HEADER OXIDOREDUCTASE 16-DEC-99 1DNU TITLE STRUCTURAL ANALYSES OF HUMAN MYELOPEROXIDASE-THIOCYANATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELOPEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MYELOPEROXIDASE LIGHT CHAIN CONTAINING RESIDUES 1 TO 104; COMPND 5 EC: 1.11.1.7; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MYELOPEROXIDASE; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: MYELOPEROXIDASE HEAVY CHAIN CONTAINING RESIDUES 113 TO 578; COMPND 10 EC: 1.11.1.7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BLOOD; SOURCE 6 CELL: NEUTROPHIL; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 TISSUE: BLOOD; SOURCE 12 CELL: NEUTROPHIL KEYWDS OXIDOREDUCTASE, PEROXIDASE, INHIBITOR COMPLEX THIOCYANATE, HALIDE KEYWDS 2 PEROXIDATION, NEUTROPHIL EXPDTA X-RAY DIFFRACTION AUTHOR M.BLAIR-JOHNSON,T.J.FIEDLER,R.E.FENNA REVDAT 6 29-JUL-20 1DNU 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 31-JAN-18 1DNU 1 REMARK REVDAT 4 13-JUL-11 1DNU 1 VERSN REVDAT 3 24-FEB-09 1DNU 1 VERSN REVDAT 2 17-FEB-04 1DNU 3 JRNL REMARK ATOM REVDAT 1 21-DEC-01 1DNU 0 JRNL AUTH M.BLAIR-JOHNSON,T.FIEDLER,R.FENNA JRNL TITL HUMAN MYELOPEROXIDASE: STRUCTURE OF A CYANIDE COMPLEX AND JRNL TITL 2 ITS INTERACTION WITH BROMIDE AND THIOCYANATE SUBSTRATES AT JRNL TITL 3 1.9 A RESOLUTION. JRNL REF BIOCHEMISTRY V. 40 13990 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11705390 JRNL DOI 10.1021/BI0111808 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 106892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION OF 5% OF REMARK 3 OBSERVED REFLECTIONS REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5345 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9142 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 337 REMARK 3 SOLVENT ATOMS : 839 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.223 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SLOW COOLING METHOD WITH REMARK 3 SIMULATED ANNEALING AND REMARK 3 BULK SOLVENT CORRECTION REMARK 4 REMARK 4 1DNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000010231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 84 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.13900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTAL IS GROWN FROM SODIUM ACETATE, REMARK 280 AMMONIUM SULFATE CALCIUM CHLORIDE, AND PEG MW 8000. IT WAS REMARK 280 SUBSEQUENTLY EQUILIBRATED WITH A SUBSTITUTE MOTHER LIQUOR WHICH REMARK 