HEADER LIGASE 19-JAN-00 1DV1 TITLE STRUCTURE OF BIOTIN CARBOXYLASE (APO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.4.14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP-GRASP, CARBOXYLASE, BIOTIN-DEPENDENT, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,C.Z.BLANCHARD,H.M.HOLDEN,G.L.WALDROP REVDAT 5 07-FEB-24 1DV1 1 REMARK REVDAT 4 04-OCT-17 1DV1 1 REMARK REVDAT 3 01-FEB-17 1DV1 1 AUTHOR VERSN REVDAT 2 24-FEB-09 1DV1 1 VERSN REVDAT 1 09-JUN-00 1DV1 0 JRNL AUTH J.B.THODEN,C.Z.BLANCHARD,H.M.HOLDEN,G.L.WALDROP JRNL TITL MOVEMENT OF THE BIOTIN CARBOXYLASE B-DOMAIN AS A RESULT OF JRNL TITL 2 ATP BINDING. JRNL REF J.BIOL.CHEM. V. 275 16183 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10821865 JRNL DOI 10.1074/JBC.275.21.16183 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 78489 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7850 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1820 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 78489 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6624 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 544 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.014 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.380 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000010395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 9 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : FRAMBO REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78489 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM POTASSIUM PHOSPHATE 1MM EDTA 2MM REMARK 280 DTT, PH 7.0, MICRODIALYSIS, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HE BIOLOGICAL ASSEMBLY IS A REMARK 300 HOMODIMER CONSTRUCTED FROM REMARK 300 CHAIN A AND CHAIN B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 162 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 GLY A 166 REMARK 465 ARG A 167 REMARK 465 GLY A 168 REMARK 465 LYS A 190 REMARK 465 ALA A 191 REMARK 465 ALA A 192 REMARK 465 PHE A 193 REMARK 465 SER A 194 REMARK 465 GLN A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 ALA B 160 REMARK 465 SER B 161 REMARK 465 GLY B 162 REMARK 465 GLY B 163 REMARK 465 GLY B 164 REMARK 465 GLY B 165 REMARK 465 GLY B 166 REMARK 465 ARG B 167 REMARK 465 GLY B 168 REMARK 465 GLU B 188 REMARK 465 ALA B 189 REMARK 465 LYS B 190 REMARK 465 ALA B 191 REMARK 465 ALA B 192 REMARK 465 PHE B 193 REMARK 465 SER B 194 REMARK 465 ASN B 195 REMARK 465 ASP B 196 REMARK 465 MET B 197 REMARK 465 VAL B 198 REMARK 465 LYS B 449 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CA REMARK 470 ASN A 195 CG OD1 ND2 REMARK 470 ASP A 196 CG OD1 OD2 REMARK 470 MET A 197 CG SD CE REMARK 470 LEU B 138 CG CD1 CD2 REMARK 470 ASP B 140 CG OD1 OD2 REMARK 470 ASP B 141 CG OD1 OD2 REMARK 470 MET B 142 CG SD CE REMARK 470 ASP B 143 CG OD1 OD2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 ARG B 146 CG CD NE CZ NH1 NH2 REMARK 470 MET B 169 CG SD CE REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 470 GLN B 180 CG CD OE1 NE2 REMARK 470 SER B 183 OG REMARK 470 MET B 184 CG SD CE REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 