HEADER LIGASE 19-JAN-00 1DV2 TITLE THE STRUCTURE OF BIOTIN CARBOXYLASE, MUTANT E288K, COMPLEXED WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BIOTIN CARBOXYLASE; COMPND 5 EC: 6.3.4.14; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP-GRASP BIOTIN-DEPENDENT CARBOXYLASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,C.Z.BLANCHARD,H.M.HOLDEN,G.L.WALDROP REVDAT 7 22-MAY-24 1DV2 1 REMARK REVDAT 6 21-DEC-22 1DV2 1 REMARK SEQADV REVDAT 5 14-MAR-18 1DV2 1 SEQADV REVDAT 4 04-OCT-17 1DV2 1 REMARK REVDAT 3 24-FEB-09 1DV2 1 VERSN REVDAT 2 02-MAY-06 1DV2 1 JRNL REMARK DBREF SEQADV REVDAT 2 2 1 MASTER REVDAT 1 09-JUN-00 1DV2 0 JRNL AUTH J.B.THODEN,C.Z.BLANCHARD,H.M.HOLDEN,G.L.WALDROP JRNL TITL MOVEMENT OF THE BIOTIN CARBOXYLASE B-DOMAIN AS A RESULT OF JRNL TITL 2 ATP BINDING. JRNL REF J.BIOL.CHEM. V. 275 16183 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10821865 JRNL DOI 10.1074/JBC.275.21.16183 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 37574 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3760 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1720 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 37574 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.350 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000010396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37574 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-8000 ATP MAGNESIUM CHLORIDE HEPPS REMARK 280 POTASSIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 GLY B 1C REMARK 465 SER B 1B REMARK 465 GLU B 448 REMARK 465 LYS B 449 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 47 CD GLU A 47 OE2 0.081 REMARK 500 GLU A 93 CD GLU A 93 OE2 0.067 REMARK 500 GLU A 96 CD GLU A 96 OE2 0.067 REMARK 500 GLU A 188 CD GLU A 188 OE2 0.069 REMARK 500 GLU A 201 CD GLU A 201 OE2 0.068 REMARK 500 GLU A 205 CD GLU A 205 OE2 0.067 REMARK 500 GLU A 211 CD GLU A 211 OE2 0.075 REMARK 500 GLU A 251 CD GLU A 251 OE2 0.066 REMARK 500 GLU A 276 CD GLU A 276 OE2 0.069 REMARK 500 GLU A 326 CD GLU A 326 OE2 0.072 REMARK 500 GLU A 342 CD GLU A 342 OE2 0.077 REMARK 500 GLU A 428 CD GLU A 428 OE2 0.070 REMARK 500 GLU A 441 CD GLU A 441 OE2 0.071 REMARK 500 GLU B 47 CD GLU B 47 OE2 0.072 REMARK 500 GLU B 71 CD GLU B 71 OE2 0.069 REMARK 500 GLU B 177 CD GLU B 177 OE2 0.073 REMARK 500 GLU B 188 CD GLU B 188 OE2 0.070 REMARK 500 GLU B 211 CD GLU B 211 OE2 0.068 REMARK 500 GLU B 276 CD GLU B 276 OE2 0.067 REMARK 500 GLU B 326 CD GLU B 326 OE2 0.068 REMARK 500 GLU B 342 CD GLU B 342 OE2 0.074 REMARK 500 GLU B 441 CD GLU B 441 OE2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 46 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 46 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 143 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 PRO A 155 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 217 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 259 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 266 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 270 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 307 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 