data_1DXY # _entry.id 1DXY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DXY pdb_00001dxy 10.2210/pdb1dxy/pdb WWPDB D_1000172961 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DXY _pdbx_database_status.recvd_initial_deposition_date 1996-08-13 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dengler, U.' 1 'Niefind, K.' 2 'Kiess, M.' 3 'Schomburg, D.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structure of a ternary complex of D-2-hydroxyisocaproate dehydrogenase from Lactobacillus casei, NAD+ and 2-oxoisocaproate at 1.9 A resolution. ; J.Mol.Biol. 267 640 660 1997 JMOBAK UK 0022-2836 0070 ? 9126843 10.1006/jmbi.1996.0864 1 'Crystallization and Preliminary Characterization of Crystals of D-2-Hydroxyisocaproate Dehydrogenase from Lactobacillus Casei' J.Mol.Biol. 240 400 ? 1994 JMOBAK UK 0022-2836 0070 ? ? ? 2 ;Roentgenkristallographische Untersuchungen an Drei Mikrobiellen Enzymen: D-2-Hydroxyisocaproat-Dehydrogenase Aus Lactobacillus Casei L-2-Hydroxyisocaproat-Dehydrogenase Aus Lactobacillus Confusus Alkalische Protease Aus Bacillus Alcalophilus/Variante Q59R ; Thesis ? ? ? 1993 ? GW ? 2131 'Braunschweig : Technische Universitat Braunschweig (Thesis)' ? ? 3 'Potential of R-2-Hydroxyisocaproate Dehydrogenase from Lactobacillus Casei for Stereospecific Reductions' ENZYME.MICROB.TECHNOL. 14 28 ? 1992 ? US 0141-0229 ? ? ? ? 4 'Cloning, Sequencing and Expression in Escherichia Coli of the D-2-Hydroxyisocaproate Dehydrogenase Gene of Lactobacillus Casei' Gene 78 47 ? 1989 GENED6 NE 0378-1119 0861 ? ? ? 5 'Crystallization and Molecular Properties of D-2-Hydroxyisocaproate Dehydrogenase from Lactobacillus Casei' 'Fems Microbiol.Lett.' 43 263 ? 1987 FMLED7 NE 0378-1097 2102 ? ? ? 6 ;D-2-Hydroxyisocaproate Dehydrogenase from Lactobacillus Casei. A New Enzyme Suitable for Stereospecific Reduction of 2-Ketocarboxylic Acids ; Appl.Microbiol.Biotechnol. 21 7 ? 1985 AMBIDG GW 0175-7598 0786 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dengler, U.' 1 ? primary 'Niefind, K.' 2 ? primary 'Kiess, M.' 3 ? primary 'Schomburg, D.' 4 ? 1 'Niefind, K.' 5 ? 1 'Hecht, H.J.' 6 ? 1 'Schomburg, D.' 7 ? 2 'Niefind, K.' 8 ? 3 'Kallwass, H.K.W.' 9 ? 4 'Lerch, H.P.' 10 ? 4 'Blocker, H.' 11 ? 4 'Kallwass, H.' 12 ? 4 'Hoppe, J.' 13 ? 4 'Tsai, H.' 14 ? 4 'Collins, J.' 15 ? 5 'Kallwass, H.' 16 ? 5 'Tsai, H.' 17 ? 5 'Schuette, H.' 18 ? 6 'Hummel, W.' 19 ? 6 'Schuette, H.' 20 ? 6 'Kula, M.R.' 21 ? # _cell.entry_id 1DXY _cell.length_a 134.100 _cell.length_b 134.100 _cell.length_c 125.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DXY _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'D-2-HYDROXYISOCAPROATE DEHYDROGENASE' 36929.840 1 1.1.1.- ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn NICOTINAMIDE-ADENINE-DINUCLEOTIDE 663.425 1 ? ? ? ? 4 non-polymer syn '2-OXO-4-METHYLPENTANOIC ACID' 130.142 1 ? ? ? ? 