data_1DU0 # _entry.id 1DU0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DU0 pdb_00001du0 10.2210/pdb1du0/pdb NDB PD0114 ? ? RCSB RCSB010365 ? ? WWPDB D_1000010365 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-07-31 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DU0 _pdbx_database_status.recvd_initial_deposition_date 2000-01-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HDD 'WILD TYPE ENGRAILED-DNA CO-CRYSTAL 2.8 ANGSTROMS' unspecified PDB 2HDD 'Q50K VARIANT ENGRAILED-DNA CO-CRYSTAL' unspecified PDB 3HDD 'WILD TYPE ENGRAILED-DNA CO-CRYSTAL 2.2 ANGSTROMS' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Grant, R.A.' 1 'Rould, M.A.' 2 'Klemm, J.D.' 3 'Pabo, C.O.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Exploring the role of glutamine 50 in the homeodomain-DNA interface: crystal structure of engrailed (Gln50 --> ala) complex at 2.0 A. ; Biochemistry 39 8187 8192 2000 BICHAW US 0006-2960 0033 ? 10889025 10.1021/bi000071a 1 ;Engrailed homeodomain-DNA complex at 2.2 Angstroms resolution: A detailed view of the interface and comparison with other engrailed structures ; J.Mol.Biol. 284 351 361 1998 JMOBAK UK 0022-2836 0070 ? ? 10.1006/jmbi.1998.2147 2 ;Engrailed (gln50->lys) homeodomain-DNA complex at 1.9 Angstroms resolution: structural basis for enhanced affinity and altered specificity ; Structure 5 1047 1054 1997 STRUE6 UK 0969-2126 2005 ? ? '10.1016/S0969-2126(97)00256-6' 3 'Differential DNA-binding specificity of the engrailed homeodomain: the role of residue 50' Biochemistry 33 9187 9194 1994 BICHAW US 0006-2960 0033 ? ? ? 4 ;Crystal structure of an engrailed homeodomain-DNA comples at 2.8 Angstroms resolution: a framework for understanding homeodomain-DNA interactions ; 'Cell(Cambridge,Mass.)' 63 579 590 1990 CELLB5 US 0092-8674 0998 ? ? '10.1016/0092-8674(90)90453-L' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Grant, R.A.' 1 ? primary 'Rould, M.A.' 2 ? primary 'Klemm, J.D.' 3 ? primary 'Pabo, C.O.' 4 ? 1 'Fraenkel, E.' 5 ? 1 'Rould, M.A.' 6 ? 1 'Chambers, K.A.' 7 ? 1 'Pabo, C.O.' 8 ? 2 'Tucker-Kellogg, L.' 9 ? 2 'Rould, M.A.' 10 ? 2 'Chambers, K.A.' 11 ? 2 'Ades, S.E.' 12 ? 2 'Sauer, R.T.' 13 ? 3 'Ades, S.E.' 14 ? 3 'Sauer, R.T.' 15 ? 4 'Kissinger, C.A.' 16 ? 4 'Liu, B.' 17 ? 4 'Martin-Blanco, E.' 18 ? 4 'Kornberg, T.B.' 19 ? 4 'Pabo, C.O.' 20 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*TP*AP*CP*CP*TP*AP*A)-3') ; 6387.157 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*TP*TP*AP*GP*GP*TP*AP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3') ; 6494.248 1 ? ? ? ? 3 polymer man 'ENGRAILED HOMEODOMAIN' 6907.921 2 ? GLN50ALA ? ? 4 water nat water 18.015 103 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'HOMEOTIC PROTEIN ENGRAILED, SEGMENTATION POLARITY HOMEOBOX PROTEIN ENGRAILED' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DT)(DG)(DC)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DT)(DA)(DC)(DC)(DT)(DA) (DA) ; TTTTGCCATGTAATTACCTAA C ? 2 polydeoxyribonucleotide no no ;(DA)(DT)(DT)(DA)(DG)(DG)(DT)(DA)(DA)(DT)(DT)(DA)(DC)(DA)(DT)(DG)(DG)(DC)(DA)(DA) (DA) ; ATTAGGTAATTACATGGCAAA D ? 3 'polypeptide(L)' no no RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFANKRAKIKKS RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFANKRAKIKKS A,B ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DT n 1 16 DA n 1 17 DC n 1 18 DC n 1 19 DT n 1 20 DA n 1 21 DA n 2 1 DA n 2 2 DT n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DG n 2 7 DT n 2 8 DA n 2 9 DA n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DT n 2 16 DG n 2 17 DG n 2 18 DC n 2 19 DA n 2 20 DA n 2 21 DA n 3 1 ARG n 3 2 PRO n 3 3 ARG n 3 4 THR n 3 5 ALA n 3 6 PHE n 3 7 SER n 3 8 SER n 3 9 GLU n 3 10 GLN n 3 11 LEU n 3 12 ALA n 3 13 ARG n 3 14 LEU n 3 15 LYS n 3 16 ARG n 3 17 GLU n 3 18 PHE n 3 19 ASN n 3 20 GLU n 3 21 ASN n 3 22 ARG n 3 23 TYR n 3 24 LEU n 3 25 THR n 3 26 GLU n 3 27 ARG n 3 28 ARG n 3 29 ARG n 3 30 GLN n 3 31 GLN n 3 32 LEU n 3 33 SER n 3 34 SER n 3 35 GLU n 3 36 LEU n 3 37 GLY n 3 38 LEU n 3 39 ASN n 3 40 GLU n 3 41 ALA n 3 42 GLN n 3 43 ILE n 3 44 LYS n 3 45 ILE n 3 46 TRP n 3 47 PHE n 3 48 ALA n 3 49 ASN n 3 50 LYS n 3 51 ARG n 3 52 ALA n 3 53 LYS n 3 54 ILE n 3 55 LYS n 3 56 LYS n 3 57 SER n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 201 201 DT T C . n A 1 2 DT 2 202 202 DT T C . n A 1 3 DT 3 203 203 DT T C . n A 1 4 DT 4 204 204 DT T C . n A 1 5 DG 5 205 205 DG G C . n A 1 6 DC 6 206 206 DC C C . n A 1 7 DC 7 207 207 DC C C . n A 1 8 DA 8 208 208 DA A C . n A 1 9 DT 9 209 209 DT T C . n A 1 10 DG 10 210 210 DG G C . n A 1 11 DT 11 211 211 DT T C . n A 1 12 DA 12 212 212 DA A C . n A 1 13 DA 13 213 213 DA A C . n A 1 14 DT 14 214 214 DT T C . n A 1 15 DT 15 215 215 DT T C . n A 1 16 DA 16 216 216 DA A C . n A 1 17 DC 17 217 217 DC C C . n A 1 18 DC 18 218 218 DC C C . n A 1 19 DT 19 219 219 DT T C . n A 1 20 DA 20 220 220 DA A C . n A 1 21 DA 21 221 221 DA A C . n B 2 1 DA 1 301 301 DA A D . n B 2 2 DT 2 302 302 DT T D . n B 2 3 DT 3 303 303 DT T D . n B 2 4 DA 4 304 304 DA A D . n B 2 5 DG 5 305 305 DG G D . n B 2 6 DG 6 306 306 DG G D . n B 2 7 DT 7 307 307 DT T D . n B 2 8 DA 8 308 308 DA A D . n B 2 9 DA 9 309 309 DA A D . n B 2 10 DT 10 310 310 DT T D . n B 2 11 DT 11 311 311 