343 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 382 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 CYS A 390 N - CA - CB ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP A 412 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 419 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 427 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 427 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 3 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP B 46 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 97 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 97 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 115 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP B 135 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 141 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 175 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP B 175 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP B 196 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 196 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 228 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 234 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 259 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 SER B 350 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG B 366 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PRO B 379 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 45.95 -70.00 REMARK 500 ASN A 9 -157.09 -153.69 REMARK 500 SER A 34 -19.02 -45.95 REMARK 500 ALA A 54 -63.00 -29.88 REMARK 500 SER A 59 -99.84 -113.01 REMARK 500 TYR A 60 -19.79 -48.96 REMARK 500 PHE A 84 -76.84 -114.79 REMARK 500 ILE A 103 79.00 -69.59 REMARK 500 MET A 142 -39.91 -22.62 REMARK 500 ALA A 192 -71.28 -69.41 REMARK 500 ASN A 195 94.17 -174.44 REMARK 500 GLU A 205 -72.19 -66.31 REMARK 500 LEU A 225 50.90 -109.72 REMARK 500 ALA A 226 -174.31 70.71 REMARK 500 MET A 232 77.52 -68.53 REMARK 500 HIS A 236 -9.13 74.48 REMARK 500 TYR A 255 -76.62 -68.06 REMARK 500 ARG A 292 176.93 178.25 REMARK 500 ASN A 345 -60.82 -90.77 REMARK 500 TYR A 381 -167.50 -107.35 REMARK 500 ASP A 382 177.27 -54.84 REMARK 500 LEU A 444 0.93 -62.17 REMARK 500 ASN B 9 -169.96 -173.59 REMARK 500 SER B 59 -96.72 -127.89 REMARK 500 PHE B 84 -72.01 -97.92 REMARK 500 LEU B 178 -38.07 -35.71 REMARK 500 ALA B 179 -80.32 -44.18 REMARK 500 SER B 181 -91.13 -18.17 REMARK 500 SER B 194 42.88 80.41 REMARK 500 ASN B 195 83.04 -155.92 REMARK 500 ASP B 196 3.67 -57.28 REMARK 500 GLU B 205 -70.50 -68.69 REMARK 500 ALA B 226 -164.43 46.31 REMARK 500 HIS B 236 -9.23 75.50 REMARK 500 PRO B 244 -169.65 -69.32 REMARK 500 TYR B 255 -73.04 -55.87 REMARK 500 GLU B 326 -6.29 -51.74 REMARK 500 TYR B 381 -160.91 -116.11 REMARK 500 LEU B 444 5.09 -59.