280 CONTAINED SODIUM THIOCYANATE., PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP WITH MACRO SEEDING, TEMPERATURE 22K, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.93500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER COMPOSED OF TWO REMARK 300 PSEUDO-MONOMERS MADE FROM A HEAVY AND LIGHT REMARK 300 CHAIN. THE SYMMETRY PARTNER IS GENERATED REMARK 300 VIA A ROTATION ABOUT THE NONCRYSTALLOGRAPHIC REMARK 300 TWO-FOLD. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 20 -8.38 -57.98 REMARK 500 SER A 42 -43.64 -154.26 REMARK 500 ASN C 114 112.77 81.21 REMARK 500 ASP C 142 -157.21 -83.09 REMARK 500 ASP C 218 78.17 -119.32 REMARK 500 SER C 315 157.69 178.89 REMARK 500 ARG C 333 5.48 -69.72 REMARK 500 ASN C 356 72.25 -107.79 REMARK 500 ASN C 457 94.46 -165.87 REMARK 500 ASN C 555 12.89 -157.99 REMARK 500 SER B 42 -46.47 -150.26 REMARK 500 ARG D 136 -54.44 -121.45 REMARK 500 ASP D 218 79.40 -116.95 REMARK 500 ASN D 225 100.35 -165.76 REMARK 500 ARG D 314 -74.70 -106.49 REMARK 500 ARG D 333 5.14 -69.63 REMARK 500 ASN D 457 98.49 -168.93 REMARK 500 ASN D 555 4.02 -156.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 96 O REMARK 620 2 ASP A 96 OD2 75.0 REMARK 620 3 THR C 168 O 76.1 149.5 REMARK 620 4 THR C 168 OG1 134.0 140.1 69.5 REMARK 620 5 PHE C 170 O 109.7 83.0 97.8 104.5 REMARK 620 6 ASP C 172 OD1 147.2 73.9 136.2 70.2 76.3 REMARK 620 7 SER C 174 OG 82.0 76.1 109.3 81.6 152.5 80.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 10 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 336 NE2 REMARK 620 2 HEM C 10 NA 105.2 REMARK 620 3 HEM C 10 NB 98.2 87.8 REMARK 620 4 HEM C 10 NC 91.2 163.5 87.7 REMARK 620 5 HEM C 10 ND 106.9 88.5 154.8 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 96 O REMARK 620 2 ASP B 96 OD2 73.6 REMARK 620 3 THR D 168 O 75.3 147.3 REMARK 620 4 THR D 168 OG1 136.0 144.2 68.2 REMARK 620 5 PHE D 170 O 106.5 84.4 95.2 100.5 REMARK 620 6 ASP D 172 OD1 149.8 77.4 134.7 69.1 78.4 REMARK 620 7 SER D 174 OG 85.2 79.9 107.1 83.0 156.9 81.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 107 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 634 O REMARK 620 2 HEM B 107 NA 73.9 REMARK 620 3 HEM B 107 NB 91.6 88.3 REMARK 620 4 HEM B 107 NC 92.5 166.0 88.8 REMARK 620 5 HEM B 107 ND 62.9 87.8 154.2 88.9 REMARK 620 6 HIS D 336 NE2 164.2 101.2 103.4 92.9 102.