data_1DOG # _entry.id 1DOG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1DOG WWPDB D_1000172870 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DOG _pdbx_database_status.recvd_initial_deposition_date 1993-01-12 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Harris, E.' 1 'Aleshin, A.' 2 'Firsov, L.' 3 'Honzatko, R.B.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Refined structure for the complex of 1-deoxynojirimycin with glucoamylase from Aspergillus awamori var. X100 to 2.4-A resolution.' Biochemistry 32 1618 1626 1993 BICHAW US 0006-2960 0033 ? 8431441 10.1021/bi00057a028 1 'Crystal Structure of Glucoamylase from Aspergillus Awamori Var. X100 to 2.2-A Resolution' J.Biol.Chem. 267 19291 ? 1992 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Harris, E.M.' 1 ? primary 'Aleshin, A.E.' 2 ? primary 'Firsov, L.M.' 3 ? primary 'Honzatko, R.B.' 4 ? 1 'Aleshin, A.' 5 ? 1 'Golubev, A.' 6 ? 1 'Firsov, L.M.' 7 ? 1 'Honzatko, R.B.' 8 ? # _cell.entry_id 1DOG _cell.length_a 116.600 _cell.length_b 103.600 _cell.length_c 48.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DOG _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man GLUCOAMYLASE-471 50450.730 1 3.2.1.3 ? ? ? 2 branched man ;alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 1 ? ? ? ? 3 branched man ;alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 1397.245 1 ? ? ? ? 4 non-polymer man alpha-D-mannopyranose 180.156 10 ? ? ? ? 5 non-polymer syn 1-DEOXYNOJIRIMYCIN 163.172 2 ? ? ? ? 6 water nat water 18.015 605 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ATLDSWLSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDLFRNGDTDLLSTIEH YISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSWGRPQRDGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRN DLSYVAQYWNQTGYDLWEEVNGSSFFTIAVQHRALVEGSAFATAVGSSCSWCDSQAPQILCYLQSFWTGSYILANFDSSR SGKDTNTLLGSIHTFDPEAGCDDSTFQPCSPRALANHKEVVDSFRSIYTLNDGLSDSEAVAVGRYPEDSYYNGNPWFLCT LAAAEQLYDALYQWDKQGSLEITDVSLDFFKALYSGAATGTYSSSSSTYSSIVSAVKTFADGFVSIVETHAASNGSLSEQ FDKSDGDELSARDLTWSYAALLTANNRRNSVVPPSWGETSASSVPGTCAATSASGTYSSVTVTSWPSIVA ; _entity_poly.pdbx_seq_one_letter_code_can ;ATLDSWLSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDLFRNGDTDLLSTIEH YISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSWGRPQRDGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRN DLSYVAQYWNQTGYDLWEEVNGSSFFTIAVQHRALVEGSAFATAVGSSCSWCDSQAPQILCYLQSFWTGSYILANFDSSR SGKDTNTLLGSIHTFDPEAGCDDSTFQPCSPRALANHKEVVDSFRSIYTLNDGLSDSEAVAVGRYPEDSYYNGNPWFLCT LAAAEQLYDALYQWDKQGSLEITDVSLDFFKALYSGAATGTYSSSSSTYSSIVSAVKTFADGFVSIVETHAASNGSLSEQ FDKSDGDELSARDLTWSYAALLTANNRRNSVVPPSWGETSASSVPGTCAATSASGTYSSVTVTSWPSIVA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 THR n 1 3 LEU n 1 4 ASP n 1 5 SER n 1 6 TRP n 1 7 LEU n 1 8 SER n 1 9 ASN n 1 10 GLU n 1 11 ALA n 1 12 THR n 1 13 VAL n 1 14 ALA n 1 15 ARG n 1 16 THR n 1 17 ALA n 1 18 ILE n 1 19 LEU n 1 20 ASN n 1 21 ASN n 1 22 ILE n 1 23 GLY n 1 24 ALA n 1 25 ASP n 1 26 GLY n 1 27 ALA n 1 28 TRP n 1 29 VAL n 1 30 SER n 1 31 GLY n 1 32 ALA n 1 33 ASP n 1 34 SER n 1 35 GLY n 1 36 ILE n 1 37 VAL n 1 38 VAL n 1 39 ALA n 1 40 SER n 1 41 PRO n 1 42 SER n 1 43 THR n 1 44 ASP n 1 45 ASN n 1 46 PRO n 1 47 ASP n 1 48 TYR n 1 49 PHE n 1 50 TYR n 1 51 THR n 1 52 TRP n 1 53 THR n 1 54 ARG n 1 55 ASP n 1 56 SER n 1 57 GLY n 1 58 LEU n 1 59 VAL n 1 60 ILE n 1 61 LYS n 1 62 THR n 1 63 LEU n 1 64 VAL n 1 65 ASP n 1 66 LEU n 1 67 PHE n 1 68 ARG n 1 69 ASN n 1 70 GLY n 1 71 ASP n 1 72 THR n 1 73 ASP n 1 74 LEU n 1 75 LEU n 1 76 SER n 1 77 THR n 1 78 ILE n 1 79 GLU n 1 80 HIS n 1 81 TYR n 1 82 ILE n 1 83 SER n 1 84 SER n 1 85 GLN n 1 86 ALA n 1 87 ILE n 1 88 ILE n 1 89 GLN n 1 90 GLY n 1 91 VAL n 1 92 SER n 1 93 ASN n 1 94 PRO n 1 95 SER n 1 96 GLY n 1 97 ASP n 1 98 LEU n 1 99 SER n 1 100 SER n 1 101 GLY n 1 102 GLY n 1 103 LEU n 1 104 GLY n 1 105 GLU n 1 106 PRO n 1 107 LYS n 1 108 PHE n 1 109 ASN n 1 110 VAL n 1 111 ASP n 1 112 GLU n 1 113 THR n 1 114 ALA n 1 115 TYR n 1 116 THR n 1 117 GLY n 1 118 SER n 1 119 TRP n 1 120 GLY n 1 121 ARG n 1 122 PRO n 1 123 GLN n 1 124 ARG n 1 125 ASP n 1 126 GLY n 1 127 PRO n 1 128 ALA n 1 129 LEU n 1 130 ARG n 1 131 ALA n 1 132 THR n 1 133 ALA n 1 134 MET n 1 135 ILE n 1 136 GLY n 1 137 PHE n 1 138 GLY n 1 139 GLN n 1 140 TRP n 1 141 LEU n 1 142 LEU n 1 143 ASP n 1 144 ASN n 1 145 GLY n 1 146 TYR n 1 147 THR n 1 148 SER n 1 149 ALA n 1 150 ALA n 1 151 THR n 1 152 GLU n 1 153 ILE n 1 154 VAL n 1 155 TRP n 1 156 PRO n 1 157 LEU n 1 158 VAL n 1 159 ARG n 1 160 ASN n 1 161 ASP n 1 162 LEU n 1 163 SER n 1 164 TYR n 1 165 VAL n 1 166 ALA n 1 167 GLN n 1 168 TYR n 1 169 TRP n 1 170 ASN n 1 171 GLN n 1 172 THR n 1 173 GLY n 1 174 TYR n 1 175 ASP n 1 176 LEU n 1 177 TRP n 1 178 GLU n 1 179 GLU n 1 180 VAL n 1 181 ASN n 1 182 GLY n 1 183 SER n 1 184 SER n 1 185 PHE n 1 186 PHE n 1 187 THR n 1 188 ILE n 1 189 ALA n 1 190 VAL n 1 191 GLN n 1 192 HIS n 1 193 ARG n 1 194 ALA n 1 195 LEU n 1 196 VAL n 1 197 GLU n 1 198 GLY n 1 199 SER n 1 200 ALA n 1 201 PHE n 1 202 ALA n 1 203 THR n 1 204 ALA n 1 205 VAL n 1 206 GLY n 1 207 SER n 1 208 SER n 1 209 CYS n 1 210 SER n 1 211 TRP n 1 212 CYS n 1 213 ASP n 1 214 SER n 1 215 GLN n 1 216 ALA n 1 217 PRO n 1 218 GLN n 1 219 ILE n 1 220 LEU n 1 221 CYS n 1 222 TYR n 1 223 LEU n 1 224 GLN n 1 225 SER n 1 226 PHE n 1 227 TRP n 1 228 THR n 1 229 GLY n 1 230 SER n 1 231 TYR n 1 232 ILE n 1 233 LEU n 1 234 ALA n 1 235 ASN n 1 236 PHE n 1 237 ASP n 1 238 SER n 1 239 SER n 1 240 ARG n 1 241 SER n 1 242 GLY n 1 243 LYS n 1 244 ASP n 1 245 THR n 1 246 ASN n 1 247 THR n 1 248 LEU n 1 249 LEU n 1 250 GLY n 1 251 SER n 1 252 ILE n 1 253 HIS n 1 254 THR n 1 255 PHE n 1 256 ASP n 1 257 PRO n 1 258 GLU n 1 259 ALA n 1 260 GLY n 1 261 CYS n 1 262 ASP n 1 263 ASP n 1 264 SER n 1 265 THR n 1 266 PHE n 1 267 GLN n 1 268 PRO n 1 269 CYS n 1 270 SER n 1 271 PRO n 1 272 ARG n 1 273 ALA n 1 274 LEU n 1 275 ALA n 1 276 ASN n 1 277 HIS n 1 278 LYS n 1 279 GLU n 1 280 VAL n 1 281 VAL n 1 282 ASP n 1 283 SER n 1 284 PHE n 1 285 ARG n 1 286 SER n 1 287 ILE n 1 288 TYR n 1 289 THR n 1 290 LEU n 1 291 ASN n 1 292 ASP n 1 293 GLY n 1 294 LEU n 1 295 SER n 1 296 ASP n 1 297 SER n 1 298 GLU n 1 299 ALA n 1 300 VAL n 1 301 ALA n 1 302 VAL n 1 303 GLY n 1 304 ARG n 1 305 TYR n 1 306 PRO n 1 307 GLU n 1 308 ASP n 1 309 SER n 1 310 TYR n 1 311 TYR n 1 312 ASN n 1 313 GLY n 1 314 ASN n 1 315 PRO n 1 316 TRP n 1 317 PHE n 1 318 LEU n 1 319 CYS n 1 320 THR n 1 321 LEU n 1 322 ALA n 1 323 ALA n 1 324 ALA n 1 325 GLU n 1 326 GLN n 1 327 LEU n 1 328 TYR n 1 329 ASP n 1 330 ALA n 1 331 LEU n 1 332 TYR n 1 333 GLN n 1 334 TRP n 1 335 ASP n 1 336 LYS n 1 337 GLN n 1 338 GLY n 1 339 SER n 1 340 LEU n 1 341 GLU n 1 342 ILE n 1 343 THR n 1 344 ASP n 1 345 VAL n 1 346 SER n 1 347 LEU n 1 348 ASP n 1 349 PHE n 1 350 PHE n 1 351 LYS n 1 352 ALA n 1 353 LEU n 1 354 TYR n 1 355 SER n 1 356 GLY n 1 357 ALA n 1 358 ALA n 1 359 THR n 1 360 GLY n 1 361 THR n 1 362 TYR n 1 363 SER n 1 364 SER n 1 365 SER n 1 366 SER n 1 367 SER n 1 368 THR n 1 369 TYR n 1 370 SER n 1 371 SER n 1 372 ILE n 1 373 VAL n 1 374 SER n 1 375 ALA n 1 376 VAL n 1 377 LYS n 1 378 THR n 1 379 PHE n 1 380 ALA n 1 381 ASP n 1 382 GLY n 1 383 PHE n 1 384 VAL n 1 385 SER n 1 386 ILE n 1 387 VAL n 1 388 GLU n 1 389 THR n 1 390 HIS n 1 391 ALA n 1 392 ALA n 1 393 SER n 1 394 ASN n 1 395 GLY n 1 396 SER n 1 397 LEU n 1 398 SER n 1 399 GLU n 1 400 GLN n 1 401 PHE n 1 402 ASP n 1 403 LYS n 1 404 SER n 1 405 ASP n 1 406 GLY n 1 407 ASP n 1 408 GLU n 1 409 LEU n 1 410 SER n 1 411 ALA n 1 412 ARG n 1 413 ASP n 1 414 LEU n 