HEADER CALCIUM-DEPENDENT PROTEASE 15-MAY-97 1DVI TITLE CALPAIN DOMAIN VI WITH CALCIUM BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALPAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SMALL (REGULATORY) SUBUNIT, DOMAIN VI, RESIDUES 87 - 270; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELL_LINE: BL21; SOURCE 6 TISSUE: LIVER; SOURCE 7 GENE: CAPN4; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PT7; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PT7-7F-21K; SOURCE 13 EXPRESSION_SYSTEM_GENE: CAPN4 KEYWDS CALCIUM-DEPENDENT PROTEASE, SMALL SUBUNIT EXPDTA X-RAY DIFFRACTION AUTHOR M.CYGLER,H.BLANCHARD,P.GROCHULSKI REVDAT 4 07-FEB-24 1DVI 1 REMARK SEQADV LINK REVDAT 3 02-MAY-12 1DVI 1 COMPND VERSN REVDAT 2 24-FEB-09 1DVI 1 VERSN REVDAT 1 27-MAY-98 1DVI 0 JRNL AUTH H.BLANCHARD,P.GROCHULSKI,Y.LI,J.S.ARTHUR,P.L.DAVIES, JRNL AUTH 2 J.S.ELCE,M.CYGLER JRNL TITL STRUCTURE OF A CALPAIN CA(2+)-BINDING DOMAIN REVEALS A NOVEL JRNL TITL 2 EF-HAND AND CA(2+)-INDUCED CONFORMATIONAL CHANGES. JRNL REF NAT.STRUCT.BIOL. V. 4 532 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9228945 JRNL DOI 10.1038/NSB0797-532 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.BLANCHARD,Y.LI,M.CYGLER,C.M.KAY,J.S.ARTHUR,P.L.DAVIES, REMARK 1 AUTH 2 J.S.ELCE REMARK 1 TITL CA(2+)-BINDING DOMAIN VI OF RAT CALPAIN IS A HOMODIMER IN REMARK 1 TITL 2 SOLUTION: HYDRODYNAMIC, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 3 X-RAY DIFFRACTION STUDIES REMARK 1 REF PROTEIN SCI. V. 5 535 1996 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.GRAHAM-SIEGENTHALER,S.GAUTHIER,P.L.DAVIES,J.S.ELCE REMARK 1 TITL ACTIVE RECOMBINANT RAT CALPAIN II. BACTERIALLY PRODUCED REMARK 1 TITL 2 LARGE AND SMALL SUBUNITS ASSOCIATE BOTH IN VIVO AND IN VITRO REMARK 1 REF J.BIOL.CHEM. V. 269 30457 1994 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 16005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1605 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2188 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 243 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2810 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.430 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.690 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.650 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.270 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.520 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.12 ; 100 REMARK 3 GROUP 1 B-FACTOR (A**2) : 3.3 ; 3 REMARK 3 GROUP 2 POSITIONAL (A) : 0.28 ; 50 REMARK 3 GROUP 2 B-FACTOR (A**2) : 6.4 ; 4 REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : CA-PARAM19.ION REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : CA-TOP19.ION REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NCS GROUP 1 COMPRISES OF HELICAL REMARK 3 REGIONS, NCS GROUP 2 COMPRISES OF LOOP REGIONS REMARK 4 REMARK 4 1DVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-96 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: X-PLOR 3.843 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 8K, 50MM CACODYLATE PH. 6.5 , REMARK 280 10% GLYCEROL, 200MM CACL2, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.70000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.70000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.15000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.50000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.70000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.15000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.50000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.70000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 87 REMARK 465 HIS A 88 REMARK 465 TYR A 89 REMARK 465 SER A 90 REMARK 465 ASN A 91 REMARK 465 ILE A 92 REMARK 465 GLU A 93 REMARK 465 ALA A 94 REMARK 465 ASN A 95 REMARK 465 GLU A 96 REMARK 465 SER A 97 REMARK 465 MET B 87 REMARK 465 HIS B 88 REMARK 465 TYR B 89 REMARK 465 SER B 90 REMARK 465 ASN B 91 REMARK 465 ILE B 92 REMARK 465 GLU B 93 REMARK 465 ALA B 94 REMARK 465 ASN B 95 REMARK 465 GLU B 96 REMARK 465 SER B 97 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 98 CD OE1 OE2 REMARK 480 GLU A 99 CB CG CD OE1 OE2 REMARK 480 GLU A 100 CG CD OE1 OE2 REMARK 480 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 102 CD OE1 NE2 REMARK 480 GLN A 109 CG CD OE1 NE2 REMARK 480 ARG A 132 NE CZ NH1 NH2 REMARK 480 LYS A 137 CE NZ REMARK 480 ASN A 194 CB CG OD1 ND2 REMARK 480 GLU A 201 CD OE1 OE2 REMARK 480 HIS A 206 CB CG ND1 CD2 CE1 NE2 REMARK 480 GLU A 222 CB CG CD OE1 OE2 REMARK 480 THR A 223 OG1 CG2 REMARK 480 ARG A 246 NE CZ NH1 NH2 REMARK 480 ASN A 251 CG OD1 ND2 REMARK 480 THR A 253 OG1 CG2 REMARK 480 GLN A 257 CG CD OE1 NE2 REMARK 480 GLU A 262 CB CG CD OE1 OE2 REMARK 480 GLN A 265 CD OE1 NE2 REMARK 480 GLU B 98 CB CG CD OE1 OE2 REMARK 480 GLU B 99 CB CG CD OE1 OE2 REMARK 480 GLU B 100 CG CD OE1 OE2 REMARK 480 ARG B 101 CZ NH1 NH2 REMARK 480 GLN B 109 CD OE1 NE2 REMARK 480 LYS B 137 CE NZ REMARK 480 GLU B 164 CG CD OE1 OE2 REMARK 480 ARG B 182 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 187 CD NE CZ NH1 NH2 REMARK 480 GLN B 209 CD OE1 NE2 REMARK 480 ARG B 217 NE CZ NH1 NH2 REMARK 480 GLU B 222 CD OE1 OE2 REMARK 480 VAL B 258 CG1 CG2 REMARK 480 GLN B 265 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 327 O HOH A 328 0.08 REMARK 500 O HOH A 348 O HOH A 349 0.18 REMARK 500 O HOH A 332 O HOH A 333 0.18 REMARK 500 O HOH A 334 O HOH A 335 0.24 REMARK 500 O HOH B 346 O HOH B 347 0.24 REMARK 500 O HOH B 359 O HOH B 360 0.26 REMARK 500 O HOH A 329 O HOH A 355 0.