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D2V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BROMIDE-BOUND HUMAN MYELOPEROXIDASE ISOFORM C REMARK 900 AT PH 5.5 REMARK 900 RELATED ID: 1MHL RELATED DB: PDB REMARK 900 1MHL CONTAINS THE NATIVE PROTEIN STRUCTURE SOLVED TO 2.25 ANGSTROMS REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1MYP RELATED DB: PDB REMARK 900 1MYP CONTAINS THE CANINE MYELOPEROXIDASE STRUCTURE AT 3.0 ANGSTROMS REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1D5L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CYANIDE-BOUND HUMAN MYELOPEROXIDASE ISOFORM C REMARK 900 AT PH 5.5 REMARK 900 RELATED ID: 1D7W RELATED DB: PDB REMARK 900 1D7W CONTAINS THE 1.9 ANGSTROM RESOLUTION STRUCTURE OF HUMAN REMARK 900 MYELOPEROXIDASE COMPLEXED WITH CYANIDE AND BROMIDE REMARK 900 RELATED ID: 1CXP RELATED DB: PDB REMARK 900 STRUCTURE OF NATIVE MYELOPEROXIDASE AT 1.8 ANGSTROMS REMARK 900 RELATED ID: 1DNW RELATED DB: PDB REMARK 900 STURCTURAL ANALYSIS OF HUMAN MYELOPEROXIDASE-CYANIDE-THIOCYANATE REMARK 900 COMPLEX DBREF 1DNU A 1 104 UNP P05164 PERM_HUMAN 167 270 DBREF 1DNU B 1 104 UNP P05164 PERM_HUMAN 167 270 DBREF 1DNU C 113 578 UNP P05164 PERM_HUMAN 279 744 DBREF 1DNU D 113 578 UNP P05164 PERM_HUMAN 279 744 SEQADV 1DNU CSO C 150 UNP P05164 CYS 316 MODIFIED RESIDUE SEQADV 1DNU CSO D 150 UNP P05164 CYS 316 MODIFIED RESIDUE SEQRES 1 A 104 CYS PRO GLU GLN ASP LYS TYR ARG THR ILE THR GLY MET SEQRES 2 A 104 CYS ASN ASN ARG ARG SER PRO THR LEU GLY ALA SER ASN SEQRES 3 A 104 ARG ALA PHE VAL ARG TRP LEU PRO ALA GLU TYR GLU ASP SEQRES 4 A 104 GLY PHE SER LEU PRO TYR GLY TRP THR PRO GLY VAL LYS SEQRES 5 A 104 ARG ASN GLY PHE PRO VAL ALA LEU ALA ARG ALA VAL SER SEQRES 6 A 104 ASN GLU ILE VAL ARG PHE PRO THR ASP GLN LEU THR PRO SEQRES 7 A 104 ASP GLN GLU ARG SER LEU MET PHE MET GLN TRP GLY GLN SEQRES 8 A 104 LEU LEU ASP HIS ASP LEU ASP PHE THR PRO GLU PRO ALA SEQRES 1 C 466 VAL ASN CYS GLU THR SER CYS VAL GLN GLN PRO PRO CYS SEQRES 2 C 466 PHE PRO LEU LYS ILE PRO PRO ASN ASP PRO ARG ILE LYS SEQRES 3 C 466 ASN GLN ALA ASP CYS ILE PRO PHE PHE ARG SER CSO PRO SEQRES 4 C 466 ALA CYS PRO GLY SER ASN ILE THR ILE ARG ASN GLN ILE SEQRES 5 C 466 ASN ALA LEU THR SER PHE VAL ASP ALA SER MET VAL TYR SEQRES 6 C 466 GLY SER GLU GLU PRO LEU ALA ARG ASN LEU ARG ASN MET SEQRES 7 C 466 SER ASN GLN LEU GLY LEU LEU ALA VAL ASN GLN ARG PHE SEQRES 8 C 466 GLN ASP ASN GLY ARG ALA LEU LEU PRO PHE ASP ASN LEU SEQRES 9 C 466 HIS ASP ASP PRO CYS LEU LEU THR ASN ARG SER