HEADER METAL TRANSPORT 13-JAN-00 1DTZ TITLE STRUCTURE OF CAMEL APO-LACTOFERRIN DEMONSTRATES ITS DUAL ROLE IN TITLE 2 SEQUESTERING AND TRANSPORTING FERRIC IONS SIMULTANEOUSLY:CRYSTAL TITLE 3 STRUCTURE OF CAMEL APO-LACTOFERRIN AT 2.6A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: APO LACTOFERRIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: ARABIAN CAMEL; SOURCE 4 ORGANISM_TAXID: 9838 KEYWDS CAMEL, LACTOFERRIN, APOLACTOFERRIN, TRANSFERRIN, MILK PROTEIN, METAL KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.A.KHAN,P.KUMAR,M.PARAMASIVAM,A.SRINIVASAN,R.S.YADAV,M.S.SAHANI, AUTHOR 2 T.P.SINGH REVDAT 4 30-OCT-24 1DTZ 1 SEQADV REVDAT 3 24-FEB-09 1DTZ 1 VERSN REVDAT 2 01-APR-03 1DTZ 1 JRNL REVDAT 1 20-JUN-01 1DTZ 0 JRNL AUTH J.A.KHAN,P.KUMAR,M.PARAMASIVAM,R.S.YADAV,M.S.SAHANI, JRNL AUTH 2 S.SHARMA,A.SRINIVASAN,T.P.SINGH JRNL TITL CAMEL LACTOFERRIN, A TRANSFERRIN-CUM-LACTOFERRIN: CRYSTAL JRNL TITL 2 STRUCTURE OF CAMEL APOLACTOFERRIN AT 2.6 A RESOLUTION AND JRNL TITL 3 STRUCTURAL BASIS OF ITS DUAL ROLE. JRNL REF J.MOL.BIOL. V. 309 751 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11397094 JRNL DOI 10.1006/JMBI.2001.4692 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 647154.920 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 22397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3349 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 161 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : -0.95000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.040 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.490 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.760 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.300 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 70.11 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DTZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000010364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 2.980 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.20100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL ETHANOL TRISODIUM CITRATE, PH REMARK 280 8.0, MICRODIALYSIS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 87.92000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 87.92000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 570 N CA C O CB REMARK 480 LEU A 571 N CA C O CB REMARK 480 LEU A 572 N CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 652 N GLY A 653 1.26 REMARK 500 O LEU A 651 N GLN A 652 1.30 REMARK 500 O LYS A 628 N PHE A 629 1.60 REMARK 500 O TRP A 448 N ASN A 449 1.67 REMARK 500 O GLU A 419 N SER A 420 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 418 C GLU A 419 N -0.187 REMARK 500 GLU A 419 C SER A 420 N -0.155 REMARK 500 SER A 420 C SER A 421 N 0.166 REMARK 500 TRP A 448 C ASN A 449 N -0.304 REMARK 500 ASN A 449 CA ASN A 449 CB 0.227 