DT T D . n B 2 12 DA 12 312 312 DA A D . n B 2 13 DC 13 313 313 DC C D . n B 2 14 DA 14 314 314 DA A D . n B 2 15 DT 15 315 315 DT T D . n B 2 16 DG 16 316 316 DG G D . n B 2 17 DG 17 317 317 DG G D . n B 2 18 DC 18 318 318 DC C D . n B 2 19 DA 19 319 319 DA A D . n B 2 20 DA 20 320 320 DA A D . n B 2 21 DA 21 321 321 DA A D . n C 3 1 ARG 1 3 ? ? ? A . n C 3 2 PRO 2 4 ? ? ? A . n C 3 3 ARG 3 5 ? ? ? A . n C 3 4 THR 4 6 ? ? ? A . n C 3 5 ALA 5 7 7 ALA ALA A . n C 3 6 PHE 6 8 8 PHE PHE A . n C 3 7 SER 7 9 9 SER SER A . n C 3 8 SER 8 10 10 SER SER A . n C 3 9 GLU 9 11 11 GLU GLU A . n C 3 10 GLN 10 12 12 GLN GLN A . n C 3 11 LEU 11 13 13 LEU LEU A . n C 3 12 ALA 12 14 14 ALA ALA A . n C 3 13 ARG 13 15 15 ARG ARG A . n C 3 14 LEU 14 16 16 LEU LEU A . n C 3 15 LYS 15 17 17 LYS LYS A . n C 3 16 ARG 16 18 18 ARG ARG A . n C 3 17 GLU 17 19 19 GLU GLU A . n C 3 18 PHE 18 20 20 PHE PHE A . n C 3 19 ASN 19 21 21 ASN ASN A . n C 3 20 GLU 20 22 22 GLU GLU A . n C 3 21 ASN 21 23 23 ASN ASN A . n C 3 22 ARG 22 24 24 ARG ARG A . n C 3 23 TYR 23 25 25 TYR TYR A . n C 3 24 LEU 24 26 26 LEU LEU A . n C 3 25 THR 25 27 27 THR THR A . n C 3 26 GLU 26 28 28 GLU GLU A . n C 3 27 ARG 27 29 29 ARG ARG A . n C 3 28 ARG 28 30 30 ARG ARG A . n C 3 29 ARG 29 31 31 ARG ARG A . n C 3 30 GLN 30 32 32 GLN GLN A . n C 3 31 GLN 31 33 33 GLN GLN A . n C 3 32 LEU 32 34 34 LEU LEU A . n C 3 33 SER 33 35 35 SER SER A . n C 3 34 SER 34 36 36 SER SER A . n C 3 35 GLU 35 37 37 GLU GLU A . n C 3 36 LEU 36 38 38 LEU LEU A . n C 3 37 GLY 37 39 39 GLY GLY A . n C 3 38 LEU 38 40 40 LEU LEU A . n C 3 39 ASN 39 41 41 ASN ASN A . n C 3 40 GLU 40 42 42 GLU GLU A . n C 3 41 ALA 41 43 43 ALA ALA A . n C 3 42 GLN 42 44 44 GLN GLN A . n C 3 43 ILE 43 45 45 ILE ILE A . n C 3 44 LYS 44 46 46 LYS LYS A . n C 3 45 ILE 45 47 47 ILE ILE A . n C 3 46 TRP 46 48 48 TRP TRP A . n C 3 47 PHE 47 49 49 PHE PHE A . n C 3 48 ALA 48 50 50 ALA ALA A . n C 3 49 ASN 49 51 51 ASN ASN A . n C 3 50 LYS 50 52 52 LYS LYS A . n C 3 51 ARG 51 53 53 ARG ARG A . n C 3 52 ALA 52 54 54 ALA ALA A . n C 3 53 LYS 53 55 55 LYS LYS A . n C 3 54 ILE 54 56 56 ILE ILE A . n C 3 55 LYS 55 57 57 LYS LYS A . n C 3 56 LYS 56 58 58 LYS LYS A . n C 3 57 SER 57 59 59 SER SER A . n D 3 1 ARG 1 103 103 ARG ARG B . n D 3 2 PRO 2 104 104 PRO PRO B . n D 3 3 ARG 3 105 105 ARG ARG B . n D 3 4 THR 4 106 106 THR THR B . n D 3 5 ALA 5 107 107 ALA ALA B . n D 3 6 PHE 6 108 108 PHE PHE B . n D 3 7 SER 7 109 109 SER SER B . n D 3 8 SER 8 110 110 SER SER B . n D 3 9 GLU 9 111 111 GLU GLU B . n D 3 10 GLN 10 112 112 GLN GLN B . n D 3 11 LEU 11 113 113 LEU LEU B . n D 3 12 ALA 12 114 114 ALA ALA B . n D 3 13 ARG 13 115 115 ARG ARG B . n D 3 14 LEU 14 116 116 LEU LEU B . n D 3 15 LYS 15 117 117 LYS LYS B . n D 3 16 ARG 16 118 118 ARG ARG B . n D 3 17 GLU 17 119 119 GLU GLU B . n D 3 18 PHE 18 120 120 PHE PHE B . n D 3 19 ASN 19 121 121 ASN ASN B . n D 3 20 GLU 20 122 122 GLU GLU B . n D 3 21 ASN 21 123 123 ASN ASN B . n D 3 22 ARG 22 124 124 ARG ARG B . n D 3 23 TYR 23 125 125 TYR TYR B . n D 3 24 LEU 24 126 126 LEU LEU B . n D 3 25 THR 25 127 127 THR THR B . n D 3 26 GLU 26 128 128 GLU GLU B . n D 3 27 ARG 27 129 129 ARG ARG B . n D 3 28 ARG 28 130 130 ARG ARG B . n D 3 29 ARG 29 131 131 ARG ARG B . n D 3 30 GLN 30 132 132 GLN GLN B . n D 3 31 GLN 31 133 133 GLN GLN B . n D 3 32 LEU 32 134 134 LEU LEU B . n D 3 33 SER 33 135 135 SER SER B . n D 3 34 SER 34 136 136 SER SER B . n D 3 35 GLU 35 137 137 GLU GLU B . n D 3 36 LEU 36 138 138 LEU LEU B . n D 3 37 GLY 37 139 139 GLY GLY B . n D 3 38 LEU 38 140 140 LEU LEU B . n D 3 39 ASN 39 141 141 ASN ASN B . n D 3 40 GLU 40 142 142 GLU GLU B . n D 3 41 ALA 41 143 143 ALA ALA B . n D 3 42 GLN 42 144 144 GLN GLN B . n D 3 43 ILE 43 145 145 ILE ILE B . n D 3 44 LYS 44 146 146 LYS LYS B . n D 3 45 ILE 45 147 147 ILE ILE B . n D 3 46 TRP 46 148 148 TRP TRP B . n D 3 47 PHE 47 149 149 PHE PHE B . n D 3 48 ALA 48 150 150 ALA ALA B . n D 3 49 ASN 49 151 151 ASN ASN B . n D 3 50 LYS 50 152 152 LYS LYS B . n D 3 51 ARG 51 153 153 ARG ARG B . n D 3 52 ALA 52 154 154 ALA ALA B . n D 3 53 LYS 53 155 155 LYS LYS B . n D 3 54 ILE 54 156 156 ILE ILE B . n D 3 55 LYS 55 157 157 LYS LYS B . n D 3 56 LYS 56 158 158 LYS LYS B . n D 3 57 SER 57 159 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 408 408 HOH HOH C . E 4 HOH 2 409 409 HOH HOH C . E 4 HOH 3 411 411 HOH HOH C . E 4 HOH 4 417 417 HOH HOH C . E 4 HOH 5 419 419 HOH HOH C . E 4 HOH 6 426 426 HOH HOH C . E 4 HOH 7 429 429 HOH HOH C . E 4 HOH 8 430 430 HOH HOH C . E 4 HOH 9 431 431 HOH HOH C . E 4 HOH 10 432 432 HOH HOH C . E 4 HOH 11 434 434 HOH HOH C . E 4 HOH 12 435 435 HOH HOH C . E 4 HOH 13 441 441 HOH HOH C . E 4 HOH 14 445 445 HOH HOH C . E 4 HOH 15 450 450 HOH HOH C . E 4 HOH 16 451 451 HOH HOH C . E 4 HOH 17 453 453 HOH HOH C . E 4 HOH 18 454 454 HOH HOH C . E 4 HOH 19 457 457 HOH HOH C . E 4 HOH 20 461 461 HOH HOH C . E 4 HOH 21 463 463 HOH HOH C . E 4 HOH 22 481 481 HOH HOH C . E 4 HOH 23 483 483 HOH HOH C . E 4 HOH 24 485 485 HOH HOH C . E 4 HOH 25 490 490 HOH HOH C . E 4 HOH 26 491 491 HOH HOH C . E 4 HOH 27 496 496 HOH HOH C . E 4 HOH 28 501 501 HOH HOH C . E 4 HOH 29 503 503 HOH HOH C . F 4 HOH 1 405 405 HOH HOH D . F 4 HOH 2 406 406 HOH HOH D . F 4 HOH 3 418 418 HOH