HEADER TRANSCRIPTION/DNA 10-JAN-00 1DSZ TITLE STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX TITLE 2 WITH THE RETINOIC ACID RESPONSE ELEMENT DR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)- COMPND 3 3'); COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*G)- COMPND 8 3'); COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RETINOIC ACID RECEPTOR ALPHA; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: RESIDUES 82-167; COMPND 15 SYNONYM: RAR-ALPHA; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 19 CHAIN: B; COMPND 20 FRAGMENT: RESIDUES 129-212; COMPND 21 SYNONYM: RXR-ALPHA; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS RXR, RAR, NUCLEAR RECEPTOR, PROTEIN-DNA, RETINOIC ACID, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.RASTINEJAD,T.WAGNER,Q.ZHAO,S.KHORASANIZADEH REVDAT 3 07-FEB-24 1DSZ 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1DSZ 1 VERSN REVDAT 1 10-JUL-00 1DSZ 0 JRNL AUTH F.RASTINEJAD,T.WAGNER,Q.ZHAO,S.KHORASANIZADEH JRNL TITL STRUCTURE OF THE RXR-RAR DNA-BINDING COMPLEX ON THE RETINOIC JRNL TITL 2 ACID RESPONSE ELEMENT DR1. JRNL REF EMBO J. V. 19 1045 2000 JRNL REFN ISSN 0261-4189 JRNL PMID 10698945 JRNL DOI 10.1093/EMBOJ/19.5.1045 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : X-PLOR REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1416 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1242 REMARK 3 NUCLEIC ACID ATOMS : 609 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000010339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-95 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-23% PEG 3350, 25 MM TRIS BUFFER, 5 REMARK 280 MM MGCL2, 0.4 M NH4CL, RXR AND RAR PROTEINS EACH AT 0.45 MM, DNA REMARK 280 DUPLEX AT 0.45 MM, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.93000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.93000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 16.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1129 REMARK 465 ARG A 1130 REMARK 465 ILE A 1131 REMARK 465 TYR A 1132 REMARK 465 LYS A 1133 REMARK 465 ARG A 1209 REMARK 465 ASN A 1210 REMARK 465 LYS A 1211 REMARK 465 LYS A 1212 REMARK 465 LYS A 1213 REMARK 465 LYS A 1214 REMARK 465 GLY B 1312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1141 CG CD CE NZ REMARK 470 VAL A1168 CG1 CG2 REMARK 470 HIS A1172 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A1173 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1186 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1197 CG CD OE1 OE2 REMARK 470 ASP A1208 CG OD1 OD2 REMARK 470 ARG B1272 CG CD NE CZ NH1 NH2 REMARK 470 ASP B1273 CG OD1 OD2 REMARK 470 GLN B1310 CG CD OE1 NE2 REMARK 470 ARG B1311 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C1497 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C1499 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC C1500 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA C1502 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DA C1503 N1 - C2 - N3 ANGL. DEV. = -3.4 DEGREES REMARK 500 DA C1503 C2 - N3 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C1505 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG C1505 N3 - C4 - C5 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA C1508 C5' - C4' - O4' ANGL. DEV. = 8.3 DEGREES REMARK 500 DT D1532 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG D1533 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT D1538 O4' - C1' - N1 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT D1538 N3 - C2 - O2 ANGL. DEV. = -4.9 DEGREES REMARK 500 DT D1539 O4' - C1' - N1 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG D1540 N1 - C6 - O6 ANGL. DEV. = 4.6 DEGREES REMARK 500 DA D1541 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT D1544 C6 - C5 - C7 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A1161 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A1161 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 TYR B1247 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B1261 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR B1289 CB - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B1302 CD - NE - CZ ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG B1302 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B1302 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1173 -118.00 -120.04 REMARK 500 LYS B1232 -81.90 -115.07 REMARK 500 ASP B1273 -119.75 -123.67 REMARK 500 ASP B1276 33.12 -144.49 REMARK 500 GLN B1310 -38.81 -147.