REMARK 500 LYS A 628 C PHE A 629 N -0.357 REMARK 500 LEU A 651 C GLN A 652 N -0.349 REMARK 500 GLN A 652 C GLY A 653 N -0.389 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 141 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 PRO A 418 N - CA - C ANGL. DEV. = 40.0 DEGREES REMARK 500 GLU A 419 CA - CB - CG ANGL. DEV. = -23.9 DEGREES REMARK 500 GLU A 419 CB - CG - CD ANGL. DEV. = 43.4 DEGREES REMARK 500 GLU A 419 CA - C - N ANGL. DEV. = 39.0 DEGREES REMARK 500 GLU A 419 O - C - N ANGL. DEV. = -30.3 DEGREES REMARK 500 SER A 420 C - N - CA ANGL. DEV. = 35.7 DEGREES REMARK 500 TRP A 448 CA - C - N ANGL. DEV. = 26.6 DEGREES REMARK 500 TRP A 448 O - C - N ANGL. DEV. = -28.0 DEGREES REMARK 500 ASN A 449 C - N - CA ANGL. DEV. = 40.4 DEGREES REMARK 500 ASN A 449 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 CYS A 532 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 LYS A 628 CA - C - N ANGL. DEV. = 29.7 DEGREES REMARK 500 LYS A 628 O - C - N ANGL. DEV. = -31.0 DEGREES REMARK 500 PHE A 629 C - N - CA ANGL. DEV. = 51.6 DEGREES REMARK 500 PHE A 629 CB - CG - CD2 ANGL. DEV. = 23.3 DEGREES REMARK 500 PHE A 629 CB - CG - CD1 ANGL. DEV. = -24.6 DEGREES REMARK 500 LEU A 651 CA - C - N ANGL. DEV. = 24.7 DEGREES REMARK 500 LEU A 651 O - C - N ANGL. DEV. = -51.9 DEGREES REMARK 500 GLN A 652 CB - CG - CD ANGL. DEV. = 16.4 DEGREES REMARK 500 GLN A 652 CA - C - N ANGL. DEV. = 50.7 DEGREES REMARK 500 GLN A 652 O - C - N ANGL. DEV. = -54.8 DEGREES REMARK 500 GLY A 653 C - N - CA ANGL. DEV. = 39.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 57.22 -104.34 REMARK 500 LYS A 3 178.16 -58.90 REMARK 500 SER A 41 146.89 178.54 REMARK 500 GLU A 52 3.21 48.81 REMARK 500 ASP A 70 -16.10 -42.85 REMARK 500 THR A 84 161.97 177.01 REMARK 500 TRP A 125 -56.13 -138.90 REMARK 500 PRO A 141 -51.89 -12.91 REMARK 500 CYS A 160 -13.35 89.74 REMARK 500 CYS A 183 47.87 -97.53 REMARK 500 SER A 185 -4.91 -54.50 REMARK 500 VAL A 209 -154.21 -129.35 REMARK 500 PRO A 232 -0.60 -59.48 REMARK 500 PRO A 238 162.82 -42.35 REMARK 500 GLU A 264 -75.58 -45.68 REMARK 500 SER A 284 133.96 -22.55 REMARK 500 PRO A 292 -177.28 -56.24 REMARK 500 LEU A 299 -44.27 63.36 REMARK 500 ASP A 315 -167.58 -110.37 REMARK 500 ASN A 366 33.71 71.02 REMARK 500 GLN A 367 1.87 80.24 REMARK 500 LEU A 392 128.99 -176.15 REMARK 500 SER A 417 79.35 53.65 REMARK 500 PRO A 418 -46.92 -1.64 REMARK 500 SER A 421 -155.81 -162.64 REMARK 500 LEU A 423 -164.73 -72.78 REMARK 500 ASN A 443 108.80 -173.59 REMARK 500 LYS A 445 63.05 -102.01 REMARK 500 ILE A 446 101.60 -178.20 REMARK 500 TRP A 448 85.40 -56.64 REMARK 500 ASP A 462 34.50 75.13 REMARK 500 THR A 464 -71.83 -16.46 REMARK 500 TRP A 467 -65.85 -154.85 REMARK 500 PHE A 475 5.46 -158.63 REMARK 500 ARG A 482 70.66 -100.87 REMARK 500 PHE A 483 7.73 -69.46 REMARK 500 PHE A 486 127.56 -177.26 