5 water nat water 18.015 182 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'D-HICDH, R-HICDH, R-2-HYDROXYISOCAPROATE DEHYDROGENASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLT KGETSTEVTGPAK ; _entity_poly.pdbx_seq_one_letter_code_can ;MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLT KGETSTEVTGPAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ILE n 1 4 ILE n 1 5 ALA n 1 6 TYR n 1 7 GLY n 1 8 ALA n 1 9 ARG n 1 10 VAL n 1 11 ASP n 1 12 GLU n 1 13 ILE n 1 14 GLN n 1 15 TYR n 1 16 PHE n 1 17 LYS n 1 18 GLN n 1 19 TRP n 1 20 ALA n 1 21 LYS n 1 22 ASP n 1 23 THR n 1 24 GLY n 1 25 ASN n 1 26 THR n 1 27 LEU n 1 28 GLU n 1 29 TYR n 1 30 HIS n 1 31 THR n 1 32 GLU n 1 33 PHE n 1 34 LEU n 1 35 ASP n 1 36 GLU n 1 37 ASN n 1 38 THR n 1 39 VAL n 1 40 GLU n 1 41 TRP n 1 42 ALA n 1 43 LYS n 1 44 GLY n 1 45 PHE n 1 46 ASP n 1 47 GLY n 1 48 ILE n 1 49 ASN n 1 50 SER n 1 51 LEU n 1 52 GLN n 1 53 THR n 1 54 THR n 1 55 PRO n 1 56 TYR n 1 57 ALA n 1 58 ALA n 1 59 GLY n 1 60 VAL n 1 61 PHE n 1 62 GLU n 1 63 LYS n 1 64 MET n 1 65 HIS n 1 66 ALA n 1 67 TYR n 1 68 GLY n 1 69 ILE n 1 70 LYS n 1 71 PHE n 1 72 LEU n 1 73 THR n 1 74 ILE n 1 75 ARG n 1 76 ASN n 1 77 VAL n 1 78 GLY n 1 79 THR n 1 80 ASP n 1 81 ASN n 1 82 ILE n 1 83 ASP n 1 84 MET n 1 85 THR n 1 86 ALA n 1 87 MET n 1 88 LYS n 1 89 GLN n 1 90 TYR n 1 91 GLY n 1 92 ILE n 1 93 ARG n 1 94 LEU n 1 95 SER n 1 96 ASN n 1 97 VAL n 1 98 PRO n 1 99 ALA n 1 100 TYR n 1 101 SER n 1 102 PRO n 1 103 ALA n 1 104 ALA n 1 105 ILE n 1 106 ALA n 1 107 GLU n 1 108 PHE n 1 109 ALA n 1 110 LEU n 1 111 THR n 1 112 ASP n 1 113 THR n 1 114 LEU n 1 115 TYR n 1 116 LEU n 1 117 LEU n 1 118 ARG n 1 119 ASN n 1 120 MET n 1 121 GLY n 1 122 LYS n 1 123 VAL n 1 124 GLN n 1 125 ALA n 1 126 GLN n 1 127 LEU n 1 128 GLN n 1 129 ALA n 1 130 GLY n 1 131 ASP n 1 132 TYR n 1 133 GLU n 1 134 LYS n 1 135 ALA n 1 136 GLY n 1 137 THR n 1 138 PHE n 1 139 ILE n 1 140 GLY n 1 141 LYS n 1 142 GLU n 1 143 LEU n 1 144 GLY n 1 145 GLN n 1 146 GLN n 1 147 THR n 1 148 VAL n 1 149 GLY n 1 150 VAL n 1 151 MET n 1 152 GLY n 1 153 THR n 1 154 GLY n 1 155 HIS n 1 156 ILE n 1 157 GLY n 1 158 GLN n 1 159 VAL n 1 160 ALA n 1 161 ILE n 1 162 LYS n 1 163 LEU n 1 164 PHE n 1 165 LYS n 1 166 GLY n 1 167 PHE n 1 168 GLY n 1 169 ALA n 1 170 LYS n 1 171 VAL n 1 172 ILE n 1 173 ALA n 1 174 TYR n 1 175 ASP n 1 176 PRO n 1 177 TYR n 1 178 PRO n 1 179 MET n 1 180 LYS n 1 181 GLY n 1 182 ASP n 1 183 HIS n 1 184 PRO n 1 185 ASP n 1 186 PHE n 1 187 ASP n 1 188 TYR n 1 189 VAL n 1 190 SER n 1 191 LEU n 1 192 GLU n 1 193 ASP n 1 194 LEU n 1 195 PHE n 1 196 LYS n 1 197 GLN n 1 198 SER n 1 199 ASP n 1 200 VAL n 1 201 ILE n 1 202 ASP n 1 203 LEU n 1 204 HIS n 1 205 VAL n 1 206 PRO n 1 207 GLY n 1 208 ILE n 1 209 GLU n 1 210 GLN n 1 211 ASN n 1 212 THR n 1 213 HIS n 1 214 ILE n 1 215 ILE n 1 216 ASN n 1 217 GLU n 1 218 ALA n 1 219 ALA n 1 220 PHE n 1 221 ASN n 1 222 LEU n 1 223 MET n 1 224 LYS n 1 225 PRO n 1 226 GLY n 1 227 ALA n 1 228 ILE n 1 229 VAL n 1 230 ILE n 1 231 ASN n 1 232 THR n 1 233 ALA n 1 234 ARG n 1 235 PRO n 1 236 ASN n 1 237 LEU n 1 238 ILE n 1 239 ASP n 1 240 THR n 1 241 GLN n 1 242 ALA n 1 243 MET n 1 244 LEU n 1 245 SER n 1 246 ASN n 1 247 LEU n 1 248 LYS n 1 249 SER n 1 250 GLY n 1 251 LYS n 1 252 LEU n 1 253 ALA n 1 254 GLY n 1 255 VAL n 1 256 GLY n 1 257 ILE n 1 258 ASP n 1 259 THR n 1 260 TYR n 1 261 GLU n 1 262 TYR n 1 263 GLU n 1 264 THR n 1 265 GLU n 1 266 ASP n 