data_1DUF
# 
_entry.id   1DUF 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.392 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1DUF         pdb_00001duf 10.2210/pdb1duf/pdb 
RCSB  RCSB010377   ?            ?                   
WWPDB D_1000010377 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2000-07-14 
2 'Structure model' 1 1 2008-04-27 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2022-02-16 
5 'Structure model' 1 4 2024-05-22 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Database references'       
4 4 'Structure model' 'Derived calculations'      
5 5 'Structure model' 'Data collection'           
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' database_2            
2 4 'Structure model' pdbx_struct_assembly  
3 4 'Structure model' pdbx_struct_oper_list 
4 5 'Structure model' chem_comp_atom        
5 5 'Structure model' chem_comp_bond        
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1DUF 
_pdbx_database_status.recvd_initial_deposition_date   2000-01-17 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_mr                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.details 
_pdbx_database_related.content_type 
PDB 1BNA 'Drew and Dickerson Dodecamer'                 unspecified 
PDB 355D 'High resolution Drew and Dickerson Dodecamer' unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Tjandra, N.'  1 
'Tate, S.'     2 
'Ono, A.'      3 
'Kainosho, M.' 4 
'Bax, A.'      5 
# 
_citation.id                        primary 
_citation.title                     'The NMR Structure of a DNA Dodecamer in an Aqueous Dilute Liquid Crystalline Phase' 
_citation.journal_abbrev            J.Am.Chem.Soc. 
_citation.journal_volume            122 
_citation.page_first                6190 
_citation.page_last                 6200 
_citation.year                      2000 
_citation.journal_id_ASTM           JACSAT 
_citation.country                   US 
_citation.journal_id_ISSN           0002-7863 
_citation.journal_id_CSD            0004 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   -1 
_citation.pdbx_database_id_DOI      10.1021/ja000324n 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Tjandra, N.'  1 ? 
primary 'Tate, S.'     2 ? 
primary 'Ono, A.'      3 ? 
primary 'Kainosho, M.' 4 ? 
primary 'Bax, A.'      5 ? 
# 
_entity.id                         1 
_entity.type                       polymer 
_entity.src_method                 syn 
_entity.pdbx_description           
;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
;
_entity.formula_weight             3663.392 
_entity.pdbx_number_of_molecules   2 
_entity.pdbx_ec                    ? 
_entity.pdbx_mutation              ? 
_entity.pdbx_fragment              ? 
_entity.details                    ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGAATTCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  DC n 
1 4  DG n 
1 5  DA n 
1 6  DA n 
1 7  DT n 
1 8  DT n 
1 9  DC n 
1 10 DG n 
1 11 DC n 
1 12 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC C A . n 
A 1 2  DG 2  2  2  DG G A . n 
A 1 3  DC 3  3  3  DC C A . n 
A 1 4  DG 4  4  4  DG G A . n 
A 1 5  DA 5  5  5  DA A A . n 
A 1 6  DA 6  6  6  DA A A . n 
A 1 7  DT 7  7  7  DT T A . n 
A 1 8  DT 8  8  8  DT T A . n 
A 1 9  DC 9  9  9  DC C A . n 
A 1 10 DG 10 10 10 DG G A . n 
A 1 11 DC 11 11 11 DC C A . n 
A 1 12 DG 12 12 12 DG G A . n 
B 1 1  DC 1  13 13 DC C B . n 
B 1 2  DG 2  14 14 DG G B . n 
B 1 3  DC 3  15 15 DC C B . n 
B 1 4  DG 4  16 16 DG G B . n 
B 1 5  DA 5  17 17 DA A B . n 
B 1 6  DA 6  18 18 DA A B . n 
B 1 7  DT 7  19 19 DT T B . n 
B 1 8  DT 8  20 20 DT T B . n 
B 1 9  DC 9  21 21 DC C B . n 
B 1 10 DG 10 22 22 DG G B . n 
B 1 11 DC 11 23 23 DC C B . n 
B 1 12 DG 12 24 24 DG G B . n 
# 
_cell.entry_id           1DUF 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1DUF 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
_exptl.entry_id          1DUF 
_exptl.method            'SOLUTION NMR' 
_exptl.crystals_number   ? 
