H1     H N N 145 
HOH H2     H N N 146 
HT  O1     O N N 147 
HT  C1     C Y N 148 
HT  C4     C Y N 149 
HT  C2     C Y N 150 
HT  C3     C Y N 151 
HT  C6     C Y N 152 
HT  C5     C Y N 153 
HT  C7     C Y N 154 
HT  N1     N Y N 155 
HT  C8     C Y N 156 
HT  C9     C Y N 157 
HT  N2     N Y N 158 
HT  C10    C Y N 159 
HT  C11    C Y N 160 
HT  C12    C Y N 161 
HT  C13    C Y N 162 
HT  C14    C Y N 163 
HT  N3     N Y N 164 
HT  C15    C Y N 165 
HT  C16    C Y N 166 
HT  N4     N Y N 167 
HT  C17    C Y N 168 
HT  C18    C Y N 169 
HT  C19    C Y N 170 
HT  C20    C Y N 171 
HT  N5     N N N 172 
HT  C21    C N N 173 
HT  C22    C N N 174 
HT  N6     N N N 175 
HT  C23    C N N 176 
HT  C24    C N N 177 
HT  C25    C N N 178 
HT  HO1    H N N 179 
HT  H2     H N N 180 
HT  H3     H N N 181 
HT  H5     H N N 182 
HT  H6     H N N 183 
HT  HN1    H N N 184 
HT  H10    H N N 185 
HT  H11    H N N 186 
HT  H13    H N N 187 
HT  HN3    H N N 188 
HT  H17    H N N 189 
HT  H18    H N N 190 
HT  H20    H N N 191 
HT  H211   H N N 192 
HT  H212   H N N 193 
HT  H221   H N N 194 
HT  H222   H N N 195 
HT  H231   H N N 196 
HT  H232   H N N 197 
HT  H241   H N N 198 
HT  H242   H N N 199 
HT  H253   H N N 200 
HT  H252   H N N 201 
HT  H251   H N N 202 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
HOH O     H1     sing N N 150 
HOH O     H2     sing N N 151 
HT  O1    C1     sing N N 152 
HT  O1    HO1    sing N N 153 
HT  C1    C2     doub Y N 154 
HT  C1    C6     sing Y N 155 
HT  C2    C3     sing Y N 156 
HT  C2    H2     sing N N 157 
HT  C3    C4     doub Y N 158 
HT  C3    H3     sing N N 159 
HT  C4    C5     sing Y N 160 
HT  C4    C7     sing Y N 161 
HT  C5    C6     doub Y N 162 
HT  C5    H5     sing N N 163 
HT  C6    H6     sing N N 164 
HT  C7    N1     sing Y N 165 
HT  C7    N2     doub Y N 166 
HT  N1    C8     sing Y N 167 
HT  N1    HN1    sing N N 168 
HT  C8    C9     doub Y N 169 
HT  C8    C13    sing Y N 170 
HT  C9    N2     sing Y N 171 
HT  C9    C10    sing Y N 172 
HT  C10   C11    doub Y N 173 
HT  C10   H10    sing N N 174 
HT  C11   C12    sing Y N 175 
HT  C11   H11    sing N N 176 
HT  C12   C13    doub Y N 177 
HT  C12   C14    sing Y N 178 
HT  C13   H13    sing N N 179 
HT  C14   N3     sing Y N 180 
HT  C14   N4     doub Y N 181 
HT  N3    C15    sing Y N 182 
HT  N3    HN3    sing N N 183 
HT  C15   C16    doub Y N 184 
HT  C15   C20    sing Y N 185 
HT  C16   N4     sing Y N 186 
HT  C16   C17    sing Y N 187 
HT  C17   C18    doub Y N 188 
HT  C17   H17    sing N N 189 
HT  C18   C19    sing Y N 190 
HT  C18   H18    sing N N 191 
HT  C19   C20    doub Y N 192 
HT  C19   N5     sing N N 193 
HT  C20   H20    sing N N 194 
HT  N5    C21    sing N N 195 
HT  N5    C24    sing N N 196 
HT  C21   C22    sing N N 197 
HT  C21   H211   sing N N 198 
HT  C21   H212   sing N N 199 
HT  C22   N6     sing N N 200 
HT  C22   H221   sing N N 201 
HT  C22   H222   sing N N 202 
HT  N6    C23    sing N N 203 
HT  N6    C25    sing N N 204 
HT  C23   C24    sing N N 205 
HT  C23   H231   sing N N 206 
HT  C23   H232   sing N N 207 
HT  C24   H241   sing N N 208 
HT  C24   H242   sing N N 209 
HT  C25   H253   sing N N 210 
HT  C25   H252   sing N N 211 
HT  C25   H251   sing N N 212 
# 
_ndb_struct_conf_na.entry_id   1DNH 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 12 1_555 -0.451 -0.064 -0.212 15.671  -1.926  1.788  1  A_DC1:DG24_B  A 1  ? B 24 ? 19 1 
1 A DG 2  1_555 B DC 11 1_555 -0.292 -0.158 0.395  1.971   -9.919  -2.138 2  A_DG2:DC23_B  A 2  ? B 23 ? 19 1 
1 A DC 3  1_555 B DG 10 1_555 -0.222 -0.354 0.241  -3.202  -8.110  -8.117 3  A_DC3:DG22_B  A 3  ? B 22 ? 19 1 