HOH D . F 4 HOH 4 420 420 HOH HOH D . F 4 HOH 5 421 421 HOH HOH D . F 4 HOH 6 423 423 HOH HOH D . F 4 HOH 7 428 428 HOH HOH D . F 4 HOH 8 433 433 HOH HOH D . F 4 HOH 9 438 438 HOH HOH D . F 4 HOH 10 439 439 HOH HOH D . F 4 HOH 11 440 440 HOH HOH D . F 4 HOH 12 449 449 HOH HOH D . F 4 HOH 13 455 455 HOH HOH D . F 4 HOH 14 456 456 HOH HOH D . F 4 HOH 15 459 459 HOH HOH D . F 4 HOH 16 460 460 HOH HOH D . F 4 HOH 17 476 476 HOH HOH D . F 4 HOH 18 478 478 HOH HOH D . F 4 HOH 19 482 482 HOH HOH D . F 4 HOH 20 487 487 HOH HOH D . F 4 HOH 21 498 498 HOH HOH D . F 4 HOH 22 499 499 HOH HOH D . F 4 HOH 23 500 500 HOH HOH D . G 4 HOH 1 401 401 HOH HOH A . G 4 HOH 2 402 402 HOH HOH A . G 4 HOH 3 403 403 HOH HOH A . G 4 HOH 4 404 404 HOH HOH A . G 4 HOH 5 413 413 HOH HOH A . G 4 HOH 6 414 414 HOH HOH A . G 4 HOH 7 422 422 HOH HOH A . G 4 HOH 8 442 442 HOH HOH A . G 4 HOH 9 452 452 HOH HOH A . G 4 HOH 10 464 464 HOH HOH A . G 4 HOH 11 465 465 HOH HOH A . G 4 HOH 12 466 466 HOH HOH A . G 4 HOH 13 471 471 HOH HOH A . G 4 HOH 14 475 475 HOH HOH A . G 4 HOH 15 480 480 HOH HOH A . G 4 HOH 16 486 486 HOH HOH A . G 4 HOH 17 488 488 HOH HOH A . G 4 HOH 18 492 492 HOH HOH A . G 4 HOH 19 494 494 HOH HOH A . G 4 HOH 20 495 495 HOH HOH A . G 4 HOH 21 497 497 HOH HOH A . H 4 HOH 1 407 407 HOH HOH B . H 4 HOH 2 410 410 HOH HOH B . H 4 HOH 3 412 412 HOH HOH B . H 4 HOH 4 415 415 HOH HOH B . H 4 HOH 5 416 416 HOH HOH B . H 4 HOH 6 424 424 HOH HOH B . H 4 HOH 7 425 425 HOH HOH B . H 4 HOH 8 427 427 HOH HOH B . H 4 HOH 9 436 436 HOH HOH B . H 4 HOH 10 437 437 HOH HOH B . H 4 HOH 11 443 443 HOH HOH B . H 4 HOH 12 444 444 HOH HOH B . H 4 HOH 13 446 446 HOH HOH B . H 4 HOH 14 447 447 HOH HOH B . H 4 HOH 15 448 448 HOH HOH B . H 4 HOH 16 458 458 HOH HOH B . H 4 HOH 17 467 467 HOH HOH B . H 4 HOH 18 468 468 HOH HOH B . H 4 HOH 19 469 469 HOH HOH B . H 4 HOH 20 470 470 HOH HOH B . H 4 HOH 21 472 472 HOH HOH B . H 4 HOH 22 473 473 HOH HOH B . H 4 HOH 23 474 474 HOH HOH B . H 4 HOH 24 477 477 HOH HOH B . H 4 HOH 25 479 479 HOH HOH B . H 4 HOH 26 484 484 HOH HOH B . H 4 HOH 27 489 489 HOH HOH B . H 4 HOH 28 493 493 HOH HOH B . H 4 HOH 29 502 502 HOH HOH B . H 4 HOH 30 504 504 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement 3.851 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1DU0 _cell.length_a 126.900 _cell.length_b 45.550 _cell.length_c 71.620 _cell.angle_alpha 90.00 _cell.angle_beta 119.90 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DU0 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 # _exptl.entry_id 1DU0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.31 _exptl_crystal.density_percent_sol 62.80 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'bis-Tris-propane, PEG 400, ammonium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'ammonium acetate' ? ? ? 1 2 1 bis-Tris-propane ? ? ? 1 3 1 'PEG 400' ? ? ? 1 4 2 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 128 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1996-01-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DU0 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.0 _reflns.number_obs 23204 _reflns.number_all 23204 _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs 0.0390000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 24.7 _reflns.pdbx_redundancy 4.9 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 70.3 _reflns_shell.Rmerge_I_obs 0.3510000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1697 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DU0 _refine.ls_number_reflns_obs 21566 _refine.ls_number_reflns_all 23204 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 89.0 _refine.ls_R_factor_obs 0.2370000 _refine.ls_R_factor_all 0.2370000 _refine.ls_R_factor_R_work 0.2340000 _refine.ls_R_factor_R_free 0.2700000 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 2168 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 39.7 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DU0 _refine_analyze.Luzzati_coordinate_error_obs 0.33 _refine_analyze.Luzzati_sigma_a_obs 0.41 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.39 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 930 _refine_hist.pdbx_number_atoms_nucleic_acid 855 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 1889 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 18.4 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.44 ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 2.71 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 4.07 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 4.80 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 7.33 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2044 _refine_ls_shell.R_factor_R_work 0.3630000 _refine_ls_shell.percent_reflns_obs 56.2 _refine_ls_shell.R_factor_R_free 0.3510000 _refine_ls_shell.R_factor_R_free_error 0.025 _refine_ls_shell.percent_reflns_R_free 9.0 _refine_ls_shell.number_reflns_R_free 203 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 DNA-RNA.PARAM TOPH19.SOL 'X-RAY DIFFRACTION' 3 PARAM19.SOL DNA-RNA.