12 CD GLU A 12 OE2 0.069 REMARK 500 GLU A 47 CD GLU A 47 OE2 0.072 REMARK 500 GLU A 96 CD GLU A 96 OE2 0.068 REMARK 500 GLU A 108 CD GLU A 108 OE2 0.068 REMARK 500 GLU A 177 CD GLU A 177 OE2 0.068 REMARK 500 GLU A 188 CD GLU A 188 OE2 0.124 REMARK 500 GLU A 205 CD GLU A 205 OE2 0.135 REMARK 500 GLU A 241 CD GLU A 241 OE2 0.068 REMARK 500 GLU A 251 CD GLU A 251 OE2 0.091 REMARK 500 GLU A 258 CD GLU A 258 OE2 0.070 REMARK 500 GLU A 288 CD GLU A 288 OE2 0.075 REMARK 500 GLU A 326 CD GLU A 326 OE2 0.074 REMARK 500 GLU A 342 CD GLU A 342 OE2 0.072 REMARK 500 GLU A 368 CD GLU A 368 OE2 0.083 REMARK 500 GLU B 71 CD GLU B 71 OE2 0.071 REMARK 500 GLU B 87 CD GLU B 87 OE2 0.072 REMARK 500 GLU B 93 CD GLU B 93 OE2 0.068 REMARK 500 GLU B 96 CD GLU B 96 OE2 0.080 REMARK 500 GLU B 108 CD GLU B 108 OE2 0.071 REMARK 500 GLU B 205 CD GLU B 205 OE2 0.071 REMARK 500 GLU B 251 CD GLU B 251 OE2 0.074 REMARK 500 GLU B 288 CD GLU B 288 OE2 0.088 REMARK 500 GLU B 326 CD GLU B 326 OE2 0.093 REMARK 500 GLU B 428 CD GLU B 428 OE2 0.072 REMARK 500 GLU B 441 CD GLU B 441 OE2 0.070 REMARK 500 GLU B 448 CD GLU B 448 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 3 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 3 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 PRO A 55 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 175 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 229 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 366 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 366 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR A 375 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 395 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 419 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 419 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 419 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP B 3 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP B 46 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP B 135 N - CA - CB ANGL. DEV. = 15.6 DEGREES REMARK 500 ASP B 175 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 175 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 228 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 229 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 253 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 254 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 259 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 343 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 TYR B 372 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 382 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -77.75 -128.74 REMARK 500 PHE A 84 -115.45 46.44 REMARK 500 ASP A 135 74.61 45.82 REMARK 500 LEU A 225 68.63 -117.97 REMARK 500 ALA A 226 -157.51 53.15 REMARK 500 TYR A 381 -142.70 -109.79 REMARK 500 SER B 59 -80.92 -120.17 REMARK 500 PHE B 84 -120.65 48.24 REMARK 500 ASP B 135 68.37 62.50 REMARK 500 PRO B 137 158.35 -48.75 REMARK 500 ASP B 141 63.54 -64.41 REMARK 500 MET B 142 -8.24 -53.80 REMARK 500 LYS B 144 -71.16 -73.63 REMARK 500 ASP B 175 -51.74 -28.61 REMARK 500 GLN B 219 31.67 -94.06 REMARK 500 LEU B 225 58.58 -118.55 REMARK 500 ALA B 226 -160.94 59.28 REMARK 500 PRO B 349 155.49 -47.39 REMARK 500 TYR B 381 -163.58 -109.