1 267 LEU n 1 268 LEU n 1 269 ASN n 1 270 LEU n 1 271 ALA n 1 272 LYS n 1 273 HIS n 1 274 GLY n 1 275 SER n 1 276 PHE n 1 277 LYS n 1 278 ASP n 1 279 PRO n 1 280 LEU n 1 281 TRP n 1 282 ASP n 1 283 GLU n 1 284 LEU n 1 285 LEU n 1 286 GLY n 1 287 MET n 1 288 PRO n 1 289 ASN n 1 290 VAL n 1 291 VAL n 1 292 LEU n 1 293 SER n 1 294 PRO n 1 295 HIS n 1 296 ILE n 1 297 ALA n 1 298 TYR n 1 299 TYR n 1 300 THR n 1 301 GLU n 1 302 THR n 1 303 ALA n 1 304 VAL n 1 305 HIS n 1 306 ASN n 1 307 MET n 1 308 VAL n 1 309 TYR n 1 310 PHE n 1 311 SER n 1 312 LEU n 1 313 GLN n 1 314 HIS n 1 315 LEU n 1 316 VAL n 1 317 ASP n 1 318 PHE n 1 319 LEU n 1 320 THR n 1 321 LYS n 1 322 GLY n 1 323 GLU n 1 324 THR n 1 325 SER n 1 326 THR n 1 327 GLU n 1 328 VAL n 1 329 THR n 1 330 GLY n 1 331 PRO n 1 332 ALA n 1 333 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lactobacillus _entity_src_gen.pdbx_gene_src_gene POTENTIAL _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lactobacillus casei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1582 _entity_src_gen.pdbx_gene_src_variant 'SSP. PSEUDOPLANTARUM' _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PJLA601 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DHD2_LACPA _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P17584 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLT KGETSTEVTGPAK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DXY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 333 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P17584 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 333 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 333 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 COI non-polymer . '2-OXO-4-METHYLPENTANOIC ACID' 'alpha-ketoisocaproic acid' 'C6 H10 O3' 130.142 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAD non-polymer . NICOTINAMIDE-ADENINE-DINUCLEOTIDE ? 'C21 H27 N7 O14 P2' 663.425 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DXY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.4 _exptl_crystal.density_percent_sol 72.0 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;1.9 M AMMONIUM SULFATE, 50 MM CITRATE/PHOSPHATE BUFFER, 30 MM NAD+, 60 MM 4-METHYL-2-OXOPENTANOATE, PH 7.0, 277 K; ENZYME CONCENTRATION 10 MG/ML. ; # _diffrn.id 1 _diffrn.ambient_temp 277 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 1994-08-01 _diffrn_detector.details 'MIRROR OPTICS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MPG/DESY, HAMBURG BEAMLINE BW6' _diffrn_source.pdbx_synchrotron_site 'MPG/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW6 _diffrn_source.pdbx_wavelength 1.1 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DXY _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 12.1 _reflns.d_resolution_high 1.86 _reflns.number_obs 53838 _reflns.number_all ? _reflns.percent_possible_obs 96.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0890000 _reflns.pdbx_netI_over_sigmaI 22.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.8 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.86 _reflns_shell.d_res_low 2.0 _reflns_shell.percent_possible_all 86.