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1DU0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DU0 _struct.title 'ENGRAILED HOMEODOMAIN Q50A VARIANT DNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DU0 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'homeodomain, DNA-binding protein, protein-DNA complex, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP HMEN_DROME P02836 3 456 ? ? 2 PDB 1DU0 1DU0 1 ? ? ? 3 PDB 1DU0 1DU0 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DU0 A 1 ? 57 ? P02836 456 ? 512 ? 3 59 2 1 1DU0 B 1 ? 57 ? P02836 456 ? 512 ? 103 159 3 2 1DU0 C 1 ? 21 ? 1DU0 201 ? 221 ? 201 221 4 3 1DU0 D 1 ? 21 ? 1DU0 301 ? 321 ? 301 321 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1DU0 ALA A 48 ? UNP P02836 GLN 503 'engineered mutation' 50 1 2 1DU0 ALA B 48 ? UNP P02836 GLN 503 'engineered mutation' 150 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 7 ? ASN C 21 ? SER A 9 ASN A 23 1 ? 15 HELX_P HELX_P2 2 THR C 25 ? GLY C 37 ? THR A 27 GLY A 39 1 ? 13 HELX_P HELX_P3 3 ASN C 39 ? LYS C 55 ? ASN A 41 LYS A 57 1 ? 17 HELX_P HELX_P4 4 SER D 7 ? ASN D 21 ? SER B 109 ASN B 123 1 ? 15 HELX_P HELX_P5 5 THR D 25 ? GLY D 37 ? THR B 127 GLY B 139 1 ? 13 HELX_P HELX_P6 6 ASN D 39 ? LYS D 55 ? ASN B 141 LYS B 157 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 21 N1 ? ? C DT 202 D DA 321 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 21 N6 ? ? C DT 202 D DA 321 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 20 N1 ? ? C DT 203 D DA 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 20 N6 ? ? C DT 203 D DA 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? C DT 204 D DA 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? C DT 204 D DA 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? C DG 205 D DC 318 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? C DG 205 D DC 318 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 205 D DC 318 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 17 N1 ? ? C DC 206 D DG 317 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 17 O6 ? ? C DC 206 D DG 317 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 17 N2 ? ? C DC 206 D DG 317 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 16 N1 ? ? C DC 207 D DG 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 16 O6 ? ? C DC 207 D DG 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 16 N2 ? ? C DC 207 D DG 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 208 D DT 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 208 D DT 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 14 N1 ? ? C DT 209 D DA 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 14 N6 ? ? C DT 209 D DA 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 210 D DC 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 13 O2 ? ? C DG 210 D DC 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 13 N4 ? ? C DG 210 D DC 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 211 D DA 312 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 211 D DA 312 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 212 D DT 311 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 212 D DT 311 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 213 D DT 310 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 213 D DT 310 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 214 D DA 309 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 214 D DA 309 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 8 N1 ? ? C DT 215 D DA 308 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 8 N6 ? ? C DT 215 D DA 308 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 7 N3 ? ? C DA 216 D DT 307 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 7 O4 ? ? C DA 216 D DT 307 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 217 D DG 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 217 D DG 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 217 D DG 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DC 218 D DG 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DC 218 D DG 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DC 218 D DG 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 4 N1 ? ? C DT 219 D DA 304 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DT 19 O4 ? ? ? 1_555 B DA 4 N6 ? ? C DT 219 D DA 304 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DA 20 N1 ? ? ? 1_555 B DT 3 N3 ? ? C DA 220 D DT 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DA 20 N6 ? ? ? 1_555 B DT 3 O4 ? ? C DA 220 D DT 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 2 N3 ? ? C DA 221 D DT 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 2 O4 ? ? C DA 221 D DT 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 D _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 305 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 D _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 305 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 D _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 305 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.35 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.05 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC C 217 ? ? 0.070 'SIDE CHAIN' 2 1 DA D 301 ? ? 0.055 'SIDE CHAIN' 3 1 DG D 305 ? ? 0.083 'SIDE CHAIN' 4 1 DG D 306 ? ? 0.071 'SIDE CHAIN' 5 1 DT D 311 ? ? 0.062 'SIDE CHAIN' 6 1 DA D 314 ? ? 