# 
_database_PDB_matrix.entry_id          1DUF 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1DUF 
_struct.title                     'THE NMR STRUCTURE OF DNA DODECAMER DETERMINED IN AQUEOUS DILUTE LIQUID CRYSTALLINE PHASE' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1DUF 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-DNA, DOUBLE HELIX, DIPOLAR COUPLING, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1DUF 
_struct_ref.pdbx_db_accession          1DUF 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1DUF A 1 ? 12 ? 1DUF 1  ? 12 ? 1  12 
2 1 1DUF B 1 ? 12 ? 1DUF 13 ? 24 ? 13 24 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DG 2  N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DG 2  N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DG 2  O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DC 3  N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DC 3  N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DC 3  O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DG 4  N1 ? ? ? 1_555 B DC 9  N3 ? ? A DG 4  B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DG 4  N2 ? ? ? 1_555 B DC 9  O2 ? ? A DG 4  B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DG 4  O6 ? ? ? 1_555 B DC 9  N4 ? ? A DG 4  B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DA 5  N1 ? ? ? 1_555 B DT 8  N3 ? ? A DA 5  B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DA 5  N6 ? ? ? 1_555 B DT 8  O4 ? ? A DA 5  B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DA 6  N1 ? ? ? 1_555 B DT 7  N3 ? ? A DA 6  B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DA 6  N6 ? ? ? 1_555 B DT 7  O4 ? ? A DA 6  B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DT 7  N3 ? ? ? 1_555 B DA 6  N1 ? ? A DT 7  B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DT 7  O4 ? ? ? 1_555 B DA 6  N6 ? ? A DT 7  B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A DT 8  N3 ? ? ? 1_555 B DA 5  N1 ? ? A DT 8  B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A DT 8  O4 ? ? ? 1_555 B DA 5  N6 ? ? A DT 8  B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A DC 9  N3 ? ? ? 1_555 B DG 4  N1 ? ? A DC 9  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? A DC 9  N4 ? ? ? 1_555 B DG 4  O6 ? ? A DC 9  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog23 hydrog ? ? A DC 9  O2 ? ? ? 1_555 B DG 4  N2 ? ? A DC 9  B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3  N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3  O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3  N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2  N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2  O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2  N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1  N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1  O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1  N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_pdbx_validate_close_contact.id 
_pdbx_validate_close_contact.PDB_model_num 
_pdbx_validate_close_contact.auth_atom_id_1 
_pdbx_validate_close_contact.auth_asym_id_1 
_pdbx_validate_close_contact.auth_comp_id_1 
_pdbx_validate_close_contact.auth_seq_id_1 
_pdbx_validate_close_contact.PDB_ins_code_1 
_pdbx_validate_close_contact.label_alt_id_1 
_pdbx_validate_close_contact.auth_atom_id_2 
_pdbx_validate_close_contact.auth_asym_id_2 
_pdbx_validate_close_contact.auth_comp_id_2 
_pdbx_validate_close_contact.auth_seq_id_2 
_pdbx_validate_close_contact.PDB_ins_code_2 
_pdbx_validate_close_contact.label_alt_id_2 
_pdbx_validate_close_contact.dist 
1  1 O2  A DC 11 ? ? H21 B DG 14 ? ? 1.55 
2  1 H21 A DG 2  ? ? O2  B DC 23 ? ? 1.55 
3  2 H21 A DG 2  ? ? O2  B DC 23 ? ? 1.55 
4  2 O2  A DC 11 ? ? H21 B DG 14 ? ? 1.55 
5  2 O6  A DG 12 ? ? H41 B DC 13 ? ? 1.59 
6  3 O2  A DC 11 ? ? H21 B DG 14 ? ? 1.60 
7  3 H21 A DG 2  ? ? O2  B DC 23 ? ? 1.60 
8  4 O2  A DC 11 ? ? H21 B DG 14 ? ? 1.56 
9  5 O2  A DC 11 ? ? H21 B DG 14 ? ? 1.55 
10 5 H21 A DG 2  ? ? O2  B DC 23 ? ? 1.55 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1   1 "C4'" A DC 1  ? ? "C3'" A DC 1  ? ? "C2'" A DC 1  ? ? 109.91 103.10 6.81 0.90 N 
2   1 "C4'" A DG 2  ? ? "C3'" A DG 2  ? ? "C2'" A DG 2  ? ? 109.08 103.10 5.98 0.90 N 
3   1 "C4'" A DC 3  ? ? "C3'" A DC 3  ? ? "C2'" A DC 3  ? ? 109.98 103.10 6.88 0.90 N 
4   1 "C4'" A DA 5  ? ? "C3'" A DA 5  ? ? "C2'" A DA 5  ? ? 109.02 103.10 5.92 0.90 N 
5   1 "C4'" A DA 6  ? ? "C3'" A DA 6  ? ? "C2'" A DA 6  ? ? 109.30 103.10 6.20 0.90 N 
6   1 "C4'" A DT 7  ? ? "C3'" A DT 7  ? ? "C2'" A DT 7  ? ? 109.67 103.10 6.57 0.90 N 
7   1 "C4'" A DT 8  ? ? "C3'" A DT 8  ? ? "C2'" A DT 8  ? ? 109.75 103.10 6.65 0.90 N 
8   1 "C4'" A DC 9  ? ? "C3'" A DC 9  ? ? "C2'" A DC 9  ? ? 109.90 103.10 6.80 0.90 N 