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DV1 RELATED DB: PDB REMARK 900 STRUCTURE OF BIOTIN CARBOXYLASE (APO) DBREF 1DV2 A 1 449 UNP P24182 ACCC_ECOLI 1 449 DBREF 1DV2 B 1 449 UNP P24182 ACCC_ECOLI 1 449 SEQADV 1DV2 HIS A 1A UNP P24182 INSERTION SEQADV 1DV2 SER A 1B UNP P24182 INSERTION SEQADV 1DV2 GLY A 1C UNP P24182 INSERTION SEQADV 1DV2 HIS B 1A UNP P24182 INSERTION SEQADV 1DV2 SER B 1B UNP P24182 INSERTION SEQADV 1DV2 GLY B 1C UNP P24182 INSERTION SEQADV 1DV2 LYS A 288 UNP P24182 GLU 288 ENGINEERED MUTATION SEQADV 1DV2 LYS B 288 UNP P24182 GLU 288 ENGINEERED MUTATION SEQRES 1 A 452 GLY SER HIS MET LEU ASP LYS ILE VAL ILE ALA ASN ARG SEQRES 2 A 452 GLY GLU ILE ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU SEQRES 3 A 452 LEU GLY ILE LYS THR VAL ALA VAL HIS SER SER ALA ASP SEQRES 4 A 452 ARG ASP LEU LYS HIS VAL LEU LEU ALA ASP GLU THR VAL SEQRES 5 A 452 CYS ILE GLY PRO ALA PRO SER VAL LYS SER TYR LEU ASN SEQRES 6 A 452 ILE PRO ALA ILE ILE SER ALA ALA GLU ILE THR GLY ALA SEQRES 7 A 452 VAL ALA ILE HIS PRO GLY TYR GLY PHE LEU SER GLU ASN SEQRES 8 A 452 ALA ASN PHE ALA GLU GLN VAL GLU ARG SER GLY PHE ILE SEQRES 9 A 452 PHE ILE GLY PRO LYS ALA GLU THR ILE ARG LEU MET GLY SEQRES 10 A 452 ASP LYS VAL SER ALA ILE ALA ALA MET LYS LYS ALA GLY SEQRES 11 A 452 VAL PRO CYS VAL PRO GLY SER ASP GLY PRO LEU GLY ASP SEQRES 12 A 452 ASP MET ASP LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY SEQRES 13 A 452 TYR PRO VAL ILE ILE LYS ALA SER GLY GLY GLY GLY GLY SEQRES 14 A 452 ARG GLY MET ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA SEQRES 15 A 452 GLN SER ILE SER MET THR ARG ALA GLU ALA LYS ALA ALA SEQRES 16 A 452 PHE SER ASN ASP MET VAL TYR MET GLU LYS TYR LEU GLU SEQRES 17 A 452 ASN PRO ARG HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY SEQRES 18 A 452 GLN GLY ASN ALA ILE TYR LEU ALA GLU ARG ASP CYS SER SEQRES 19 A 452 MET GLN ARG ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO SEQRES 20 A 452 ALA PRO GLY ILE THR PRO GLU LEU ARG ARG TYR ILE GLY SEQRES 21 A 452 GLU ARG CYS ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG SEQRES 22 A 452 GLY ALA GLY THR PHE GLU PHE LEU PHE GLU ASN GLY GLU SEQRES 23 A 452 PHE TYR PHE ILE LYS MET ASN THR ARG ILE GLN VAL GLU SEQRES 24 A 452 HIS PRO VAL THR GLU MET ILE THR GLY VAL ASP LEU ILE SEQRES 25 A 452 LYS GLU GLN LEU ARG ILE ALA ALA GLY GLN PRO LEU SER SEQRES 26 A 452 ILE LYS GLN GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL SEQRES 27 A 452 GLU CYS ARG ILE ASN ALA GLU ASP PRO ASN THR PHE LEU SEQRES 28 A 452 PRO SER PRO GLY LYS ILE THR ARG PHE HIS ALA PRO GLY SEQRES 29 A 452 GLY PHE GLY VAL ARG TRP GLU SER HIS ILE TYR ALA GLY SEQRES 30 A 452 TYR THR VAL PRO PRO TYR TYR ASP SER MET ILE GLY LYS SEQRES 31 A 452 LEU ILE CYS TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA SEQRES 32 A 452 ARG MET LYS ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY SEQRES 33 A 452 ILE LYS THR ASN VAL ASP LEU GLN ILE ARG ILE MET ASN SEQRES 34 A 452 ASP GLU ASN PHE GLN HIS GLY GLY THR ASN ILE HIS TYR SEQRES 35 A 452 LEU GLU LYS LYS LEU GLY LEU GLN GLU LYS SEQRES 1 B 452 GLY SER HIS MET LEU ASP LYS ILE VAL ILE ALA ASN ARG SEQRES 2 B 452 GLY GLU ILE ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU SEQRES 3 B 452 LEU GLY ILE LYS THR VAL ALA VAL HIS SER SER ALA ASP SEQRES 4 B 452 ARG ASP LEU LYS HIS VAL LEU LEU ALA ASP GLU THR VAL SEQRES 5 B 452 CYS ILE GLY PRO ALA PRO SER VAL LYS SER TYR LEU ASN SEQRES 6 B 452 ILE