0.064 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 3 ? C ARG 1 2 1 Y 1 A PRO 4 ? C PRO 2 3 1 Y 1 A ARG 5 ? C ARG 3 4 1 Y 1 A THR 6 ? C THR 4 5 1 Y 1 B SER 159 ? D SER 57 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 DA OP3 O N N 58 DA P P N N 59 DA OP1 O N N 60 DA OP2 O N N 61 DA "O5'" O N N 62 DA "C5'" C N N 63 DA "C4'" C N R 64 DA "O4'" O N N 65 DA "C3'" C N S 66 DA "O3'" O N N 67 DA "C2'" C N N 68 DA "C1'" C N R 69 DA N9 N Y N 70 DA C8 C Y N 71 DA N7 N Y N 72 DA C5 C Y N 73 DA C6 C Y N 74 DA N6 N N N 75 DA N1 N Y N 76 DA C2 C Y N 77 DA N3 N Y N 78 DA C4 C Y N 79 DA HOP3 H N N 80 DA HOP2 H N N 81 DA "H5'" H N N 82 DA "H5''" H N N 83 DA "H4'" H N N 84 DA "H3'" H N N 85 DA "HO3'" H N N 86 DA "H2'" H N N 87 DA "H2''" H N N 88 DA "H1'" H N N 89 DA H8 H N N 90 DA H61 H N N 91 DA H62 H N N 92 DA H2 H N N 93 DC OP3 O N N 94 DC P P N N 95 DC OP1 O N N 96 DC OP2 O N N 97 DC "O5'" O N N 98 DC "C5'" C N N 99 DC "C4'" C N R 100 DC "O4'" O N N 101 DC "C3'" C N S 102 DC "O3'" O N N 103 DC "C2'" C N N 104 DC "C1'" C N R 105 DC N1 N N N 106 DC C2 C N N 107 DC O2 O N N 108 DC N3 N N N 109 DC C4 C N N 110 DC N4 N N N 111 DC C5 C N N 112 DC C6 C N N 113 DC HOP3 H N N 114 DC HOP2 H N N 115 DC "H5'" H N N 116 DC "H5''" H N N 117 DC "H4'" H N N 118 DC "H3'" H N N 119 DC "HO3'" H N N 120 DC "H2'" H N N 121 DC "H2''" H N N 122 DC "H1'" H N N 123 DC H41 H N N 124 DC H42 H N N 125 DC H5 H N N 126 DC H6 H N N 127 DG OP3 O N N 128 DG P P N N 129 DG OP1 O N N 130 DG OP2 O N N 131 DG "O5'" O N N 132 DG "C5'" C N N 133 DG "C4'" C N R 134 DG "O4'" O N N 135 DG "C3'" C N S 136 DG "O3'" O N N 137 DG "C2'" C N N 138 DG "C1'" C N R 139 DG N9 N Y N 140 DG C8 C Y N 141 DG N7 N Y N 142 DG C5 C Y N 143 DG C6 C N N 144 DG O6 O N N 145 DG N1 N N N 146 DG C2 C N N 147 DG N2 N N N 148 DG N3 N N N 149 DG C4 C Y N 150 DG HOP3 H N N 151 DG HOP2 H N N 152 DG "H5'" H N N 153 DG "H5''" H N N 154 DG "H4'" H N N 155 DG "H3'" H N N 156 DG "HO3'" H N N 157 DG "H2'" H N N 158 DG "H2''" H N N 159 DG "H1'" H N N 160 DG H8 H N N 161 DG H1 H N N 162 DG H21 H N N 163 DG H22 H N N 164 DT OP3 O N N 165 DT P P N N 166 DT OP1 O N N 167 DT OP2 O N N 168 DT "O5'" O N N 169 DT "C5'" C N N 170 DT "C4'" C N R 171 DT "O4'" O N N 172 DT "C3'" C N S 173 DT "O3'" O N N 174 DT "C2'" C N N 175 DT "C1'" C N R 176 DT N1 N N N 177 DT C2 C N N 178 DT O2 O N N 179 DT N3 N N N 180 DT C4 C N N 181 DT O4 O N N 182 DT C5 C N N 183 DT C7 C N N 184 DT C6 C N N 185 DT HOP3 H N N 186 DT HOP2 H N N 187 DT "H5'" H N N 188 DT "H5''" H N N 189 DT "H4'" H N N 190 DT "H3'" H N N 191 DT "HO3'" H N N 192 DT "H2'" H N N 193 DT "H2''" H N N 194 DT "H1'" H N N 195 DT H3 H N N 196 DT H71 H N N 197 DT H72 H N N 198 DT H73 H N N 199 DT H6 H N N 200 GLN N N N N 201 GLN CA C N S 202 GLN C C N N 203 GLN O O N N 204 GLN CB C N N 205 GLN CG C N N 206 GLN CD C N N 207 GLN OE1 O N N 208 GLN NE2 N N N 209 GLN OXT O N N 210 GLN H H N N 211 GLN H2 H N N 212 GLN HA H N N 213 GLN HB2 H N N 214 GLN HB3 H N N 215 GLN HG2 H N N 216 GLN HG3 H N N 217 GLN HE21 H N N 218 GLN HE22 H N N 219 GLN HXT H N N 220 GLU N N N N 221 GLU CA C N S 222 GLU C C N N 223 GLU O O N N 224 GLU CB C N N 225 GLU CG C N N 226 GLU CD C N N 227 GLU OE1 O N N 228 GLU OE2 O N N 229 GLU OXT O N N 230 GLU H H N N 231 GLU H2 H N N 232 GLU HA H N N 233 GLU HB2 H N N 234 GLU HB3 H N N 235 GLU HG2 H N N 236 GLU HG3 H N N 237 GLU HE2 H N N 238 GLU HXT H N N 239 GLY N N N N 240 GLY CA C N N 241 GLY C C N N 242 GLY O O N N 243 GLY OXT O N N 244 GLY H H N N 245 GLY H2 H N N 246 GLY HA2 H N N 247 GLY HA3 H N N 248 GLY HXT H N N 249 HOH O O N N 250 HOH H1 H N N 251 HOH H2 H N N 252 ILE N N N N 253 ILE CA C N S 254 ILE C C N N 255 ILE O O N N 256 ILE CB C N S 257 ILE CG1 C N N 258 ILE CG2 C N N 259 ILE CD1 C N N 260 ILE OXT O N N 261 ILE H H N N 262 ILE H2 H N N 263 ILE HA H N N 264 ILE HB H N N 265 ILE HG12 H N N 266 ILE HG13 H N N 267 ILE HG21 H N N 268 ILE HG22 H N N 269 ILE HG23 H N N 270 ILE HD11 H N N 271 ILE HD12 H N N 272 ILE HD13 H N N 273 ILE HXT H N N 274 LEU N N N N 275 LEU CA C N S 276 LEU C C N N 277 LEU O O N N 278 LEU CB C N N 279 LEU CG C N N 280 LEU CD1 C N N 281 LEU CD2 C N N 282 LEU OXT O N N 283 LEU H H N N 284 LEU H2 H N N 285 LEU HA H N N 286 LEU HB2 H N N 287 LEU HB3 H N N 288 LEU HG H N N 289 LEU HD11 H N N 290 LEU HD12 H N N 291 LEU HD13 H N N 292 LEU HD21 H N N 293 LEU HD22 H N N 294 LEU HD23 H N N 295 LEU HXT H N N 296 LYS N N N N 297 LYS CA C N S 298 LYS C C N N 299 LYS O O N N 300 LYS CB C N N 301 LYS CG C N N 302 LYS CD C N N 303 LYS CE C N N 304 LYS NZ N N N 305 LYS OXT O N N 306 LYS H H N N 307 LYS H2 H N N 308 LYS HA H N N 309 LYS HB2 H N N 310 LYS HB3 H N N 311 LYS HG2 H N N 312 LYS HG3 H N N 313 LYS HD2 H N N 314 LYS HD3 H N N 315 LYS HE2 H N N 316 LYS HE3 H N N 317 LYS HZ1 H N N 318 LYS HZ2 H N N 319 LYS HZ3 H N N 320 LYS HXT H N N 321 PHE N N N N 322 PHE CA C N S 323 PHE C C N N 324 PHE O O N N 325 PHE CB C N N 326 PHE CG C Y N 327 PHE CD1 C Y N 328 PHE CD2 C Y N 329 PHE CE1 C Y N 330 PHE CE2 C Y N 331 PHE CZ C Y N 332 PHE OXT O N N 333 PHE H H N N 334 PHE H2 H N N 335 PHE HA H N N 336 PHE HB2 H N N 337 PHE HB3 H N N 338 PHE HD1 H N N 339 PHE HD2 H N N 340 PHE HE1 H N N 341 PHE HE2 H N N 342 PHE HZ H N N 343 PHE HXT H N N 344 PRO N N N N 345 PRO CA C N S 346 PRO C C N N 347 PRO O O N N 348 