9   1 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 109.42 103.10 6.32 0.90 N 
10  1 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 109.55 103.10 6.45 0.90 N 
11  1 "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? 109.69 103.10 6.59 0.90 N 
12  1 "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 109.92 103.10 6.82 0.90 N 
13  1 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 109.11 103.10 6.01 0.90 N 
14  1 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 109.97 103.10 6.87 0.90 N 
15  1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 109.00 103.10 5.90 0.90 N 
16  1 "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 109.34 103.10 6.24 0.90 N 
17  1 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 109.67 103.10 6.57 0.90 N 
18  1 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 109.71 103.10 6.61 0.90 N 
19  1 "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? 109.85 103.10 6.75 0.90 N 
20  1 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 109.54 103.10 6.44 0.90 N 
21  1 "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 109.53 103.10 6.43 0.90 N 
22  1 "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? 109.75 103.10 6.65 0.90 N 
23  2 "C4'" A DC 1  ? ? "C3'" A DC 1  ? ? "C2'" A DC 1  ? ? 109.92 103.10 6.82 0.90 N 
24  2 "C4'" A DG 2  ? ? "C3'" A DG 2  ? ? "C2'" A DG 2  ? ? 109.05 103.10 5.95 0.90 N 
25  2 "C4'" A DC 3  ? ? "C3'" A DC 3  ? ? "C2'" A DC 3  ? ? 109.88 103.10 6.78 0.90 N 
26  2 "C4'" A DA 5  ? ? "C3'" A DA 5  ? ? "C2'" A DA 5  ? ? 108.95 103.10 5.85 0.90 N 
27  2 "C4'" A DA 6  ? ? "C3'" A DA 6  ? ? "C2'" A DA 6  ? ? 109.36 103.10 6.26 0.90 N 
28  2 "C4'" A DT 7  ? ? "C3'" A DT 7  ? ? "C2'" A DT 7  ? ? 109.60 103.10 6.50 0.90 N 
29  2 "C4'" A DT 8  ? ? "C3'" A DT 8  ? ? "C2'" A DT 8  ? ? 109.73 103.10 6.63 0.90 N 
30  2 "C4'" A DC 9  ? ? "C3'" A DC 9  ? ? "C2'" A DC 9  ? ? 109.88 103.10 6.78 0.90 N 
31  2 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 109.50 103.10 6.40 0.90 N 
32  2 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 109.75 103.10 6.65 0.90 N 
33  2 "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? 109.84 103.10 6.74 0.90 N 
34  2 "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 110.01 103.10 6.91 0.90 N 
35  2 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 108.94 103.10 5.84 0.90 N 
36  2 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 109.88 103.10 6.78 0.90 N 
37  2 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 109.02 103.10 5.92 0.90 N 
38  2 "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 109.34 103.10 6.24 0.90 N 
39  2 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 109.63 103.10 6.53 0.90 N 
40  2 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 109.75 103.10 6.65 0.90 N 
41  2 "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? 109.83 103.10 6.73 0.90 N 
42  2 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 109.59 103.10 6.49 0.90 N 
43  2 "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 109.64 103.10 6.54 0.90 N 
44  2 "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? 109.84 103.10 6.74 0.90 N 
45  3 "C4'" A DC 1  ? ? "C3'" A DC 1  ? ? "C2'" A DC 1  ? ? 109.88 103.10 6.78 0.90 N 
46  3 "C4'" A DG 2  ? ? "C3'" A DG 2  ? ? "C2'" A DG 2  ? ? 109.08 103.10 5.98 0.90 N 
47  3 "C4'" A DC 3  ? ? "C3'" A DC 3  ? ? "C2'" A DC 3  ? ? 109.99 103.10 6.89 0.90 N 
48  3 "C4'" A DA 5  ? ? "C3'" A DA 5  ? ? "C2'" A DA 5  ? ? 108.83 103.10 5.73 0.90 N 
49  3 "C4'" A DA 6  ? ? "C3'" A DA 6  ? ? "C2'" A DA 6  ? ? 109.16 103.10 6.06 0.90 N 
50  3 "C4'" A DT 7  ? ? "C3'" A DT 7  ? ? "C2'" A DT 7  ? ? 109.78 103.10 6.68 0.90 N 
51  3 "C4'" A DT 8  ? ? "C3'" A DT 8  ? ? "C2'" A DT 8  ? ? 109.80 103.10 6.70 0.90 N 
52  3 "C4'" A DC 9  ? ? "C3'" A DC 9  ? ? "C2'" A DC 9  ? ? 110.12 103.10 7.02 0.90 N 
53  3 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 109.51 103.10 6.41 0.90 N 
54  3 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 109.49 103.10 6.39 0.90 N 
55  3 "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? 109.74 103.10 6.64 0.90 N 
56  3 "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 109.85 103.10 6.75 0.90 N 
57  3 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 109.03 103.10 5.93 0.90 N 
58  3 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 109.93 103.10 6.83 0.90 N 
59  3 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 108.87 103.10 5.77 0.90 N 
60  3 "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 109.15 103.10 6.05 0.90 N 
61  3 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 109.76 103.10 6.66 0.90 N 
62  3 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 109.75 103.10 6.65 0.90 N 
63  3 "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? 110.17 103.10 7.07 0.90 N 