PRO ALA ILE ILE SER ALA ALA GLU ILE THR GLY ALA SEQRES 7 B 452 VAL ALA ILE HIS PRO GLY TYR GLY PHE LEU SER GLU ASN SEQRES 8 B 452 ALA ASN PHE ALA GLU GLN VAL GLU ARG SER GLY PHE ILE SEQRES 9 B 452 PHE ILE GLY PRO LYS ALA GLU THR ILE ARG LEU MET GLY SEQRES 10 B 452 ASP LYS VAL SER ALA ILE ALA ALA MET LYS LYS ALA GLY SEQRES 11 B 452 VAL PRO CYS VAL PRO GLY SER ASP GLY PRO LEU GLY ASP SEQRES 12 B 452 ASP MET ASP LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY SEQRES 13 B 452 TYR PRO VAL ILE ILE LYS ALA SER GLY GLY GLY GLY GLY SEQRES 14 B 452 ARG GLY MET ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA SEQRES 15 B 452 GLN SER ILE SER MET THR ARG ALA GLU ALA LYS ALA ALA SEQRES 16 B 452 PHE SER ASN ASP MET VAL TYR MET GLU LYS TYR LEU GLU SEQRES 17 B 452 ASN PRO ARG HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY SEQRES 18 B 452 GLN GLY ASN ALA ILE TYR LEU ALA GLU ARG ASP CYS SER SEQRES 19 B 452 MET GLN ARG ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO SEQRES 20 B 452 ALA PRO GLY ILE THR PRO GLU LEU ARG ARG TYR ILE GLY SEQRES 21 B 452 GLU ARG CYS ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG SEQRES 22 B 452 GLY ALA GLY THR PHE GLU PHE LEU PHE GLU ASN GLY GLU SEQRES 23 B 452 PHE TYR PHE ILE LYS MET ASN THR ARG ILE GLN VAL GLU SEQRES 24 B 452 HIS PRO VAL THR GLU MET ILE THR GLY VAL ASP LEU ILE SEQRES 25 B 452 LYS GLU GLN LEU ARG ILE ALA ALA GLY GLN PRO LEU SER SEQRES 26 B 452 ILE LYS GLN GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL SEQRES 27 B 452 GLU CYS ARG ILE ASN ALA GLU ASP PRO ASN THR PHE LEU SEQRES 28 B 452 PRO SER PRO GLY LYS ILE THR ARG PHE HIS ALA PRO GLY SEQRES 29 B 452 GLY PHE GLY VAL ARG TRP GLU SER HIS ILE TYR ALA GLY SEQRES 30 B 452 TYR THR VAL PRO PRO TYR TYR ASP SER MET ILE GLY LYS SEQRES 31 B 452 LEU ILE CYS TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA SEQRES 32 B 452 ARG MET LYS ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY SEQRES 33 B 452 ILE LYS THR ASN VAL ASP LEU GLN ILE ARG ILE MET ASN SEQRES 34 B 452 ASP GLU ASN PHE GLN HIS GLY GLY THR ASN ILE HIS TYR SEQRES 35 B 452 LEU GLU LYS LYS LEU GLY LEU GLN GLU LYS HET ATP A1000 31 HET ATP B1001 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 HOH *130(H2 O) HELIX 1 1 ARG A 10 GLY A 25 1 16 HELIX 2 2 LEU A 39 ALA A 45 1 7 HELIX 3 3 PRO A 55 SER A 59 5 5 HELIX 4 4 ASN A 62 GLY A 74 1 13 HELIX 5 5 ASN A 88 SER A 98 1 11 HELIX 6 6 LYS A 106 ASP A 115 1 10 HELIX 7 7 ASP A 115 GLY A 127 1 13 HELIX 8 8 ASP A 141 GLY A 153 1 13 HELIX 9 9 GLY A 174 PHE A 193 1 20 HELIX 10 10 THR A 249 GLY A 268 1 20 HELIX 11 11 GLU A 296 GLY A 305 1 10 HELIX 12 12 ASP A 307 ALA A 317 1 11 HELIX 13 13 LYS A 324 VAL A 328 5 5 HELIX 14 14 ASN A 394 LEU A 409 1 16 HELIX 15 15 ASN A 417 ASN A 426 1 10 HELIX 16 16 ASP A 427 GLY A 433 1 7 HELIX 17 17 HIS A 438 LEU A 444 1 7 HELIX 18 18 ARG B 10 LEU B 24 1 15 HELIX 19 19 LEU B 39 ALA B 45 1 7 HELIX 20 20 PRO B 55 SER B 59 5 5 HELIX 21 21 ASN B 62 THR B 73 1 12 HELIX 22 22 ASN B 88 SER B 98 1 11 HELIX 23 23 LYS B 106 MET B 113 1 8 HELIX 24 24 ASP B 115 GLY B 127 1 13 HELIX 25 25 MET B 142 GLY B 153 1 12 HELIX 26 