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DV2 RELATED DB: PDB REMARK 900 THE STRUCTURE OF BIOTIN CARBOXYLASE, MUTANT E288K, COMPLEXED WITH REMARK 900 ATP DBREF 1DV1 A 1 449 UNP P24182 ACCC_ECOLI 1 449 DBREF 1DV1 B 1 449 UNP P24182 ACCC_ECOLI 1 449 SEQRES 1 A 449 MET LEU ASP LYS ILE VAL ILE ALA ASN ARG GLY GLU ILE SEQRES 2 A 449 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 A 449 LYS THR VAL ALA VAL HIS SER SER ALA ASP ARG ASP LEU SEQRES 4 A 449 LYS HIS VAL LEU LEU ALA ASP GLU THR VAL CYS ILE GLY SEQRES 5 A 449 PRO ALA PRO SER VAL LYS SER TYR LEU ASN ILE PRO ALA SEQRES 6 A 449 ILE ILE SER ALA ALA GLU ILE THR GLY ALA VAL ALA ILE SEQRES 7 A 449 HIS PRO GLY TYR GLY PHE LEU SER GLU ASN ALA ASN PHE SEQRES 8 A 449 ALA GLU GLN VAL GLU ARG SER GLY PHE ILE PHE ILE GLY SEQRES 9 A 449 PRO LYS ALA GLU THR ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 A 449 SER ALA ILE ALA ALA MET LYS LYS ALA GLY VAL PRO CYS SEQRES 11 A 449 VAL PRO GLY SER ASP GLY PRO LEU GLY ASP ASP MET ASP SEQRES 12 A 449 LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY TYR PRO VAL SEQRES 13 A 449 ILE ILE LYS ALA SER GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 A 449 ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA GLN SER ILE SEQRES 15 A 449 SER MET THR ARG ALA GLU ALA LYS ALA ALA PHE SER ASN SEQRES 16 A 449 ASP MET VAL TYR MET GLU LYS TYR LEU GLU ASN PRO ARG SEQRES 17 A 449 HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY GLN GLY ASN SEQRES 18 A 449 ALA ILE TYR LEU ALA GLU ARG ASP CYS SER MET GLN ARG SEQRES 19 A 449 ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO ALA PRO GLY SEQRES 20 A 449 ILE THR PRO GLU LEU ARG ARG TYR ILE GLY GLU ARG CYS SEQRES 21 A 449 ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG GLY ALA GLY SEQRES 22 A 449 THR PHE GLU PHE LEU PHE GLU ASN GLY GLU PHE TYR PHE SEQRES 23 A 449 ILE GLU MET ASN THR ARG ILE GLN VAL GLU HIS PRO VAL SEQRES 24 A 449 THR GLU MET ILE THR GLY VAL ASP LEU ILE LYS GLU GLN SEQRES 25 A 449 LEU ARG ILE ALA ALA GLY GLN PRO LEU SER ILE LYS GLN SEQRES 26 A 449 GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL GLU CYS ARG SEQRES 27 A 449 ILE ASN ALA GLU ASP PRO ASN THR PHE LEU PRO SER PRO SEQRES 28 A 449 GLY LYS ILE THR ARG PHE HIS ALA PRO GLY GLY PHE GLY SEQRES 29 A 449 VAL ARG TRP GLU SER HIS ILE TYR ALA GLY TYR THR VAL SEQRES 30 A 449 PRO PRO TYR TYR ASP SER MET ILE GLY LYS LEU ILE CYS SEQRES 31 A 449 TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA ARG MET LYS SEQRES 32 A 449 ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY ILE LYS THR SEQRES 33 A 449 ASN VAL ASP LEU GLN ILE ARG ILE MET ASN ASP GLU ASN SEQRES 34 A 449 PHE GLN HIS GLY GLY THR ASN ILE HIS TYR LEU GLU LYS SEQRES 35 A 449 LYS LEU GLY LEU GLN GLU LYS SEQRES 1 B 449 MET LEU ASP LYS ILE VAL ILE ALA ASN ARG GLY GLU ILE SEQRES 2 B 449 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 B 449 LYS THR VAL ALA VAL HIS SER SER ALA ASP