64  3 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 109.53 103.10 6.43 0.90 N 
65  3 "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 109.53 103.10 6.43 0.90 N 
66  3 "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? 109.75 103.10 6.65 0.90 N 
67  4 "C4'" A DC 1  ? ? "C3'" A DC 1  ? ? "C2'" A DC 1  ? ? 109.72 103.10 6.62 0.90 N 
68  4 "C4'" A DG 2  ? ? "C3'" A DG 2  ? ? "C2'" A DG 2  ? ? 109.03 103.10 5.93 0.90 N 
69  4 "C4'" A DC 3  ? ? "C3'" A DC 3  ? ? "C2'" A DC 3  ? ? 109.95 103.10 6.85 0.90 N 
70  4 "C4'" A DA 5  ? ? "C3'" A DA 5  ? ? "C2'" A DA 5  ? ? 108.90 103.10 5.80 0.90 N 
71  4 "C4'" A DA 6  ? ? "C3'" A DA 6  ? ? "C2'" A DA 6  ? ? 109.28 103.10 6.18 0.90 N 
72  4 "C4'" A DT 7  ? ? "C3'" A DT 7  ? ? "C2'" A DT 7  ? ? 109.75 103.10 6.65 0.90 N 
73  4 "C4'" A DT 8  ? ? "C3'" A DT 8  ? ? "C2'" A DT 8  ? ? 109.73 103.10 6.63 0.90 N 
74  4 "C4'" A DC 9  ? ? "C3'" A DC 9  ? ? "C2'" A DC 9  ? ? 109.88 103.10 6.78 0.90 N 
75  4 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 109.46 103.10 6.36 0.90 N 
76  4 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 109.56 103.10 6.46 0.90 N 
77  4 "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? 109.74 103.10 6.64 0.90 N 
78  4 "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 109.88 103.10 6.78 0.90 N 
79  4 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 109.11 103.10 6.01 0.90 N 
80  4 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 109.90 103.10 6.80 0.90 N 
81  4 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 108.85 103.10 5.75 0.90 N 
82  4 "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 109.23 103.10 6.13 0.90 N 
83  4 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 109.75 103.10 6.65 0.90 N 
84  4 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 109.79 103.10 6.69 0.90 N 
85  4 "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? 109.84 103.10 6.74 0.90 N 
86  4 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 109.54 103.10 6.44 0.90 N 
87  4 "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 109.55 103.10 6.45 0.90 N 
88  4 "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? 109.75 103.10 6.65 0.90 N 
89  5 "C4'" A DC 1  ? ? "C3'" A DC 1  ? ? "C2'" A DC 1  ? ? 109.95 103.10 6.85 0.90 N 
90  5 "C4'" A DG 2  ? ? "C3'" A DG 2  ? ? "C2'" A DG 2  ? ? 109.07 103.10 5.97 0.90 N 
91  5 "C4'" A DC 3  ? ? "C3'" A DC 3  ? ? "C2'" A DC 3  ? ? 109.99 103.10 6.89 0.90 N 
92  5 "C4'" A DA 5  ? ? "C3'" A DA 5  ? ? "C2'" A DA 5  ? ? 108.99 103.10 5.89 0.90 N 
93  5 "C4'" A DA 6  ? ? "C3'" A DA 6  ? ? "C2'" A DA 6  ? ? 109.34 103.10 6.24 0.90 N 
94  5 "C4'" A DT 7  ? ? "C3'" A DT 7  ? ? "C2'" A DT 7  ? ? 109.65 103.10 6.55 0.90 N 
95  5 "C4'" A DT 8  ? ? "C3'" A DT 8  ? ? "C2'" A DT 8  ? ? 109.78 103.10 6.68 0.90 N 
96  5 "C4'" A DC 9  ? ? "C3'" A DC 9  ? ? "C2'" A DC 9  ? ? 109.92 103.10 6.82 0.90 N 
97  5 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 109.47 103.10 6.37 0.90 N 
98  5 "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? 109.56 103.10 6.46 0.90 N 
99  5 "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? 109.71 103.10 6.61 0.90 N 
100 5 "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? 109.98 103.10 6.88 0.90 N 
101 5 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 109.10 103.10 6.00 0.90 N 
102 5 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 109.99 103.10 6.89 0.90 N 
103 5 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 108.98 103.10 5.88 0.90 N 
104 5 "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 109.27 103.10 6.17 0.90 N 
105 5 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 109.67 103.10 6.57 0.90 N 
106 5 "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? 109.70 103.10 6.60 0.90 N 
107 5 "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? 109.89 103.10 6.79 0.90 N 
108 5 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 109.46 103.10 6.36 0.90 N 
109 5 "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 109.61 103.10 6.51 0.90 N 
110 5 "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? 109.74 103.10 6.64 0.90 N 
# 
_pdbx_nmr_ensemble.entry_id                                      1DUF 
_pdbx_nmr_ensemble.conformers_calculated_total_number            20 
_pdbx_nmr_ensemble.conformers_submitted_total_number             5 
_pdbx_nmr_ensemble.conformer_selection_criteria                  'structures with the lowest energy' 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_representative.entry_id             1DUF 
_pdbx_nmr_representative.conformer_id         1 
_pdbx_nmr_representative.selection_criteria   ? 
# 
_pdbx_nmr_sample_details.solution_id      1 
_pdbx_nmr_sample_details.contents         '0.5 MM DUPLEX DNA, 40MM SODIUM PHOSPHATE, PH 7.0' 
_pdbx_nmr_sample_details.solvent_system   ? 