REMARK 500 PHE A 487 114.87 83.98 REMARK 500 ALA A 506 -101.03 -96.16 REMARK 500 GLU A 510 108.88 75.17 REMARK 500 LEU A 513 115.30 -16.74 REMARK 500 CYS A 515 -13.47 82.33 REMARK 500 PRO A 517 61.43 -68.70 REMARK 500 SER A 520 8.23 -68.48 REMARK 500 ARG A 522 -75.83 -20.74 REMARK 500 LEU A 523 49.07 -76.04 REMARK 500 GLU A 535 33.84 -90.56 REMARK 500 VAL A 543 -156.61 -149.25 REMARK 500 ASP A 550 25.46 179.14 REMARK 500 ASN A 551 2.25 -167.05 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 419 SER A 420 98.94 REMARK 500 TRP A 448 ASN A 449 101.58 REMARK 500 LYS A 628 PHE A 629 -82.86 REMARK 500 LEU A 651 GLN A 652 -143.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 420 -21.11 REMARK 500 TRP A 448 13.63 REMARK 500 LEU A 651 -58.20 REMARK 500 GLN A 652 42.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 1DTZ A 1 689 UNP Q9TUM0 TRFL_CAMDR 20 708 SEQADV 1DTZ LYS A 17 UNP Q9TUM0 SER 36 CONFLICT SEQADV 1DTZ GLN A 87 UNP Q9TUM0 ASN 106 CONFLICT SEQADV 1DTZ PHE A 242 UNP Q9TUM0 SER 261 CONFLICT SEQADV 1DTZ LYS A 312 UNP Q9TUM0 SER 331 CONFLICT SEQADV 1DTZ ASP A 477 UNP Q9TUM0 ASN 496 CONFLICT SEQADV 1DTZ LEU A 513 UNP Q9TUM0 ASN 532 CONFLICT SEQADV 1DTZ LEU A 523 UNP Q9TUM0 TYR 542 CONFLICT SEQADV 1DTZ GLY A 556 UNP Q9TUM0 ASN 575 CONFLICT SEQADV 1DTZ ARG A 608 UNP Q9TUM0 GLU 627 CONFLICT SEQADV 1DTZ GLU A 623 UNP Q9TUM0 GLN 642 CONFLICT SEQADV 1DTZ ASP A 658 UNP Q9TUM0 GLU 677 CONFLICT SEQRES 1 A 689 ALA SER LYS LYS SER VAL ARG TRP CYS THR THR SER PRO SEQRES 2 A 689 ALA GLU SER LYS LYS CYS ALA GLN TRP GLN ARG ARG MET SEQRES 3 A 689 LYS LYS VAL ARG GLY PRO SER VAL THR CYS VAL LYS LYS SEQRES 4 A 689 THR SER ARG PHE GLU CYS ILE GLN ALA ILE SER THR GLU SEQRES 5 A 689 LYS ALA ASP ALA VAL THR LEU ASP GLY GLY LEU VAL TYR SEQRES 6 A 689 ASP ALA GLY LEU ASP PRO TYR LYS LEU ARG PRO ILE ALA SEQRES 7 A 689 ALA GLU VAL TYR GLY THR GLU ASN GLN PRO GLN THR HIS SEQRES 8 A 689 TYR TYR ALA VAL ALA ILE ALA LYS LYS GLY THR ASN PHE SEQRES 9 A 689 GLN LEU ASN GLN LEU GLN GLY LEU LYS SER CYS HIS THR SEQRES 10 A 689 GLY LEU GLY ARG SER ALA GLY TRP ASN ILE PRO MET GLY SEQRES 11 A 689 LEU LEU ARG PRO PHE LEU ASP TRP THR GLY PRO PRO GLU SEQRES 12 A 689 PRO LEU GLN LYS ALA VAL ALA LYS PHE PHE SER ALA SER SEQRES 13 A 689 CYS VAL PRO CYS VAL ASP GLY LYS GLU TYR PRO ASN LEU SEQRES 14 A 689 CYS GLN LEU CYS ALA GLY THR GLY GLU ASN LYS CYS ALA SEQRES 15 A 689 CYS SER SER GLN GLU PRO TYR PHE GLY TYR SER GLY ALA SEQRES 16 A 689 PHE LYS CYS LEU GLN ASP GLY ALA GLY ASP VAL ALA PHE SEQRES 17 A 689 VAL LYS ASP SER THR VAL PHE GLU SER LEU PRO ALA LYS SEQRES 18 A 689 ALA ASP ARG ASP GLN TYR GLU LEU LEU CYS PRO ASN ASN SEQRES 19 A 689 THR ARG LYS PRO VAL ASP ALA PHE GLN GLU CYS HIS LEU SEQRES 20 A 689 ALA ARG VAL PRO SER HIS ALA VAL VAL ALA ARG SER VAL SEQRES 21 A 689 ASN GLY LYS GLU ASP LEU ILE TRP LYS LEU