ALA ARG SEQRES 10 C 466 ILE PRO CYS PHE LEU ALA GLY ASP THR ARG SER SER GLU SEQRES 11 C 466 MET PRO GLU LEU THR SER MET HIS THR LEU LEU LEU ARG SEQRES 12 C 466 GLU HIS ASN ARG LEU ALA THR GLU LEU LYS SER LEU ASN SEQRES 13 C 466 PRO ARG TRP ASP GLY GLU ARG LEU TYR GLN GLU ALA ARG SEQRES 14 C 466 LYS ILE VAL GLY ALA MET VAL GLN ILE ILE THR TYR ARG SEQRES 15 C 466 ASP TYR LEU PRO LEU VAL LEU GLY PRO THR ALA MET ARG SEQRES 16 C 466 LYS TYR LEU PRO THR TYR ARG SER TYR ASN ASP SER VAL SEQRES 17 C 466 ASP PRO ARG ILE ALA ASN VAL PHE THR ASN ALA PHE ARG SEQRES 18 C 466 TYR GLY HIS THR LEU ILE GLN PRO PHE MET PHE ARG LEU SEQRES 19 C 466 ASP ASN ARG TYR GLN PRO MET GLU PRO ASN PRO ARG VAL SEQRES 20 C 466 PRO LEU SER ARG VAL PHE PHE ALA SER TRP ARG VAL VAL SEQRES 21 C 466 LEU GLU GLY GLY ILE ASP PRO ILE LEU ARG GLY LEU MET SEQRES 22 C 466 ALA THR PRO ALA LYS LEU ASN ARG GLN ASN GLN ILE ALA SEQRES 23 C 466 VAL ASP GLU ILE ARG GLU ARG LEU PHE GLU GLN VAL MET SEQRES 24 C 466 ARG ILE GLY LEU ASP LEU PRO ALA LEU ASN MET GLN ARG SEQRES 25 C 466 SER ARG ASP HIS GLY LEU PRO GLY TYR ASN ALA TRP ARG SEQRES 26 C 466 ARG PHE CYS GLY LEU PRO GLN PRO GLU THR VAL GLY GLN SEQRES 27 C 466 LEU GLY THR VAL LEU ARG ASN LEU LYS LEU ALA ARG LYS SEQRES 28 C 466 LEU MET GLU GLN TYR GLY THR PRO ASN ASN ILE ASP ILE SEQRES 29 C 466 TRP MET GLY GLY VAL SER GLU PRO LEU LYS ARG LYS GLY SEQRES 30 C 466 ARG VAL GLY PRO LEU LEU ALA CYS ILE ILE GLY THR GLN SEQRES 31 C 466 PHE ARG LYS LEU ARG ASP GLY ASP ARG PHE TRP TRP GLU SEQRES 32 C 466 ASN GLU GLY VAL PHE SER MET GLN GLN ARG GLN ALA LEU SEQRES 33 C 466 ALA GLN ILE SER LEU PRO ARG ILE ILE CYS ASP ASN THR SEQRES 34 C 466 GLY ILE THR THR VAL SER LYS ASN ASN ILE PHE MET SER SEQRES 35 C 466 ASN SER TYR PRO ARG ASP PHE VAL ASN CYS SER THR LEU SEQRES 36 C 466 PRO ALA LEU ASN LEU ALA SER TRP ARG GLU ALA SEQRES 1 B 104 CYS PRO GLU GLN ASP LYS TYR ARG THR ILE THR GLY MET SEQRES 2 B 104 CYS ASN ASN ARG ARG SER PRO THR LEU GLY ALA SER ASN SEQRES 3 B 104 ARG ALA PHE VAL ARG TRP LEU PRO ALA GLU TYR GLU ASP SEQRES 4 B 104 GLY PHE SER LEU PRO TYR GLY TRP THR PRO GLY VAL LYS SEQRES 5 B 104 ARG ASN GLY PHE PRO VAL ALA LEU ALA ARG ALA VAL SER SEQRES 6 B 104 ASN GLU ILE VAL ARG PHE PRO THR ASP GLN LEU THR PRO SEQRES 7 B 104 ASP GLN GLU ARG SER LEU MET PHE MET GLN TRP GLY GLN SEQRES 8 B 104 LEU LEU ASP HIS ASP LEU ASP PHE THR PRO GLU PRO ALA SEQRES 1 D 466 VAL ASN CYS GLU THR SER CYS VAL GLN GLN