1 A DG 4  1_555 B DC 9  1_555 -0.339 -0.416 -0.091 7.637   -2.984  -5.889 4  A_DG4:DC21_B  A 4  ? B 21 ? 19 1 
1 A DA 5  1_555 B DT 8  1_555 -0.158 -0.215 0.006  4.521   -9.383  0.916  5  A_DA5:DT20_B  A 5  ? B 20 ? 20 1 
1 A DA 6  1_555 B DT 7  1_555 0.908  -0.242 -0.229 -2.431  -27.971 -1.882 6  A_DA6:DT19_B  A 6  ? B 19 ? 20 1 
1 A DT 7  1_555 B DA 6  1_555 -0.203 -0.249 -0.866 9.997   -16.544 -3.146 7  A_DT7:DA18_B  A 7  ? B 18 ? 20 1 
1 A DT 8  1_555 B DA 5  1_555 0.869  -0.295 -0.377 -12.082 -6.287  5.500  8  A_DT8:DA17_B  A 8  ? B 17 ? 20 1 
1 A DC 9  1_555 B DG 4  1_555 -0.111 -0.262 -0.199 -10.315 -8.325  -1.656 9  A_DC9:DG16_B  A 9  ? B 16 ? 19 1 
1 A DG 10 1_555 B DC 3  1_555 0.035  -0.195 -0.022 5.380   -7.226  4.702  10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 
1 A DC 11 1_555 B DG 2  1_555 0.486  -0.400 0.672  -0.234  -20.574 -4.665 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 
1 A DG 12 1_555 B DC 1  1_555 -0.716 -0.603 -0.294 -7.376  -6.978  -5.790 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 12 1_555 A DG 2  1_555 B DC 11 1_555 -0.246 0.450  3.654 -4.991 0.771   42.194 0.533  -0.229 3.666 1.067   
6.902   42.482 1  AA_DC1DG2:DC23DG24_BB   A 1  ? B 24 ? A 2  ? B 23 ? 
1 A DG 2  1_555 B DC 11 1_555 A DC 3  1_555 B DG 10 1_555 0.310  0.352  3.706 4.687  -3.137  36.552 1.035  0.228  3.675 -4.965  
-7.418  36.969 2  AA_DG2DC3:DG22DC23_BB   A 2  ? B 23 ? A 3  ? B 22 ? 
1 A DC 3  1_555 B DG 10 1_555 A DG 4  1_555 B DC 9  1_555 -0.192 0.747  3.255 1.768  3.379   32.170 0.741  0.657  3.299 6.070   
-3.177  32.390 3  AA_DC3DG4:DC21DG22_BB   A 3  ? B 22 ? A 4  ? B 21 ? 
1 A DG 4  1_555 B DC 9  1_555 A DA 5  1_555 B DT 8  1_555 -0.048 -0.383 3.389 -0.139 5.038   31.420 -1.645 0.061  3.289 9.229   
0.254   31.812 4  AA_DG4DA5:DT20DC21_BB   A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DA 5  1_555 B DT 8  1_555 A DA 6  1_555 B DT 7  1_555 -0.317 -0.033 3.449 0.701  1.889   47.173 -0.204 0.456  3.441 2.359   
-0.875  47.214 5  AA_DA5DA6:DT19DT20_BB   A 5  ? B 20 ? A 6  ? B 19 ? 
1 A DA 6  1_555 B DT 7  1_555 A DT 7  1_555 B DA 6  1_555 0.511  -0.733 2.822 5.265  0.072   24.617 -1.700 0.185  2.865 0.166   
-12.171 25.165 6  AA_DA6DT7:DA18DT19_BB   A 6  ? B 19 ? A 7  ? B 18 ? 
1 A DT 7  1_555 B DA 6  1_555 A DT 8  1_555 B DA 5  1_555 -0.025 -0.089 4.033 -0.988 4.735   41.880 -0.725 -0.091 4.000 6.597   
1.377   42.146 7  AA_DT7DT8:DA17DA18_BB   A 7  ? B 18 ? A 8  ? B 17 ? 
1 A DT 8  1_555 B DA 5  1_555 A DC 9  1_555 B DG 4  1_555 0.102  0.041  3.031 0.071  5.777   33.914 -0.768 -0.162 2.997 9.814   
-0.120  34.388 8  AA_DT8DC9:DG16DA17_BB   A 8  ? B 17 ? A 9  ? B 16 ? 
1 A DC 9  1_555 B DG 4  1_555 A DG 10 1_555 B DC 3  1_555 0.401  1.875  3.196 -3.598 -0.828  33.428 3.371  -1.260 3.092 -1.434  
6.231   33.625 9  AA_DC9DG10:DC15DG16_BB  A 9  ? B 16 ? A 10 ? B 15 ? 
1 A DG 10 1_555 B DC 3  1_555 A DC 11 1_555 B DG 2  1_555 -1.228 0.435  3.772 -8.115 -11.410 38.922 2.061  0.715  3.682 -16.488 
11.726  41.272 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A DC 11 1_555 B DG 2  1_555 A DG 12 1_555 B DC 1  1_555 0.337  0.416  3.568 11.883 5.426   31.306 -0.269 1.573  3.486 9.551   
-20.917 33.859 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
# 
_atom_sites.entry_id                    1DNH 
_atom_sites.fract_transf_matrix[1][1]   0.039635 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.024643 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015133 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
_atom_sites_footnote.id     1 
_atom_sites_footnote.text   'NO DISORDERED DRUG' 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_