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.4800000 _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1DXY _refine.ls_number_reflns_obs 53838 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 12.1 _refine.ls_d_res_high 1.86 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_obs 0.1960000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1960000 _refine.ls_R_factor_R_free 0.2170000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 31.02 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'BACKBONE AND C-BETA ATOMS OF D-GLYCERATE DEHYDROGENASE (PDB ENTRY 1GDH)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DXY _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.28 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2580 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 63 _refine_hist.number_atoms_solvent 182 _refine_hist.number_atoms_total 2825 _refine_hist.d_res_high 1.86 _refine_hist.d_res_low 12.1 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.73 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 23.12 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.25 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1DXY _struct.title 'STRUCTURE OF D-2-HYDROXYISOCAPROATE DEHYDROGENASE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DXY _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'D-2-HYDROXYCARBOXYLATE DEHYDROGENASE, D-LACTATE DEHYDROGENASE, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ;D-HICDH IS A DIMER OF IDENTICAL SUBUNITS, WHICH OCCUPIES A SPECIAL POSITION IN THE INVESTIGATED CRYSTALS. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 10 ? THR A 23 ? VAL A 10 THR A 23 5 ? 14 HELX_P HELX_P2 2 THR A 38 ? ALA A 42 ? THR A 38 ALA A 42 5 ? 5 HELX_P HELX_P3 3 ALA A 58 ? TYR A 67 ? ALA A 58 TYR A 67 1 ? 10 HELX_P HELX_P4 4 MET A 84 ? GLN A 89 ? MET A 84 GLN A 89 1 ? 6 HELX_P HELX_P5 5 PRO A 102 ? LEU A 117 ? PRO A 102 LEU A 117 1 ? 16 HELX_P HELX_P6 6 MET A 120 ? GLN A 128 ? MET A 120 GLN A 128 1 ? 9 HELX_P HELX_P7 7 TYR A 132 ? GLY A 136 ? TYR A 132 GLY A 136 1 ? 5 HELX_P HELX_P8 8 LEU A 143 ? GLN A 145 ? LEU A 143 GLN A 145 5 ? 3 HELX_P HELX_P9 9 HIS A 155 ? PHE A 167 ? HIS A 155 PHE A 167 1 ? 13 HELX_P HELX_P10 10 LEU A 191 ? GLN A 197 ? LEU A 191 GLN A 197 1 ? 7 HELX_P HELX_P11 11 GLU A 209 ? ASN A 211 ? GLU A 209 ASN A 211 5 ? 3 HELX_P HELX_P12 12 GLU A 217 ? LEU A 222 ? GLU A 217 LEU A 222 1 ? 6 HELX_P HELX_P13 13 THR A 240 ? LYS A 248 ? THR A 240 LYS A 248 1 ? 9 HELX_P HELX_P14 14 GLU A 263 ? HIS A 273 ? GLU A 263 HIS A 273 1 ? 11 HELX_P HELX_P15 15 PRO A 279 ? LEU A 285 ? PRO A 279 LEU A 285 1 ? 7 HELX_P HELX_P16 16 GLU A 301 ? LYS A 321 ? GLU A 301 LYS A 321 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 26 ? TYR A 29 ? THR A 26 TYR A 29 A 2 LYS A 2 ? ALA A 5 ? LYS A 2 ALA A 5 A 3 GLY A 47 ? SER A 50 ? GLY A 47 SER A 50 A 4 PHE A 71 ? ILE A 74 ? PHE A 71 ILE A 74 A 5 ARG A 93 ? SER A 95 ? ARG A 93 SER A 95 B 1 LYS A 170 ? TYR A 174 ? LYS A 170 TYR A 174 B 2 THR A 147 ? MET A 151 ? THR A 147 MET A 151 B 3 VAL A 200 ? LEU A 203 ? VAL A 200 LEU A 203 B 4 ALA A 227 ? ASN A 231 ? ALA A 227 ASN A 231 B 5 LEU A 252 ? ILE