HEADER HYDROLASE 05-DEC-99 1DWA TITLE STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 1: STRUCTURE TITLE 2 PRIOR TO IRRADIATION CAVEAT 1DWA MAN C 6 HAS WRONG CHIRALITY AT ATOM C5 NAG M 918 HAS WRONG CAVEAT 2 1DWA CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYROSINASE MA1; COMPND 3 CHAIN: M; COMPND 4 FRAGMENT: RESIDUES 3-501; COMPND 5 SYNONYM: THIOGLUCOSIDE GLUCOHYDROLASE, SINIGRINASE, THIOGLUCOSIDASE; COMPND 6 EC: 3.2.1.147; COMPND 7 OTHER_DETAILS: STRUCTURE PRIOR TO IRRADIATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINAPIS ALBA; SOURCE 3 ORGANISM_COMMON: WHITE MUSTARD; SOURCE 4 ORGANISM_TAXID: 3728; SOURCE 5 STRAIN: EMERGO; SOURCE 6 ORGAN: SEED; SOURCE 7 CELL: MYROSIN CELLS; SOURCE 8 CELLULAR_LOCATION: MYROSIN GRAINS KEYWDS GLYCOSIDASE, RADIOLYSIS, CRYO-COOLED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.P.BURMEISTER REVDAT 9 23-OCT-24 1DWA 1 REMARK REVDAT 8 13-DEC-23 1DWA 1 HETSYN LINK REVDAT 7 29-JUL-20 1DWA 1 CAVEAT COMPND REMARK HETNAM REVDAT 7 2 1 LINK SITE ATOM REVDAT 6 08-MAY-19 1DWA 1 REMARK REVDAT 5 12-JUL-17 1DWA 1 REVDAT 4 13-JUL-11 1DWA 1 VERSN REVDAT 3 02-JUN-09 1DWA 1 HEADER KEYWDS SEQADV REVDAT 2 24-FEB-09 1DWA 1 VERSN REVDAT 1 03-MAR-00 1DWA 0 JRNL AUTH W.P.BURMEISTER JRNL TITL STRUCTURAL CHANGES IN A CRYO-COOLED PROTEIN CRYSTAL DUE TO JRNL TITL 2 RADIATION DAMAGE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 328 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10713520 JRNL DOI 10.1107/S0907444999016261 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.P.BURMEISTER,S.COTTAZ,H.DRIGUEZ,R.IORI,S.PALMIERI, REMARK 1 AUTH 2 B.HENRISSAT REMARK 1 TITL THE CRYSTAL STRUCTURES OF SINAPIS ALBA MYROSINASE AND A REMARK 1 TITL 2 COVALENT GLYCOSYL-ENZYME INTERMEDIATE PROVIDE INSIGHTS INTO REMARK 1 TITL 3 THE SUBSTRATE RECOGNITION AND ACTIVE-SIDE MACHINERY OF AN REMARK 1 TITL 4 S-GLYCOSIDASE REMARK 1 REF STRUCTURE V. 5 663 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 9195886 REMARK 1 DOI 10.1016/S0969-2126(97)00221-9 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2783 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4632 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 248 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 349 REMARK 3 SOLVENT ATOMS : 788 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.029 REMARK 3 BOND ANGLES (DEGREES) : 3.002 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.600 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.800 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.900 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.800 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.900 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ONLY AN INDIVIDUAL TEMPERATURE FACTOR REMARK 3 REFINEMENT, AN OVERALL TEMPERATURE FACTOR REFINEMENT AND AN REMARK 3 OCCUPANCY REFINEMENT HAVE BEEN USED. THE AIM OF THE STUDY IS TO REMARK 3 LOOK AT THE EVOLUTION OF THE OCCUPANCY OF GROUPS SENSITIVE TO REMARK 3 RADIATION DAMAGE. THE MODEL IS NOT SUPPOSED TO BE USED