1 415 THR n 1 416 TRP n 1 417 SER n 1 418 TYR n 1 419 ALA n 1 420 ALA n 1 421 LEU n 1 422 LEU n 1 423 THR n 1 424 ALA n 1 425 ASN n 1 426 ASN n 1 427 ARG n 1 428 ARG n 1 429 ASN n 1 430 SER n 1 431 VAL n 1 432 VAL n 1 433 PRO n 1 434 PRO n 1 435 SER n 1 436 TRP n 1 437 GLY n 1 438 GLU n 1 439 THR n 1 440 SER n 1 441 ALA n 1 442 SER n 1 443 SER n 1 444 VAL n 1 445 PRO n 1 446 GLY n 1 447 THR n 1 448 CYS n 1 449 ALA n 1 450 ALA n 1 451 THR n 1 452 SER n 1 453 ALA n 1 454 SER n 1 455 GLY n 1 456 THR n 1 457 TYR n 1 458 SER n 1 459 SER n 1 460 VAL n 1 461 THR n 1 462 VAL n 1 463 THR n 1 464 SER n 1 465 TRP n 1 466 PRO n 1 467 SER n 1 468 ILE n 1 469 VAL n 1 470 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Aspergillus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aspergillus awamori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 105351 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AMYG_ASPAK _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P23176 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MSFRSLLALSGLVCSGLASVISKRATLDSWLSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDS GIVLKTLVDLFRNGDTDLLSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYAGSWGRPQRDGPALRATAMIG FGQWLLDNGYTSAATEIVWPLVRNDLSYVAQYWNQTGYDLWEEVNGSSFFTIAVQHRALVEGSAFATAVGSSCSWCDSQA PQILCYLQSFWTGSYILANFDSSRSGKDTNTLLGSIHTFDPEAGCDDSTFQPCSPRALANHKEVVDSFRSIYTLNDGLSD SEAVAVGRYPEDSYYNGNPWFLCTLAAAEQLYDALYQWDKQGSLEITDVSLDFFKALYSGAATGTYSSSSSTYSSIVSAV KTFADGFVSIVETHAASNGSLSEQFDKSDGDELSARDLTWSYAALLTANNRRNSVVPPSWGETSASSVPGTCAATSASGT YSSVTVTSWPSIVATGGTTTTATTTGSGGVTSTSKTTTTASKTSTTTSSTSCTTPTAVAVTFDLTATTTYGENIYLVGSI SQLGDWETSDGIALSADKYTSSNPPWYVTVTLPAGESFEYKFIRVESDDSVEWESDPNREYTVPQACGESTATVTDTWR ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DOG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 470 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P23176 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 494 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 471 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1DOG LEU A 58 ? UNP P23176 ILE 82 conflict 58 1 1 1DOG ILE A 60 ? UNP P23176 LEU 84 conflict 60 2 1 1DOG THR A 116 ? UNP P23176 ALA 140 conflict 117 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 NOJ non-polymer . 1-DEOXYNOJIRIMYCIN MORANOLINE 'C6 H13 N O4' 163.172 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DOG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.89 _exptl_crystal.density_percent_sol 57.44 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1DOG _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.119 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3562 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 287 _refine_hist.number_atoms_solvent 605 _refine_hist.number_atoms_total 4454 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.012 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.030 0.030 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.040 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 0.605 1.000 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 1.037 1.500 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 1.865 2.000 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 2.817 3.000 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.012 0.020 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.137 0.150 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.225 0.250 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.159 0.250 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd 0.201 0.250 ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 2.2 3.0 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 14.2 10.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor 28.5 20.0 ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1DOG _struct.title ;REFINED STRUCTURE FOR THE COMPLEX OF 1-DEOXYNOJIRIMYCIN WITH GLUCOAMYLASE FROM (ASPERGILLUS AWAMORI) VAR. X100 TO 2.4 ANGSTROMS RESOLUTION ; _struct.pdbx_descriptor 'GLUCOAMYLASE-471 (GLUCAN 1,4-ALPHA-GLUCOSIDASE) (E.C.3.2.1.3) COMPLEXED WITH 1-DEOXYNOJIRIMYCIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DOG _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 5 ? O N N 5 ? P N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 ALA A 1 ? ASN A 20 ? ALA A 1 ASN A 20 1 ? 20 HELX_P HELX_P2 H2 THR A 53 ? ARG A 68 ? THR A 53 ARG A 68 1 ? 16 HELX_P HELX_P3 H3 THR A 72 ? GLN A 89 ? THR A 72 GLN A 89 1 ? 18 HELX_P HELX_P4 H4 ASP A 125 ? ASP A 143 ? ASP A 126 ASP A 144 1 ? 19 HELX_P HELX_P5 H5 THR A 147 ? GLN A 167 ? THR A 148 GLN A 168 1 ? 21 HELX_P HELX_P6 H6 PHE A 185 ? ALA A 204 ? PHE A 186 ALA A 205 1 ? 20 HELX_P HELX_P7 H7 SER A 210 ? PHE A 226 ? SER A 211 PHE A 227 1 ? 17 HELX_P HELX_P8 H8 ASP A 244 ? HIS A 253 ? ASP A 245 HIS A 254 1 ? 10 HELX_P HELX_P9 H9 PRO A 271 ? PHE A 284 ? PRO A 272 PHE A 285 1 ? 14 HELX_P HELX_P10 H10 PHE A 317 ? GLN A 337 ? PHE A 318 GLN A 338 1 ? 21 HELX_P HELX_P11 H11 ASP A 344 ? LEU A 353 ? ASP A 345 LEU A 354 1 'NOT PART OF THE BARREL' 10 HELX_P HELX_P12 H12 SER A 367 ? HIS A 390 ? SER A 368 HIS A 391 1 ? 24 HELX_P HELX_P13 H13 THR A 415 ? ARG A 428 ? THR A 416 ARG A 429 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 209 SG ? ? ? 1_555 A CYS 212 SG ? ? A CYS 210 A CYS 213 1_555 ? ? ? ? ? ? ? 2.001 ? ? disulf2 disulf ? ? A CYS 221 SG ? ? ? 1_555 A CYS 448 SG ? ? A CYS 222 A CYS 449 1_555 ? ? ? ? ? ? ? 1.977 ? ? disulf3 disulf ? ? A CYS 261 SG ? ? ? 1_555 A CYS 269 SG ? ? A CYS 262 A CYS 270 1_555 ? ? ? ? ? ? ? 2.040 ? ? covale1 covale one ? A ASN 170 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 171 B NAG 1 1_555 ? ? ? ? ? ? ? 1.386 ? N-Glycosylation covale2 covale one ? A ASN 394 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 395 C NAG 1 1_555 ? ? ? ? ? ? ? 1.367 ? N-Glycosylation covale3 covale one ? A SER 442 OG ? ? ? 1_555 D MAN . C1 ? ? A SER 443 A MAN 485 1_555 ? ? ? ? ? ? ? 1.362 ? O-Glycosylation covale4 covale one ? A SER 443 OG ? ? ? 1_555 E MAN . C1 ? ? A SER 444 A MAN 486 1_555 ? ? ? ? ? ? ? 1.385 ? O-Glycosylation covale5 covale one ? A THR 451 OG1 ? ? ? 1_555 F MAN . C1 ? ? A THR 452 A MAN 487 1_555 ? ? ? ? ? ? ? 1.391 ? O-Glycosylation covale6 covale one ? A SER 452 OG ? ? ? 1_555 G MAN . C1 ? ? A SER 453 A MAN 488 1_555 ? ? ? ? ? ? ? 1.358 ? O-Glycosylation covale7 covale one ? A SER 454 OG ? ? ? 1_555 H MAN . C1 ? ? A SER 455 A MAN 489 1_555 ? ? ? ? ? ? ? 1.386 ? O-Glycosylation covale8 covale one ? A THR 456 OG1 ? ? ? 1_555 I MAN . C1 ? ? A THR 457 A MAN 490 1_555 ? ? ? ? ? ? ? 1.409 ? O-Glycosylation covale9 covale one ? A SER 458 OG ? ? ? 1_555 J MAN . C1 ? ? A SER 459 A MAN 491 1_555 ? ? ? ? ? ? ? 1.394 ? O-Glycosylation covale10 covale one ? A SER 459 OG ? ? ? 1_555 K MAN . C1 ? ? A SER 460 A MAN 492 1_555 ? ? ? ? ? ? ? 1.398 ? O-Glycosylation covale11 covale one ? A THR 461 OG1 ? ? ? 1_555 L MAN . C1 ? ? A THR 462 A MAN 493 1_555 ? ? ? ? ? ? ? 1.393 ? O-Glycosylation covale12 covale one ? A THR 463 OG1 ? ? ? 1_555 M MAN . C1 ? ? A THR 464 A MAN 494 1_555 ? ? ? ? ? ? ? 1.395 ? O-Glycosylation covale13 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale14 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.392 ? ? covale15 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale16 covale both ? B MAN . O2 ? ? ? 1_555 B MAN . C1 ? ? B MAN 4 B MAN 5 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale17 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.393 ? ? covale18 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale19 covale both ? C BMA . O3 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale20 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 7 1_555 ? ? ? ? ? ? ? 