PRO PRO CYS SEQRES 2 D 466 PHE PRO LEU LYS ILE PRO PRO ASN ASP PRO ARG ILE LYS SEQRES 3 D 466 ASN GLN ALA ASP CYS ILE PRO PHE PHE ARG SER CSO PRO SEQRES 4 D 466 ALA CYS PRO GLY SER ASN ILE THR ILE ARG ASN GLN ILE SEQRES 5 D 466 ASN ALA LEU THR SER PHE VAL ASP ALA SER MET VAL TYR SEQRES 6 D 466 GLY SER GLU GLU PRO LEU ALA ARG ASN LEU ARG ASN MET SEQRES 7 D 466 SER ASN GLN LEU GLY LEU LEU ALA VAL ASN GLN ARG PHE SEQRES 8 D 466 GLN ASP ASN GLY ARG ALA LEU LEU PRO PHE ASP ASN LEU SEQRES 9 D 466 HIS ASP ASP PRO CYS LEU LEU THR ASN ARG SER ALA ARG SEQRES 10 D 466 ILE PRO CYS PHE LEU ALA GLY ASP THR ARG SER SER GLU SEQRES 11 D 466 MET PRO GLU LEU THR SER MET HIS THR LEU LEU LEU ARG SEQRES 12 D 466 GLU HIS ASN ARG LEU ALA THR GLU LEU LYS SER LEU ASN SEQRES 13 D 466 PRO ARG TRP ASP GLY GLU ARG LEU TYR GLN GLU ALA ARG SEQRES 14 D 466 LYS ILE VAL GLY ALA MET VAL GLN ILE ILE THR TYR ARG SEQRES 15 D 466 ASP TYR LEU PRO LEU VAL LEU GLY PRO THR ALA MET ARG SEQRES 16 D 466 LYS TYR LEU PRO THR TYR ARG SER TYR ASN ASP SER VAL SEQRES 17 D 466 ASP PRO ARG ILE ALA ASN VAL PHE THR ASN ALA PHE ARG SEQRES 18 D 466 TYR GLY HIS THR LEU ILE GLN PRO PHE MET PHE ARG LEU SEQRES 19 D 466 ASP ASN ARG TYR GLN PRO MET GLU PRO ASN PRO ARG VAL SEQRES 20 D 466 PRO LEU SER ARG VAL PHE PHE ALA SER TRP ARG VAL VAL SEQRES 21 D 466 LEU GLU GLY GLY ILE ASP PRO ILE LEU ARG GLY LEU MET SEQRES 22 D 466 ALA THR PRO ALA LYS LEU ASN ARG GLN ASN GLN ILE ALA SEQRES 23 D 466 VAL ASP GLU ILE ARG GLU ARG LEU PHE GLU GLN VAL MET SEQRES 24 D 466 ARG ILE GLY LEU ASP LEU PRO ALA LEU ASN MET GLN ARG SEQRES 25 D 466 SER ARG ASP HIS GLY LEU PRO GLY TYR ASN ALA TRP ARG SEQRES 26 D 466 ARG PHE CYS GLY LEU PRO GLN PRO GLU THR VAL GLY GLN SEQRES 27 D 466 LEU GLY THR VAL LEU ARG ASN LEU LYS LEU ALA ARG LYS SEQRES 28 D 466 LEU MET GLU GLN TYR GLY THR PRO ASN ASN ILE ASP ILE SEQRES 29 D 466 TRP MET GLY GLY VAL SER GLU PRO LEU LYS ARG LYS GLY SEQRES 30 D 466 ARG VAL GLY PRO LEU LEU ALA CYS ILE ILE GLY THR GLN SEQRES 31 D 466 PHE ARG LYS LEU ARG ASP GLY ASP ARG PHE TRP TRP GLU SEQRES 32 D 466 ASN GLU GLY VAL PHE SER MET GLN GLN ARG GLN ALA LEU SEQRES 33 D 466 ALA GLN ILE SER LEU PRO ARG ILE ILE CYS ASP ASN THR SEQRES 34 D 466 GLY ILE THR THR VAL SER LYS ASN ASN ILE PHE MET SER SEQRES 35 D 466 ASN SER TYR PRO ARG ASP PHE VAL ASN CYS SER THR LEU SEQRES 36 D 466 PRO ALA LEU ASN LEU ALA SER TRP ARG GLU ALA MODRES 1DNU ASN C 317 ASN GLYCOSYLATION SITE MODRES 