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1121 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1135 SG REMARK 620 2 CYS A1138 SG 114.1 REMARK 620 3 CYS A1152 SG 112.6 105.5 REMARK 620 4 CYS A1155 SG 108.6 112.0 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1122 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1171 SG REMARK 620 2 CYS A1177 SG 106.4 REMARK 620 3 CYS A1187 SG 109.7 116.0 REMARK 620 4 CYS A1190 SG 111.8 108.2 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1221 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1235 SG REMARK 620 2 CYS B1238 SG 111.9 REMARK 620 3 CYS B1252 SG 114.3 105.6 REMARK 620 4 CYS B1255 SG 106.7 113.2 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1222 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1271 SG REMARK 620 2 CYS B1277 SG 107.2 REMARK 620 3 CYS B1287 SG 106.7 114.9 REMARK 620 4 CYS B1290 SG 111.5 109.1 107.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1222 DBREF 1DSZ A 1129 1214 UNP P10276 RARA_HUMAN 82 167 DBREF 1DSZ B 1229 1312 UNP P19793 RXRA_HUMAN 129 212 DBREF 1DSZ C 1495 1509 PDB 1DSZ 1DSZ 1495 1509 DBREF 1DSZ D 1531 1545 PDB 1DSZ 1DSZ 1531 1545 SEQADV 1DSZ GLY B 1228 UNP P19793 INSERTION SEQRES 1 C 15 DC DA DG DG DT DC DA DA DA DG DG DT DC SEQRES 2 C 15 DA DG SEQRES 1 D 15 DC DT DG DA DC DC DT DT DT DG DA DC DC SEQRES 2 D 15 DT DG SEQRES 1 A 86 PRO ARG ILE TYR LYS PRO CYS PHE VAL CYS GLN ASP LYS SEQRES 2 A 86 SER SER GLY TYR HIS TYR GLY VAL SER ALA CYS GLU GLY SEQRES 3 A 86 CYS LYS GLY PHE PHE ARG ARG SER ILE GLN LYS ASN MET SEQRES 4 A 86 VAL TYR THR CYS HIS ARG ASP LYS ASN CYS ILE ILE ASN SEQRES 5 A 86 LYS VAL THR ARG ASN ARG CYS GLN TYR CYS ARG LEU GLN SEQRES 6 A 86 LYS CYS PHE GLU VAL GLY MET SER LYS GLU SER VAL ARG SEQRES 7 A 86 ASN ASP ARG ASN LYS LYS LYS LYS SEQRES 1 B 85 GLY SER PHE THR LYS HIS ILE CYS ALA ILE CYS GLY ASP SEQRES 2 B 85 ARG SER SER GLY LYS HIS TYR GLY VAL TYR SER CYS GLU SEQRES 3 B 85 GLY CYS LYS GLY PHE PHE LYS ARG THR VAL ARG LYS ASP SEQRES 4 B 85 LEU THR TYR THR CYS ARG ASP ASN LYS ASP CYS LEU ILE SEQRES 5 B 85 ASP LYS ARG GLN ARG ASN ARG CYS GLN TYR CYS ARG TYR SEQRES 6 B 85 GLN LYS CYS LEU ALA MET GLY MET LYS ARG GLU ALA VAL SEQRES 7 B 85 GLN GLU GLU ARG GLN ARG GLY HET ZN A1121 1 HET ZN A1122 1 HET ZN B1221 1 HET ZN B1222 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *338(H2 O) HELIX 1 1 CYS A 1152 LYS A 1165 1 14 HELIX 2 2 THR A 1183 ARG A 1186 5 4 HELIX 3 3 CYS A 1187 VAL A 1198 1 12 HELIX 4 4 SER A 1201 VAL A 1205 5 5 HELIX 5 5 CYS B 1252 ASP B 1266 1 15 HELIX 6 6 CYS B 1287 MET B 1298 1 12 HELIX 7 7 LYS B 1301 VAL B 1305 5 5 SHEET 1 A 2 TYR A1145 HIS A1146 0 SHEET 2 A 2 VAL A1149 SER A1150 -1 O VAL A1149 N HIS A1146 SHEET 1 B 2 HIS B1233 ILE B1234 0 SHEET 2 B 2 ARG B1241 SER B1242 -1 N SER B1242 O HIS B1233 SHEET 1 C 2 LYS B1245 HIS B1246 0 SHEET 2 C 2 VAL B1249 TYR B1250 -1 O VAL B1249 N HIS B1246 LINK ZN ZN A1121 SG CYS A1135 1555 1555 2.33 LINK ZN ZN A1121 SG CYS A1138 1555 1555 2.29 LINK ZN ZN A1121 SG CYS A1152 1555 1555 2.36 LINK ZN ZN A1121 SG CYS A1155 1555 1555 2.26 LINK ZN ZN A1122 SG CYS A1171 1555 1555 2.30 LINK ZN ZN A1122 SG CYS A1177 1555 1555 2.32 LINK ZN ZN A1122 SG CYS A1187 1555 1555 2.33 LINK ZN ZN A1122 SG CYS A1190 1555 1555 2.37 LINK ZN ZN B1221 SG CYS B1235 1555 1555 2.32 LINK ZN ZN B1221 SG CYS B1238 1555 1555 2.34 LINK ZN ZN B1221 SG CYS B1252 1555 1555 2.33 LINK ZN ZN B1221 SG CYS B1255 1555 1555 2.34 LINK ZN ZN B1222 SG CYS B1271 1555 1555 2.32 LINK ZN ZN B1222 SG CYS B1277 1555 1555 2.37 LINK ZN ZN B1222 SG CYS B1287 1555 1555 2.40 LINK ZN ZN B1222 SG CYS B1290 1555 1555 2.31 SITE 1 AC1 4 CYS A1135 CYS A1138 CYS A1152 CYS A1155 SITE 1 AC2 4 CYS A1171 CYS A1177 CYS A1187 CYS A1190 SITE 1 AC3 4 CYS B1235 CYS B1238 CYS B1252 CYS B1255 SITE 1 AC4 4 CYS B1271 CYS B1277 CYS B1287 CYS B1290 CRYST1 80.660 33.900 101.860 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012398 0.000000 0.000000 0.00000 SCALE2 0.000000 0.029499 -0.000001 0.00000 SCALE3 0.000000 0.000000 0.009817 0.00000