1.394 ? ? covale21 covale both ? C MAN . O2 ? ? ? 1_555 C MAN . C1 ? ? C MAN 4 C MAN 5 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale22 covale both ? C MAN . O2 ? ? ? 1_555 C MAN . C1 ? ? C MAN 5 C MAN 6 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale23 covale both ? C MAN . O3 ? ? ? 1_555 C MAN . C1 ? ? C MAN 7 C MAN 8 1_555 ? ? ? ? ? ? ? 1.397 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 23 A . ? GLY 23 A ALA 24 A ? ALA 24 A 1 0.21 2 ASN 45 A . ? ASN 45 A PRO 46 A ? PRO 46 A 1 -1.95 3 ARG 121 A . ? ARG 122 A PRO 122 A ? PRO 123 A 1 -1.10 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 2 ? S2 ? 3 ? S3 ? 2 ? S4 ? 2 ? S5 ? 2 ? S6 ? 2 ? S7 ? 2 ? S8 ? 2 ? S9 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? anti-parallel S3 1 2 ? anti-parallel S4 1 2 ? anti-parallel S5 1 2 ? anti-parallel S6 1 2 ? anti-parallel S7 1 2 ? anti-parallel S8 1 2 ? anti-parallel S9 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 ASN A 21 ? GLY A 23 ? ASN A 21 GLY A 23 S1 2 GLY A 35 ? VAL A 38 ? GLY A 35 VAL A 38 S2 1 PHE A 49 ? THR A 53 ? PHE A 49 THR A 53 S2 2 PRO A 106 ? ASN A 109 ? PRO A 107 ASN A 110 S2 3 GLU A 112 ? TYR A 115 ? GLU A 113 TYR A 116 S3 1 VAL A 91 ? ASN A 93 ? VAL A 91 ASN A 93 S3 2 GLY A 96 ? ASP A 97 ? GLY A 96 ASP A 97 S4 1 THR A 172 ? ASP A 175 ? THR A 173 ASP A 176 S4 2 VAL A 180 ? GLY A 182 ? VAL A 181 GLY A 183 S5 1 SER A 183 ? SER A 184 ? SER A 184 SER A 185 S5 2 ALA A 234 ? PHE A 236 ? ALA A 235 PHE A 237 S6 1 CYS A 261 ? ASP A 263 ? CYS A 262 ASP A 264 S6 2 PHE A 266 ? GLN A 267 ? PHE A 267 GLN A 268 S7 1 GLY A 338 ? THR A 343 ? GLY A 339 THR A 344 S7 2 THR A 359 ? SER A 364 ? THR A 360 SER A 365 S8 1 ALA A 391 ? ALA A 392 ? ALA A 392 ALA A 393 S8 2 GLY A 395 ? SER A 396 ? GLY A 396 SER A 397 S9 1 LEU A 397 ? ASP A 402 ? LEU A 398 ASP A 403 S9 2 GLY A 406 ? LEU A 414 ? GLY A 407 LEU A 415 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1 1 2 N GLY A 23 ? N GLY A 23 O ILE A 36 ? O ILE A 36 S2 1 2 N THR A 51 ? N THR A 51 O PHE A 108 ? O PHE A 109 S2 2 3 N ASN A 109 ? N ASN A 110 O THR A 113 ? O THR A 114 S3 1 2 N ASN A 93 ? N ASN A 93 O GLY A 96 ? O GLY A 96 S4 1 2 O GLY A 173 ? O GLY A 174 N GLY A 182 ? N GLY A 183 S5 1 2 O SER A 183 ? O SER A 184 N PHE A 236 ? N PHE A 237 S6 1 2 O ASP A 263 ? O ASP A 264 N PHE A 266 ? N PHE A 267 S7 1 2 O LEU A 340 ? O LEU A 341 N TYR A 362 ? N TYR A 363 S8 1 2 O ALA A 392 ? O ALA A 393 N GLY A 395 ? N GLY A 396 S9 1 2 N GLU A 399 ? N GLU A 400 O ALA A 411 ? O ALA A 412 # _database_PDB_matrix.entry_id 1DOG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DOG _atom_sites.fract_transf_matrix[1][1] 0.008576 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009653 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020704 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'A CIS-PEPTIDE LINK EXISTS BETWEEN GLY 23 AND ALA 24.' 2 'RESIDUES ASN 171 AND ASN 395 ARE SITES OF N-GLYCOSYLATION.' 3 'RESIDUES SER 443, SER 444, THR 452, SER 453, SER 455, THR 457, SER 459, SER 460, THR 462 AND THR 464 ARE SITES OF O-GLYCOSYLATION.' 4 'RESIDUES PRO 46 AND PRO 123 ARE CIS PROLINES.' 5 'WATERS 1200, 1201 AND 1202 WERE CO-REFINED WITH NOJ 481.' # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 HIS 80 80 80 HIS HIS A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 GLY 102 103 103 GLY GLY A . n A 1 103 LEU 103 104 104 LEU LEU A . n A 1 104 GLY 104 105 105 GLY GLY A . n A 1 105 GLU 105 106 106 GLU GLU A . n A 1 106 PRO 106 107 107 PRO PRO A . n A 1 107 LYS 107 108 108 LYS LYS A . n A 1 108 PHE 108 109 109 PHE PHE A . n A 1 109 ASN 109 110 110 ASN ASN A . n A 1 110 VAL 110 111 111 VAL VAL A . n A 1 111 ASP 111 112 112 ASP ASP A . n A 1 112 GLU 112 113 113 GLU GLU A . n A 1 113 THR 113 114 114 THR THR A . n A 1 114 ALA 114 115 115 ALA ALA A . n A 1 115 TYR 115 116 116 TYR TYR A . n A 1 116 THR 116 117 117 THR THR A . n A 1 117 GLY 117 118 118 GLY GLY A . n A 1 118 SER 118 119 119 SER SER A . n A 1 119 TRP 119 120 120 TRP TRP A . n A 1 120 GLY 120 121 121 GLY GLY A . n A 1 121 ARG 121 122 122 ARG ARG A . n A 1 122 PRO 122 123 123 PRO PRO A . n A 1 123 GLN 123 124 124 GLN GLN A . n A 1 124 ARG 124 125 125 ARG ARG A . n A 1 125 ASP 125 126 126 ASP ASP A . n A 1 126 GLY 126 127 127 GLY GLY A . n A 1 127 PRO 127 128 128 PRO PRO A . n A 1 128 ALA 128 129 129 ALA ALA A . n A 1 129 LEU 129 130 130 LEU LEU A . n A 1 130 ARG 130 131 131 ARG ARG A . n A 1 131 ALA 131 132 132 ALA ALA A . n A 1 132 THR 132 133 133 THR THR A . n A 1 133 ALA 133 134 134 ALA ALA A . n A 1 134 MET 134 135 135 MET MET A . n A 1 135 ILE 135 136 136 ILE ILE A . n A 1 136 GLY 136 137 137 GLY GLY A . n A 1 137 PHE 137 138 138 PHE PHE A . n A 1 138 GLY 138 139 139 GLY GLY A . n A 1 139 GLN 139 140 140 GLN GLN A . n A 1 140 TRP 140 141 141 TRP TRP A . n A 1 141 LEU 141 142 142 LEU LEU A . n A 1 142 LEU 142 143 143 LEU LEU A . n A 1 143 ASP 143 144 144 ASP ASP A . n A 1 144 ASN 144 145 145 ASN ASN A . n A 1 145 GLY 145 146 146 GLY GLY A . n A 1 146 TYR 146 147 147 TYR TYR A . n A 1 147 THR 147 148 148 THR THR A . n A 1 148 SER 148 149 149 SER SER A . n A 1 149 ALA 149 150 150 ALA ALA A . n A 1 150 ALA 150 151 151 ALA ALA A . n A 1 151 THR 151 152 152 THR THR A . n A 1 152 GLU 152 153 153 GLU GLU A . n A 1 153 ILE 153 154 154 ILE ILE A . n A 1 154 VAL 154 155 155 VAL VAL A . n A 1 155 TRP 155 156 156 TRP TRP A . n A 1 156 PRO 156 157 157 PRO PRO A . n A 1 157 LEU 157 158 158 LEU LEU A . n A 1 158 VAL 158 159 159 VAL VAL A . n A 1 159 ARG 159 160 160 ARG ARG A . n A 1 160 ASN 160 161 161 ASN ASN A . n A 1 161 ASP 161 162 162 ASP ASP A . n A 1 162 LEU 162 163 163 LEU LEU A . n A 1 163 SER 163 164 164 SER SER A . n A 1 164 TYR 164 165 165 TYR TYR A . n A 1 165 VAL 165 166 166 VAL VAL A . n A 1 166 ALA 166 167 167 ALA ALA A . n A 1 167 GLN 167 168 168 GLN GLN A . n A 1 168 TYR 168 169 169 TYR TYR A . n A 1 169 TRP 169 170 170 TRP TRP A . n A 1 170 ASN 170 171 171 ASN ASN A . n A 1 171 GLN 171 172 172 GLN GLN A . n A 1 172 THR 172 173 173 THR THR A . n A 1 173 GLY 173 174 174 GLY GLY A . n A 1 174 TYR 174 175 175 TYR TYR A . n A 1 175 ASP 175 176 176 ASP ASP A . n A 1 176 LEU 176 177 177 LEU LEU A . n A 1 177 TRP 177 178 178 TRP TRP A . n A 1 178 GLU 178 179 179 GLU GLU A . n A 1 179 GLU 179 180 180 GLU GLU A . n A 1 180 VAL 180 181 181 VAL VAL A . n A 1 181 ASN 181 182 182 ASN ASN A . n A 1 182 GLY 182 183 183 GLY GLY A . n A 1 183 SER 183 184 184 SER SER A . n A 1 184 SER 184 185 185 SER SER A . n A 1 185 PHE 185 186 186 PHE PHE A . n A 1 186 PHE 186 187 187 PHE PHE A . n A 1 187 THR 187 188 188 THR THR A . n A 1 188 ILE 188 189 189 ILE ILE A . n A 1 189 ALA 189 190 190 ALA ALA A . n A 1 190 VAL 190 191 191 VAL VAL A . n A 1 191 GLN 191 192 192 GLN GLN A . n A 1 192 HIS 192 193 193 HIS HIS A . n A 1 193 ARG 193 194 194 ARG ARG A . n A 1 194 ALA 194 195 195 ALA ALA A . n A 1 195 LEU 195 196 196 LEU LEU A . n A 1 196 VAL 196 197 197 VAL VAL A . n A 1 197 GLU 197 198 198 GLU GLU A . n A 1 198 GLY 198 199 199 GLY GLY A . n A 1 199 SER 199 200 200 SER SER A . n A 1 200 ALA 200 201 201 ALA ALA A . n A 1 201 PHE 201 202 202 PHE PHE A . n A 1 202 ALA 202 203 203 ALA ALA A . n A 1 203 THR 203 204 204 THR THR A . n A 1 204 ALA 204 205 205 ALA ALA A . n A 1 205 VAL 205 206 206 VAL VAL A . n A 1 206 GLY 206 207 207 GLY GLY A . n A 1 207 SER 207 208 208 SER SER A . n A 1 208 SER 208 209 209 SER SER A . n A 1 209 CYS 209 210 210 CYS CYS A . n A 1 210 SER 210 211 211 SER