A 257 ? LEU A 252 ILE A 257 B 6 VAL A 290 ? LEU A 292 ? VAL A 290 LEU A 292 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 26 ? O THR A 26 N ILE A 3 ? N ILE A 3 A 2 3 O ILE A 4 ? O ILE A 4 N GLY A 47 ? N GLY A 47 A 3 4 O ILE A 48 ? O ILE A 48 N THR A 73 ? N THR A 73 A 4 5 O LEU A 72 ? O LEU A 72 N ARG A 93 ? N ARG A 93 B 1 2 O LYS A 170 ? O LYS A 170 N VAL A 148 ? N VAL A 148 B 2 3 O GLY A 149 ? O GLY A 149 N VAL A 200 ? N VAL A 200 B 3 4 O ILE A 201 ? O ILE A 201 N ILE A 228 ? N ILE A 228 B 4 5 O ALA A 227 ? O ALA A 227 N ALA A 253 ? N ALA A 253 B 5 6 O VAL A 255 ? O VAL A 255 N VAL A 291 ? N VAL A 291 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CAT Unknown ? ? ? ? 7 'ACTIVE SITE.' AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 338' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 339' AC3 Software ? ? ? ? 26 'BINDING SITE FOR RESIDUE NAD A 336' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE COI A 337' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAT 7 VAL A 77 ? VAL A 77 . ? 1_555 ? 2 CAT 7 GLY A 78 ? GLY A 78 . ? 1_555 ? 3 CAT 7 TYR A 100 ? TYR A 100 . ? 1_555 ? 4 CAT 7 THR A 232 ? THR A 232 . ? 1_555 ? 5 CAT 7 ARG A 234 ? ARG A 234 . ? 1_555 ? 6 CAT 7 GLU A 263 ? GLU A 263 . ? 1_555 ? 7 CAT 7 HIS A 295 ? HIS A 295 . ? 1_555 ? 8 AC1 6 ASN A 76 ? ASN A 76 . ? 1_555 ? 9 AC1 6 VAL A 77 ? VAL A 77 . ? 1_555 ? 10 AC1 6 GLY A 78 ? GLY A 78 . ? 1_555 ? 11 AC1 6 TYR A 100 ? TYR A 100 . ? 1_555 ? 12 AC1 6 ARG A 234 ? ARG A 234 . ? 1_555 ? 13 AC1 6 COI E . ? COI A 404 . ? 1_555 ? 14 AC2 6 PRO A 98 ? PRO A 98 . ? 1_555 ? 15 AC2 6 ALA A 99 ? ALA A 99 . ? 1_555 ? 16 AC2 6 PHE A 310 ? PHE A 310 . ? 1_555 ? 17 AC2 6 HIS A 314 ? HIS A 314 . ? 1_555 ? 18 AC2 6 THR A 326 ? THR A 326 . ? 1_555 ? 19 AC2 6 HOH F . ? HOH A 653 . ? 1_555 ? 20 AC3 26 TYR A 100 ? TYR A 100 . ? 1_555 ? 21 AC3 26 GLY A 152 ? GLY A 152 . ? 1_555 ? 22 AC3 26 GLY A 154 ? GLY A 154 . ? 1_555 ? 23 AC3 26 HIS A 155 ? HIS A 155 . ? 1_555 ? 24 AC3 26 ILE A 156 ? ILE A 156 . ? 1_555 ? 25 AC3 26 TYR A 174 ? TYR A 174 . ? 1_555 ? 26 AC3 26 ASP A 175 ? ASP A 175 . ? 1_555 ? 27 AC3 26 PRO A 176 ? PRO A 176 . ? 1_555 ? 28 AC3 26 HIS A 204 ? HIS A 204 . ? 1_555 ? 29 AC3 26 VAL A 205 ? VAL A 205 . ? 1_555 ? 30 AC3 26 PRO A 206 ? PRO A 206 . ? 1_555 ? 31 AC3 26 ASN A 211 ? ASN A 211 . ? 1_555 ? 32 AC3 26 ILE A 214 ? ILE A 214 . ? 1_555 ? 33 AC3 26 THR A 232 ? THR A 232 . ? 1_555 ? 34 AC3 26 ALA A 233 ? ALA A 233 . ? 1_555 ? 35 AC3 26 ARG A 234 ? ARG A 234 . ? 1_555 ? 36 AC3 26 ASP A 258 ? ASP A 258 . ? 1_555 ? 37 AC3 26 THR A 259 ? THR A 259 . ? 1_555 ? 38 AC3 26 HIS A 295 ? HIS A 295 . ? 1_555 ? 39 AC3 26 TYR A 298 ? TYR A 298 . ? 1_555 ? 40 AC3 26 COI E . ? COI A 404 . ? 1_555 ? 41 AC3 26 HOH F . ? HOH A 502 . ? 1_555 ? 42 AC3 26 HOH F . ? HOH A 504 . ? 1_555 ? 43 AC3 26 HOH F . ? HOH A 580 . ? 1_555 ? 44 AC3 26 HOH F . ? HOH A 581 . ? 1_555 ? 45 AC3 26 HOH F . ? HOH A 629 . ? 1_555 ? 46 AC4 7 VAL A 77 ? VAL A 77 . ? 1_555 ? 47 AC4 7 TYR A 100 ? TYR A 100 . ? 1_555 ? 48 AC4 7 ARG A 234 ? ARG A 234 . ? 1_555 ? 49 AC4 7 HIS A 295 ? HIS A 295 . ? 1_555 ? 50 AC4 7 MET A 307 ? MET A 307 . ? 1_555 ? 