ARG ASP LEU SEQRES 4 B 449 LYS HIS VAL LEU LEU ALA ASP GLU THR VAL CYS ILE GLY SEQRES 5 B 449 PRO ALA PRO SER VAL LYS SER TYR LEU ASN ILE PRO ALA SEQRES 6 B 449 ILE ILE SER ALA ALA GLU ILE THR GLY ALA VAL ALA ILE SEQRES 7 B 449 HIS PRO GLY TYR GLY PHE LEU SER GLU ASN ALA ASN PHE SEQRES 8 B 449 ALA GLU GLN VAL GLU ARG SER GLY PHE ILE PHE ILE GLY SEQRES 9 B 449 PRO LYS ALA GLU THR ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 B 449 SER ALA ILE ALA ALA MET LYS LYS ALA GLY VAL PRO CYS SEQRES 11 B 449 VAL PRO GLY SER ASP GLY PRO LEU GLY ASP ASP MET ASP SEQRES 12 B 449 LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY TYR PRO VAL SEQRES 13 B 449 ILE ILE LYS ALA SER GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 B 449 ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA GLN SER ILE SEQRES 15 B 449 SER MET THR ARG ALA GLU ALA LYS ALA ALA PHE SER ASN SEQRES 16 B 449 ASP MET VAL TYR MET GLU LYS TYR LEU GLU ASN PRO ARG SEQRES 17 B 449 HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY GLN GLY ASN SEQRES 18 B 449 ALA ILE TYR LEU ALA GLU ARG ASP CYS SER MET GLN ARG SEQRES 19 B 449 ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO ALA PRO GLY SEQRES 20 B 449 ILE THR PRO GLU LEU ARG ARG TYR ILE GLY GLU ARG CYS SEQRES 21 B 449 ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG GLY ALA GLY SEQRES 22 B 449 THR PHE GLU PHE LEU PHE GLU ASN GLY GLU PHE TYR PHE SEQRES 23 B 449 ILE GLU MET ASN THR ARG ILE GLN VAL GLU HIS PRO VAL SEQRES 24 B 449 THR GLU MET ILE THR GLY VAL ASP LEU ILE LYS GLU GLN SEQRES 25 B 449 LEU ARG ILE ALA ALA GLY GLN PRO LEU SER ILE LYS GLN SEQRES 26 B 449 GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL GLU CYS ARG SEQRES 27 B 449 ILE ASN ALA GLU ASP PRO ASN THR PHE LEU PRO SER PRO SEQRES 28 B 449 GLY LYS ILE THR ARG PHE HIS ALA PRO GLY GLY PHE GLY SEQRES 29 B 449 VAL ARG TRP GLU SER HIS ILE TYR ALA GLY TYR THR VAL SEQRES 30 B 449 PRO PRO TYR TYR ASP SER MET ILE GLY LYS LEU ILE CYS SEQRES 31 B 449 TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA ARG MET LYS SEQRES 32 B 449 ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY ILE LYS THR SEQRES 33 B 449 ASN VAL ASP LEU GLN ILE ARG ILE MET ASN ASP GLU ASN SEQRES 34 B 449 PHE GLN HIS GLY GLY THR ASN ILE HIS TYR LEU GLU LYS SEQRES 35 B 449 LYS LEU GLY LEU GLN GLU LYS HET PO4 A1000 5 HET PO4 B1001 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *544(H2 O) HELIX 1 1 ARG A 10 GLY A 25 1 16 HELIX 2 2 ALA A 35 ARG A 37 5 3 HELIX 3 3 LEU A 39 ALA A 45 1 7 HELIX 4 4 PRO A 55 SER A 59 5 5 HELIX 5 5 ASN A 62 GLY A 74 1 13 HELIX 6 6 ASN A 88 SER A 98 1 11 HELIX 7 7 LYS A 106 ASP A 115 1 10 HELIX 8 8 ASP A 115 ALA A 126 1 12 HELIX 9 9 ASP A 141 GLY A 153 1 13 HELIX 10 10 GLY A 174 ALA A 189 1 16 HELIX 11 11 THR A 249 GLY A 268 1 20 HELIX 12 12 GLU A 296 GLY A 305 1 10 HELIX 13 13 ASP A 307 ALA A 317 1 11 HELIX 14 14 LYS A 324 VAL A 328 5 5 HELIX 15 15 ASN A 394 LEU A 409 1 16 HELIX 16 16 ASN A 417 ASP A 427 1 11 HELIX 17 17 ASP A 427 GLY A 433 1 7 HELIX 18 18 HIS A 438 GLY A 445 1 8 HELIX 19 19 ARG B 10 LEU B 24 1 15 HELIX 20 20 ALA B 35 ARG B 37 5 3 HELIX 