SER A . n A 1 211 TRP 211 212 212 TRP TRP A . n A 1 212 CYS 212 213 213 CYS CYS A . n A 1 213 ASP 213 214 214 ASP ASP A . n A 1 214 SER 214 215 215 SER SER A . n A 1 215 GLN 215 216 216 GLN GLN A . n A 1 216 ALA 216 217 217 ALA ALA A . n A 1 217 PRO 217 218 218 PRO PRO A . n A 1 218 GLN 218 219 219 GLN GLN A . n A 1 219 ILE 219 220 220 ILE ILE A . n A 1 220 LEU 220 221 221 LEU LEU A . n A 1 221 CYS 221 222 222 CYS CYS A . n A 1 222 TYR 222 223 223 TYR TYR A . n A 1 223 LEU 223 224 224 LEU LEU A . n A 1 224 GLN 224 225 225 GLN GLN A . n A 1 225 SER 225 226 226 SER SER A . n A 1 226 PHE 226 227 227 PHE PHE A . n A 1 227 TRP 227 228 228 TRP TRP A . n A 1 228 THR 228 229 229 THR THR A . n A 1 229 GLY 229 230 230 GLY GLY A . n A 1 230 SER 230 231 231 SER SER A . n A 1 231 TYR 231 232 232 TYR TYR A . n A 1 232 ILE 232 233 233 ILE ILE A . n A 1 233 LEU 233 234 234 LEU LEU A . n A 1 234 ALA 234 235 235 ALA ALA A . n A 1 235 ASN 235 236 236 ASN ASN A . n A 1 236 PHE 236 237 237 PHE PHE A . n A 1 237 ASP 237 238 238 ASP ASP A . n A 1 238 SER 238 239 239 SER SER A . n A 1 239 SER 239 240 240 SER SER A . n A 1 240 ARG 240 241 241 ARG ARG A . n A 1 241 SER 241 242 242 SER SER A . n A 1 242 GLY 242 243 243 GLY GLY A . n A 1 243 LYS 243 244 244 LYS LYS A . n A 1 244 ASP 244 245 245 ASP ASP A . n A 1 245 THR 245 246 246 THR THR A . n A 1 246 ASN 246 247 247 ASN ASN A . n A 1 247 THR 247 248 248 THR THR A . n A 1 248 LEU 248 249 249 LEU LEU A . n A 1 249 LEU 249 250 250 LEU LEU A . n A 1 250 GLY 250 251 251 GLY GLY A . n A 1 251 SER 251 252 252 SER SER A . n A 1 252 ILE 252 253 253 ILE ILE A . n A 1 253 HIS 253 254 254 HIS HIS A . n A 1 254 THR 254 255 255 THR THR A . n A 1 255 PHE 255 256 256 PHE PHE A . n A 1 256 ASP 256 257 257 ASP ASP A . n A 1 257 PRO 257 258 258 PRO PRO A . n A 1 258 GLU 258 259 259 GLU GLU A . n A 1 259 ALA 259 260 260 ALA ALA A . n A 1 260 GLY 260 261 261 GLY GLY A . n A 1 261 CYS 261 262 262 CYS CYS A . n A 1 262 ASP 262 263 263 ASP ASP A . n A 1 263 ASP 263 264 264 ASP ASP A . n A 1 264 SER 264 265 265 SER SER A . n A 1 265 THR 265 266 266 THR THR A . n A 1 266 PHE 266 267 267 PHE PHE A . n A 1 267 GLN 267 268 268 GLN GLN A . n A 1 268 PRO 268 269 269 PRO PRO A . n A 1 269 CYS 269 270 270 CYS CYS A . n A 1 270 SER 270 271 271 SER SER A . n A 1 271 PRO 271 272 272 PRO PRO A . n A 1 272 ARG 272 273 273 ARG ARG A . n A 1 273 ALA 273 274 274 ALA ALA A . n A 1 274 LEU 274 275 275 LEU LEU A . n A 1 275 ALA 275 276 276 ALA ALA A . n A 1 276 ASN 276 277 277 ASN ASN A . n A 1 277 HIS 277 278 278 HIS HIS A . n A 1 278 LYS 278 279 279 LYS LYS A . n A 1 279 GLU 279 280 280 GLU GLU A . n A 1 280 VAL 280 281 281 VAL VAL A . n A 1 281 VAL 281 282 282 VAL VAL A . n A 1 282 ASP 282 283 283 ASP ASP A . n A 1 283 SER 283 284 284 SER SER A . n A 1 284 PHE 284 285 285 PHE PHE A . n A 1 285 ARG 285 286 286 ARG ARG A . n A 1 286 SER 286 287 287 SER SER A . n A 1 287 ILE 287 288 288 ILE ILE A . n A 1 288 TYR 288 289 289 TYR TYR A . n A 1 289 THR 289 290 290 THR THR A . n A 1 290 LEU 290 291 291 LEU LEU A . n A 1 291 ASN 291 292 292 ASN ASN A . n A 1 292 ASP 292 293 293 ASP ASP A . n A 1 293 GLY 293 294 294 GLY GLY A . n A 1 294 LEU 294 295 295 LEU LEU A . n A 1 295 SER 295 296 296 SER SER A . n A 1 296 ASP 296 297 297 ASP ASP A . n A 1 297 SER 297 298 298 SER SER A . n A 1 298 GLU 298 299 299 GLU GLU A . n A 1 299 ALA 299 300 300 ALA ALA A . n A 1 300 VAL 300 301 301 VAL VAL A . n A 1 301 ALA 301 302 302 ALA ALA A . n A 1 302 VAL 302 303 303 VAL VAL A . n A 1 303 GLY 303 304 304 GLY GLY A . n A 1 304 ARG 304 305 305 ARG ARG A . n A 1 305 TYR 305 306 306 TYR TYR A . n A 1 306 PRO 306 307 307 PRO PRO A . n A 1 307 GLU 307 308 308 GLU GLU A . n A 1 308 ASP 308 309 309 ASP ASP A . n A 1 309 SER 309 310 310 SER SER A . n A 1 310 TYR 310 311 311 TYR TYR A . n A 1 311 TYR 311 312 312 TYR TYR A . n A 1 312 ASN 312 313 313 ASN ASN A . n A 1 313 GLY 313 314 314 GLY GLY A . n A 1 314 ASN 314 315 315 ASN ASN A . n A 1 315 PRO 315 316 316 PRO PRO A . n A 1 316 TRP 316 317 317 TRP TRP A . n A 1 317 PHE 317 318 318 PHE PHE A . n A 1 318 LEU 318 319 319 LEU LEU A . n A 1 319 CYS 319 320 320 CYS CYS A . n A 1 320 THR 320 321 321 THR THR A . n A 1 321 LEU 321 322 322 LEU LEU A . n A 1 322 ALA 322 323 323 ALA ALA A . n A 1 323 ALA 323 324 324 ALA ALA A . n A 1 324 ALA 324 325 325 ALA ALA A . n A 1 325 GLU 325 326 326 GLU GLU A . n A 1 326 GLN 326 327 327 GLN GLN A . n A 1 327 LEU 327 328 328 LEU LEU A . n A 1 328 TYR 328 329 329 TYR TYR A . n A 1 329 ASP 329 330 330 ASP ASP A . n A 1 330 ALA 330 331 331 ALA ALA A . n A 1 331 LEU 331 332 332 LEU LEU A . n A 1 332 TYR 332 333 333 TYR TYR A . n A 1 333 GLN 333 334 334 GLN GLN A . n A 1 334 TRP 334 335 335 TRP TRP A . n A 1 335 ASP 335 336 336 ASP ASP A . n A 1 336 LYS 336 337 337 LYS LYS A . n A 1 337 GLN 337 338 338 GLN GLN A . n A 1 338 GLY 338 339 339 GLY GLY A . n A 1 339 SER 339 340 340 SER SER A . n A 1 340 LEU 340 341 341 LEU LEU A . n A 1 341 GLU 341 342 342 GLU GLU A . n A 1 342 ILE 342 343 343 ILE ILE A . n A 1 343 THR 343 344 344 THR THR A . n A 1 344 ASP 344 345 345 ASP ASP A . n A 1 345 VAL 345 346 346 VAL VAL A . n A 1 346 SER 346 347 347 SER SER A . n A 1 347 LEU 347 348 348 LEU LEU A . n A 1 348 ASP 348 349 349 ASP ASP A . n A 1 349 PHE 349 350 350 PHE PHE A . n A 1 350 PHE 350 351 351 PHE PHE A . n A 1 351 LYS 351 352 352 LYS LYS A . n A 1 352 ALA 352 353 353 ALA ALA A . n A 1 353 LEU 353 354 354 LEU LEU A . n A 1 354 TYR 354 355 355 TYR TYR A . n A 1 355 SER 355 356 356 SER SER A . n A 1 356 GLY 356 357 357 GLY GLY A . n A 1 357 ALA 357 358 358 ALA ALA A . n A 1 358 ALA 358 359 359 ALA ALA A . n A 1 359 THR 359 360 360 THR THR A . n A 1 360 GLY 360 361 361 GLY GLY A . n A 1 361 THR 361 362 362 THR THR A . n A 1 362 TYR 362 363 363 TYR TYR A . n A 1 363 SER 363 364 364 SER SER A . n A 1 364 SER 364 365 365 SER SER A . n A 1 365 SER 365 366 366 SER SER A . n A 1 366 SER 366 367 367 SER SER A . n A 1 367 SER 367 368 368 SER SER A . n A 1 368 THR 368 369 369 THR THR A . n A 1 369 TYR 369 370 370 TYR TYR A . n A 1 370 SER 370 371 371 SER SER A . n A 1 371 SER 371 372 372 SER SER A . n A 1 372 ILE 372 373 373 ILE ILE A . n A 1 373 VAL 373 374 374 VAL VAL A . n A 1 374 SER 374 375 375 SER SER A . n A 1 375 ALA 375 376 376 ALA ALA A . n A 1 376 VAL 376 377 377 VAL VAL A . n A 1 377 LYS 377 378 378 LYS LYS A . n A 1 378 THR 378 379 379 THR THR A . n A 1 379 PHE 379 380 380 PHE PHE A . n A 1 380 ALA 380 381 381 ALA ALA A . n A 1 381 ASP 381 382 382 ASP ASP A . n A 1 382 GLY 382 383 383 GLY GLY A . n A 1 383 PHE 383 384 384 PHE PHE A . n A 1 384 VAL 384 385 385 VAL VAL A . n A 1 385 SER 385 386 386 SER SER A . n A 1 386 ILE 386 387 387 ILE ILE A . n A 1 387 VAL 387 388 388 VAL VAL A . n A 1 388 GLU 388 389 389 GLU GLU A . n A 1 389 THR 389 390 390 THR THR A . n A 1 390 HIS 390 391 391 HIS HIS A . n A 1 391 ALA 391 392 392 ALA ALA A . n A 1 392 ALA 392 393 393 ALA ALA A . n A 1 393 SER 393 394 394 SER SER A . n A 1 394 ASN 394 395 395 ASN ASN A . n A 1 395 GLY 395 396 396 GLY GLY A . n A 1 396 SER 396 397 397 SER SER A . n A 1 397 LEU 397 398 398 LEU LEU A . n A 1 398 SER 398 399 399 SER SER A . n A 1 399 GLU 399 400 400 GLU GLU A . n A 1 400 GLN 400 401 401 GLN GLN A . n A 1 401 PHE 401 402 402 PHE PHE A . n A 1 402 ASP 402 403 403 ASP ASP A . n A 1 403 LYS 403 404 404 LYS LYS A . n A 1 404 SER 404 405 405 SER SER A . n A 1 405 ASP 405 406 406 ASP ASP A . n A 1 406 GLY 406 407 407 GLY GLY A . n A 1 407 ASP 407 408 408 ASP ASP A . n A 1 408 GLU 408 409 409 GLU GLU A . n A 1 409 LEU 409 