# 
_pdbx_nmr_exptl_sample_conditions.conditions_id       1 
_pdbx_nmr_exptl_sample_conditions.temperature         308.00 
_pdbx_nmr_exptl_sample_conditions.pressure            1 
_pdbx_nmr_exptl_sample_conditions.pH                  7.00 
_pdbx_nmr_exptl_sample_conditions.ionic_strength      '40 mM' 
_pdbx_nmr_exptl_sample_conditions.pressure_units      atm 
_pdbx_nmr_exptl_sample_conditions.temperature_units   K 
# 
loop_
_pdbx_nmr_exptl.experiment_id 
_pdbx_nmr_exptl.conditions_id 
_pdbx_nmr_exptl.type 
_pdbx_nmr_exptl.solution_id 
1 1 13C-HSQC-J-MODULATED   1 
2 1 COSY                   1 
3 1 '13C-HSQC-F1- COUPLED' 1 
4 1 '15N-HSQC-F1- COUPLED' 1 
5 1 '2D NOESY'             1 
# 
_pdbx_nmr_details.entry_id   1DUF 
_pdbx_nmr_details.text       
;THIS STRUCTURE WAS DETERMINED USING A COMPLETE SET OF HOMONUCLEAR AND 
HETERONUCLEAR DIPOLAR COUPLINGS IN LIQUID CRYSTAL
;
# 
_pdbx_nmr_refine.entry_id           1DUF 
_pdbx_nmr_refine.method             'SIMULATED ANNEALING, MOLECULAR DYNAMICS' 
_pdbx_nmr_refine.details            
;THE STRUCTURE IS BASED ON A TOTAL OF 162 NOE, 32 HYDROGEN BOND, AND
156 DIHEDRAL RESTRAINTS; AS WELL AS 198 CH AND 10 NH ONE-BOND DIPOLAR
COUPLING RESTRAINTS IN ADDITION TO 200 APPROXIMATE PROTON -PROTON
DIPOLAR COUPLINGS
;
_pdbx_nmr_refine.software_ordinal   1 
# 
loop_
_pdbx_nmr_software.classification 
_pdbx_nmr_software.name 
_pdbx_nmr_software.version 
_pdbx_nmr_software.authors 
_pdbx_nmr_software.ordinal 
refinement           X-PLOR              3.841          BRUNGER 1 
'structure solution' 'NMRPIPE 1.7 REV'   1999.039.11.31 ?       2 
'structure solution' 'XWINNMR VERSION'   2.4            ?       3 
'structure solution' 'PIPP/CAPP VERSION' 4.2.8          ?       4 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA OP3    O N N 1   
DA P      P N N 2   
DA OP1    O N N 3   
DA OP2    O N N 4   
DA "O5'"  O N N 5   
DA "C5'"  C N N 6   
DA "C4'"  C N R 7   
DA "O4'"  O N N 8   
DA "C3'"  C N S 9   
DA "O3'"  O N N 10  
DA "C2'"  C N N 11  
DA "C1'"  C N R 12  
DA N9     N Y N 13  
DA C8     C Y N 14  
DA N7     N Y N 15  
DA C5     C Y N 16  
DA C6     C Y N 17  
DA N6     N N N 18  
DA N1     N Y N 19  
DA C2     C Y N 20  
DA N3     N Y N 21  
DA C4     C Y N 22  
DA HOP3   H N N 23  
DA HOP2   H N N 24  
DA "H5'"  H N N 25  
DA "H5''" H N N 26  
DA "H4'"  H N N 27  
DA "H3'"  H N N 28  
DA "HO3'" H N N 29  
DA "H2'"  H N N 30  
DA "H2''" H N N 31  
DA "H1'"  H N N 32  
DA H8     H N N 33  
DA H61    H N N 34  
DA H62    H N N 35  
DA H2     H N N 36  
DC OP3    O N N 37  
DC P      P N N 38  
DC OP1    O N N 39  
DC OP2    O N N 40  
DC "O5'"  O N N 41  
DC "C5'"  C N N 42  
DC "C4'"  C N R 43  
DC "O4'"  O N N 44  
DC "C3'"  C N S 45  
DC "O3'"  O N N 46  
DC "C2'"  C N N 47  
DC "C1'"  C N R 48  
DC N1     N N N 49  
DC C2     C N N 50  
DC O2     O N N 51  
DC N3     N N N 52  
DC C4     C N N 53  
DC N4     N N N 54  
DC C5     C N N 55  
DC C6     C N N 56  
DC HOP3   H N N 57  
DC HOP2   H N N 58  
DC "H5'"  H N N 59  
DC "H5''" H N N 60  
DC "H4'"  H N N 61  
DC "H3'"  H N N 62  
DC "HO3'" H N N 63  
DC "H2'"  H N N 64  
DC "H2''" H N N 65  
DC "H1'"  H N N 66  
DC H41    H N N 67  
DC H42    H N N 68  
DC H5     H N N 69  
DC H6     H N N 70  
DG OP3    O N N 71  
DG P      P N N 72  
DG OP1    O N N 73  
DG OP2    O N N 74  
DG "O5'"  O N N 75  
DG "C5'"  C N N 76  
DG "C4'"  C N R 77  
DG "O4'"  O N N 78  
DG "C3'"  C N S 79  
DG "O3'"  O N N 80  
DG "C2'"  C N N 81  
DG "C1'"  C N R 82  
DG N9     N Y N 83  
DG C8     C Y N 84  
DG N7     N Y N 85  
DG C5     C Y N 86  
DG C6     C N N 87  
DG O6     O N N 88  
DG N1     N N N 89  