AS A REMARK 3 MODEL OF MYROSINASE. A MODEL REPLACING ENTRY 1MYR WILL BE REMARK 3 DEPOSITED LATER. NO COORDINATES ARE GIVEN FOR RESIDUES 1 - 2. REMARK 3 PRO 501 IS THE LAST RESIDUE SEEN IN ELECTRON DENSITY. THE REMARK 3 PROTEIN COULD EXTEND BEYOND PRO 501. THE OCCUPANCY OF CERTAIN REMARK 3 GROUPS WHICH ARE SENSITIVE TO RADIATION DAMAGE HAS BEEN REFINED. REMARK 3 DUE TO THIS REFINEMENT OCCUPANCIES DIFFERENT OR EVEN BIGGER THAT REMARK 3 1.0 ARE PRESENT IN THE STRUCTURE. REMARK 4 REMARK 4 1DWA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1290004436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9475 REMARK 200 MONOCHROMATOR : C(111), GE(220) REMARK 200 OPTICS : BENT MULTILAYER MIRROR, REMARK 200 SAGITALLY FOCUSING CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51408 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 34.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14200 REMARK 200 R SYM FOR SHELL (I) : 0.14200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1MYR REMARK 200 REMARK 200 REMARK: DOSE 0.1*10E15 PHOTONS/MM2 USED FOR DATA COLLECTION, I/ REMARK 200 SIGMA VALUES ARE STRONGLY AFFECTED BY A FEW ZINGERS ON THE REMARK 200 DETECTOR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP METHOD, 12 MG/ML PROTEIN REMARK 280 IN 30 MM HEPES, PH 6.5, 0.05 % NAN3 PRECIPITANT 66% SATURATED REMARK 280 AMMONIUM SULFATE, 100MM TRIS-HCL, PH 6.50, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.15000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.20000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.15000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.20000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -224.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 134.30000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 120.45000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS ENTRY IS THE FIRST STRUCTURE OF A SERIES OF STRUCTURES REMARK 400 IN A STUDY ON RADIATION DAMAGE IN CRYO-COOLED CRYSTALS. IT REMARK 400 HAS BEEN COLLECTED PRIOR TO IRRADIATION USING A LOW DOSE OF REMARK 400 0.1*10E15 PHOTONS/MM2. THERE ARE OTHER RELATED ENTRIES REMARK 400 CORRESPONDING TO THE STRUCTURE AFTER DIFFERENT RADIATION REMARK 400 DOSES. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH M 1750 O HOH M 1758 0.87 REMARK 500 O PHE M 12 O HOH M 1001 1.06 REMARK 500 C6 MAN C 6 O HOH M 1006 1.14 REMARK 500 OD2 ASP M 431 O HOH M 1002 1.32 REMARK 500 O HOH M 1291 O HOH M 1668 1.36 REMARK 500 O HOH M 1465 O HOH M 1670 1.37 REMARK 500 NZ LYS M 375 O HOH M 1003 1.47 REMARK 500 O HOH M 1588 O HOH M 1604 1.56 REMARK 500 CE LYS M 375 O HOH M 1003 1.60 REMARK 500 CD2 HIS M 365 O HOH M 1015 1.63 REMARK 500 ND2 ASN M 218 C1 NAG A 1 1.65 REMARK 500 ND2 ASN M 265 C1 NAG B 1 1.65 REMARK 500 ND2 ASN M 292 C1 NAG C 1 1.65 REMARK 500 OD1 ASP M 431 O HOH M 1004 1.66 REMARK 500 O TYR M 215 O HOH M 1005 1.69 REMARK 500 O HOH M 1087 O HOH M 1573 1.70 REMARK 500 C1 GOL M 932 O HOH M 1011 1.71 REMARK 500 ND2 ASN M 90 C1 NAG M 902 1.72 REMARK 500 ND2 ASN M 21 C1 NAG