51 AC4 7 NAD D . ? NAD A 403 . ? 1_555 ? 52 AC4 7 SO4 B . ? SO4 A 401 . ? 1_555 ? # _database_PDB_matrix.entry_id 1DXY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DXY _atom_sites.fract_transf_matrix[1][1] 0.007457 _atom_sites.fract_transf_matrix[1][2] 0.004305 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008611 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007994 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 TRP 19 19 19 TRP TRP A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 MET 64 64 64 MET MET A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 MET 84 84 84 MET MET A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 MET 87 87 87 MET MET A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 MET 120 120 120 MET MET A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 GLN 126 126 126 GLN GLN A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 GLN 145 145 145 GLN GLN A . n A 1 146 GLN 146 146 146 GLN GLN A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 MET 151 151 151 MET MET A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 THR 153 153 153 THR THR A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 HIS 155 155 155 HIS HIS A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 PHE 167 167 167 PHE PHE A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 LYS 170 170 170 LYS LYS A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 TYR 174 174 174 TYR TYR A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 PRO 176 176 176 PRO PRO A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 MET 179 179 179 MET MET A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 GLY 181 181 181 GLY GLY A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 HIS 183 183 183 HIS HIS A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 ASP 185 185 185 ASP ASP A . n A 1 186 PHE 186 186 186 PHE PHE A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 TYR 188 188 188 TYR TYR A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ASP 193 193 193 ASP ASP A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 PHE 195 195 195 PHE PHE A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 GLN 197 197 197 GLN GLN A . n A 1 198 SER 198 198 198 SER SER A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 ASP 202 202 202 ASP ASP A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 HIS 204 204 204 HIS HIS A . n A 1 205 VAL 205 205 205 VAL VAL A . n A 1 206 PRO 206 206 206 PRO PRO A . n A 1 207 GLY 207 207 207 GLY GLY A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 GLN 210 210 210 GLN GLN A . n A 1 211 ASN 211 211 211 ASN ASN A . n A 1 212 THR 212 212 212 THR THR A . n A 1 213 HIS 213 213 213 HIS HIS A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 ILE 215 215 215 ILE ILE A . n A 1 216 ASN 216 216 216 ASN ASN A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 PHE 220 220 220 PHE PHE A . n A 1 221 ASN 221 221 221 ASN ASN A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 MET 223 223 223 MET MET A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 PRO 225 225 225 PRO PRO A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 ILE 228 228 228 ILE