DG C2     C N N 90  
DG N2     N N N 91  
DG N3     N N N 92  
DG C4     C Y N 93  
DG HOP3   H N N 94  
DG HOP2   H N N 95  
DG "H5'"  H N N 96  
DG "H5''" H N N 97  
DG "H4'"  H N N 98  
DG "H3'"  H N N 99  
DG "HO3'" H N N 100 
DG "H2'"  H N N 101 
DG "H2''" H N N 102 
DG "H1'"  H N N 103 
DG H8     H N N 104 
DG H1     H N N 105 
DG H21    H N N 106 
DG H22    H N N 107 
DT OP3    O N N 108 
DT P      P N N 109 
DT OP1    O N N 110 
DT OP2    O N N 111 
DT "O5'"  O N N 112 
DT "C5'"  C N N 113 
DT "C4'"  C N R 114 
DT "O4'"  O N N 115 
DT "C3'"  C N S 116 
DT "O3'"  O N N 117 
DT "C2'"  C N N 118 
DT "C1'"  C N R 119 
DT N1     N N N 120 
DT C2     C N N 121 
DT O2     O N N 122 
DT N3     N N N 123 
DT C4     C N N 124 
DT O4     O N N 125 
DT C5     C N N 126 
DT C7     C N N 127 
DT C6     C N N 128 
DT HOP3   H N N 129 
DT HOP2   H N N 130 
DT "H5'"  H N N 131 
DT "H5''" H N N 132 
DT "H4'"  H N N 133 
DT "H3'"  H N N 134 
DT "HO3'" H N N 135 
DT "H2'"  H N N 136 
DT "H2''" H N N 137 
DT "H1'"  H N N 138 
DT H3     H N N 139 
DT H71    H N N 140 
DT H72    H N N 141 
DT H73    H N N 142 
DT H6     H N N 143 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA OP3   P      sing N N 1   
DA OP3   HOP3   sing N N 2   
DA P     OP1    doub N N 3   
DA P     OP2    sing N N 4   
DA P     "O5'"  sing N N 5   
DA OP2   HOP2   sing N N 6   
DA "O5'" "C5'"  sing N N 7   
DA "C5'" "C4'"  sing N N 8   
DA "C5'" "H5'"  sing N N 9   
DA "C5'" "H5''" sing N N 10  
DA "C4'" "O4'"  sing N N 11  
DA "C4'" "C3'"  sing N N 12  
DA "C4'" "H4'"  sing N N 13  
DA "O4'" "C1'"  sing N N 14  
DA "C3'" "O3'"  sing N N 15  
DA "C3'" "C2'"  sing N N 16  
DA "C3'" "H3'"  sing N N 17  
DA "O3'" "HO3'" sing N N 18  
DA "C2'" "C1'"  sing N N 19  
DA "C2'" "H2'"  sing N N 20  
DA "C2'" "H2''" sing N N 21  
DA "C1'" N9     sing N N 22  
DA "C1'" "H1'"  sing N N 23  
DA N9    C8     sing Y N 24  
DA N9    C4     sing Y N 25  
DA C8    N7     doub Y N 26  
DA C8    H8     sing N N 27  
DA N7    C5     sing Y N 28  
DA C5    C6     sing Y N 29  
DA C5    C4     doub Y N 30  
DA C6    N6     sing N N 31  
DA C6    N1     doub Y N 32  
DA N6    H61    sing N N 33  
DA N6    H62    sing N N 34  
DA N1    C2     sing Y N 35  
DA C2    N3     doub Y N 36  
DA C2    H2     sing N N 37  
DA N3    C4     sing Y N 38  
DC OP3   P      sing N N 39  
DC OP3   HOP3   sing N N 40  
DC P     OP1    doub N N 41  
DC P     OP2    sing N N 42  
DC P     "O5'"  sing N N 43  
DC OP2   HOP2   sing N N 44  
DC "O5'" "C5'"  sing N N 45  
DC "C5'" "C4'"  sing N N 46  
DC "C5'" "H5'"  sing N N 47  
DC "C5'" "H5''" sing N N 48  
DC "C4'" "O4'"  sing N N 49  
DC "C4'" "C3'"  sing N N 50  
DC "C4'" "H4'"  sing N N 51  
DC "O4'" "C1'"  sing N N 52  
DC "C3'" "O3'"  sing N N 53  
DC "C3'" "C2'"  sing N N 54  
DC "C3'" "H3'"  sing N N 55  
DC "O3'" "HO3'" sing N N 56  
DC "C2'" "C1'"  sing N N 57  
DC "C2'" "H2'"  sing N N 58  
DC "C2'" "H2''" sing N N 59  
DC "C1'" N1     sing N N 60  
DC "C1'" "H1'"  sing N N 61  
DC N1    C2     sing N N 62  
DC N1    C6     sing N N 63  
DC C2    O2     doub N N 64  
DC C2    N3     sing N N 65  
DC N3    C4     doub N N 66  
DC C4    N4     sing N N 67  
DC C4    C5     sing N N 68  
DC N4    H41    sing N N 69  
DC N4    H42    sing N N 70  
DC C5    C6     doub N N 71  
DC C5    H5     sing N N 72  
DC C6    H6     sing N N 73  
DG OP3   P      sing N N 74  
DG OP3   HOP3   sing N N 75  
DG P     OP1    doub N N 76  
DG P     OP2    sing N N 77  
DG P     "O5'"  sing N N 78  
DG OP2   HOP2   sing N N 79  
DG "O5'" "C5'"  sing N N 80  
DG "C5'" "C4'"  sing N N 81  
DG "C5'" "H5'"  sing N N 82  