M 901 1.75 REMARK 500 ND2 ASN M 244 C1 NAG M 905 1.77 REMARK 500 O HOH M 1103 O HOH M 1390 1.79 REMARK 500 O6 MAN C 6 O HOH M 1006 1.81 REMARK 500 O HOH M 1004 O HOH M 1406 1.83 REMARK 500 OD2 ASP M 150 O HOH M 1007 1.88 REMARK 500 O GLY M 53 O HOH M 1008 1.90 REMARK 500 O HOH M 1003 O HOH M 1543 1.90 REMARK 500 O HOH M 1099 O HOH M 1724 1.90 REMARK 500 O2 SO4 M 926 O2 SO4 M 931 1.91 REMARK 500 C2 GOL M 932 O HOH M 1011 1.91 REMARK 500 CA GLY M 15 O HOH M 1077 1.93 REMARK 500 CE1 TYR M 477 O HOH M 1021 1.94 REMARK 500 CE2 TYR M 427 O HOH M 1022 1.95 REMARK 500 O HOH M 1109 O HOH M 1115 1.95 REMARK 500 O HOH M 1095 O HOH M 1578 1.96 REMARK 500 OE1 GLU M 151 O HOH M 1009 1.97 REMARK 500 O1 SO4 M 931 O HOH M 1010 2.00 REMARK 500 O2 GOL M 932 O HOH M 1011 2.01 REMARK 500 O HOH M 1316 O HOH M 1765 2.02 REMARK 500 C5 MAN C 6 O HOH M 1006 2.03 REMARK 500 O3 FUC C 7 O HOH M 1012 2.06 REMARK 500 O HOH M 1017 O HOH M 1608 2.06 REMARK 500 O6 BMA C 3 C5 MAN C 6 2.09 REMARK 500 O HOH M 1340 O HOH M 1534 2.09 REMARK 500 O3 NAG A 1 O HOH M 1013 2.10 REMARK 500 O HOH M 1197 O HOH M 1763 2.10 REMARK 500 O HOH M 1286 O HOH M 1651 2.10 REMARK 500 O HOH M 1327 O HOH M 1406 2.11 REMARK 500 OD2 ASP M 70 O HOH M 1014 2.11 REMARK 500 CZ ARG M 472 O HOH M 1021 2.12 REMARK 500 NE2 HIS M 365 O HOH M 1015 2.14 REMARK 500 REMARK 500 THIS ENTRY HAS 68 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ZN ZN M 923 ZN ZN M 923 3656 1.10 REMARK 500 O HOH M 1009 O HOH M 1009 3656 1.10 REMARK 500 O HOH M 1720 O HOH M 1720 4576 1.42 REMARK 500 O HOH M 1576 O HOH M 1576 4576 1.44 REMARK 500 O HOH M 1174 O HOH M 1174 4576 1.63 REMARK 500 O HOH M 1663 O HOH M 1663 4576 1.63 REMARK 500 O HOH M 1046 O HOH M 1075 6564 1.71 REMARK 500 O HOH M 1436 O HOH M 1629 3656 1.76 REMARK 500 N GLY M 45 O ARG M 57 3656 1.95 REMARK 500 O HOH M 1330 O HOH M 1461 4576 2.01 REMARK 500 O LYS M 375 CD LYS M 375 4576 2.04 REMARK 500 O HOH M 1496 O HOH M 1620 6564 2.06 REMARK 500 CG2 THR M 379 O HOH M 1108 4576 2.07 REMARK 500 O HOH M 1174 O HOH M 1519 4576 2.08 REMARK 500 OG1 THR M 43 O HIS M 56 3656 2.10 REMARK 500 O HOH M 1180 O HOH M 1555 3656 2.12 REMARK 500 O HOH M 1497 O HOH M 1497 4576 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS M 6 CB CYS M 6 SG -0.150 REMARK 500 THR M 13 C THR M 13 O -0.185 REMARK 500 ASN M 16 CG ASN M 16 ND2 0.317 REMARK 500 SER M 24 CB SER M 24 OG 0.091 REMARK 500 GLU M 115 CD GLU M 115 OE2 0.075 REMARK 500 SER M 178 CB SER M 178 OG 0.116 REMARK 500 TYR M 264 CE1 TYR M 264 CZ -0.283 REMARK 500 TYR M 264 CZ TYR M 264 OH 0.343 REMARK 500 LYS M 356 CE LYS M 356 NZ -0.277 REMARK 500 SER M 423 CB SER M 423 OG 0.128 REMARK 500 PRO M 501 CA PRO M 501 C 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP M 74 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 PHE M 76 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG M 109 NH1 - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG M 109 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 GLU M 115 OE1 - CD - OE2 ANGL. DEV. = -18.3 DEGREES