410 410 LEU LEU A . n A 1 410 SER 410 411 411 SER SER A . n A 1 411 ALA 411 412 412 ALA ALA A . n A 1 412 ARG 412 413 413 ARG ARG A . n A 1 413 ASP 413 414 414 ASP ASP A . n A 1 414 LEU 414 415 415 LEU LEU A . n A 1 415 THR 415 416 416 THR THR A . n A 1 416 TRP 416 417 417 TRP TRP A . n A 1 417 SER 417 418 418 SER SER A . n A 1 418 TYR 418 419 419 TYR TYR A . n A 1 419 ALA 419 420 420 ALA ALA A . n A 1 420 ALA 420 421 421 ALA ALA A . n A 1 421 LEU 421 422 422 LEU LEU A . n A 1 422 LEU 422 423 423 LEU LEU A . n A 1 423 THR 423 424 424 THR THR A . n A 1 424 ALA 424 425 425 ALA ALA A . n A 1 425 ASN 425 426 426 ASN ASN A . n A 1 426 ASN 426 427 427 ASN ASN A . n A 1 427 ARG 427 428 428 ARG ARG A . n A 1 428 ARG 428 429 429 ARG ARG A . n A 1 429 ASN 429 430 430 ASN ASN A . n A 1 430 SER 430 431 431 SER SER A . n A 1 431 VAL 431 432 432 VAL VAL A . n A 1 432 VAL 432 433 433 VAL VAL A . n A 1 433 PRO 433 434 434 PRO PRO A . n A 1 434 PRO 434 435 435 PRO PRO A . n A 1 435 SER 435 436 436 SER SER A . n A 1 436 TRP 436 437 437 TRP TRP A . n A 1 437 GLY 437 438 438 GLY GLY A . n A 1 438 GLU 438 439 439 GLU GLU A . n A 1 439 THR 439 440 440 THR THR A . n A 1 440 SER 440 441 441 SER SER A . n A 1 441 ALA 441 442 442 ALA ALA A . n A 1 442 SER 442 443 443 SER SER A . n A 1 443 SER 443 444 444 SER SER A . n A 1 444 VAL 444 445 445 VAL VAL A . n A 1 445 PRO 445 446 446 PRO PRO A . n A 1 446 GLY 446 447 447 GLY GLY A . n A 1 447 THR 447 448 448 THR THR A . n A 1 448 CYS 448 449 449 CYS CYS A . n A 1 449 ALA 449 450 450 ALA ALA A . n A 1 450 ALA 450 451 451 ALA ALA A . n A 1 451 THR 451 452 452 THR THR A . n A 1 452 SER 452 453 453 SER SER A . n A 1 453 ALA 453 454 454 ALA ALA A . n A 1 454 SER 454 455 455 SER SER A . n A 1 455 GLY 455 456 456 GLY GLY A . n A 1 456 THR 456 457 457 THR THR A . n A 1 457 TYR 457 458 458 TYR TYR A . n A 1 458 SER 458 459 459 SER SER A . n A 1 459 SER 459 460 460 SER SER A . n A 1 460 VAL 460 461 461 VAL VAL A . n A 1 461 THR 461 462 462 THR THR A . n A 1 462 VAL 462 463 463 VAL VAL A . n A 1 463 THR 463 464 464 THR THR A . n A 1 464 SER 464 465 465 SER SER A . n A 1 465 TRP 465 466 466 TRP TRP A . n A 1 466 PRO 466 467 467 PRO PRO A . n A 1 467 SER 467 468 468 SER SER A . n A 1 468 ILE 468 469 469 ILE ILE A . n A 1 469 VAL 469 470 470 VAL VAL A . n A 1 470 ALA 470 471 471 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MAN 1 485 443 MAN GLC A . E 4 MAN 1 486 444 MAN GLC A . F 4 MAN 1 487 452 MAN GLC A . G 4 MAN 1 488 453 MAN GLC A . H 4 MAN 1 489 455 MAN GLC A . I 4 MAN 1 490 457 MAN GLC A . J 4 MAN 1 491 459 MAN GLC A . K 4 MAN 1 492 460 MAN GLC A . L 4 MAN 1 493 462 MAN GLC A . M 4 MAN 1 494 464 MAN GLC A . N 5 NOJ 1 495 480 NOJ NOJ A . O 5 NOJ 1 496 481 NOJ NOJ A . P 6 HOH 1 501 501 HOH HOH A . P 6 HOH 2 502 502 HOH HOH A . P 6 HOH 3 503 503 HOH HOH A . P 6 HOH 4 504 504 HOH HOH A . P 6 HOH 5 505 505 HOH HOH A . P 6 HOH 6 506 506 HOH HOH A . P 6 HOH 7 507 507 HOH HOH A . P 6 HOH 8 508 508 HOH HOH A . P 6 HOH 9 509 509 HOH HOH A . P 6 HOH 10 510 510 HOH HOH A . P 6 HOH 11 511 511 HOH HOH A . P 6 HOH 12 512 512 HOH HOH A . P 6 HOH 13 513 513 HOH HOH A . P 6 HOH 14 514 514 HOH HOH A . P 6 HOH 15 515 515 HOH HOH A . P 6 HOH 16 516 516 HOH HOH A . P 6 HOH 17 517 517 HOH HOH A . P 6 HOH 18 518 518 HOH HOH A . P 6 HOH 19 519 519 HOH HOH A . P 6 HOH 20 520 520 HOH HOH A . P 6 HOH 21 521 521 HOH HOH A . P 6 HOH 22 522 522 HOH HOH A . P 6 HOH 23 523 523 HOH HOH A . P 6 HOH 24 524 524 HOH HOH A . P 6 HOH 25 525 525 HOH HOH A . P 6 HOH 26 526 526 HOH HOH A . P 6 HOH 27 527 527 HOH HOH A . P 6 HOH 28 528 528 HOH HOH A . P 6 HOH 29 529 529 HOH HOH A . P 6 HOH 30 530 530 HOH HOH A . P 6 HOH 31 531 531 HOH HOH A . P 6 HOH 32 532 532 HOH HOH A . P 6 HOH 33 533 533 HOH HOH A . P 6 HOH 34 534 534 HOH HOH A . P 6 HOH 35 535 535 HOH HOH A . P 6 HOH 36 536 536 HOH HOH A . P 6 HOH 37 537 537 HOH HOH A . P 6 HOH 38 538 538 HOH HOH A . P 6 HOH 39 539 539 HOH HOH A . P 6 HOH 40 540 540 HOH HOH A . P 6 HOH 41 541 541 HOH HOH A . P 6 HOH 42 542 542 HOH HOH A . P 6 HOH 43 543 543 HOH HOH A . P 6 HOH 44 544 544 HOH HOH A . P 6 HOH 45 545 545 HOH HOH A . P 6 HOH 46 546 546 HOH HOH A . P 6 HOH 47 547 547 HOH HOH A . P 6 HOH 48 548 548 HOH HOH A . P 6 HOH 49 549 549 HOH HOH A . P 6 HOH 50 550 550 HOH HOH A . P 6 HOH 51 551 551 HOH HOH A . P 6 HOH 52 552 552 HOH HOH A . P 6 HOH 53 553 553 HOH HOH A . P 6 HOH 54 554 554 HOH HOH A . P 6 HOH 55 555 555 HOH HOH A . P 6 HOH 56 556 556 HOH HOH A . P 6 HOH 57 557 557 HOH HOH A . P 6 HOH 58 558 558 HOH HOH A . P 6 HOH 59 559 559 HOH HOH A . P 6 HOH 60 560 560 HOH HOH A . P 6 HOH 61 561 561 HOH HOH A . P 6 HOH 62 562 562 HOH HOH A . P 6 HOH 63 563 563 HOH HOH A . P 6 HOH 64 564 564 HOH HOH A . P 6 HOH 65 565 565 HOH HOH A . P 6 HOH 66 566 566 HOH HOH A . P 6 HOH 67 567 567 HOH HOH A . P 6 HOH 68 568 568 HOH HOH A . P 6 HOH 69 569 569 HOH HOH A . P 6 HOH 70 570 570 HOH HOH A . P 6 HOH 71 571 571 HOH HOH A . P 6 HOH 72 572 572 HOH HOH A . P 6 HOH 73 573 573 HOH HOH A . P 6 HOH 74 574 574 HOH HOH A . P 6 HOH 75 575 575 HOH HOH A . P 6 HOH 76 576 576 HOH HOH A . P 6 HOH 77 577 577 HOH HOH A . P 6 HOH 78 578 578 HOH HOH A . P 6 HOH 79 579 579 HOH HOH A . P 6 HOH 80 580 580 HOH HOH A . P 6 HOH 81 581 581 HOH HOH A . P 6 HOH 82 582 582 HOH HOH A . P 6 HOH 83 583 583 HOH HOH A . P 6 HOH 84 584 584 HOH HOH A . P 6 HOH 85 585 585 HOH HOH A . P 6 HOH 86 586 586 HOH HOH A . P 6 HOH 87 587 587 HOH HOH A . P 6 HOH 88 588 588 HOH HOH A . P 6 HOH 89 589 589 HOH HOH A . P 6 HOH 90 590 590 HOH HOH A . P 6 HOH 91 591 591 HOH HOH A . P 6 HOH 92 592 592 HOH HOH A . P 6 HOH 93 593 593 HOH HOH A . P 6 HOH 94 594 594 HOH HOH A . P 6 HOH 95 595 595 HOH HOH A . P 6 HOH 96 596 596 HOH HOH A . P 6 HOH 97 597 597 HOH HOH A . P 6 HOH 98 598 598 HOH HOH A . P 6 HOH 99 599 599 HOH HOH A . P 6 HOH 100 600 600 HOH HOH A . P 6 HOH 101 601 601 HOH HOH A . P 6 HOH 102 602 602 HOH HOH A . P 6 HOH 103 603 603 HOH HOH A . P 6 HOH 104 604 604 HOH HOH A . P 6 HOH 105 605 605 HOH HOH A . P 6 HOH 106 606 606 HOH HOH A . P 6 HOH 107 607 607 HOH HOH A . P 6 HOH 108 608 608 HOH HOH A . P 6 HOH 109 609 609 HOH HOH A . P 6 HOH 110 610 610 HOH HOH A . P 6 HOH 111 611 611 HOH HOH A . P 6 HOH 112 612 612 HOH HOH A . P 6 HOH 113 613 613 HOH HOH A . P 6 HOH 114 614 614 HOH HOH A . P 6 HOH 115 615 615 HOH HOH A . P 6 HOH 116 616 616 HOH HOH A . P 6 HOH 117 617 617 HOH HOH A . P 6 HOH 118 618 618 HOH HOH A . P 6 HOH 119 619 619 HOH HOH A . P 6 HOH 120 620 620 HOH HOH A . P 6 HOH 121 621 621 HOH HOH A . P 6 HOH 122 622 622 HOH HOH A . P 6 HOH 123 623 623 HOH HOH A . P 6 HOH 124 624 624 HOH HOH A . P 6 HOH 125 625 625 HOH HOH A . P 6 HOH 126 626 626 HOH HOH A . P 6 HOH 127 627 627 HOH HOH A . P 6 HOH 128 628 628 HOH HOH A . P 6 HOH 129 629 629 HOH HOH A . P 6 HOH 130 630 630 HOH HOH A . P 6 HOH 131 631 631 HOH HOH A . P 6 HOH 132 632 632 HOH HOH A . P 6 HOH 133 633 633 HOH HOH A . P 6 HOH 134 634 634 HOH HOH A . P 6 HOH 135 635 635 HOH HOH A . P 6 HOH 136 636 636 HOH HOH A . P 6 HOH 137 637 637 HOH HOH A . P 6 HOH 138 638 638 HOH HOH A . P 6 HOH 139 639 639 HOH HOH A . P 6 HOH 140 640 640 HOH HOH A . P 6 HOH 141 641 641 HOH HOH A . P 6 HOH 142 642 642 HOH HOH A . P 6 HOH 143 643 643 HOH HOH A . P 6 HOH 144 644 644 HOH HOH A . P 6 HOH 145 645 645 HOH HOH A . P 6 HOH 146 646 646 HOH HOH A . P 6 HOH 147 647 647 HOH HOH A . P 6 HOH 148 648 648 HOH HOH A . P 6 HOH 149 649 649 HOH HOH A . P 6 HOH 150 650 650 HOH HOH A . P 6 HOH 151 651 651 HOH HOH A . P 6 HOH 152 652 652 HOH HOH A . P 6 HOH 153 653 653 HOH HOH A . P 6 HOH 154 654 654 HOH HOH