DG "C5'" "H5''" sing N N 83  
DG "C4'" "O4'"  sing N N 84  
DG "C4'" "C3'"  sing N N 85  
DG "C4'" "H4'"  sing N N 86  
DG "O4'" "C1'"  sing N N 87  
DG "C3'" "O3'"  sing N N 88  
DG "C3'" "C2'"  sing N N 89  
DG "C3'" "H3'"  sing N N 90  
DG "O3'" "HO3'" sing N N 91  
DG "C2'" "C1'"  sing N N 92  
DG "C2'" "H2'"  sing N N 93  
DG "C2'" "H2''" sing N N 94  
DG "C1'" N9     sing N N 95  
DG "C1'" "H1'"  sing N N 96  
DG N9    C8     sing Y N 97  
DG N9    C4     sing Y N 98  
DG C8    N7     doub Y N 99  
DG C8    H8     sing N N 100 
DG N7    C5     sing Y N 101 
DG C5    C6     sing N N 102 
DG C5    C4     doub Y N 103 
DG C6    O6     doub N N 104 
DG C6    N1     sing N N 105 
DG N1    C2     sing N N 106 
DG N1    H1     sing N N 107 
DG C2    N2     sing N N 108 
DG C2    N3     doub N N 109 
DG N2    H21    sing N N 110 
DG N2    H22    sing N N 111 
DG N3    C4     sing N N 112 
DT OP3   P      sing N N 113 
DT OP3   HOP3   sing N N 114 
DT P     OP1    doub N N 115 
DT P     OP2    sing N N 116 
DT P     "O5'"  sing N N 117 
DT OP2   HOP2   sing N N 118 
DT "O5'" "C5'"  sing N N 119 
DT "C5'" "C4'"  sing N N 120 
DT "C5'" "H5'"  sing N N 121 
DT "C5'" "H5''" sing N N 122 
DT "C4'" "O4'"  sing N N 123 
DT "C4'" "C3'"  sing N N 124 
DT "C4'" "H4'"  sing N N 125 
DT "O4'" "C1'"  sing N N 126 
DT "C3'" "O3'"  sing N N 127 
DT "C3'" "C2'"  sing N N 128 
DT "C3'" "H3'"  sing N N 129 
DT "O3'" "HO3'" sing N N 130 
DT "C2'" "C1'"  sing N N 131 
DT "C2'" "H2'"  sing N N 132 
DT "C2'" "H2''" sing N N 133 
DT "C1'" N1     sing N N 134 
DT "C1'" "H1'"  sing N N 135 
DT N1    C2     sing N N 136 
DT N1    C6     sing N N 137 
DT C2    O2     doub N N 138 
DT C2    N3     sing N N 139 
DT N3    C4     sing N N 140 
DT N3    H3     sing N N 141 
DT C4    O4     doub N N 142 
DT C4    C5     sing N N 143 
DT C5    C7     sing N N 144 
DT C5    C6     doub N N 145 
DT C7    H71    sing N N 146 
DT C7    H72    sing N N 147 
DT C7    H73    sing N N 148 
DT C6    H6     sing N N 149 
# 
_ndb_struct_conf_na.entry_id   1DUF 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 12 1_555 0.185  -0.644 -1.324 -0.942 -14.391 6.747  1  A_DC1:DG24_B  A 1  ? B 24 ? 19 1 
1 A DG 2  1_555 B DC 11 1_555 -0.578 -0.403 -0.033 -5.424 -7.014  1.360  2  A_DG2:DC23_B  A 2  ? B 23 ? 19 1 
1 A DC 3  1_555 B DG 10 1_555 0.466  -0.458 -0.212 -1.029 -7.104  -0.794 3  A_DC3:DG22_B  A 3  ? B 22 ? 19 1 
1 A DG 4  1_555 B DC 9  1_555 -0.377 -0.430 -0.085 2.207  -9.874  -1.252 4  A_DG4:DC21_B  A 4  ? B 21 ? 19 1 
1 A DA 5  1_555 B DT 8  1_555 -0.243 -0.272 -0.098 -4.289 -12.087 0.685  5  A_DA5:DT20_B  A 5  ? B 20 ? 20 1 
1 A DA 6  1_555 B DT 7  1_555 -0.081 -0.164 0.073  3.091  -19.510 -1.088 6  A_DA6:DT19_B  A 6  ? B 19 ? 20 1 
1 A DT 7  1_555 B DA 6  1_555 0.077  -0.166 0.073  -3.045 -19.530 -1.290 7  A_DT7:DA18_B  A 7  ? B 18 ? 20 1 
1 A DT 8  1_555 B DA 5  1_555 0.250  -0.273 -0.086 4.177  -12.373 0.680  8  A_DT8:DA17_B  A 8  ? B 17 ? 20 1 
1 A DC 9  1_555 B DG 4  1_555 0.370  -0.430 -0.075 -2.066 -10.113 -1.327 9  A_DC9:DG16_B  A 9  ? B 16 ? 19 1 
1 A DG 10 1_555 B DC 3  1_555 -0.450 -0.456 -0.210 1.140  -7.604  -0.894 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 
1 A DC 11 1_555 B DG 2  1_555 0.600  -0.396 -0.013 4.985  -7.299  1.750  11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 
1 A DG 12 1_555 B DC 1  1_555 -0.176 -0.644 -1.331 1.006  -14.246 7.322  12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 12 1_555 A DG 2  1_555 B DC 11 1_555 -0.284 -0.468 4.005 -5.955 8.215  30.342 -2.661 -0.797 3.741 15.172 
10.998  31.956 1  AA_DC1DG2:DC23DG24_BB   A 1  ? B 24 ? A 2  ? B 23 ? 