LEU VAL LYS SEQRES 22 A 689 ALA GLN GLU LYS PHE GLY ARG GLY LYS PRO SER ALA PHE SEQRES 23 A 689 GLN LEU PHE GLY SER PRO ALA GLY GLN LYS ASP LEU LEU SEQRES 24 A 689 PHE LYS ASP SER ALA LEU GLY LEU LEU ARG ILE PRO LYS SEQRES 25 A 689 LYS ILE ASP SER GLY LEU TYR LEU GLY SER ASN TYR ILE SEQRES 26 A 689 THR ALA ILE ARG GLY LEU ARG GLU THR ALA ALA GLU VAL SEQRES 27 A 689 GLU LEU ARG ARG ALA GLN VAL VAL TRP CYS ALA VAL GLY SEQRES 28 A 689 SER ASP GLU GLN LEU LYS CYS GLN GLU TRP SER ARG GLN SEQRES 29 A 689 SER ASN GLN SER VAL VAL CYS ALA THR ALA SER THR THR SEQRES 30 A 689 GLU ASP CYS ILE ALA LEU VAL LEU LYS GLY GLU ALA ASP SEQRES 31 A 689 ALA LEU SER LEU ASP GLY GLY TYR ILE TYR ILE ALA GLY SEQRES 32 A 689 LYS CYS GLY LEU VAL PRO VAL LEU ALA GLU SER GLN GLN SEQRES 33 A 689 SER PRO GLU SER SER GLY LEU ASP CYS VAL HIS ARG PRO SEQRES 34 A 689 VAL LYS GLY TYR LEU ALA VAL ALA VAL VAL ARG LYS ALA SEQRES 35 A 689 ASN ASP LYS ILE THR TRP ASN SER LEU ARG GLY LYS LYS SEQRES 36 A 689 SER CYS HIS THR ALA VAL ASP ARG THR ALA GLY TRP ASN SEQRES 37 A 689 ILE PRO MET GLY PRO LEU PHE LYS ASP THR ASP SER CYS SEQRES 38 A 689 ARG PHE ASP GLU PHE PHE SER GLN SER CYS ALA PRO GLY SEQRES 39 A 689 SER ASP PRO ARG SER LYS LEU CYS ALA LEU CYS ALA GLY SEQRES 40 A 689 ASN GLU GLU GLY GLN LEU LYS CYS VAL PRO ASN SER SER SEQRES 41 A 689 GLU ARG LEU TYR GLY TYR THR GLY ALA PHE ARG CYS LEU SEQRES 42 A 689 ALA GLU ASN VAL GLY ASP VAL ALA PHE VAL LYS ASP VAL SEQRES 43 A 689 THR VAL LEU ASP ASN THR ASP GLY LYS GLY THR GLU GLN SEQRES 44 A 689 TRP ALA LYS ASP LEU LYS LEU GLY ASP PHE GLU LEU LEU SEQRES 45 A 689 CYS LEU ASN GLY THR ARG LYS PRO VAL THR GLU ALA GLU SEQRES 46 A 689 SER CYS HIS LEU PRO VAL ALA PRO ASN HIS ALA VAL VAL SEQRES 47 A 689 SER ARG ILE ASP LYS VAL ALA HIS LEU ARG GLN VAL LEU SEQRES 48 A 689 LEU ARG GLN GLN ALA HIS PHE GLY ARG ASN GLY GLU ASP SEQRES 49 A 689 CYS PRO GLY LYS PHE CYS LEU PHE GLN SER LYS THR LYS SEQRES 50 A 689 ASN LEU LEU PHE ASN ASP ASN THR GLU CYS LEU ALA LYS SEQRES 51 A 689 LEU GLN GLY LYS THR THR TYR ASP GLU TYR LEU GLY PRO SEQRES 52 A 689 GLN TYR VAL THR ALA ILE ALA LYS LEU ARG ARG CYS SER SEQRES 53 A 689 THR SER PRO LEU LEU GLU ALA CYS ALA PHE LEU MET ARG FORMUL 2 HOH *227(H2 O) HELIX 1 1 SER A 12 LYS A 28 1 17 HELIX 2 2 SER A 41 THR A 51 1 11 HELIX 3 3 ASP A 60 LEU A 69 1 10 HELIX 4 4 GLN A 105 LEU A 109 5 5 HELIX 5 5 TRP A 125 LEU A 132 1 8 HELIX 6 6 ARG A 133 LEU A 136 5 4 HELIX 7 7 PRO A 144 PHE A 153 1 10 HELIX 8 8 TYR A 166 GLN A 171 1 6 HELIX 9 9 THR A 176 LYS A 180 5 5 HELIX 10 10 PHE A 190 ASP A 201 1 12 HELIX 11 11 SER A 212 LEU A 218 1 7 HELIX 12 12 ALA A 220 ASP A 225 1 6 HELIX 13 13 PRO A 238 PHE A 242 5 5 HELIX 14 14 LYS A 263 GLY A 279 1 17 HELIX 15 15 ASP A 315 GLY A 321 1 7 HELIX 16 16 GLY A 321 GLY A 330 1 10 HELIX 17 17 THR A 334 GLN A 344 1 11 HELIX 18 18 GLY A 351 