A . P 6 HOH 155 655 655 HOH HOH A . P 6 HOH 156 656 656 HOH HOH A . P 6 HOH 157 657 657 HOH HOH A . P 6 HOH 158 658 658 HOH HOH A . P 6 HOH 159 659 659 HOH HOH A . P 6 HOH 160 660 660 HOH HOH A . P 6 HOH 161 661 661 HOH HOH A . P 6 HOH 162 662 662 HOH HOH A . P 6 HOH 163 663 663 HOH HOH A . P 6 HOH 164 664 664 HOH HOH A . P 6 HOH 165 666 666 HOH HOH A . P 6 HOH 166 667 667 HOH HOH A . P 6 HOH 167 668 668 HOH HOH A . P 6 HOH 168 669 669 HOH HOH A . P 6 HOH 169 670 670 HOH HOH A . P 6 HOH 170 671 671 HOH HOH A . P 6 HOH 171 672 672 HOH HOH A . P 6 HOH 172 673 673 HOH HOH A . P 6 HOH 173 674 674 HOH HOH A . P 6 HOH 174 675 675 HOH HOH A . P 6 HOH 175 676 676 HOH HOH A . P 6 HOH 176 677 677 HOH HOH A . P 6 HOH 177 678 678 HOH HOH A . P 6 HOH 178 679 679 HOH HOH A . P 6 HOH 179 680 680 HOH HOH A . P 6 HOH 180 681 681 HOH HOH A . P 6 HOH 181 682 682 HOH HOH A . P 6 HOH 182 683 683 HOH HOH A . P 6 HOH 183 684 684 HOH HOH A . P 6 HOH 184 685 685 HOH HOH A . P 6 HOH 185 686 686 HOH HOH A . P 6 HOH 186 687 687 HOH HOH A . P 6 HOH 187 688 688 HOH HOH A . P 6 HOH 188 689 689 HOH HOH A . P 6 HOH 189 690 690 HOH HOH A . P 6 HOH 190 691 691 HOH HOH A . P 6 HOH 191 692 692 HOH HOH A . P 6 HOH 192 693 693 HOH HOH A . P 6 HOH 193 694 694 HOH HOH A . P 6 HOH 194 695 695 HOH HOH A . P 6 HOH 195 696 696 HOH HOH A . P 6 HOH 196 697 697 HOH HOH A . P 6 HOH 197 698 698 HOH HOH A . P 6 HOH 198 699 699 HOH HOH A . P 6 HOH 199 700 700 HOH HOH A . P 6 HOH 200 701 701 HOH HOH A . P 6 HOH 201 702 702 HOH HOH A . P 6 HOH 202 703 703 HOH HOH A . P 6 HOH 203 704 704 HOH HOH A . P 6 HOH 204 705 705 HOH HOH A . P 6 HOH 205 706 706 HOH HOH A . P 6 HOH 206 707 707 HOH HOH A . P 6 HOH 207 708 708 HOH HOH A . P 6 HOH 208 709 709 HOH HOH A . P 6 HOH 209 710 710 HOH HOH A . P 6 HOH 210 711 711 HOH HOH A . P 6 HOH 211 712 712 HOH HOH A . P 6 HOH 212 713 713 HOH HOH A . P 6 HOH 213 714 714 HOH HOH A . P 6 HOH 214 715 715 HOH HOH A . P 6 HOH 215 716 716 HOH HOH A . P 6 HOH 216 717 717 HOH HOH A . P 6 HOH 217 718 718 HOH HOH A . P 6 HOH 218 719 719 HOH HOH A . P 6 HOH 219 720 720 HOH HOH A . P 6 HOH 220 721 721 HOH HOH A . P 6 HOH 221 722 722 HOH HOH A . P 6 HOH 222 723 723 HOH HOH A . P 6 HOH 223 724 724 HOH HOH A . P 6 HOH 224 725 725 HOH HOH A . P 6 HOH 225 726 726 HOH HOH A . P 6 HOH 226 727 727 HOH HOH A . P 6 HOH 227 728 728 HOH HOH A . P 6 HOH 228 729 729 HOH HOH A . P 6 HOH 229 730 730 HOH HOH A . P 6 HOH 230 731 731 HOH HOH A . P 6 HOH 231 732 732 HOH HOH A . P 6 HOH 232 733 733 HOH HOH A . P 6 HOH 233 734 734 HOH HOH A . P 6 HOH 234 735 735 HOH HOH A . P 6 HOH 235 736 736 HOH HOH A . P 6 HOH 236 737 737 HOH HOH A . P 6 HOH 237 738 738 HOH HOH A . P 6 HOH 238 739 739 HOH HOH A . P 6 HOH 239 740 740 HOH HOH A . P 6 HOH 240 741 741 HOH HOH A . P 6 HOH 241 742 742 HOH HOH A . P 6 HOH 242 743 743 HOH HOH A . P 6 HOH 243 744 744 HOH HOH A . P 6 HOH 244 745 745 HOH HOH A . P 6 HOH 245 746 746 HOH HOH A . P 6 HOH 246 747 747 HOH HOH A . P 6 HOH 247 748 748 HOH HOH A . P 6 HOH 248 749 749 HOH HOH A . P 6 HOH 249 750 750 HOH HOH A . P 6 HOH 250 751 751 HOH HOH A . P 6 HOH 251 752 752 HOH HOH A . P 6 HOH 252 753 753 HOH HOH A . P 6 HOH 253 754 754 HOH HOH A . P 6 HOH 254 755 755 HOH HOH A . P 6 HOH 255 756 756 HOH HOH A . P 6 HOH 256 757 757 HOH HOH A . P 6 HOH 257 758 758 HOH HOH A . P 6 HOH 258 759 759 HOH HOH A . P 6 HOH 259 760 760 HOH HOH A . P 6 HOH 260 761 761 HOH HOH A . P 6 HOH 261 762 762 HOH HOH A . P 6 HOH 262 763 763 HOH HOH A . P 6 HOH 263 764 764 HOH HOH A . P 6 HOH 264 765 765 HOH HOH A . P 6 HOH 265 766 766 HOH HOH A . P 6 HOH 266 767 767 HOH HOH A . P 6 HOH 267 768 768 HOH HOH A . P 6 HOH 268 769 769 HOH HOH A . P 6 HOH 269 770 770 HOH HOH A . P 6 HOH 270 771 771 HOH HOH A . P 6 HOH 271 772 772 HOH HOH A . P 6 HOH 272 773 773 HOH HOH A . P 6 HOH 273 774 774 HOH HOH A . P 6 HOH 274 775 775 HOH HOH A . P 6 HOH 275 776 776 HOH HOH A . P 6 HOH 276 777 777 HOH HOH A . P 6 HOH 277 778 778 HOH HOH A . P 6 HOH 278 779 779 HOH HOH A . P 6 HOH 279 780 780 HOH HOH A . P 6 HOH 280 781 781 HOH HOH A . P 6 HOH 281 782 782 HOH HOH A . P 6 HOH 282 783 783 HOH HOH A . P 6 HOH 283 784 784 HOH HOH A . P 6 HOH 284 785 785 HOH HOH A . P 6 HOH 285 786 786 HOH HOH A . P 6 HOH 286 787 787 HOH HOH A . P 6 HOH 287 788 788 HOH HOH A . P 6 HOH 288 789 789 HOH HOH A . P 6 HOH 289 790 790 HOH HOH A . P 6 HOH 290 791 791 HOH HOH A . P 6 HOH 291 792 792 HOH HOH A . P 6 HOH 292 793 793 HOH HOH A . P 6 HOH 293 794 794 HOH HOH A . P 6 HOH 294 795 795 HOH HOH A . P 6 HOH 295 796 796 HOH HOH A . P 6 HOH 296 797 797 HOH HOH A . P 6 HOH 297 798 798 HOH HOH A . P 6 HOH 298 799 799 HOH HOH A . P 6 HOH 299 800 800 HOH HOH A . P 6 HOH 300 801 801 HOH HOH A . P 6 HOH 301 802 802 HOH HOH A . P 6 HOH 302 803 803 HOH HOH A . P 6 HOH 303 804 804 HOH HOH A . P 6 HOH 304 805 805 HOH HOH A . P 6 HOH 305 806 806 HOH HOH A . P 6 HOH 306 807 807 HOH HOH A . P 6 HOH 307 808 808 HOH HOH A . P 6 HOH 308 809 809 HOH HOH A . P 6 HOH 309 810 810 HOH HOH A . P 6 HOH 310 811 811 HOH HOH A . P 6 HOH 311 812 812 HOH HOH A . P 6 HOH 312 813 813 HOH HOH A . P 6 HOH 313 814 814 HOH HOH A . P 6 HOH 314 815 815 HOH HOH A . P 6 HOH 315 816 816 HOH HOH A . P 6 HOH 316 817 817 HOH HOH A . P 6 HOH 317 818 818 HOH HOH A . P 6 HOH 318 819 819 HOH HOH A . P 6 HOH 319 820 820 HOH HOH A . P 6 HOH 320 821 821 HOH HOH A . P 6 HOH 321 822 822 HOH HOH A . P 6 HOH 322 823 823 HOH HOH A . P 6 HOH 323 824 824 HOH HOH A . P 6 HOH 324 825 825 HOH HOH A . P 6 HOH 325 826 826 HOH HOH A . P 6 HOH 326 827 827 HOH HOH A . P 6 HOH 327 828 828 HOH HOH A . P 6 HOH 328 829 829 HOH HOH A . P 6 HOH 329 830 830 HOH HOH A . P 6 HOH 330 831 831 HOH HOH A . P 6 HOH 331 832 832 HOH HOH A . P 6 HOH 332 833 833 HOH HOH A . P 6 HOH 333 834 834 HOH HOH A . P 6 HOH 334 835 835 HOH HOH A . P 6 HOH 335 836 836 HOH HOH A . P 6 HOH 336 837 837 HOH HOH A . P 6 HOH 337 838 838 HOH HOH A . P 6 HOH 338 839 839 HOH HOH A . P 6 HOH 339 840 840 HOH HOH A . P 6 HOH 340 841 841 HOH HOH A . P 6 HOH 341 842 842 HOH HOH A . P 6 HOH 342 843 843 HOH HOH A . P 6 HOH 343 844 844 HOH HOH A . P 6 HOH 344 845 845 HOH HOH A . P 6 HOH 345 846 846 HOH HOH A . P 6 HOH 346 847 847 HOH HOH A . P 6 HOH 347 848 848 HOH HOH A . P 6 HOH 348 849 849 HOH HOH A . P 6 HOH 349 850 850 HOH HOH A . P 6 HOH 350 851 851 HOH HOH A . P 6 HOH 351 852 852 HOH HOH A . P 6 HOH 352 853 853 HOH HOH A . P 6 HOH 353 854 854 HOH HOH A . P 6 HOH 354 855 855 HOH HOH A . P 6 HOH 355 856 856 HOH HOH A . P 6 HOH 356 857 857 HOH HOH A . P 6 HOH 357 858 858 HOH HOH A . P 6 HOH 358 859 859 HOH HOH A . P 6 HOH 359 860 860 HOH HOH A . P 6 HOH 360 861 861 HOH HOH A . P 6 HOH 361 862 862 HOH HOH A . P 6 HOH 362 863 863 HOH HOH A . P 6 HOH 363 864 864 HOH HOH A . P 6 HOH 364 865 865 HOH HOH A . P 6 HOH 365 866 866 HOH HOH A . P 6 HOH 366 867 867 HOH HOH A . P 6 HOH 367 868 868 HOH HOH A . P 6 HOH 368 869 869 HOH HOH A . P 6 HOH 369 870 870 HOH HOH A . P 6 HOH 370 871 871 HOH HOH A . P 6 HOH 371 872 872 HOH HOH A . P 6 HOH 372 873 873 HOH HOH A . P 6 HOH 373 874 874 HOH HOH A . P 6 HOH 374 875 875 HOH HOH A . P 6 HOH 375 876 876 HOH HOH A . P 6 HOH 376 877 877 HOH HOH A . P 6 HOH 377 878 878 HOH HOH A . P 6 HOH 378 879 879 HOH HOH A . P 6 HOH 379 880 880 HOH HOH A . P 6 HOH 380 881 881 HOH HOH A . P 6 HOH 381 882 882 HOH HOH A . P 6 HOH 382 883 883 HOH HOH A . P 6 HOH 383 884 884 HOH HOH A . P 6 HOH 384 885 885 HOH HOH A . P 6 HOH 385 886 886 HOH HOH A . P 6 HOH 386 887 887 HOH HOH A . P 6 HOH 387 888 888 HOH HOH A . P 6 HOH 388 889 889 HOH HOH A . P 6 HOH 389 890 890 HOH HOH A . P 6 HOH 390 891 891 HOH HOH