1DNU ASN D 189 ASN GLYCOSYLATION SITE MODRES 1DNU ASN D 317 ASN GLYCOSYLATION SITE MODRES 1DNU ASN D 225 ASN GLYCOSYLATION SITE MODRES 1DNU ASN C 189 ASN GLYCOSYLATION SITE MODRES 1DNU ASN C 225 ASN GLYCOSYLATION SITE MODRES 1DNU CSO C 150 CYS S-HYDROXYCYSTEINE MODRES 1DNU CSO D 150 CYS S-HYDROXYCYSTEINE HET CSO C 150 7 HET CSO D 150 7 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET FUC E 6 10 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET MAN F 5 11 HET FUC F 6 10 HET SCN A 105 3 HET SO4 A 106 5 HET SCN A 107 3 HET NAG C 620 14 HET NAG C 630 14 HET CA C 1 1 HET SO4 C 9 5 HET HEM C 10 43 HET ACY C 15 4 HET ACY C 17 4 HET ACY C 16 4 HET SCN B 105 3 HET SCN B 106 3 HET HEM B 107 43 HET NAG D 620 14 HET NAG D 630 14 HET CA D 2 1 HET SO4 D 7 5 HET ACY D 14 4 HET ACY D 13 4 HET ACY D 12 4 HETNAM CSO S-HYDROXYCYSTEINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SCN THIOCYANATE ION HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ACY ACETIC ACID HETSYN HEM HEME FORMUL 2 CSO 2(C3 H7 N O3 S) FORMUL 5 NAG 8(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 5 MAN 4(C6 H12 O6) FORMUL 5 FUC 2(C6 H12 O5) FORMUL 7 SCN 4(C N S 1-) FORMUL 8 SO4 3(O4 S 2-) FORMUL 12 CA 2(CA 2+) FORMUL 14 HEM 2(C34 H32 FE N4 O4) FORMUL 15 ACY 6(C2 H4 O2) FORMUL 28 HOH *839(H2 O) HELIX 1 1 LEU A 60 VAL A 69 1 10 HELIX 2 2 PRO A 72 LEU A 76 5 5 HELIX 3 3 LEU A 84 ASP A 98 1 15 HELIX 4 4 ALA C 173 GLY C 178 1 6 HELIX 5 5 GLU C 180 LEU C 187 1 8 HELIX 6 6 PRO C 220 ASN C 225 1 6 HELIX 7 7 MET C 243 ASN C 268 1 26 HELIX 8 8 ASP C 272 ASP C 295 1 24 HELIX 9 9 TYR C 296 GLY C 302 1 7 HELIX 10 10 LEU C 301 LEU C 310 1 10 HELIX 11 11 ALA C 325 PHE C 332 1 8 HELIX 12 12 ARG C 333 ILE C 339 5 7 HELIX 13 13 SER C 362 VAL C 364 5 3 HELIX 14 14 ALA C 367 GLU C 374 1 8 HELIX 15 15 ILE C 377 ALA C 386 1 10 HELIX 16 16 VAL C 399 GLU C 404 1 6 HELIX 17 17 ASP C 416 HIS C 428 1 13 HELIX 18 18 GLY C 432 CYS C 440 1 9 HELIX 19 19 THR C 447 ARG C 456 1 10 HELIX 20 20 ASN C 457 GLY C 469 1 13 HELIX 21 21 ASP C 475 GLU C 483 1 9 HELIX 22 22 GLY C 492 GLY C 509 1 18 HELIX 23 23 SER C 521 ALA C 529 1 9 HELIX 24 24 SER C 532 THR C 541 1 10 HELIX 25 25 SER C 565 LEU C 567 5 3 HELIX 26 26 LEU C 572 ARG C 576 5 5 HELIX 27 27 LEU B 60 VAL B 69 1 10 HELIX 28 28 PRO B 72 LEU B 76 5 5 HELIX 29 29 LEU B 84 ASP B 98 1 15 HELIX 30 30 ALA D 173 GLY D 178 1 6 HELIX 31 31 GLU D 180 LEU D 187 1 8 HELIX 32 32 PRO D 220 ASN D 225 