REMARK 500 ASP M 169 OD1 - CG - OD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP M 169 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP M 169 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP M 169 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG M 194 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG M 242 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 THR M 246 OG1 - CB - CG2 ANGL. DEV. = -14.7 DEGREES REMARK 500 TYR M 264 CD1 - CE1 - CZ ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR M 264 OH - CZ - CE2 ANGL. DEV. = -20.3 DEGREES REMARK 500 TYR M 264 CE1 - CZ - CE2 ANGL. DEV. = 18.6 DEGREES REMARK 500 TYR M 264 CZ - CE2 - CD2 ANGL. DEV. = -11.0 DEGREES REMARK 500 ASP M 266 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP M 268 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG M 269 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG M 269 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLU M 372 OE1 - CD - OE2 ANGL. DEV. = -12.2 DEGREES REMARK 500 GLU M 372 CG - CD - OE2 ANGL. DEV. = 13.1 DEGREES REMARK 500 TYR M 427 CG - CD1 - CE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 CYS M 434 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP M 448 OD1 - CG - OD2 ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP M 448 CB - CG - OD2 ANGL. DEV. = -16.8 DEGREES REMARK 500 ASN M 482 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 ASN M 482 CB - CG - OD1 ANGL. DEV. = 12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR M 72 -139.27 46.75 REMARK 500 HIS M 141 52.19 -107.43 REMARK 500 TRP M 142 -14.10 84.57 REMARK 500 TYR M 152 15.91 -146.04 REMARK 500 THR M 184 -76.02 -81.69 REMARK 500 GLN M 187 82.47 39.11 REMARK 500 ASN M 218 103.90 -160.79 REMARK 500 ASP M 426 57.02 -93.18 REMARK 500 ASN M 466 -15.02 74.06 REMARK 500 ASN M 482 89.03 -162.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR M 13 -12.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH M1788 DISTANCE = 6.33 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 1 REMARK 610 NAG B 1 REMARK 610 NAG C 1 REMARK 610 NAG M 901 REMARK 610 NAG M 902 REMARK 610 NAG M 905 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M 923 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 56 NE2 REMARK 620 2 HIS M 56 NE2 0.0 REMARK 620 3 ASP M 70 OD2 117.5 117.5 REMARK 620 4 ASP M 70 OD1 84.0 84.0 48.8 REMARK 620 5 ASP M 70 OD2 117.5 117.5 0.0 48.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MYR RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA REMARK 900 RELATED ID: 1DWF RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 2: REMARK 900 STRUCTURE AFTER IRRADIATION WITH 9.1*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1DWG RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL: PART 3: REMARK 900 STRUCTURE AFTER IRRADIATION WITH 18.2*10E15 PHOTONS/MM2. REMARK 900 RELATED ID: 1DWH RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 4: REMARK 900 STRUCTURE AFTER IRRADIATION WITH 27.2*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1DWI RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 5: REMARK 900 STRUCTURE AFTER IRRADIATION WITH 54.0*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1DWJ RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. REFINED PART 6: REMARK 900 STRUCTURE AFTER A RADIATION DOSE OF 54*10E15 PHOTONS/MM2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE SOME DISCREPANCIES IN THE SEQUENCE COMPARED TO REMARK 999 ENTRY 1MYR AS THE X-RAY SEQUENCE HAS BEEN CORRECTED WHEN REMARK 999 HIGHER RESOLUTION DATA (1.2 A) BECAME AVAILABLE. REMARK 999 THE SEQUENCE OF 1MYR (DETERMINED FROM THE X-RAY STRUCTURE) IS REMARK 999 ESSENTIALLY IDENTICAL TO A PARTIAL SEQUENCE OF A MYROSINASE REMARK 999 FROM SINAPIS ALBA (SWISS-PROT P29736). THE NUCLEOTIDE SEQUENCE REMARK 999 OF THE GENE ENCODING THE CRYSTALLIZED ENZYME WAS NOT DETERMINED. REMARK 999 SIGNIFICANT DIFFERENCES BEYOND THE UNCERTAINTY OF A SEQUENCE REMARK 999 DETERMINED FROM A CRYSTAL STRUCTURE SHOW THAT THE ISOENZYME REMARK 999 WHICH IS PRESENT IN THE DEPOSITORS' CRYSTALS IS DIFFERENT FROM REMARK 999 THAT WHOSE PARTIAL SEQUENCE IS KNOWN. THE DEPOSITORS' SEQUENCE REMARK 999 IS ABOUT 70% IDENTICAL TO THE ONLY KNOWN FULL-LENGTH SEQUENCE REMARK 999 OF ANOTHER MYROSINASE ISOZYME FROM SINAPIS ALBA (SWISS-PROT REMARK 999 P29092). ALL KNOWN MYROSINASE SEQUENCES (FROM SINAPSIS ALBA REMARK 999 OR FROM OTHER CRUCIFERAE) ARE LONGER THAN 1MYR AT THEIR REMARK 999 C-TERMINUS BY APPROXIMATELY 25 RESIDUES. IT IS THEREFORE REMARK 999 POSSIBLE THAT THE SEQUENCE OF 1MYR IS ACTUALLY LONGER THAN THAT REMARK 999 SEEN IN THE X-RAY STRUCTURE. DBREF 1DWA M 3 501 UNP P29736 MYRA_SINAL 3 501 SEQADV 1DWA THR M 497 UNP P29736 SER 497 SEE REMARK 999 SEQRES 1 M 499 GLU ILE THR CYS GLN GLU ASN LEU PRO PHE THR CYS GLY SEQRES 2 M 499 ASN THR ASP ALA LEU ASN SER SER SER PHE SER SER ASP SEQRES 3 M 499 PHE ILE PHE GLY VAL ALA SER SER ALA TYR GLN ILE GLU SEQRES 4 M 499 GLY THR ILE GLY ARG GLY LEU ASN ILE TRP ASP GLY PHE SEQRES 5 M 499 THR HIS ARG TYR PRO ASN LYS SER GLY PRO ASP HIS GLY SEQRES 6 M 499 ASN GLY ASP THR THR CYS ASP SER PHE SER TYR TRP GLN SEQRES 7 M 499 LYS ASP ILE ASP VAL LEU ASP GLU LEU ASN ALA THR GLY SEQRES 8 M 499 TYR ARG PHE SER ILE ALA TRP SER ARG ILE ILE PRO ARG SEQRES 9 M 499 GLY LYS ARG SER ARG GLY VAL ASN GLU LYS GLY ILE ASP SEQRES 10 M 499 TYR TYR HIS GLY LEU ILE SER GLY LEU ILE LYS LYS GLY SEQRES 11 M 499 ILE THR PRO PHE VAL THR LEU PHE HIS TRP ASP LEU PRO SEQRES 12 M 499 GLN THR LEU GLN ASP GLU TYR GLU GLY PHE LEU ASP PRO SEQRES 13 M 499 GLN ILE ILE ASP ASP PHE LYS ASP TYR ALA ASP LEU CYS SEQRES 14 M 499 PHE GLU GLU PHE GLY ASP SER VAL LYS TYR TRP LEU THR SEQRES 15 M 499 ILE ASN GLN LEU TYR SER VAL PRO THR ARG GLY TYR GLY SEQRES 16 M 499 SER ALA LEU ASP ALA PRO GLY ARG CYS SER PRO THR VAL SEQRES 17 M 499 ASP PRO SER CYS TYR ALA GLY ASN SER SER THR GLU PRO SEQRES 18 M 499 TYR ILE VAL ALA HIS HIS GLN LEU LEU ALA HIS ALA LYS SEQRES 19 M 499 VAL VAL ASP LEU TYR ARG LYS ASN TYR THR HIS GLN GLY SEQRES 20 M 499 GLY LYS ILE GLY