A . P 6 HOH 391 892 892 HOH HOH A . P 6 HOH 392 893 893 HOH HOH A . P 6 HOH 393 894 894 HOH HOH A . P 6 HOH 394 895 895 HOH HOH A . P 6 HOH 395 896 896 HOH HOH A . P 6 HOH 396 897 897 HOH HOH A . P 6 HOH 397 898 898 HOH HOH A . P 6 HOH 398 899 899 HOH HOH A . P 6 HOH 399 900 900 HOH HOH A . P 6 HOH 400 901 901 HOH HOH A . P 6 HOH 401 902 902 HOH HOH A . P 6 HOH 402 903 903 HOH HOH A . P 6 HOH 403 904 904 HOH HOH A . P 6 HOH 404 905 905 HOH HOH A . P 6 HOH 405 906 906 HOH HOH A . P 6 HOH 406 907 907 HOH HOH A . P 6 HOH 407 908 908 HOH HOH A . P 6 HOH 408 909 909 HOH HOH A . P 6 HOH 409 910 910 HOH HOH A . P 6 HOH 410 911 911 HOH HOH A . P 6 HOH 411 912 912 HOH HOH A . P 6 HOH 412 913 913 HOH HOH A . P 6 HOH 413 914 914 HOH HOH A . P 6 HOH 414 915 915 HOH HOH A . P 6 HOH 415 916 916 HOH HOH A . P 6 HOH 416 917 917 HOH HOH A . P 6 HOH 417 918 918 HOH HOH A . P 6 HOH 418 919 919 HOH HOH A . P 6 HOH 419 920 920 HOH HOH A . P 6 HOH 420 921 921 HOH HOH A . P 6 HOH 421 922 922 HOH HOH A . P 6 HOH 422 923 923 HOH HOH A . P 6 HOH 423 924 924 HOH HOH A . P 6 HOH 424 925 925 HOH HOH A . P 6 HOH 425 926 926 HOH HOH A . P 6 HOH 426 927 927 HOH HOH A . P 6 HOH 427 928 928 HOH HOH A . P 6 HOH 428 929 929 HOH HOH A . P 6 HOH 429 930 930 HOH HOH A . P 6 HOH 430 931 931 HOH HOH A . P 6 HOH 431 932 932 HOH HOH A . P 6 HOH 432 933 933 HOH HOH A . P 6 HOH 433 934 934 HOH HOH A . P 6 HOH 434 935 935 HOH HOH A . P 6 HOH 435 936 936 HOH HOH A . P 6 HOH 436 937 937 HOH HOH A . P 6 HOH 437 938 938 HOH HOH A . P 6 HOH 438 939 939 HOH HOH A . P 6 HOH 439 940 940 HOH HOH A . P 6 HOH 440 941 941 HOH HOH A . P 6 HOH 441 942 942 HOH HOH A . P 6 HOH 442 943 943 HOH HOH A . P 6 HOH 443 944 944 HOH HOH A . P 6 HOH 444 945 945 HOH HOH A . P 6 HOH 445 946 946 HOH HOH A . P 6 HOH 446 947 947 HOH HOH A . P 6 HOH 447 948 948 HOH HOH A . P 6 HOH 448 949 949 HOH HOH A . P 6 HOH 449 950 950 HOH HOH A . P 6 HOH 450 951 951 HOH HOH A . P 6 HOH 451 952 952 HOH HOH A . P 6 HOH 452 953 953 HOH HOH A . P 6 HOH 453 954 954 HOH HOH A . P 6 HOH 454 955 955 HOH HOH A . P 6 HOH 455 956 956 HOH HOH A . P 6 HOH 456 957 957 HOH HOH A . P 6 HOH 457 958 958 HOH HOH A . P 6 HOH 458 959 959 HOH HOH A . P 6 HOH 459 960 960 HOH HOH A . P 6 HOH 460 961 961 HOH HOH A . P 6 HOH 461 962 962 HOH HOH A . P 6 HOH 462 963 963 HOH HOH A . P 6 HOH 463 964 964 HOH HOH A . P 6 HOH 464 965 965 HOH HOH A . P 6 HOH 465 966 966 HOH HOH A . P 6 HOH 466 967 967 HOH HOH A . P 6 HOH 467 968 968 HOH HOH A . P 6 HOH 468 969 969 HOH HOH A . P 6 HOH 469 970 970 HOH HOH A . P 6 HOH 470 971 971 HOH HOH A . P 6 HOH 471 972 972 HOH HOH A . P 6 HOH 472 973 973 HOH HOH A . P 6 HOH 473 974 974 HOH HOH A . P 6 HOH 474 975 975 HOH HOH A . P 6 HOH 475 976 976 HOH HOH A . P 6 HOH 476 977 977 HOH HOH A . P 6 HOH 477 978 978 HOH HOH A . P 6 HOH 478 979 979 HOH HOH A . P 6 HOH 479 980 980 HOH HOH A . P 6 HOH 480 981 981 HOH HOH A . P 6 HOH 481 982 982 HOH HOH A . P 6 HOH 482 983 983 HOH HOH A . P 6 HOH 483 984 984 HOH HOH A . P 6 HOH 484 985 985 HOH HOH A . P 6 HOH 485 986 986 HOH HOH A . P 6 HOH 486 987 987 HOH HOH A . P 6 HOH 487 988 988 HOH HOH A . P 6 HOH 488 989 989 HOH HOH A . P 6 HOH 489 990 990 HOH HOH A . P 6 HOH 490 991 991 HOH HOH A . P 6 HOH 491 992 992 HOH HOH A . P 6 HOH 492 993 993 HOH HOH A . P 6 HOH 493 994 994 HOH HOH A . P 6 HOH 494 995 995 HOH HOH A . P 6 HOH 495 996 996 HOH HOH A . P 6 HOH 496 997 997 HOH HOH A . P 6 HOH 497 998 998 HOH HOH A . P 6 HOH 498 999 999 HOH HOH A . P 6 HOH 499 1000 1000 HOH HOH A . P 6 HOH 500 1001 1001 HOH HOH A . P 6 HOH 501 1002 1002 HOH HOH A . P 6 HOH 502 1003 1003 HOH HOH A . P 6 HOH 503 1004 1004 HOH HOH A . P 6 HOH 504 1005 1005 HOH HOH A . P 6 HOH 505 1006 1006 HOH HOH A . P 6 HOH 506 1007 1007 HOH HOH A . P 6 HOH 507 1008 1008 HOH HOH A . P 6 HOH 508 1009 1009 HOH HOH A . P 6 HOH 509 1010 1010 HOH HOH A . P 6 HOH 510 1011 1011 HOH HOH A . P 6 HOH 511 1012 1012 HOH HOH A . P 6 HOH 512 1013 1013 HOH HOH A . P 6 HOH 513 1014 1014 HOH HOH A . P 6 HOH 514 1015 1015 HOH HOH A . P 6 HOH 515 1016 1016 HOH HOH A . P 6 HOH 516 1017 1017 HOH HOH A . P 6 HOH 517 1018 1018 HOH HOH A . P 6 HOH 518 1019 1019 HOH HOH A . P 6 HOH 519 1020 1020 HOH HOH A . P 6 HOH 520 1021 1021 HOH HOH A . P 6 HOH 521 1022 1022 HOH HOH A . P 6 HOH 522 1023 1023 HOH HOH A . P 6 HOH 523 1024 1024 HOH HOH A . P 6 HOH 524 1025 1025 HOH HOH A . P 6 HOH 525 1026 1026 HOH HOH A . P 6 HOH 526 1027 1027 HOH HOH A . P 6 HOH 527 1028 1028 HOH HOH A . P 6 HOH 528 1029 1029 HOH HOH A . P 6 HOH 529 1030 1030 HOH HOH A . P 6 HOH 530 1031 1031 HOH HOH A . P 6 HOH 531 1032 1032 HOH HOH A . P 6 HOH 532 1033 1033 HOH HOH A . P 6 HOH 533 1034 1034 HOH HOH A . P 6 HOH 534 1035 1035 HOH HOH A . P 6 HOH 535 1036 1036 HOH HOH A . P 6 HOH 536 1037 1037 HOH HOH A . P 6 HOH 537 1038 1038 HOH HOH A . P 6 HOH 538 1039 1039 HOH HOH A . P 6 HOH 539 1040 1040 HOH HOH A . P 6 HOH 540 1041 1041 HOH HOH A . P 6 HOH 541 1042 1042 HOH HOH A . P 6 HOH 542 1043 1043 HOH HOH A . P 6 HOH 543 1044 1044 HOH HOH A . P 6 HOH 544 1045 1045 HOH HOH A . P 6 HOH 545 1046 1046 HOH HOH A . P 6 HOH 546 1047 1047 HOH HOH A . P 6 HOH 547 1048 1048 HOH HOH A . P 6 HOH 548 1049 1049 HOH HOH A . P 6 HOH 549 1050 1050 HOH HOH A . P 6 HOH 550 1051 1051 HOH HOH A . P 6 HOH 551 1052 1052 HOH HOH A . P 6 HOH 552 1053 1053 HOH HOH A . P 6 HOH 553 1054 1054 HOH HOH A . P 6 HOH 554 1055 1055 HOH HOH A . P 6 HOH 555 1056 1056 HOH HOH A . P 6 HOH 556 1057 1057 HOH HOH A . P 6 HOH 557 1058 1058 HOH HOH A . P 6 HOH 558 1059 1059 HOH HOH A . P 6 HOH 559 1060 1060 HOH HOH A . P 6 HOH 560 1061 1061 HOH HOH A . P 6 HOH 561 1062 1062 HOH HOH A . P 6 HOH 562 1063 1063 HOH HOH A . P 6 HOH 563 1064 1064 HOH HOH A . P 6 HOH 564 1065 1065 HOH HOH A . P 6 HOH 565 1066 1066 HOH HOH A . P 6 HOH 566 1067 1067 HOH HOH A . P 6 HOH 567 1068 1068 HOH HOH A . P 6 HOH 568 1069 1069 HOH HOH A . P 6 HOH 569 1070 1070 HOH HOH A . P 6 HOH 570 1071 1071 HOH HOH A . P 6 HOH 571 1072 1072 HOH HOH A . P 6 HOH 572 1073 1073 HOH HOH A . P 6 HOH 573 1074 1074 HOH HOH A . P 6 HOH 574 1075 1075 HOH HOH A . P 6 HOH 575 1076 1076 HOH HOH A . P 6 HOH 576 1077 1077 HOH HOH A . P 6 HOH 577 1078 1078 HOH HOH A . P 6 HOH 578 1079 1079 HOH HOH A . P 6 HOH 579 1080 1080 HOH HOH A . P 6 HOH 580 1081 1081 HOH HOH A . P 6 HOH 581 1082 1082 HOH HOH A . P 6 HOH 582 1083 1083 HOH HOH A . P 6 HOH 583 1084 1084 HOH HOH A . P 6 HOH 584 1085 1085 HOH HOH A . P 6 HOH 585 1086 1086 HOH HOH A . P 6 HOH 586 1087 1087 HOH HOH A . P 6 HOH 587 1088 1088 HOH HOH A . P 6 HOH 588 1089 1089 HOH HOH A . P 6 HOH 589 1090 1090 HOH HOH A . P 6 HOH 590 1091 1091 HOH HOH A . P 6 HOH 591 1092 1092 HOH HOH A . P 6 HOH 592 1093 1093 HOH HOH A . P 6 HOH 593 1094 1094 HOH HOH A . P 6 HOH 594 1095 1095 HOH HOH A . P 6 HOH 595 1096 1096 HOH HOH A . P 6 HOH 596 1097 1097 HOH HOH A . P 6 HOH 597 1098 1098 HOH HOH A . P 6 HOH 598 1099 1099 HOH HOH A . P 6 HOH 599 1100 1100 HOH HOH A . P 6 HOH 600 1101 1101 HOH HOH A . P 6 HOH 601 1102 1102 HOH HOH A . P 6 HOH 602 1103 1103 HOH HOH A . P 6 HOH 603 1200 1200 HOH HOH A . P 6 HOH 604 1201 1201 HOH HOH A . P 6 HOH 605 1202 1202 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 170 A ASN 171 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 394 A ASN 395 ? ASN 'GLYCOSYLATION SITE' 3 A SER 442 A SER 443 ? SER 'GLYCOSYLATION SITE' 4 A SER 443 A SER 444 ? SER 'GLYCOSYLATION SITE' 5 A THR 451 A THR 452 ? THR 'GLYCOSYLATION SITE' 6 A SER 452 A SER 453 ? SER 'GLYCOSYLATION SITE' 7 A SER 454 A SER 455 ? SER 'GLYCOSYLATION SITE' 8 A THR 456 A THR 457 ? THR 'GLYCOSYLATION SITE' 9 A