ILE A . n A 1 229 VAL 229 229 229 VAL VAL A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 THR 232 232 232 THR THR A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 ARG 234 234 234 ARG ARG A . n A 1 235 PRO 235 235 235 PRO PRO A . n A 1 236 ASN 236 236 236 ASN ASN A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 ILE 238 238 238 ILE ILE A . n A 1 239 ASP 239 239 239 ASP ASP A . n A 1 240 THR 240 240 240 THR THR A . n A 1 241 GLN 241 241 241 GLN GLN A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 MET 243 243 243 MET MET A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 SER 245 245 245 SER SER A . n A 1 246 ASN 246 246 246 ASN ASN A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 LYS 248 248 248 LYS LYS A . n A 1 249 SER 249 249 249 SER SER A . n A 1 250 GLY 250 250 250 GLY GLY A . n A 1 251 LYS 251 251 251 LYS LYS A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 ALA 253 253 253 ALA ALA A . n A 1 254 GLY 254 254 254 GLY GLY A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 GLY 256 256 256 GLY GLY A . n A 1 257 ILE 257 257 257 ILE ILE A . n A 1 258 ASP 258 258 258 ASP ASP A . n A 1 259 THR 259 259 259 THR THR A . n A 1 260 TYR 260 260 260 TYR TYR A . n A 1 261 GLU 261 261 261 GLU GLU A . n A 1 262 TYR 262 262 262 TYR TYR A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 THR 264 264 264 THR THR A . n A 1 265 GLU 265 265 265 GLU GLU A . n A 1 266 ASP 266 266 266 ASP ASP A . n A 1 267 LEU 267 267 267 LEU LEU A . n A 1 268 LEU 268 268 268 LEU LEU A . n A 1 269 ASN 269 269 269 ASN ASN A . n A 1 270 LEU 270 270 270 LEU LEU A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 LYS 272 272 272 LYS LYS A . n A 1 273 HIS 273 273 273 HIS HIS A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 SER 275 275 275 SER SER A . n A 1 276 PHE 276 276 276 PHE PHE A . n A 1 277 LYS 277 277 277 LYS LYS A . n A 1 278 ASP 278 278 278 ASP ASP A . n A 1 279 PRO 279 279 279 PRO PRO A . n A 1 280 LEU 280 280 280 LEU LEU A . n A 1 281 TRP 281 281 281 TRP TRP A . n A 1 282 ASP 282 282 282 ASP ASP A . n A 1 283 GLU 283 283 283 GLU GLU A . n A 1 284 LEU 284 284 284 LEU LEU A . n A 1 285 LEU 285 285 285 LEU LEU A . n A 1 286 GLY 286 286 286 GLY GLY A . n A 1 287 MET 287 287 287 MET MET A . n A 1 288 PRO 288 288 288 PRO PRO A . n A 1 289 ASN 289 289 289 ASN ASN A . n A 1 290 VAL 290 290 290 VAL VAL A . n A 1 291 VAL 291 291 291 VAL VAL A . n A 1 292 LEU 292 292 292 LEU LEU A . n A 1 293 SER 293 293 293 SER SER A . n A 1 294 PRO 294 294 294 PRO PRO A . n A 1 295 HIS 295 295 295 HIS HIS A . n A 1 296 ILE 296 296 296 ILE ILE A . n A 1 297 ALA 297 297 297 ALA ALA A . n A 1 298 TYR 298 298 298 TYR TYR A . n A 1 299 TYR 299 299 299 TYR TYR A . n A 1 300 THR 300 300 300 THR THR A . n A 1 301 GLU 301 301 301 GLU GLU A . n A 1 302 THR 302 302 302 THR THR A . n A 1 303 ALA 303 303 303 ALA ALA A . n A 1 304 VAL 304 304 304 VAL VAL A . n A 1 305 HIS 305 305 305 HIS HIS A . n A 1 306 ASN 306 306 306 ASN ASN A . n A 1 307 MET 307 307 307 MET MET A . n A 1 308 VAL 308 308 308 VAL VAL A . n A 1 309 TYR 309 309 309 TYR TYR A . n A 1 310 PHE 310 310 310 PHE PHE A . n A 1 311 SER 311 311 311 SER