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 324 O HOH B 342 5445 0.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 134 -3.14 -59.77 REMARK 500 PRO B 134 5.14 -62.98 REMARK 500 THR B 138 147.32 -178.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 271 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 111 O REMARK 620 2 ASP A 114 OD1 91.2 REMARK 620 3 GLU A 116 O 83.7 77.6 REMARK 620 4 GLU A 121 OE1 97.5 148.9 73.7 REMARK 620 5 GLU A 121 OE2 90.9 157.7 124.6 52.3 REMARK 620 6 HOH A 284 O 83.2 80.5 154.3 130.0 77.7 REMARK 620 7 HOH A 296 O 168.5 77.4 92.1 91.6 100.2 96.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 274 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 139 OD1 REMARK 620 2 ASP A 227 OD1 124.6 REMARK 620 3 ASP A 227 OD2 75.3 50.3 REMARK 620 4 ASP A 229 OD1 78.1 76.1 71.9 REMARK 620 5 ASP A 229 OD2 89.8 107.8 120.9 49.1 REMARK 620 6 ASN A 230 OD1 163.1 72.1 121.6 106.1 81.4 REMARK 620 7 HOH B 282 O 83.2 147.5 144.2 131.3 86.7 81.9 REMARK 620 8 HOH B 285 O 108.4 73.5 78.1 146.5 157.2 77.3 82.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 272 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 154 OD1 REMARK 620 2 ASP A 156 OD1 86.4 REMARK 620 3 THR A 158 OG1 91.9 76.5 REMARK 620 4 LYS A 160 O 87.1 153.3 77.8 REMARK 620 5 GLU A 165 OE1 113.9 120.0 149.0 86.2 REMARK 620 6 GLU A 165 OE2 94.3 77.5 152.8 128.9 46.8 REMARK 620 7 HOH A 275 O 167.9 86.3 77.0 95.1 78.2 93.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 273 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 184 OD1 REMARK 620 2 ASP A 186 OD1 85.4 REMARK 620 3 SER A 188 OG 84.2 84.7 REMARK 620 4 THR A 190 O 75.7 157.8 82.0 REMARK 620 5 GLU A 195 OE2 94.6 66.2 150.8 126.1 REMARK 620 6 GLU A 195 OE1 111.7 112.0 157.1 86.1 48.0 REMARK 620 7 HOH A 278 O 160.7 85.9 78.0 108.4 97.4 87.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 275 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 111 O REMARK 620 2 ASP B 114 OD1 91.0 REMARK 620 3 GLU B 116 O 85.9 76.4 REMARK 620 4 GLU B 121 OE1 100.0 149.4 76.0 REMARK 620 5 GLU B 121 OE2 92.4 159.3 124.1 49.3 REMARK 620 6 HOH B 302 O 86.8 68.1 143.6 140.4 91.8 REMARK 620 7 HOH B 314 O 169.1 79.7 97.3 90.9 94.3 84.