SER 458 A SER 459 ? SER 'GLYCOSYLATION SITE' 10 A SER 459 A SER 460 ? SER 'GLYCOSYLATION SITE' 11 A THR 461 A THR 462 ? THR 'GLYCOSYLATION SITE' 12 A THR 463 A THR 464 ? THR 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 4 'Structure model' struct_conf 3 4 'Structure model' struct_conf_type 4 5 'Structure model' atom_site 5 5 'Structure model' chem_comp 6 5 'Structure model' entity 7 5 'Structure model' pdbx_branch_scheme 8 5 'Structure model' pdbx_chem_comp_identifier 9 5 'Structure model' pdbx_entity_branch 10 5 'Structure model' pdbx_entity_branch_descriptor 11 5 'Structure model' pdbx_entity_branch_link 12 5 'Structure model' pdbx_entity_branch_list 13 5 'Structure model' pdbx_entity_nonpoly 14 5 'Structure model' pdbx_nonpoly_scheme 15 5 'Structure model' pdbx_struct_assembly_gen 16 5 'Structure model' struct_asym 17 5 'Structure model' struct_conn 18 5 'Structure model' struct_ref_seq_dif 19 5 'Structure model' struct_site 20 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.process_site' 2 5 'Structure model' '_atom_site.B_iso_or_equiv' 3 5 'Structure model' '_atom_site.Cartn_x' 4 5 'Structure model' '_atom_site.Cartn_y' 5 5 'Structure model' '_atom_site.Cartn_z' 6 5 'Structure model' '_atom_site.auth_asym_id' 7 5 'Structure model' '_atom_site.auth_seq_id' 8 5 'Structure model' '_atom_site.label_asym_id' 9 5 'Structure model' '_atom_site.label_entity_id' 10 5 'Structure model' '_atom_site.pdbx_PDB_ins_code' 11 5 'Structure model' '_chem_comp.name' 12 5 'Structure model' '_chem_comp.type' 13 5 'Structure model' '_entity.formula_weight' 14 5 'Structure model' '_entity.pdbx_description' 15 5 'Structure model' '_entity.pdbx_number_of_molecules' 16 5 'Structure model' '_entity.type' 17 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 5 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 20 5 'Structure model' '_struct_conn.pdbx_ptnr2_PDB_ins_code' 21 5 'Structure model' '_struct_conn.pdbx_role' 22 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 5 'Structure model' '_struct_ref_seq_dif.details' # _software.name PROLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 1DOG _pdbx_entry_details.compound_details ;ACTIVE SITE: (SEE TABLE II OF MANUSCRIPT AND THE DISCUSSION CONCERNING THE CATALYTIC MECHANISM) RESIDUES THAT BIND TO 1-DEOXYNOJIRIMYCIN AT ITS PRINCIPAL SITE ARE ASP 55 OD1, ASP 55 OD2, ARG 305 NH1, CARBONYL 177, ARG 54 NE, AND ARG 54 NH2. GLU 179 IS THE CATALYTIC ACID AND RESIDUE GLU 400 IS THE CATALYTIC BASE. WATER 1201 IS THE NUCLEOPHILE. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THERE ARE SOME CLOSE CONTACTS BETWEEN WATERS AND THE DEOXYNOJIRIMYCIN MOLECULE WHICH ARE THE RESULT OF THE CO-REFINEMENT OF AN INHIBITOR MOLECULE AT LESS THAN FULL OCCUPANCY ALONG WITH SOLVENT MOLECULES WHICH ARE PRESENT IN THE ABSENCE OF THE INHIBITOR. THE PAPER CITED ON JRNL RECORDS ABOVE DISCUSSES THIS BRIEFLY IN THE METHODS SECTION. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 THR _pdbx_validate_rmsd_bond.auth_seq_id_1 246 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ASN _pdbx_validate_rmsd_bond.auth_seq_id_2 247 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.160 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation -0.176 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 68 ? ? CZ A ARG 68 ? ? NH1 A ARG 68 ? ? 123.36 120.30 3.06 0.50 N 2 1 NE A ARG 68 ? ? CZ A ARG 68 ? ? NH2 A ARG 68 ? ? 116.94 120.30 -3.36 0.50 N 3 1 NE A ARG 122 ? ? CZ A ARG 122 ? ? NH2 A ARG 122 ? ? 125.33 120.30 5.03 0.50 N 4 1 CD A ARG 160 ? ? NE A ARG 160 ? ? CZ A ARG 160 ? ? 132.52 123.60 8.92 1.40 N 5 1 NE A ARG 160 ? ? CZ A ARG 160 ? ? NH1 A ARG 160 ? ? 124.49 120.30 4.19 0.50 N 6 1 NE A ARG 160 ? ? CZ A ARG 160 ? ? NH2 A ARG 160 ? ? 116.84 120.30 -3.46 0.50 N 7 1 NE A ARG 194 ? ? CZ A ARG 194 ? ? NH2 A ARG 194 ? ? 116.17 120.30 -4.13 0.50 N 8 1 O A THR 246 ? B C A THR 246 ? B N A ASN 247 ? ? 107.75 122.70 -14.95 1.60 Y 9 1 NE A ARG 273 ? ? CZ A ARG 273 ? ? NH1 A ARG 273 ? ? 129.24 120.30 8.94 0.50 N 10 1 NE A ARG 273 ? ? CZ A ARG 273 ? ? NH2 A ARG 273 ? ? 112.14 120.30 -8.16 0.50 N 11 1 NE A ARG 286 ? ? CZ A ARG 286 ? ? NH1 A ARG 286 ? ? 124.20 120.30 3.90 0.50 N 12 1 CB A TYR 289 ? ? CG A TYR 289 ? ? CD1 A TYR 289 ? ? 124.77 121.00 3.77 0.60 N 13 1 CA A LEU 341 ? ? CB A LEU 341 ? ? CG A LEU 341 ? ? 135.04 115.30 19.74 2.30 N 14 1 CB A ASP 406 ? ? CG A ASP 406 ? ? OD1 A ASP 406 ? ? 124.30 118.30 6.00 0.90 N 15 1 NE A ARG 413 ? ? CZ A ARG 413 ? ? NH1 A ARG 413 ? ? 123.87 120.30 3.57 0.50 N 16 1 NE A ARG 428 ? ? CZ A ARG 428 ? ? NH1 A ARG 428 ? ? 125.22 120.30 4.92 0.50 N 17 1 NE A ARG 428 ? ? CZ A ARG 428 ? ? NH2 A ARG 428 ? ? 117.09 120.30 -3.21 0.50 N 18 1 NE A ARG 429 ? ? CZ A ARG 429 ? ? NH1 A ARG 429 ? ? 124.69 120.30 4.39 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 45 ? ? 40.29 72.86 2 1 GLU A 113 ? ? 84.49 15.31 3 1 TYR A 147 ? ? -110.10 52.33 4 1 ILE A 154 ? ? -105.17 -64.93 5 1 ASN A 171 ? ? -77.55 23.71 6 1 SER A 208 ? ? -119.37 -158.72 7 1 ASP A 238 ? ? 89.63 33.45 8 1 THR A 246 ? B -61.28 6.61 9 1 TYR A 312 ? ? 57.06 19.68 10 1 ASN A 313 ? ? 99.17 -6.22 11 1 SER A 411 ? ? 66.80 -152.95 12 1 ASP A 414 ? ? 39.22 57.43 13 1 ALA A 442 ? ? -145.64 47.38 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id THR _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 246 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id B _pdbx_validate_main_chain_plane.improper_torsion_angle -12.37 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ASP A 44 ? ? 0.077 'SIDE CHAIN' 2 1 ARG A 428 ? ? 0.118 'SIDE CHAIN' # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 THR _pdbx_validate_polymer_linkage.auth_seq_id_1 246 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 B _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 ASN _pdbx_validate_polymer_linkage.auth_seq_id_2 247 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.16 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? AS1 171 n B 2 NAG 2 B NAG 2 ? AS1 171 n B 2 BMA 3 B BMA 3 ? AS1 171 n B 2 MAN 4 B MAN 4 ? AS1 171 n B 2 MAN 5 B MAN 5 ? AS1 171 n C 3 NAG 1 C NAG 1 ? AS2 395 n C 3 NAG 2 C NAG 2 ? AS2 395 n C 3 BMA 3 C BMA 3 ? AS2 395 n C 3 MAN 4 C MAN 4 ? AS2 395 n C 3 MAN 5 C MAN 5 ? AS2 395 n C 3 MAN 6 C MAN 6 ? AS2 395 n C 3 MAN 7 C MAN 7 ? AS2 395 n C 3 MAN 8 C MAN 8 ? AS2 395 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-2DManpa1-3DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_d2-e1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][a-D-Manp]{}}}}}}' LINUCS PDB-CARE ? 4 3 'DManpa1-2DManpa1-2DManpa1-3[DManpa1-3DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/3,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3-3-3-3/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e2-f1_g3-h1' WURCS PDB2Glycan 1.1.0 6 3 ;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][a-D-Manp]{[(2+1)][a-D-Manp]{}}}[(6+1)][a-D-Manp]{[(3+1)][a-D-Manp]{}}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 MAN C1 O1 4 MAN O2 HO2 sing ? 5 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 6 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 7 3 4 MAN C1 O1 3 BMA O3 HO3 sing ? 8 3 5 MAN C1 O1 4 MAN O2 HO2 sing ? 9 3 6 MAN C1 O1 5 MAN O2 HO2 sing ? 10 3 7 MAN C1 O1 3 BMA O6 HO6 sing ? 11 3 8 MAN C1 O1 7 MAN O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 MAN 5 n 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 3 MAN 4 n 3 MAN 5 n 3 MAN 6 n 3 MAN 7 n 3 MAN 8 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 alpha-D-mannopyranose MAN 5 1-DEOXYNOJIRIMYCIN NOJ 6 water HOH #