5 6 HELIX 33 33 MET D 243 ASN D 268 1 26 HELIX 34 34 ASP D 272 ASP D 295 1 24 HELIX 35 35 TYR D 296 GLY D 302 1 7 HELIX 36 36 LEU D 301 LEU D 310 1 10 HELIX 37 37 ALA D 325 PHE D 332 1 8 HELIX 38 38 ARG D 333 ILE D 339 5 7 HELIX 39 39 SER D 362 VAL D 364 5 3 HELIX 40 40 SER D 368 GLU D 374 1 7 HELIX 41 41 ILE D 377 THR D 387 1 11 HELIX 42 42 VAL D 399 GLU D 404 1 6 HELIX 43 43 PHE D 407 MET D 411 5 5 HELIX 44 44 ASP D 416 HIS D 428 1 13 HELIX 45 45 GLY D 432 CYS D 440 1 9 HELIX 46 46 THR D 447 ARG D 456 1 10 HELIX 47 47 ASN D 457 GLY D 469 1 13 HELIX 48 48 THR D 470 ILE D 474 5 5 HELIX 49 49 ASP D 475 GLU D 483 1 9 HELIX 50 50 GLY D 492 GLY D 509 1 18 HELIX 51 51 SER D 521 ALA D 529 1 9 HELIX 52 52 SER D 532 THR D 541 1 10 HELIX 53 53 SER D 565 LEU D 567 5 3 HELIX 54 54 LEU D 572 ARG D 576 5 5 SHEET 1 A 2 ARG A 27 ALA A 28 0 SHEET 2 A 2 ILE C 164 ASN C 165 -1 N ASN C 165 O ARG A 27 SHEET 1 B 2 PRO A 78 SER A 83 0 SHEET 2 B 2 PRO C 388 LYS C 390 -1 O ALA C 389 N ASP A 79 SHEET 1 C 2 LEU C 128 LYS C 129 0 SHEET 2 C 2 CYS C 143 ILE C 144 -1 O ILE C 144 N LEU C 128 SHEET 1 D 2 PHE C 342 PHE C 344 0 SHEET 2 D 2 ARG C 358 PRO C 360 -1 O VAL C 359 N MET C 343 SHEET 1 E 2 THR C 545 SER C 547 0 SHEET 2 E 2 PHE C 561 ASN C 563 -1 N VAL C 562 O VAL C 546 SHEET 1 F 2 ARG B 27 ALA B 28 0 SHEET 2 F 2 ILE D 164 ASN D 165 -1 N ASN D 165 O ARG B 27 SHEET 1 G 2 PRO B 78 SER B 83 0 SHEET 2 G 2 PRO D 388 LYS D 390 -1 O ALA D 389 N ASP B 79 SHEET 1 H 2 LEU D 128 LYS D 129 0 SHEET 2 H 2 CYS D 143 ILE D 144 -1 O ILE D 144 N LEU D 128 SHEET 1 I 2 GLN D 204 ASP D 205 0 SHEET 2 I 2 ARG D 208 ALA D 209 -1 O ARG D 208 N ASP D 205 SHEET 1 J 2 PHE D 342 PHE D 344 0 SHEET 2 J 2 ARG D 358 PRO D 360 -1 O VAL D 359 N MET D 343 SHEET 1 K 2 THR D 545 SER D 547 0 SHEET 2 K 2 PHE D 561 ASN D 563 -1 N VAL D 562 O VAL D 546 SSBOND 1 CYS A 1 CYS A 14 1555 1555 2.04 SSBOND 2 CYS C 115 CYS C 125 1555 1555 2.03 SSBOND 3 CYS C 119 CYS C 143 1555 1555 2.04 SSBOND 4 CYS C 153 CYS D 153 1555 1555 2.03 SSBOND 5 CYS C 221 CYS C 232 1555 1555 2.02 SSBOND 6 CYS C 440 CYS C 497 1555 1555 2.05 SSBOND 7 CYS C 538 CYS C 564 1555 1555 2.02 SSBOND 8 CYS B 1 CYS B 14 1555 1555 1.99 SSBOND 9 CYS D 115 CYS D 125 1555 1555 2.00 SSBOND 10 CYS D 119 CYS D 143 1555 1555 2.04 SSBOND 11 CYS D 221 CYS D 232 1555 1555 2.01 SSBOND 12 CYS D 440 CYS D 497 1555 1555 2.00 SSBOND 13 CYS D 538 CYS D 564 1555 1555 2.04 LINK OD1 ASP A 94 CMD HEM C 10 1555 1555 