PRO THR MET ILE THR ARG TRP PHE LEU SEQRES 21 M 499 PRO TYR ASN ASP THR ASP ARG HIS SER ILE ALA ALA THR SEQRES 22 M 499 GLU ARG MET LYS GLU PHE PHE LEU GLY TRP PHE MET GLY SEQRES 23 M 499 PRO LEU THR ASN GLY THR TYR PRO GLN ILE MET ILE ASP SEQRES 24 M 499 THR VAL GLY GLU ARG LEU PRO SER PHE SER PRO GLU GLU SEQRES 25 M 499 SER ASN LEU VAL LYS GLY SER TYR ASP PHE LEU GLY LEU SEQRES 26 M 499 ASN TYR TYR PHE THR GLN TYR ALA GLN PRO SER PRO ASN SEQRES 27 M 499 PRO VAL ASN SER THR ASN HIS THR ALA MET MET ASP ALA SEQRES 28 M 499 GLY ALA LYS LEU THR TYR ILE ASN ALA SER GLY HIS TYR SEQRES 29 M 499 ILE GLY PRO LEU PHE GLU LYS ASP LYS ALA ASP SER THR SEQRES 30 M 499 ASP ASN ILE TYR TYR TYR PRO LYS GLY ILE TYR SER VAL SEQRES 31 M 499 MET ASP TYR PHE LYS ASN LYS TYR TYR ASN PRO LEU ILE SEQRES 32 M 499 TYR VAL THR GLU ASN GLY ILE SER THR PRO GLY ASP GLU SEQRES 33 M 499 ASN ARG ASN GLN SER MET LEU ASP TYR THR ARG ILE ASP SEQRES 34 M 499 TYR LEU CYS SER HIS LEU CYS PHE LEU ASN LYS VAL ILE SEQRES 35 M 499 LYS GLU LYS ASP VAL ASN VAL LYS GLY TYR LEU ALA TRP SEQRES 36 M 499 ALA LEU GLY ASP ASN TYR GLU PHE ASN LYS GLY PHE THR SEQRES 37 M 499 VAL ARG PHE GLY LEU SER TYR ILE ASP TRP ASN ASN VAL SEQRES 38 M 499 THR ASP ARG ASP LEU LYS LYS SER GLY GLN TRP TYR GLN SEQRES 39 M 499 THR PHE ILE SER PRO MODRES 1DWA ASN M 21 ASN GLYCOSYLATION SITE MODRES 1DWA ASN M 60 ASN GLYCOSYLATION SITE MODRES 1DWA ASN M 90 ASN GLYCOSYLATION SITE MODRES 1DWA ASN M 218 ASN GLYCOSYLATION SITE MODRES 1DWA ASN M 244 ASN GLYCOSYLATION SITE MODRES 1DWA ASN M 265 ASN GLYCOSYLATION SITE MODRES 1DWA ASN M 292 ASN GLYCOSYLATION SITE MODRES 1DWA ASN M 346 ASN GLYCOSYLATION SITE MODRES 1DWA ASN M 361 ASN GLYCOSYLATION SITE MODRES 1DWA ASN M 482 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET XYP B 4 9 HET FUC B 5 10 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET XYP C 4 9 HET MAN C 5 11 HET MAN C 6 11 HET FUC C 7 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG M 901 14 HET NAG M 902 14 HET NAG M 905 14 HET NAG M 918 14 HET NAG M 919 14 HET NAG M 922 14 HET ZN M 923 1 HET SO4 M 924 5 HET SO4 M 925 5 HET SO4 M 926 5 HET SO4 M 927 5 HET SO4 M 928 5 HET SO4 M 929 5 HET SO4 M 930 5 HET SO4 M 931 5 HET GOL M 932 6 HET GOL M 933 6 HET GOL M 934 6 HET GOL M 935 6 HET GOL M 936 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 14(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 XYP 2(C5 H10 O5) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 4 MAN 2(C6 H12 O6) FORMUL 12 ZN ZN 2+ FORMUL 13 SO4 8(O4 S 2-) FORMUL 21 GOL 5(C3 H8 O3) FORMUL 26 HOH *788(H2 O) HELIX 1 AA1 ASN M 21 PHE M 25 5 5 HELIX 2 AA2 SER M 36 GLU M 41 1 6 HELIX 3 AA3 ASN M 49 TYR M 58 1 10 HELIX 4 AA4 TYR M 58 GLY M 63 1 6 HELIX 5 AA5 ASP M 74 ASN M 90 1 17 HELIX 6 AA6 ALA M 99 ILE M 104 1 6 HELIX 7 AA7 LYS M 108 GLY M 112 5 5 HELIX 8 AA8 ASN M 114 LYS M 131 1 18 HELIX 9 AA9 PRO M 145 GLU M 153 1 9 HELIX 10 AB1 GLY M 154 PRO M 158 5 5 HELIX 11 AB2 GLN M 159 GLY M 176 1 18 HELIX 12 AB3 TYR M 189 GLY M 197 1 9 HELIX 13 AB4 THR M 221 