PRO CB C N N 349 PRO CG C N N 350 PRO CD C N N 351 PRO OXT O N N 352 PRO H H N N 353 PRO HA H N N 354 PRO HB2 H N N 355 PRO HB3 H N N 356 PRO HG2 H N N 357 PRO HG3 H N N 358 PRO HD2 H N N 359 PRO HD3 H N N 360 PRO HXT H N N 361 SER N N N N 362 SER CA C N S 363 SER C C N N 364 SER O O N N 365 SER CB C N N 366 SER OG O N N 367 SER OXT O N N 368 SER H H N N 369 SER H2 H N N 370 SER HA H N N 371 SER HB2 H N N 372 SER HB3 H N N 373 SER HG H N N 374 SER HXT H N N 375 THR N N N N 376 THR CA C N S 377 THR C C N N 378 THR O O N N 379 THR CB C N R 380 THR OG1 O N N 381 THR CG2 C N N 382 THR OXT O N N 383 THR H H N N 384 THR H2 H N N 385 THR HA H N N 386 THR HB H N N 387 THR HG1 H N N 388 THR HG21 H N N 389 THR HG22 H N N 390 THR HG23 H N N 391 THR HXT H N N 392 TRP N N N N 393 TRP CA C N S 394 TRP C C N N 395 TRP O O N N 396 TRP CB C N N 397 TRP CG C Y N 398 TRP CD1 C Y N 399 TRP CD2 C Y N 400 TRP NE1 N Y N 401 TRP CE2 C Y N 402 TRP CE3 C Y N 403 TRP CZ2 C Y N 404 TRP CZ3 C Y N 405 TRP CH2 C Y N 406 TRP OXT O N N 407 TRP H H N N 408 TRP H2 H N N 409 TRP HA H N N 410 TRP HB2 H N N 411 TRP HB3 H N N 412 TRP HD1 H N N 413 TRP HE1 H N N 414 TRP HE3 H N N 415 TRP HZ2 H N N 416 TRP HZ3 H N N 417 TRP HH2 H N N 418 TRP HXT H N N 419 TYR N N N N 420 TYR CA C N S 421 TYR C C N N 422 TYR O O N N 423 TYR CB C N N 424 TYR CG C Y N 425 TYR CD1 C Y N 426 TYR CD2 C Y N 427 TYR CE1 C Y N 428 TYR CE2 C Y N 429 TYR CZ C Y N 430 TYR OH O N N 431 TYR OXT O N N 432 TYR H H N N 433 TYR H2 H N N 434 TYR HA H N N 435 TYR HB2 H N N 436 TYR HB3 H N N 437 TYR HD1 H N N 438 TYR HD2 H N N 439 TYR HE1 H N N 440 TYR HE2 H N N 441 TYR HH H N N 442 TYR HXT H N N 443 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 DA OP3 P sing N N 55 DA OP3 HOP3 sing N N 56 DA P OP1 doub N N 57 DA P OP2 sing N N 58 DA P "O5'" sing N N 59 DA OP2 HOP2 sing N N 60 DA "O5'" "C5'" sing N N 61 DA "C5'" "C4'" sing N N 62 DA "C5'" "H5'" sing N N 63 DA "C5'" "H5''" sing N N 64 DA "C4'" "O4'" sing N N 65 DA "C4'" "C3'" sing N N 66 DA "C4'" "H4'" sing N N 67 DA "O4'" "C1'" sing N N 68 DA "C3'" "O3'" sing N N 69 DA "C3'" "C2'" sing N N 70 DA "C3'" "H3'" sing N N 71 DA "O3'" "HO3'" sing N N 72 DA "C2'" "C1'" sing N N 73 DA "C2'" "H2'" sing N N 74 DA "C2'" "H2''" sing N N 75 DA "C1'" N9 sing N N 76 DA "C1'" "H1'" sing N N 77 DA N9 C8 sing Y N 78 DA N9 C4 sing Y N 79 DA C8 N7 doub Y N 80 DA C8 H8 sing N N 81 DA N7 C5 sing Y N 82 DA C5 C6 sing Y N 83 DA C5 C4 doub Y N 84 DA C6 N6 sing N N 85 DA C6 N1 doub Y N 86 DA N6 H61 sing N N 87 DA N6 H62 sing N N 88 DA N1 C2 sing Y N 89 DA C2 N3 doub Y N 90 DA C2 H2 sing N N 91 DA N3 C4 sing Y N 92 DC OP3 P sing N N 93 DC OP3 HOP3 sing N N 94 DC P OP1 doub N N 95 DC P OP2 sing N N 96 DC P "O5'" sing N N 97 DC OP2 HOP2 sing N N 98 DC "O5'" "C5'" sing N N 99 DC "C5'" "C4'" sing N N 100 DC "C5'" "H5'" sing N N 101 DC "C5'" "H5''" sing N N 102 DC "C4'" "O4'" sing N N 103 DC "C4'" "C3'" sing N N 104 DC "C4'" "H4'" sing N N 105 DC "O4'" "C1'" sing N N 106 DC "C3'" "O3'" sing N N 107 DC "C3'" "C2'" sing N N 108 DC "C3'" "H3'" sing N N 109 DC "O3'" "HO3'" sing N N 110 DC "C2'" "C1'" sing N N 111 DC "C2'" "H2'" sing N N 112 DC "C2'" "H2''" sing N N 113 DC "C1'" N1 sing N N 114 DC "C1'" "H1'" sing N N 115 DC N1 C2 sing N N 116 DC N1 C6 sing N N 117 DC C2 O2 doub N N 118 DC C2 N3 sing N N 119 DC N3 C4 doub N N 120 DC C4 N4 sing N N 121 DC C4 C5 sing N N 122 DC N4 H41 sing N N 123 DC N4 H42 sing N N 124 DC C5 C6 doub N N 125 DC C5 H5 sing N N 126 DC C6 H6 sing N N 127 DG OP3 P sing N N 128 DG OP3 HOP3 sing N N 129 DG P OP1 doub N N 130 DG P OP2 sing N N 131 DG P "O5'" sing N N 132 DG OP2 HOP2 sing N N 133 DG "O5'" "C5'" sing N N 134 DG "C5'" "C4'" sing N N 135 DG "C5'" "H5'" sing N N 136 DG "C5'" "H5''" sing N N 137 DG "C4'" "O4'" sing N N 138 DG "C4'" "C3'" sing N N 139 DG "C4'" "H4'" sing N N 140 DG "O4'" "C1'" sing N N 141 DG "C3'" "O3'" sing N N 142 DG "C3'" "C2'" sing N N 143 DG "C3'" "H3'" sing N N 144 DG "O3'" "HO3'" sing N N 145 DG "C2'" "C1'" sing N N 146 DG "C2'" "H2'" sing N N 147 DG "C2'" "H2''" sing N N 148 DG "C1'" N9 sing N N 149 DG "C1'" "H1'" sing N N 150 DG N9 C8 sing Y N 151 DG N9 C4 sing Y N 152 DG C8 N7 doub Y N 153 DG C8 H8 sing N N 154 DG N7 C5 sing Y N 155 DG C5 C6 sing N N 156 DG C5 C4 doub Y N 157 DG C6 O6 doub N N 158 DG C6 N1 sing N N 159 DG N1 C2 sing N N 160 DG N1 H1 sing N N 161 DG C2 N2 sing N N 162 DG C2 N3 doub N N 163 DG N2 H21 sing N N 164 DG N2 H22 sing N N 165 DG N3 C4 sing N N 166 DT OP3 P sing N N 167 DT OP3 HOP3 sing N N 168 DT P OP1 doub N N 169 DT P OP2 sing N N 170 DT P "O5'" sing N N 171 DT OP2 HOP2 sing N N 172 DT "O5'" "C5'" sing N N 173 DT "C5'" "C4'" sing N N 174 DT "C5'" "H5'" sing N N 175 DT "C5'" "H5''" sing N N 176 DT "C4'" "O4'" sing N N 177 DT "C4'" "C3'" sing N N 178 DT "C4'" "H4'" sing N N 179 DT "O4'" "C1'" sing N N 180 DT "C3'" "O3'" sing N N 181 DT "C3'" "C2'" sing N N 182 DT "C3'" "H3'" sing N N 183 DT "O3'" "HO3'" sing N N 184 DT "C2'" "C1'" sing N N 185 DT "C2'" "H2'" sing N N 186 DT "C2'" "H2''" sing N N 187 DT "C1'" N1 sing N N 188 DT "C1'" "H1'" sing N N 189 DT N1 C2 sing N N 190 DT N1 C6 sing N N 191 DT C2 O2 doub N N 192 DT C2 N3 sing N N 193 DT N3 C4 sing N N 194 DT N3 H3 sing N N 195 DT C4 O4 doub N N 196 DT C4 C5 sing N N 197 DT