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 278 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 139 OD1 REMARK 620 2 ASP B 227 OD1 123.7 REMARK 620 3 ASP B 227 OD2 77.3 48.6 REMARK 620 4 ASP B 229 OD1 78.0 75.0 75.7 REMARK 620 5 ASP B 229 OD2 91.4 106.2 125.2 49.5 REMARK 620 6 ASN B 230 OD1 160.9 75.3 121.7 107.6 79.5 REMARK 620 7 HOH B 301 O 74.4 157.1 138.4 125.8 85.5 88.0 REMARK 620 8 HOH B 315 O 98.4 75.2 65.6 140.8 167.2 88.7 89.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 276 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 154 OD1 REMARK 620 2 ASP B 156 OD1 81.2 REMARK 620 3 THR B 158 OG1 87.2 73.9 REMARK 620 4 LYS B 160 O 82.5 147.9 77.9 REMARK 620 5 GLU B 165 OE1 115.3 124.6 151.4 87.5 REMARK 620 6 GLU B 165 OE2 93.7 78.4 151.8 130.2 49.6 REMARK 620 7 HOH B 292 O 172.8 93.5 95.9 104.4 63.9 80.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 277 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 184 OD1 REMARK 620 2 ASP B 186 OD1 88.4 REMARK 620 3 SER B 188 OG 87.9 82.7 REMARK 620 4 THR B 190 O 80.0 159.2 79.7 REMARK 620 5 GLU B 195 OE1 115.8 115.8 149.0 85.0 REMARK 620 6 GLU B 195 OE2 98.9 68.8 150.3 129.9 50.1 REMARK 620 7 HOH B 295 O 169.1 97.2 83.6 91.8 70.1 91.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 278 DBREF 1DVI A 87 270 UNP Q64537 CPNS1_RAT 1 184 DBREF 1DVI B 87 270 UNP Q64537 CPNS1_RAT 1 184 SEQADV 1DVI SER A 146 UNP Q64537 CYS 60 CONFLICT SEQADV 1DVI SER B 146 UNP Q64537 CYS 60 CONFLICT SEQRES 1 A 184 MET HIS TYR SER ASN ILE GLU ALA ASN GLU SER GLU GLU SEQRES 2 A 184 GLU ARG GLN PHE ARG LYS LEU PHE VAL GLN LEU ALA GLY SEQRES 3 A 184 ASP ASP MET GLU VAL SER ALA THR GLU LEU MET ASN ILE SEQRES 4 A 184 LEU ASN LYS VAL VAL THR ARG HIS PRO ASP LEU LYS THR SEQRES 5 A 184 ASP GLY PHE GLY ILE ASP THR SER ARG SER MET VAL ALA SEQRES 6 A 184 VAL MET ASP SER ASP THR THR GLY LYS LEU GLY PHE GLU SEQRES 7 A 184 GLU PHE LYS TYR LEU TRP ASN ASN ILE LYS LYS TRP GLN SEQRES 8 A 184 GLY ILE TYR LYS ARG PHE ASP THR ASP ARG SER GLY THR SEQRES 9 A 184 ILE GLY SER ASN GLU LEU PRO GLY ALA PHE GLU ALA ALA SEQRES 10 A 184 GLY PHE HIS LEU ASN GLN HIS ILE TYR SER MET ILE ILE SEQRES 11 A 184 ARG ARG TYR SER ASP GLU THR GLY ASN MET ASP PHE ASP SEQRES 12 A 184 ASN PHE ILE SER CYS LEU VAL ARG LEU ASP ALA MET PHE SEQRES 13 A 184 ARG ALA PHE ARG SER LEU ASP LYS ASN GLY THR GLY GLN SEQRES 14 A 184 ILE GLN VAL ASN ILE GLN GLU TRP LEU GLN LEU THR MET SEQRES 15 A 184 TYR SER SEQRES 1 B 184 MET HIS TYR SER ASN ILE GLU ALA ASN GLU SER GLU GLU SEQRES 2 B 184 GLU ARG GLN PHE ARG LYS LEU PHE VAL GLN LEU ALA GLY SEQRES 3 B 184 ASP ASP MET GLU VAL SER ALA THR GLU LEU MET ASN ILE SEQRES 4 B 184 LEU ASN LYS VAL VAL THR ARG HIS PRO ASP LEU LYS THR SEQRES 5 B 184 ASP GLY PHE GLY ILE ASP THR SER ARG SER MET VAL ALA