TYR M 245 1 25 HELIX 14 AB5 THR M 246 GLY M 249 5 4 HELIX 15 AB6 ASP M 268 LEU M 283 1 16 HELIX 16 AB7 LEU M 283 GLY M 293 1 11 HELIX 17 AB8 PRO M 296 GLY M 304 1 9 HELIX 18 AB9 GLU M 305 LEU M 307 5 3 HELIX 19 AC1 SER M 311 LYS M 319 1 9 HELIX 20 AC2 THR M 348 ALA M 353 5 6 HELIX 21 AC3 ASP M 377 ASN M 381 5 5 HELIX 22 AC4 PRO M 386 TYR M 400 1 15 HELIX 23 AC5 ASN M 419 LEU M 425 1 7 HELIX 24 AC6 ASP M 426 ASP M 448 1 23 HELIX 25 AC7 LYS M 489 SER M 500 1 12 SHEET 1 AA1 9 LYS M 251 GLY M 253 0 SHEET 2 AA1 9 TYR M 181 ILE M 185 1 N TRP M 182 O LYS M 251 SHEET 3 AA1 9 THR M 134 PHE M 140 1 N LEU M 139 O LEU M 183 SHEET 4 AA1 9 GLY M 93 SER M 97 1 N PHE M 96 O THR M 138 SHEET 5 AA1 9 ILE M 30 ALA M 34 1 N VAL M 33 O ARG M 95 SHEET 6 AA1 9 VAL M 451 TRP M 457 1 O ALA M 456 N GLY M 32 SHEET 7 AA1 9 ILE M 405 GLU M 409 1 N VAL M 407 O GLY M 453 SHEET 8 AA1 9 LEU M 325 PRO M 337 1 N LEU M 327 O TYR M 406 SHEET 9 AA1 9 THR M 255 PRO M 263 1 N MET M 256 O ASN M 328 SHEET 1 AA2 9 LYS M 251 GLY M 253 0 SHEET 2 AA2 9 TYR M 181 ILE M 185 1 N TRP M 182 O LYS M 251 SHEET 3 AA2 9 THR M 134 PHE M 140 1 N LEU M 139 O LEU M 183 SHEET 4 AA2 9 GLY M 93 SER M 97 1 N PHE M 96 O THR M 138 SHEET 5 AA2 9 ILE M 30 ALA M 34 1 N VAL M 33 O ARG M 95 SHEET 6 AA2 9 VAL M 451 TRP M 457 1 O ALA M 456 N GLY M 32 SHEET 7 AA2 9 ILE M 405 GLU M 409 1 N VAL M 407 O GLY M 453 SHEET 8 AA2 9 LEU M 325 PRO M 337 1 N LEU M 327 O TYR M 406 SHEET 9 AA2 9 ALA M 355 THR M 358 -1 O THR M 358 N TYR M 334 SHEET 1 AA3 2 LEU M 370 GLU M 372 0 SHEET 2 AA3 2 ILE M 382 TYR M 383 -1 O ILE M 382 N PHE M 371 SHEET 1 AA4 2 THR M 414 PRO M 415 0 SHEET 2 AA4 2 VAL M 471 ARG M 472 -1 O ARG M 472 N THR M 414 SHEET 1 AA5 2 SER M 476 ASP M 479 0 SHEET 2 AA5 2 ASN M 482 LEU M 488 -1 O ASP M 487 N TYR M 477 SSBOND 1 CYS M 6 CYS M 438 1555 1555 2.54 SSBOND 2 CYS M 14 CYS M 434 1555 1555 2.24 SSBOND 3 CYS M 206 CYS M 214 1555 1555 2.02 LINK ND2 ASN M 60 C1 NAG M 918 1555 1555 1.47 LINK ND2 ASN M 346 C1 NAG M 919 1555 1555 1.51 LINK ND2 ASN M 361 C1 NAG D 1 1555 1555 1.47 LINK ND2 ASN M 482 C1 NAG M 922 1555 1555 1.49 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.30 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O3 NAG B 1 C1 FUC B 5 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.40 LINK O2 BMA B 3 C1 XYP B 4 1555 1555 1.38 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O3 NAG C 1 C1 FUC C 7 1555 1555 1.41 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.36 LINK O2 BMA C 3 C1 XYP C 4 1555 1555 1.46 LINK O3 BMA C 3 C1 MAN C 5 1555 1555 1.42 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK NE2 HIS M 56 ZN ZN M 923 1555 1555 2.01 LINK NE2 HIS M 56 ZN ZN M 923 1555 3656 1.72 LINK OD2 ASP M 70 ZN ZN M 923 1555 1555 1.99 LINK OD1 ASP M 70 ZN ZN M 923 1555 3656 2.15 LINK OD2 ASP M 70 ZN ZN M 923 1555 3656 1.71 CISPEP 1 LEU M 10 PRO M 11 0 -2.61 CISPEP 2 ALA M 202 PRO M 203 0 3.20 CISPEP 3 TRP M 457 ALA M 458 0 -2.64 CRYST1 134.300 136.400 80.300 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012453 0.00000