ASN A 366 1 16 HELIX 19 19 THR A 376 LYS A 386 1 11 HELIX 20 20 ASP A 395 LYS A 404 1 10 HELIX 21 21 SER A 499 LEU A 501 5 3 HELIX 22 22 TYR A 524 GLU A 535 1 12 HELIX 23 23 ASP A 545 LEU A 549 1 5 HELIX 24 24 PRO A 580 ALA A 584 5 5 HELIX 25 25 GLU A 583 CYS A 587 5 5 HELIX 26 26 LYS A 603 GLY A 619 1 17 HELIX 27 27 THR A 656 GLY A 662 1 7 HELIX 28 28 GLY A 662 ARG A 674 1 13 HELIX 29 29 SER A 678 LEU A 687 1 10 SHEET 1 A 2 VAL A 6 THR A 10 0 SHEET 2 A 2 VAL A 34 LYS A 38 1 O THR A 35 N TRP A 8 SHEET 1 B 4 VAL A 57 LEU A 59 0 SHEET 2 B 4 ALA A 254 ARG A 258 -1 N ALA A 254 O LEU A 59 SHEET 3 B 4 LEU A 74 GLU A 80 -1 N ARG A 75 O ALA A 257 SHEET 4 B 4 LEU A 307 ARG A 309 -1 N LEU A 308 O ALA A 79 SHEET 1 C 6 ALA A 155 CYS A 157 0 SHEET 2 C 6 LYS A 113 HIS A 116 1 N SER A 114 O ALA A 155 SHEET 3 C 6 VAL A 206 LYS A 210 1 O VAL A 206 N CYS A 115 SHEET 4 C 6 HIS A 91 LYS A 99 -1 N VAL A 95 O VAL A 209 SHEET 5 C 6 TYR A 227 CYS A 231 -1 N GLU A 228 O ALA A 98 SHEET 6 C 6 THR A 235 LYS A 237 -1 O THR A 235 N CYS A 231 SHEET 1 D 5 ALA A 155 CYS A 157 0 SHEET 2 D 5 LYS A 113 HIS A 116 1 N SER A 114 O ALA A 155 SHEET 3 D 5 VAL A 206 LYS A 210 1 O VAL A 206 N CYS A 115 SHEET 4 D 5 HIS A 91 LYS A 99 -1 N VAL A 95 O VAL A 209 SHEET 5 D 5 ALA A 248 PRO A 251 -1 O ALA A 248 N ALA A 94 SHEET 1 E 2 VAL A 345 VAL A 350 0 SHEET 2 E 2 VAL A 369 ALA A 374 1 N VAL A 370 O VAL A 345 SHEET 1 F 4 LEU A 392 LEU A 394 0 SHEET 2 F 4 ALA A 596 SER A 599 -1 O ALA A 596 N LEU A 394 SHEET 3 F 4 VAL A 408 GLN A 415 -1 N VAL A 408 O SER A 599 SHEET 4 F 4 THR A 645 LYS A 650 -1 N GLU A 646 O SER A 414 SHEET 1 G 5 GLN A 489 CYS A 491 0 SHEET 2 G 5 LYS A 455 HIS A 458 1 N SER A 456 O GLN A 489 SHEET 3 G 5 VAL A 540 LYS A 544 1 O VAL A 540 N CYS A 457 SHEET 4 G 5 ALA A 435 ARG A 440 -1 N VAL A 436 O VAL A 543 SHEET 5 G 5 PHE A 569 GLU A 570 -1 O GLU A 570 N VAL A 439 SSBOND 1 CYS A 9 CYS A 45 1555 1555 2.03 SSBOND 2 CYS A 19 CYS A 36 1555 1555 2.03 SSBOND 3 CYS A 115 CYS A 198 1555 1555 2.02 SSBOND 4 CYS A 157 CYS A 173 1555 1555 2.03 SSBOND 5 CYS A 160 CYS A 183 1555 1555 2.03 SSBOND 6 CYS A 170 CYS A 181 1555 1555 2.03 SSBOND 7 CYS A 231 CYS A 245 1555 1555 2.03 SSBOND 8 CYS A 348 CYS A 380 1555 1555 2.03 SSBOND 9 CYS A 358 CYS A 371 1555 1555 2.02 SSBOND 10 CYS A 405 CYS A 684 1555 1555 2.03 SSBOND 11 CYS A 425 CYS A 647 1555 1555 2.03 SSBOND 12 CYS A 457 CYS A 532 1555 1555 2.03 SSBOND 13 CYS A 481 CYS A 675 1555 1555 2.03 SSBOND 14 CYS A 491 CYS A 505 1555 1555 2.04 SSBOND 15 CYS A 502 CYS A 515 1555 1555 2.03 SSBOND 16 CYS A 573 CYS A 587 1555 1555 2.03 SSBOND 17 CYS A 625 CYS A 630 1555 1555 2.04 CRYST1 175.840 80.920 56.350 90.00 92.35 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005687 0.000000 0.000233 0.00000 SCALE2 0.000000 0.012358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017761 0.00000