SEQRES 6 B 184 VAL MET ASP SER ASP THR THR GLY LYS LEU GLY PHE GLU SEQRES 7 B 184 GLU PHE LYS TYR LEU TRP ASN ASN ILE LYS LYS TRP GLN SEQRES 8 B 184 GLY ILE TYR LYS ARG PHE ASP THR ASP ARG SER GLY THR SEQRES 9 B 184 ILE GLY SER ASN GLU LEU PRO GLY ALA PHE GLU ALA ALA SEQRES 10 B 184 GLY PHE HIS LEU ASN GLN HIS ILE TYR SER MET ILE ILE SEQRES 11 B 184 ARG ARG TYR SER ASP GLU THR GLY ASN MET ASP PHE ASP SEQRES 12 B 184 ASN PHE ILE SER CYS LEU VAL ARG LEU ASP ALA MET PHE SEQRES 13 B 184 ARG ALA PHE ARG SER LEU ASP LYS ASN GLY THR GLY GLN SEQRES 14 B 184 ILE GLN VAL ASN ILE GLN GLU TRP LEU GLN LEU THR MET SEQRES 15 B 184 TYR SER HET CA A 271 1 HET CA A 272 1 HET CA A 273 1 HET CA A 274 1 HET CA B 275 1 HET CA B 276 1 HET CA B 277 1 HET CA B 278 1 HETNAM CA CALCIUM ION FORMUL 3 CA 8(CA 2+) FORMUL 11 HOH *196(H2 O) HELIX 1 1 GLU A 99 ASP A 114 1 16 HELIX 2 2 ALA A 119 ARG A 132 1 14 HELIX 3 3 ILE A 143 MET A 153 1 11 HELIX 4 4 PHE A 163 PHE A 183 1 21 HELIX 5 5 SER A 193 ALA A 202 1 10 HELIX 6 6 GLN A 209 TYR A 219 1 11 HELIX 7 7 PHE A 228 LEU A 248 1 21 HELIX 8 8 ILE A 260 MET A 268 1 9 HELIX 9 9 GLU B 99 ASP B 114 1 16 HELIX 10 10 ALA B 119 ARG B 132 1 14 HELIX 11 11 ILE B 143 MET B 153 1 11 HELIX 12 12 PHE B 163 ARG B 182 1 20 HELIX 13 13 SER B 193 ALA B 203 1 11 HELIX 14 14 GLN B 209 TYR B 219 1 11 HELIX 15 15 PHE B 228 LEU B 248 1 21 HELIX 16 16 ILE B 260 MET B 268 1 9 SHEET 1 A 2 ILE A 191 GLY A 192 0 SHEET 2 A 2 ASN A 225 MET A 226 -1 O MET A 226 N ILE A 191 SHEET 1 B 2 GLN A 255 VAL A 258 0 SHEET 2 B 2 ILE B 256 ASN B 259 -1 N ILE B 256 O VAL A 258 SHEET 1 C 2 ILE B 191 GLY B 192 0 SHEET 2 C 2 ASN B 225 MET B 226 -1 O MET B 226 N ILE B 191 LINK O ALA A 111 CA CA A 271 1555 1555 2.25 LINK OD1 ASP A 114 CA CA A 271 1555 1555 2.54 LINK O GLU A 116 CA CA A 271 1555 1555 2.26 LINK OE1 GLU A 121 CA CA A 271 1555 1555 2.50 LINK OE2 GLU A 121 CA CA A 271 1555 1555 2.50 LINK OD1 ASP A 139 CA CA A 274 1555 1555 2.32 LINK OD1 ASP A 154 CA CA A 272 1555 1555 2.38 LINK OD1 ASP A 156 CA CA A 272 1555 1555 2.44 LINK OG1 THR A 158 CA CA A 272 1555 1555 2.38 LINK O LYS A 160 CA CA A 272 1555 1555 2.20 LINK OE1 GLU A 165 CA CA A 272 1555 1555 2.51 LINK OE2 GLU A 165 CA CA A 272 1555 1555 2.87 LINK OD1 ASP A 184 CA CA A 273 1555 1555 2.41 LINK OD1 ASP A 186 CA CA A 273 1555 1555 2.45 LINK OG SER A 188 CA CA A 273 1555 1555 2.33 LINK O THR A 190 CA CA A 273 1555 1555 2.57 LINK OE2 GLU A 195 CA CA A 273 1555 1555 2.85 LINK OE1 GLU A 195 CA CA A 273 1555 1555 2.44 LINK OD1 ASP A 227 CA CA A 274 1555 1555 2.56 LINK OD2 ASP A 227 CA CA A 274 1555 1555 2.53 LINK OD1 ASP A 229 CA CA A 274 1555 1555 2.67 LINK OD2 ASP A 229 