1.55 LINK CMB HEM C 10 OE2 GLU C 242 1555 1555 1.55 LINK CBB HEM C 10 SD MET C 243 1555 1555 1.63 LINK C SER C 149 N CSO C 150 1555 1555 1.34 LINK C CSO C 150 N PRO C 151 1555 1555 1.36 LINK ND2 ASN C 189 C1 NAG C 620 1555 1555 1.47 LINK ND2 ASN C 225 C1 NAG C 630 1555 1555 1.48 LINK ND2 ASN C 317 C1 NAG E 1 1555 1555 1.45 LINK OD1 ASP B 94 CMD HEM B 107 1555 1555 1.55 LINK CMB HEM B 107 OE2 GLU D 242 1555 1555 1.55 LINK CBB HEM B 107 SD MET D 243 1555 1555 1.61 LINK C SER D 149 N CSO D 150 1555 1555 1.34 LINK C CSO D 150 N PRO D 151 1555 1555 1.35 LINK ND2 ASN D 189 C1 NAG D 620 1555 1555 1.45 LINK ND2 ASN D 225 C1 NAG D 630 1555 1555 1.47 LINK ND2 ASN D 317 C1 NAG F 1 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.38 LINK O6 NAG E 1 C1 FUC E 6 1555 1555 1.41 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.40 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.40 LINK O6 BMA E 3 C1 MAN E 5 1555 1555 1.41 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.38 LINK O6 NAG F 1 C1 FUC F 6 1555 1555 1.42 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.39 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.39 LINK O6 BMA F 3 C1 MAN F 5 1555 1555 1.42 LINK O ASP A 96 CA CA C 1 1555 1555 2.32 LINK OD2 ASP A 96 CA CA C 1 1555 1555 2.50 LINK CA CA C 1 O THR C 168 1555 1555 2.37 LINK CA CA C 1 OG1 THR C 168 1555 1555 2.46 LINK CA CA C 1 O PHE C 170 1555 1555 2.36 LINK CA CA C 1 OD1 ASP C 172 1555 1555 2.50 LINK CA CA C 1 OG SER C 174 1555 1555 2.50 LINK FE HEM C 10 NE2 HIS C 336 1555 1555 2.18 LINK O ASP B 96 CA CA D 2 1555 1555 2.27 LINK OD2 ASP B 96 CA CA D 2 1555 1555 2.45 LINK FE HEM B 107 O HOH B 634 1555 1555 3.13 LINK FE HEM B 107 NE2 HIS D 336 1555 1555 2.18 LINK CA CA D 2 O THR D 168 1555 1555 2.38 LINK CA CA D 2 OG1 THR D 168 1555 1555 2.51 LINK CA CA D 2 O PHE D 170 1555 1555 2.40 LINK CA CA D 2 OD1 ASP D 172 1555 1555 2.52 LINK CA CA D 2 OG SER D 174 1555 1555 2.41 CISPEP 1 PRO C 123 PRO C 124 0 1.41 CISPEP 2 GLU C 354 PRO C 355 0 -0.34 CISPEP 3 ASN C 549 ASN C 550 0 1.31 CISPEP 4 TYR C 557 PRO C 558 0 0.51 CISPEP 5 PRO D 123 PRO D 124 0 0.45 CISPEP 6 GLU D 354 PRO D 355 0 1.97 CISPEP 7 ASN D 549 ASN D 550 0 0.53 CISPEP 8 TYR D 557 PRO D 558 0 0.66 CRYST1 111.240 63.870 92.620 90.00 97.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008988 0.000000 0.001185 0.00000 SCALE2 0.000000 0.015681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010893 0.00000