HEADER TOXIN 08-SEP-94 1DTP TITLE THE STRUCTURE OF THE ISOLATED CATALYTIC DOMAIN OF DIPHTHERIA TOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHTHERIA TOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEPHAGE BETA; SOURCE 3 ORGANISM_TAXID: 10703 KEYWDS TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.WEISS,D.EISENBERG REVDAT 3 07-FEB-24 1DTP 1 REMARK REVDAT 2 24-FEB-09 1DTP 1 VERSN REVDAT 1 01-NOV-94 1DTP 0 JRNL AUTH M.S.WEISS,S.R.BLANKE,R.J.COLLIER,D.EISENBERG JRNL TITL STRUCTURE OF THE ISOLATED CATALYTIC DOMAIN OF DIPHTHERIA JRNL TITL 2 TOXIN. JRNL REF BIOCHEMISTRY V. 34 773 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7827036 JRNL DOI 10.1021/BI00003A010 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.BENNETT,S.CHOE,D.EISENBERG REMARK 1 TITL THE REFINED STRUCTURE OF DIMERIC DIPHTHERIA TOXIN AT 2.0 REMARK 1 TITL 2 ANGSTROMS RESOLUTION REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH M.J.BENNETT,D.EISENBERG REMARK 1 TITL THE REFINED STRUCTURE OF MONOMERIC DIPHTHERIA TOXIN REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH M.J.BENNETT,S.CHOE,D.EISENBERG REMARK 1 TITL DOMAIN SWAPPING: ENTANGLING ALLIANCES BETWEEN PROTEINS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 3127 1994 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.CHOE,M.J.BENNETT,G.FUJII,P.M.G.CURMI,K.A.KANTARDJEFF, REMARK 1 AUTH 2 R.J.COLLIER,D.EISENBERG REMARK 1 TITL THREE DOMAINS FOR THREE FUNCTIONS: THE CRYSTAL STRUCTURE OF REMARK 1 TITL 2 DIPHTHERIA TOXIN REMARK 1 REF NATURE V. 357 216 1992 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 5 REMARK 1 AUTH K.KANTARDJEFF,R.J.COLLIER,D.EISENBERG REMARK 1 TITL X-RAY GRADE CRYSTALS OF THE ENZYMATIC FRAGMENT OF DIPHTHERIA REMARK 1 TITL 2 TOXIN REMARK 1 REF J.BIOL.CHEM. V. 264 10402 1989 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 5228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.023 REMARK 3 BOND ANGLES (DEGREES) : 4.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.85000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.85000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 ASN A 189 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 21 NE2 HIS A 21 CD2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 10 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 VAL A 13 CG1 - CB - CG2 ANGL. DEV. = -18.2 DEGREES REMARK 500 VAL A 13 CA - CB - CG1 ANGL. DEV. = 11.4 DEGREES REMARK 500 TYR A 20 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 THR A 23 CA - CB - CG2 ANGL. DEV. = -8.9 DEGREES REMARK 500 GLY A 26 CA - C - N ANGL. DEV. = -19.1 DEGREES REMARK 500 VAL A 28 CG1 - CB - CG2 ANGL. DEV. = -11.4 DEGREES REMARK 500 TYR A 46 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 TYR A 46 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 TRP A 50 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 50 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 68 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 TYR A 85 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU A 88 CB - CG - CD2 ANGL. DEV. = -11.9 DEGREES REMARK 500 VAL A 91 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 LEU A 92 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 SER A 109 CA - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 VAL A 118 CG1 - CB - CG2 ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 VAL A 135 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 LEU A 136 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 TRP A 153 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP A 153 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU A 159 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 THR A 169 CA - CB - CG2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 MET A 178 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 GLY A 188 CA - C - N ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 27 0.58 -63.34 REMARK 500 SER A 40 79.73 -67.90 REMARK 500 ASP A 68 -139.52 45.37 REMARK 500 ASN A 69 88.11 85.73 REMARK 500 GLU A 70 89.32 56.28 REMARK 500 ASN A 71 87.30 94.39 REMARK 500 ALA A 77 148.72 177.74 REMARK 500 ASP A 97 59.60 -91.50 REMARK 500 THR A 111 32.57 -167.11 REMARK 500 LYS A 125 -75.72 -65.19 REMARK 500 ALA A 158 42.95 -71.48 REMARK 500 ASP A 176 -74.11 -76.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 27 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APU A 200 DBREF 1DTP A 1 190 UNP P00588 DTX_CORBE 33 222 SEQRES 1 A 190 GLY ALA ASP ASP VAL VAL ASP SER SER LYS SER PHE VAL SEQRES 2 A 190 MET GLU ASN PHE SER SER TYR HIS GLY THR LYS PRO GLY SEQRES 3 A 190 TYR VAL ASP SER ILE GLN LYS GLY ILE GLN LYS PRO LYS SEQRES 4 A 190 SER GLY THR GLN GLY ASN TYR ASP ASP ASP TRP LYS GLY SEQRES 5 A 190 PHE TYR SER THR ASP ASN LYS TYR ASP ALA ALA GLY TYR SEQRES 6 A 190 SER VAL ASP ASN GLU ASN PRO LEU SER GLY LYS ALA GLY SEQRES 7 A 190 GLY VAL VAL LYS VAL THR TYR PRO GLY LEU THR LYS VAL SEQRES 8 A 190 LEU ALA LEU LYS VAL ASP ASN ALA GLU THR ILE LYS LYS SEQRES 9 A 190 GLU LEU GLY LEU SER LEU THR GLU PRO LEU MET GLU GLN SEQRES 10 A 190 VAL GLY THR GLU GLU PHE ILE LYS ARG PHE GLY ASP GLY SEQRES 11 A 190 ALA SER ARG VAL VAL LEU SER LEU PRO PHE ALA GLU GLY SEQRES 12 A 190 SER SER SER VAL GLU TYR ILE ASN ASN TRP GLU GLN ALA SEQRES 13 A 190 LYS ALA LEU SER VAL GLU LEU GLU ILE ASN PHE GLU THR SEQRES 14 A 190 ARG GLY LYS ARG GLY GLN ASP ALA MET TYR GLU TYR MET SEQRES 15 A 190 ALA GLN ALA CYS ALA GLY ASN ARG HET APU A 200 43 HETNAM APU ADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE FORMUL 2 APU C19 H25 N7 O15 P2 FORMUL 3 HOH *8(H2 O) HELIX 1 H1 TYR A 27 LYS A 33 1 7 HELIX 2 H2 LYS A 59 TYR A 65 1 7 HELIX 3 H3 ALA A 99 LEU A 106 1 8 HELIX 4 H4 LEU A 114 VAL A 118 1 5 HELIX 5 H5 GLU A 121 GLY A 128 1 8 HELIX 6 H6 GLY A 174 CYS A 186 1 13 SHEET 1 S1 5 PHE A 12 GLU A 15 0 SHEET 2 S1 5 THR A 89 LYS A 95 -1 SHEET 3 S1 5 ARG A 133 PRO A 139 1 SHEET 4 S1 5 SER A 146 ASN A 152 -1 SHEET 5 S1 5 PHE A 53 THR A 56 -1 SHEET 1 S2 3 PHE A 17 THR A 23 0 SHEET 2 S2 3 GLY A 79 TYR A 85 -1 SHEET 3 S2 3 SER A 160 ASN A 166 -1 SITE 1 CAT 11 HIS A 21 GLY A 22 LYS A 24 ILE A 31 SITE 2 CAT 11 GLY A 34 THR A 42 GLY A 44 ASN A 45 SITE 3 CAT 11 TYR A 54 TYR A 65 ASN A 69 SITE 1 AC1 16 HIS A 21 GLY A 22 LYS A 24 TYR A 27 SITE 2 AC1 16 ILE A 31 GLY A 34 ILE A 35 GLN A 36 SITE 3 AC1 16 PRO A 38 THR A 42 GLY A 44 ASN A 45 SITE 4 AC1 16 PHE A 53 TYR A 54 TYR A 65 ASN A 69 CRYST1 55.700 43.900 73.900 90.00 101.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017953 0.000000 0.003653 0.00000 SCALE2 0.000000 0.022779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013809 0.00000