26 GLU B 177 ALA B 192 1 16 HELIX 27 27 THR B 249 GLY B 268 1 20 HELIX 28 28 GLU B 296 GLY B 305 1 10 HELIX 29 29 ASP B 307 ALA B 317 1 11 HELIX 30 30 LYS B 324 VAL B 328 5 5 HELIX 31 31 ASN B 394 LEU B 409 1 16 HELIX 32 32 ASN B 417 ASP B 427 1 11 HELIX 33 33 ASP B 427 GLY B 433 1 7 HELIX 34 34 HIS B 438 LEU B 444 1 7 SHEET 1 A 5 GLU A 47 GLY A 52 0 SHEET 2 A 5 LYS A 27 SER A 33 1 O THR A 28 N GLU A 47 SHEET 3 A 5 LYS A 4 ILE A 7 1 N ILE A 5 O LYS A 27 SHEET 4 A 5 ALA A 77 HIS A 79 1 O ALA A 77 N VAL A 6 SHEET 5 A 5 ILE A 101 PHE A 102 1 O ILE A 101 N ILE A 78 SHEET 1 B 3 MET A 169 VAL A 172 0 SHEET 2 B 3 VAL A 156 ALA A 160 -1 N VAL A 156 O VAL A 172 SHEET 3 B 3 VAL A 198 LYS A 202 -1 N TYR A 199 O LYS A 159 SHEET 1 C 8 GLU A 283 ASN A 290 0 SHEET 2 C 8 ARG A 270 GLU A 280 -1 N THR A 274 O ASN A 290 SHEET 3 C 8 ARG A 208 ASP A 217 -1 O ARG A 208 N PHE A 279 SHEET 4 C 8 ALA A 222 ARG A 234 -1 N ILE A 223 O LEU A 215 SHEET 5 C 8 GLN A 237 ALA A 243 -1 O GLN A 237 N ARG A 234 SHEET 6 C 8 HIS A 333 ASN A 340 -1 N ALA A 334 O ALA A 243 SHEET 7 C 8 MET A 384 GLY A 392 -1 N ILE A 385 O ILE A 339 SHEET 8 C 8 VAL A 365 SER A 369 -1 N ARG A 366 O ILE A 389 SHEET 1 D 2 GLY A 352 LYS A 353 0 SHEET 2 D 2 THR A 376 VAL A 377 -1 N VAL A 377 O GLY A 352 SHEET 1 E 2 ARG A 356 HIS A 358 0 SHEET 2 E 2 ILE A 410 ASP A 412 -1 N ILE A 410 O HIS A 358 SHEET 1 F 5 GLU B 47 GLY B 52 0 SHEET 2 F 5 LYS B 27 SER B 33 1 O THR B 28 N GLU B 47 SHEET 3 F 5 LYS B 4 ILE B 7 1 N ILE B 5 O LYS B 27 SHEET 4 F 5 ALA B 77 HIS B 79 1 O ALA B 77 N VAL B 6 SHEET 5 F 5 ILE B 101 PHE B 102 1 O ILE B 101 N ILE B 78 SHEET 1 G 3 MET B 169 VAL B 172 0 SHEET 2 G 3 VAL B 156 ALA B 160 -1 N VAL B 156 O VAL B 172 SHEET 3 G 3 VAL B 198 LYS B 202 -1 N TYR B 199 O LYS B 159 SHEET 1 H 8 GLU B 283 ASN B 290 0 SHEET 2 H 8 ARG B 270 GLU B 280 -1 N THR B 274 O ASN B 290 SHEET 3 H 8 ARG B 208 ASP B 217 -1 N ARG B 208 O PHE B 279 SHEET 4 H 8 ALA B 222 ARG B 234 -1 N ILE B 223 O LEU B 215 SHEET 5 H 8 GLN B 237 ALA B 243 -1 O GLN B 237 N ARG B 234 SHEET 6 H 8 HIS B 333 ASN B 340 -1 N ALA B 334 O ALA B 243 SHEET 7 H 8 MET B 384 GLY B 392 -1 N ILE B 385 O ILE B 339 SHEET 8 H 8 VAL B 365 SER B 369 -1 N ARG B 366 O ILE B 389 SHEET 1 I 2 GLY B 352 LYS B 353 0 SHEET 2 I 2 THR B 376 VAL B 377 -1 N VAL B 377 O GLY B 352 SHEET 1 J 2 ARG B 356 HIS B 358 0 SHEET 2 J 2 ILE B 410 ASP B 412 -1 N ILE B 410 O HIS B 358 CISPEP 1 TYR A 154 PRO A 155 0 -0.88 CISPEP 2 ALA A 243 PRO A 244 0 -0.40 CISPEP 3 TYR B 154 PRO B 155 0 -0.17 CISPEP 4 ALA B 243 PRO B 244 0 -2.49 SITE 1 AC1 16 LYS A 116 LYS A 159 GLY A 163 GLY A 164 SITE 2 AC1 16 GLY A 165 GLY A 166 MET A 169 GLU A 201 SITE 3 AC1 16 LYS A 202 TYR A 203 LEU A 204 HIS A 236 SITE 4 AC1 16 LEU A 278 ILE A 287 LYS A 288 ILE A 437 SITE 1 AC2 16 LYS B 116 LYS B 159 GLY B 163 GLY B 164 SITE 2 AC2 16 GLY B 165 GLY B 166 MET B 169 GLU B 201 SITE 3 AC2 16 LYS B 202 TYR B 203 LEU B 204 HIS B 236 SITE 4 AC2 16 GLU B 276 ILE B 287 LYS B 288 ILE B 437 CRYST1 81.300 115.500 122.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012300 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008170 0.00000