CA CA A 274 1555 1555 2.60 LINK OD1 ASN A 230 CA CA A 274 1555 1555 2.27 LINK CA CA A 271 O HOH A 284 1555 1555 2.46 LINK CA CA A 271 O HOH A 296 1555 1555 2.39 LINK CA CA A 272 O HOH A 275 1555 1555 2.46 LINK CA CA A 273 O HOH A 278 1555 1555 2.24 LINK CA CA A 274 O HOH B 282 1555 1555 2.26 LINK CA CA A 274 O HOH B 285 1555 1555 2.65 LINK O ALA B 111 CA CA B 275 1555 1555 2.23 LINK OD1 ASP B 114 CA CA B 275 1555 1555 2.42 LINK O GLU B 116 CA CA B 275 1555 1555 2.25 LINK OE1 GLU B 121 CA CA B 275 1555 1555 2.64 LINK OE2 GLU B 121 CA CA B 275 1555 1555 2.61 LINK OD1 ASP B 139 CA CA B 278 1555 1555 2.41 LINK OD1 ASP B 154 CA CA B 276 1555 1555 2.49 LINK OD1 ASP B 156 CA CA B 276 1555 1555 2.45 LINK OG1 THR B 158 CA CA B 276 1555 1555 2.49 LINK O LYS B 160 CA CA B 276 1555 1555 2.22 LINK OE1 GLU B 165 CA CA B 276 1555 1555 2.39 LINK OE2 GLU B 165 CA CA B 276 1555 1555 2.77 LINK OD1 ASP B 184 CA CA B 277 1555 1555 2.32 LINK OD1 ASP B 186 CA CA B 277 1555 1555 2.43 LINK OG SER B 188 CA CA B 277 1555 1555 2.36 LINK O THR B 190 CA CA B 277 1555 1555 2.48 LINK OE1 GLU B 195 CA CA B 277 1555 1555 2.42 LINK OE2 GLU B 195 CA CA B 277 1555 1555 2.70 LINK OD1 ASP B 227 CA CA B 278 1555 1555 2.69 LINK OD2 ASP B 227 CA CA B 278 1555 1555 2.61 LINK OD1 ASP B 229 CA CA B 278 1555 1555 2.61 LINK OD2 ASP B 229 CA CA B 278 1555 1555 2.61 LINK OD1 ASN B 230 CA CA B 278 1555 1555 2.30 LINK CA CA B 275 O HOH B 302 1555 1555 2.41 LINK CA CA B 275 O HOH B 314 1555 1555 2.47 LINK CA CA B 276 O HOH B 292 1555 1555 2.51 LINK CA CA B 277 O HOH B 295 1555 1555 2.31 LINK CA CA B 278 O HOH B 301 1555 1555 2.46 LINK CA CA B 278 O HOH B 315 1555 1555 2.58 SITE 1 AC1 6 ALA A 111 ASP A 114 GLU A 116 GLU A 121 SITE 2 AC1 6 HOH A 284 HOH A 296 SITE 1 AC2 6 ASP A 154 ASP A 156 THR A 158 LYS A 160 SITE 2 AC2 6 GLU A 165 HOH A 275 SITE 1 AC3 6 ASP A 184 ASP A 186 SER A 188 THR A 190 SITE 2 AC3 6 GLU A 195 HOH A 278 SITE 1 AC4 6 ASP A 139 ASP A 227 ASP A 229 ASN A 230 SITE 2 AC4 6 HOH B 282 HOH B 285 SITE 1 AC5 6 ALA B 111 ASP B 114 GLU B 116 GLU B 121 SITE 2 AC5 6 HOH B 302 HOH B 314 SITE 1 AC6 6 ASP B 154 ASP B 156 THR B 158 LYS B 160 SITE 2 AC6 6 GLU B 165 HOH B 292 SITE 1 AC7 6 ASP B 184 ASP B 186 SER B 188 THR B 190 SITE 2 AC7 6 GLU B 195 HOH B 295 SITE 1 AC8 6 ASP B 139 ASP B 227 ASP B 229 ASN B 230 SITE 2 AC8 6 HOH B 301 HOH B 315 CRYST1 75.000 87.400 118.300 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013333 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008453 0.00000 MTRIX1 1 0.997267 -0.010967 -0.073069 -15.28060 1 MTRIX2 1 0.006032 0.997707 -0.067414 12.44680 1 MTRIX3 1 0.073640 0.066789 0.995046 -64.90500 1