21 21 LEU B 39 ALA B 45 1 7 HELIX 22 22 ASN B 62 GLY B 74 1 13 HELIX 23 23 ASN B 88 SER B 98 1 11 HELIX 24 24 LYS B 106 ASP B 115 1 10 HELIX 25 25 ASP B 115 GLY B 127 1 13 HELIX 26 26 ASP B 141 GLY B 153 1 13 HELIX 27 27 GLY B 174 ALA B 176 5 3 HELIX 28 28 GLU B 177 ALA B 187 1 11 HELIX 29 29 THR B 249 GLY B 268 1 20 HELIX 30 30 GLU B 296 GLY B 305 1 10 HELIX 31 31 ASP B 307 ALA B 317 1 11 HELIX 32 32 LYS B 324 VAL B 328 5 5 HELIX 33 33 ASN B 394 LEU B 409 1 16 HELIX 34 34 ASN B 417 ASN B 426 1 10 HELIX 35 35 ASP B 427 GLY B 433 1 7 HELIX 36 36 HIS B 438 GLY B 445 1 8 SHEET 1 A 5 GLU A 47 GLY A 52 0 SHEET 2 A 5 LYS A 27 SER A 33 1 O THR A 28 N GLU A 47 SHEET 3 A 5 LYS A 4 ILE A 7 1 N ILE A 5 O LYS A 27 SHEET 4 A 5 ALA A 77 HIS A 79 1 O ALA A 77 N VAL A 6 SHEET 5 A 5 ILE A 101 PHE A 102 1 O ILE A 101 N ILE A 78 SHEET 1 B 2 VAL A 156 ALA A 160 0 SHEET 2 B 2 VAL A 198 LYS A 202 -1 O TYR A 199 N LYS A 159 SHEET 1 C 8 GLU A 283 ASN A 290 0 SHEET 2 C 8 ARG A 270 GLU A 280 -1 O THR A 274 N ASN A 290 SHEET 3 C 8 ARG A 208 ASP A 217 -1 N ARG A 208 O PHE A 279 SHEET 4 C 8 ALA A 222 ARG A 234 -1 N ILE A 223 O LEU A 215 SHEET 5 C 8 GLN A 237 ALA A 243 -1 O GLN A 237 N ARG A 234 SHEET 6 C 8 HIS A 333 ASN A 340 -1 N ALA A 334 O ALA A 243 SHEET 7 C 8 MET A 384 GLY A 392 -1 N ILE A 385 O ILE A 339 SHEET 8 C 8 VAL A 365 GLU A 368 -1 N ARG A 366 O ILE A 389 SHEET 1 D 2 GLY A 352 LYS A 353 0 SHEET 2 D 2 THR A 376 VAL A 377 -1 N VAL A 377 O GLY A 352 SHEET 1 E 2 PHE A 357 HIS A 358 0 SHEET 2 E 2 ILE A 410 ILE A 411 -1 O ILE A 410 N HIS A 358 SHEET 1 F 5 GLU B 47 GLY B 52 0 SHEET 2 F 5 LYS B 27 SER B 33 1 O THR B 28 N GLU B 47 SHEET 3 F 5 LYS B 4 ILE B 7 1 N ILE B 5 O LYS B 27 SHEET 4 F 5 ALA B 77 HIS B 79 1 O ALA B 77 N VAL B 6 SHEET 5 F 5 ILE B 101 PHE B 102 1 O ILE B 101 N ILE B 78 SHEET 1 G 3 ARG B 170 VAL B 172 0 SHEET 2 G 3 VAL B 156 ILE B 158 -1 O VAL B 156 N VAL B 172 SHEET 3 G 3 MET B 200 LYS B 202 -1 N GLU B 201 O ILE B 157 SHEET 1 H 8 GLU B 283 ASN B 290 0 SHEET 2 H 8 ARG B 270 GLU B 280 -1 O THR B 274 N ASN B 290 SHEET 3 H 8 ARG B 208 ASP B 217 -1 N ARG B 208 O PHE B 279 SHEET 4 H 8 ALA B 222 ARG B 234 -1 N ILE B 223 O LEU B 215 SHEET 5 H 8 GLN B 237 ALA B 243 -1 O GLN B 237 N ARG B 234 SHEET 6 H 8 HIS B 333 ASN B 340 -1 N ALA B 334 O ALA B 243 SHEET 7 H 8 MET B 384 GLY B 392 -1 N ILE B 385 O ILE B 339 SHEET 8 H 8 VAL B 365 GLU B 368 -1 O ARG B 366 N ILE B 389 SHEET 1 I 2 GLY B 352 LYS B 353 0 SHEET 2 I 2 THR B 376 VAL B 377 -1 N VAL B 377 O GLY B 352 SHEET 1 J 2 ARG B 356 HIS B 358 0 SHEET 2 J 2 ILE B 410 ASP B 412 -1 N ILE B 410 O HIS B 358 CISPEP 1 TYR A 154 PRO A 155 0 -1.04 CISPEP 2 ALA A 243 PRO A 244 0 3.67 CISPEP 3 TYR B 154 PRO B 155 0 1.28 CISPEP 4 ALA B 243 PRO B 244 0 -3.61 SITE 1 AC1 9 LYS A 238 ARG A 292 GLN A 294 VAL A 295 SITE 2 AC1 9 GLU A 296 ARG A 338 HOH A1213 HOH A1237 SITE 3 AC1 9 HOH A1337 SITE 1 AC2 7 LYS B 238 ARG B 292 GLN B 294 VAL B 295 SITE 2 AC2 7 GLU B 296 ARG B 338 HOH B1373 CRYST1 61.700 95.800 180.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016207 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005534 0.00000