C5 C7 sing N N 198 DT C5 C6 doub N N 199 DT C7 H71 sing N N 200 DT C7 H72 sing N N 201 DT C7 H73 sing N N 202 DT C6 H6 sing N N 203 GLN N CA sing N N 204 GLN N H sing N N 205 GLN N H2 sing N N 206 GLN CA C sing N N 207 GLN CA CB sing N N 208 GLN CA HA sing N N 209 GLN C O doub N N 210 GLN C OXT sing N N 211 GLN CB CG sing N N 212 GLN CB HB2 sing N N 213 GLN CB HB3 sing N N 214 GLN CG CD sing N N 215 GLN CG HG2 sing N N 216 GLN CG HG3 sing N N 217 GLN CD OE1 doub N N 218 GLN CD NE2 sing N N 219 GLN NE2 HE21 sing N N 220 GLN NE2 HE22 sing N N 221 GLN OXT HXT sing N N 222 GLU N CA sing N N 223 GLU N H sing N N 224 GLU N H2 sing N N 225 GLU CA C sing N N 226 GLU CA CB sing N N 227 GLU CA HA sing N N 228 GLU C O doub N N 229 GLU C OXT sing N N 230 GLU CB CG sing N N 231 GLU CB HB2 sing N N 232 GLU CB HB3 sing N N 233 GLU CG CD sing N N 234 GLU CG HG2 sing N N 235 GLU CG HG3 sing N N 236 GLU CD OE1 doub N N 237 GLU CD OE2 sing N N 238 GLU OE2 HE2 sing N N 239 GLU OXT HXT sing N N 240 GLY N CA sing N N 241 GLY N H sing N N 242 GLY N H2 sing N N 243 GLY CA C sing N N 244 GLY CA HA2 sing N N 245 GLY CA HA3 sing N N 246 GLY C O doub N N 247 GLY C OXT sing N N 248 GLY OXT HXT sing N N 249 HOH O H1 sing N N 250 HOH O H2 sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 PHE N CA sing N N 318 PHE N H sing N N 319 PHE N H2 sing N N 320 PHE CA C sing N N 321 PHE CA CB sing N N 322 PHE CA HA sing N N 323 PHE C O doub N N 324 PHE C OXT sing N N 325 PHE CB CG sing N N 326 PHE CB HB2 sing N N 327 PHE CB HB3 sing N N 328 PHE CG CD1 doub Y N 329 PHE CG CD2 sing Y N 330 PHE CD1 CE1 sing Y N 331 PHE CD1 HD1 sing N N 332 PHE CD2 CE2 doub Y N 333 PHE CD2 HD2 sing N N 334 PHE CE1 CZ doub Y N 335 PHE CE1 HE1 sing N N 336 PHE CE2 CZ sing Y N 337 PHE CE2 HE2 sing N N 338 PHE CZ HZ sing N N 339 PHE OXT HXT sing N N 340 PRO N CA sing N N 341 PRO N CD sing N N 342 PRO N H sing N N 343 PRO CA C sing N N 344 PRO CA CB sing N N 345 PRO CA HA sing N N 346 PRO C O doub N N 347 PRO C OXT sing N N 348 PRO CB CG sing N N 349 PRO CB HB2 sing N N 350 PRO CB HB3 sing N N 351 PRO CG CD sing N N 352 PRO CG HG2 sing N N 353 PRO CG HG3 sing N N 354 PRO CD HD2 sing N N 355 PRO CD HD3 sing N N 356 PRO OXT HXT sing N N 357 SER N CA sing N N 358 SER N H sing N N 359 SER N H2 sing N N 360 SER CA C sing N N 361 SER CA CB sing N N 362 SER CA HA sing N N 363 SER C O doub N N 364 SER C OXT sing N N 365 SER CB OG sing N N 366 SER CB HB2 sing N N 367 SER CB HB3 sing N N 368 SER OG HG sing N N 369 SER OXT HXT sing N N 370 THR N CA sing N N 371 THR N H sing N N 372 THR N H2 sing N N 373 THR CA C sing N N 374 THR CA CB sing N N 375 THR CA HA sing N N 376 THR C O doub N N 377 THR C OXT sing N N 378 THR CB OG1 sing N N 379 THR CB CG2 sing N N 380 THR CB HB sing N N 381 THR OG1 HG1 sing N N 382 THR CG2 HG21 sing N N 383 THR CG2 HG22 sing N N 384 THR CG2 HG23 sing N N 385 THR OXT HXT sing N N 386 TRP N CA sing N N 387 TRP N H sing N N 388 TRP N H2 sing N N 389 TRP CA C sing N N 390 TRP CA CB sing N N 391 TRP CA HA sing N N 392 TRP C O doub N N 393 TRP C OXT sing N N 394 TRP CB CG sing N N 395 TRP CB HB2 sing N N 396 TRP CB HB3 sing N N 397 TRP CG CD1 doub Y N 398 TRP CG CD2 sing Y N 399 TRP CD1 NE1 sing Y N 400 TRP CD1 HD1 sing N N 401 TRP CD2 CE2 doub Y N 402 TRP CD2 CE3 sing Y N 403 TRP NE1 CE2 sing Y N 404 TRP NE1 HE1 sing N N 405 TRP CE2 CZ2 sing Y N 406 TRP CE3 CZ3 doub Y N 407 TRP CE3 HE3 sing N N 408 TRP CZ2 CH2 doub Y N 409 TRP CZ2 HZ2 sing N N 410 TRP CZ3 CH2 sing Y N 411 TRP CZ3 HZ3 sing N N 412 TRP CH2 HH2 sing N N 413 TRP OXT HXT sing N N 414 TYR N CA sing N N 415 TYR N H sing N N 416 TYR N H2 sing N N 417 TYR CA C sing N N 418 TYR CA CB sing N N 419 TYR CA HA sing N N 420 TYR C O doub N N 421 TYR C OXT sing N N 422 TYR CB CG sing N N 423 TYR CB HB2 sing N N 424 TYR CB HB3 sing N N 425 TYR CG CD1 doub Y N 426 TYR CG CD2 sing Y N 427 TYR CD1 CE1 sing Y N 428 TYR CD1 HD1 sing N N 429 TYR CD2 CE2 doub Y N 430 TYR CD2 HD2 sing N N 431 TYR CE1 CZ doub Y N 432 TYR CE1 HE1 sing N N 433 TYR CE2 CZ sing Y N 434 TYR CE2 HE2 sing N N 435 TYR CZ OH sing N N 436 TYR OH HH sing N N 437 TYR OXT HXT sing N N 438 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DU0 'double helix' 1DU0 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 21 1_555 -0.125 -0.316 0.138 -4.251 -9.917 -0.097 1 C_DT202:DA321_D C 202 ? D 321 ? 20 1 1 A DT 3 1_555 B DA 20 1_555 0.306 -0.264 0.281 -5.355 -2.372 8.248 2 C_DT203:DA320_D C 203 ? D 320 ? 20 1 1 A DT 4 1_555 B DA 19 1_555 0.293 -0.277 -0.061 1.426 -12.409 0.553 3 C_DT204:DA319_D C 204 ? D 319 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 -0.466 -0.305 -0.359 -8.877 -1.959 -2.372 4 C_DG205:DC318_D C 205 ? D 318 ? 19 1 1 A DC 6 1_555 B DG 17 1_555 0.106 -0.219 -0.083 3.114 -4.711 5.229 5 C_DC206:DG317_D C 206 ? D 317 ? 19 1 1 A DC 7 1_555 B DG 16 1_555 0.021 -0.350 -0.130 5.417 -10.558 0.761 6 C_DC207:DG316_D C 207 ? D 316 ? 19 1 1 A DA 8 1_555 B DT 15 1_555 -0.688 -0.411 -0.047 -3.221 -10.094 2.010 7 C_DA208:DT315_D C 208 ? D 315 ? 20 1 1 A DT 9 1_555 B DA 14 1_555 0.000 -0.038 -0.125 -0.889 -15.515 3.392 8 C_DT209:DA314_D C 209 ? D 314 ? 20 1 1 A DG 10 1_555 B DC 13 1_555 -0.476 -0.030 -0.066 -4.718 -3.308 3.298 9 C_DG210:DC313_D C 210 ? D 313 ? 