1 A DG 2  1_555 B DC 11 1_555 A DC 3  1_555 B DG 10 1_555 -0.426 -0.447 3.227 0.483  -2.460 36.684 -0.377 0.740  3.243 -3.904 
-0.767  36.767 2  AA_DG2DC3:DG22DC23_BB   A 2  ? B 23 ? A 3  ? B 22 ? 
1 A DC 3  1_555 B DG 10 1_555 A DG 4  1_555 B DC 9  1_555 -0.082 -0.632 3.323 0.037  7.331  30.957 -2.489 0.156  3.096 13.499 
-0.069  31.793 3  AA_DC3DG4:DC21DG22_BB   A 3  ? B 22 ? A 4  ? B 21 ? 
1 A DG 4  1_555 B DC 9  1_555 A DA 5  1_555 B DT 8  1_555 -0.271 -0.468 3.341 -1.651 4.261  36.084 -1.353 0.200  3.275 6.845  
2.653   36.362 4  AA_DG4DA5:DT20DC21_BB   A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DA 5  1_555 B DT 8  1_555 A DA 6  1_555 B DT 7  1_555 -0.410 -0.305 3.167 -0.866 -2.345 37.190 -0.175 0.530  3.188 -3.671 
1.356   37.271 5  AA_DA5DA6:DT19DT20_BB   A 5  ? B 20 ? A 6  ? B 19 ? 
1 A DA 6  1_555 B DT 7  1_555 A DT 7  1_555 B DA 6  1_555 -0.002 -0.463 3.477 0.027  -4.952 36.124 -0.004 0.008  3.507 -7.940 
-0.044  36.451 6  AA_DA6DT7:DA18DT19_BB   A 6  ? B 19 ? A 7  ? B 18 ? 
1 A DT 7  1_555 B DA 6  1_555 A DT 8  1_555 B DA 5  1_555 0.424  -0.301 3.159 0.957  -2.173 37.276 -0.192 -0.540 3.180 -3.395 
-1.495  37.349 7  AA_DT7DT8:DA17DA18_BB   A 7  ? B 18 ? A 8  ? B 17 ? 
1 A DT 8  1_555 B DA 5  1_555 A DC 9  1_555 B DG 4  1_555 0.265  -0.462 3.324 1.677  4.218  36.044 -1.336 -0.188 3.260 6.784  
-2.698  36.320 8  AA_DT8DC9:DG16DA17_BB   A 8  ? B 17 ? A 9  ? B 16 ? 
1 A DC 9  1_555 B DG 4  1_555 A DG 10 1_555 B DC 3  1_555 0.076  -0.604 3.329 0.098  7.350  31.179 -2.418 -0.120 3.110 13.442 
-0.180  32.013 9  AA_DC9DG10:DC15DG16_BB  A 9  ? B 16 ? A 10 ? B 15 ? 
1 A DG 10 1_555 B DC 3  1_555 A DC 11 1_555 B DG 2  1_555 0.474  -0.457 3.220 -0.563 -2.239 36.776 -0.424 -0.826 3.234 -3.545 
0.892   36.846 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A DC 11 1_555 B DG 2  1_555 A DG 12 1_555 B DC 1  1_555 0.296  -0.460 3.975 5.981  8.263  30.336 -2.642 0.770  3.715 15.257 
-11.045 31.966 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
# 
loop_
_pdbx_nmr_spectrometer.spectrometer_id 
_pdbx_nmr_spectrometer.model 
_pdbx_nmr_spectrometer.manufacturer 
_pdbx_nmr_spectrometer.field_strength 
_pdbx_nmr_spectrometer.type 
1 DMX Bruker 600 ? 
2 DMX Bruker 750 ? 
# 
_atom_sites.entry_id                    1DUF 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_