19 1 1 A DT 11 1_555 B DA 12 1_555 -0.126 -0.129 -0.039 6.306 -4.211 8.225 10 C_DT211:DA312_D C 211 ? D 312 ? 20 1 1 A DA 12 1_555 B DT 11 1_555 0.059 -0.209 -0.023 4.232 -21.626 4.996 11 C_DA212:DT311_D C 212 ? D 311 ? 20 1 1 A DA 13 1_555 B DT 10 1_555 0.252 -0.110 0.076 -3.656 -15.422 2.076 12 C_DA213:DT310_D C 213 ? D 310 ? 20 1 1 A DT 14 1_555 B DA 9 1_555 0.035 -0.037 0.070 -2.464 -12.796 3.410 13 C_DT214:DA309_D C 214 ? D 309 ? 20 1 1 A DT 15 1_555 B DA 8 1_555 0.181 -0.187 -0.003 -3.056 -13.719 4.323 14 C_DT215:DA308_D C 215 ? D 308 ? 20 1 1 A DA 16 1_555 B DT 7 1_555 0.121 -0.059 0.404 -1.973 -4.258 -0.233 15 C_DA216:DT307_D C 216 ? D 307 ? 20 1 1 A DC 17 1_555 B DG 6 1_555 0.080 -0.002 0.048 13.217 -3.937 0.951 16 C_DC217:DG306_D C 217 ? D 306 ? 19 1 1 A DC 18 1_555 B DG 5 1_555 0.444 -0.093 -0.002 -2.102 -6.106 1.542 17 C_DC218:DG305_D C 218 ? D 305 ? 19 1 1 A DT 19 1_555 B DA 4 1_555 0.020 -0.107 -0.087 2.879 -6.217 0.352 18 C_DT219:DA304_D C 219 ? D 304 ? 20 1 1 A DA 20 1_555 B DT 3 1_555 -0.191 -0.158 -0.198 -0.671 -9.317 0.784 19 C_DA220:DT303_D C 220 ? D 303 ? 20 1 1 A DA 21 1_555 B DT 2 1_555 0.016 -0.243 -0.170 2.611 -14.575 2.654 20 C_DA221:DT302_D C 221 ? D 302 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 21 1_555 A DT 3 1_555 B DA 20 1_555 1.678 0.637 3.338 2.611 5.574 38.854 0.251 -2.168 3.494 8.315 -3.895 39.320 1 CC_DT202DT203:DA320DA321_DD C 202 ? D 321 ? C 203 ? D 320 ? 1 A DT 3 1_555 B DA 20 1_555 A DT 4 1_555 B DA 19 1_555 -0.857 0.031 3.077 0.686 2.731 33.385 -0.368 1.593 3.052 4.743 -1.191 33.500 2 CC_DT203DT204:DA319DA320_DD C 203 ? D 320 ? C 204 ? D 319 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 0.523 -0.077 3.519 3.806 6.496 28.853 -1.619 -0.155 3.458 12.764 -7.478 29.799 3 CC_DT204DG205:DC318DA319_DD C 204 ? D 319 ? C 205 ? D 318 ? 1 A DG 5 1_555 B DC 18 1_555 A DC 6 1_555 B DG 17 1_555 -0.170 0.240 3.051 -1.909 2.073 33.342 0.096 0.000 3.065 3.605 3.320 33.457 4 CC_DG205DC206:DG317DC318_DD C 205 ? D 318 ? C 206 ? D 317 ? 1 A DC 6 1_555 B DG 17 1_555 A DC 7 1_555 B DG 16 1_555 -0.521 0.220 3.322 0.470 -0.805 33.986 0.507 0.967 3.309 -1.376 -0.804 33.999 5 CC_DC206DC207:DG316DG317_DD C 206 ? D 317 ? C 207 ? D 316 ? 1 A DC 7 1_555 B DG 16 1_555 A DA 8 1_555 B DT 15 1_555 0.198 0.718 3.524 -0.152 -2.060 41.503 1.247 -0.296 3.485 -2.905 0.215 41.552 6 CC_DC207DA208:DT315DG316_DD C 207 ? D 316 ? C 208 ? D 315 ? 1 A DA 8 1_555 B DT 15 1_555 A DT 9 1_555 B DA 14 1_555 -0.376 -0.102 3.187 -0.863 0.544 35.376 -0.246 0.495 3.193 0.896 1.419 35.390 7 CC_DA208DT209:DA314DT315_DD C 208 ? D 315 ? C 209 ? D 314 ? 1 A DT 9 1_555 B DA 14 1_555 A DG 10 1_555 B DC 13 1_555 0.339 0.110 3.430 -2.285 -1.386 39.542 0.332 -0.780 3.400 -2.046 3.373 39.629 8 CC_DT209DG210:DC313DA314_DD C 209 ? D 314 ? C 210 ? D 313 ? 1 A DG 10 1_555 B DC 13 1_555 A DT 11 1_555 B DA 12 1_555 -0.154 -0.233 3.087 0.069 3.366 24.964 -1.460 0.373 3.029 7.741 -0.159 25.187 9 CC_DG210DT211:DA312DC313_DD C 210 ? D 313 ? C 211 ? D 312 ? 1 A DT 11 1_555 B DA 12 1_555 A DA 12 1_555 B DT 11 1_555 -0.782 1.166 3.315 0.073 1.363 42.120 1.479 1.095 3.348 1.896 -0.101 42.141 10 CC_DT211DA212:DT311DA312_DD C 211 ? D 312 ? C 212 ? D 311 ? 1 A DA 12 1_555 B DT 11 1_555 A DA 13 1_555 B DT 10 1_555 0.307 -0.311 3.370 -1.711 1.178 36.785 -0.656 -0.725 3.342 1.865 2.709 36.842 11 CC_DA212DA213:DT310DT311_DD C 212 ? D 311 ? C 213 ? D 310 ? 1 A DA 13 1_555 B DT 10 1_555 A DT 14 1_555 B DA 9 1_555 -0.241 -0.865 3.207 1.170 -2.513 32.708 -1.104 0.626 3.252 -4.453 -2.072 32.822 12 CC_DA213DT214:DA309DT310_DD C 213 ? D 310 ? C 214 ? D 309 ? 1 A DT 14 1_555 B DA 9 1_555 A DT 15 1_555 B DA 8 1_555 0.200 -0.226 3.165 1.799 1.809 34.834 -0.641 -0.070 3.156 3.017 -3.000 34.925 13 CC_DT214DT215:DA308DA309_DD C 214 ? D 309 ? C 215 ? D 308 ? 1 A DT 15 1_555 B DA 8 1_555 A DA 16 1_555 B DT 7 1_555 0.153 -0.678 3.162 -3.124 7.424 29.455 -2.678 -0.876 2.879 14.268 6.004 30.513 14 CC_DT215DA216:DT307DA308_DD C 215 ? D 308 ? C 216 ? D 307 ? 1 A DA 16 1_555 B DT 7 1_555 A DC 17 1_555 B DG 6 1_555 0.767 -0.806 2.973 1.521 5.028 26.563 -2.859 -1.295 2.814 10.808 -3.270 27.069 15 CC_DA216DC217:DG306DT307_DD C 216 ? D 307 ? C 217 ? D 306 ? 1 A DC 17 1_555 B DG 6 1_555 A DC 18 1_555 B DG 5 1_555 -0.650 -0.879 3.585 -2.622 1.437 40.832 -1.430 0.614 3.586 2.056 3.752 40.936 16 CC_DC217DC218:DG305DG306_DD C 217 ? D 306 ? C 218 ? D 305 ? 1 A DC 18 1_555 B DG 5 1_555 A DT 19 1_555 B DA 4 1_555 -0.028 -0.132 3.123 3.718 8.426 31.992 -1.570 0.639 2.971 14.906 -6.577 33.258 17 CC_DC218DT219:DA304DG305_DD C 218 ? D 305 ? C 219 ? D 304 ? 1 A DT 19 1_555 B DA 4 1_555 A DA 20 1_555 B DT 3 1_555 -0.046 -0.597 3.406 0.797 8.270 27.436 -3.106 0.275 3.095 16.949 -1.633 28.643 18 CC_DT219DA220:DT303DA304_DD C 219 ? D 304 ? C 220 ? D 303 ? 1 A DA 20 1_555 B DT 3 1_555 A DA 21 1_555 B DT 2 1_555 0.144 -0.086 3.230 -0.268 4.698 35.113 -0.822 -0.276 3.191 7.744 0.442 35.417 19 CC_DA220DA221:DT302DT303_DD C 220 ? D 303 ? C 221 ? D 302 ? # _atom_sites.entry_id 1DU0 _atom_sites.fract_transf_matrix[1][1] 0.007880 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004531 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021954 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016106 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_