SER A . n A 1 312 LEU 312 312 312 LEU LEU A . n A 1 313 GLN 313 313 313 GLN GLN A . n A 1 314 HIS 314 314 314 HIS HIS A . n A 1 315 LEU 315 315 315 LEU LEU A . n A 1 316 VAL 316 316 316 VAL VAL A . n A 1 317 ASP 317 317 317 ASP ASP A . n A 1 318 PHE 318 318 318 PHE PHE A . n A 1 319 LEU 319 319 319 LEU LEU A . n A 1 320 THR 320 320 320 THR THR A . n A 1 321 LYS 321 321 321 LYS LYS A . n A 1 322 GLY 322 322 322 GLY GLY A . n A 1 323 GLU 323 323 323 GLU GLU A . n A 1 324 THR 324 324 324 THR THR A . n A 1 325 SER 325 325 325 SER SER A . n A 1 326 THR 326 326 326 THR THR A . n A 1 327 GLU 327 327 327 GLU GLU A . n A 1 328 VAL 328 328 328 VAL VAL A . n A 1 329 THR 329 329 329 THR THR A . n A 1 330 GLY 330 330 330 GLY GLY A . n A 1 331 PRO 331 331 ? ? ? A . n A 1 332 ALA 332 332 ? ? ? A . n A 1 333 LYS 333 333 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 401 338 SO4 SO4 A . C 2 SO4 1 402 339 SO4 SO4 A . D 3 NAD 1 403 336 NAD NAD A . E 4 COI 1 404 337 COI COI A . F 5 HOH 1 501 340 HOH HOH A . F 5 HOH 2 502 341 HOH HOH A . F 5 HOH 3 503 342 HOH HOH A . F 5 HOH 4 504 343 HOH HOH A . F 5 HOH 5 505 344 HOH HOH A . F 5 HOH 6 506 345 HOH HOH A . F 5 HOH 7 507 346 HOH HOH A . F 5 HOH 8 508 347 HOH HOH A . F 5 HOH 9 509 348 HOH HOH A . F 5 HOH 10 510 349 HOH HOH A . F 5 HOH 11 511 350 HOH HOH A . F 5 HOH 12 512 351 HOH HOH A . F 5 HOH 13 513 352 HOH HOH A . F 5 HOH 14 514 353 HOH HOH A . F 5 HOH 15 515 354 HOH HOH A . F 5 HOH 16 516 355 HOH HOH A . F 5 HOH 17 517 356 HOH HOH A . F 5 HOH 18 518 357 HOH HOH A . F 5 HOH 19 519 358 HOH HOH A . F 5 HOH 20 520 359 HOH HOH A . F 5 HOH 21 521 360 HOH HOH A . F 5 HOH 22 522 361 HOH HOH A . F 5 HOH 23 523 362 HOH HOH A . F 5 HOH 24 524 363 HOH HOH A . F 5 HOH 25 525 364 HOH HOH A . F 5 HOH 26 526 365 HOH HOH A . F 5 HOH 27 527 366 HOH HOH A . F 5 HOH 28 528 367 HOH HOH A . F 5 HOH 29 529 368 HOH HOH A . F 5 HOH 30 530 369 HOH HOH A . F 5 HOH 31 531 370 HOH HOH A . F 5 HOH 32 532 371 HOH HOH A . F 5 HOH 33 533 372 HOH HOH A . F 5 HOH 34 534 373 HOH HOH A . F 5 HOH 35 535 374 HOH HOH A . F 5 HOH 36 536 375 HOH HOH A . F 5 HOH 37 537 376 HOH HOH A . F 5 HOH 38 538 377 HOH HOH A . F 5 HOH 39 539 378 HOH HOH A . F 5 HOH 40 540 379 HOH HOH A . F 5 HOH 41 541 380 HOH HOH A . F 5 HOH 42 542 381 HOH HOH A . F 5 HOH 43 543 382 HOH HOH A . F 5 HOH 44 544 383 HOH HOH A . F 5 HOH 45 545 384 HOH HOH A . F 5 HOH 46 546 385 HOH HOH A . F 5 HOH 47 547 386 HOH HOH A . F 5 HOH 48 548 387 HOH HOH A . F 5 HOH 49 549 388 HOH HOH A . F 5 HOH 50 550 389 HOH HOH A . F 5 HOH 51 551 390 HOH HOH A . F 5 HOH 52 552 391 HOH HOH A . F 5 HOH 53 553 392 HOH HOH A . F 5 HOH 54 554 393 HOH HOH A . F 5 HOH 55 555 394 HOH HOH A . F 5 HOH 56 556 395 HOH HOH A . F 5 HOH 57 557 396 HOH HOH A . F 5 HOH 58 558 397 HOH HOH A . F 5 HOH 59 559 398 HOH HOH A . F 5 HOH 60 560 399 HOH HOH A . F 5 HOH 61 561 400 HOH HOH A . F 5 HOH 62 562 401 HOH HOH A . F 5 HOH 63 563 402 HOH HOH A . F 5 HOH 64 564 403 HOH HOH A . F 5 HOH 65 565 404 HOH HOH A . F 5 HOH 66 566 405 HOH HOH A . F 5 HOH 67 567 406 HOH HOH A . F 5 HOH 68 568 407 HOH HOH A . F 5 HOH 69 569 408 HOH HOH A . F 5 HOH 70 570 409 HOH HOH A . F 5 HOH 71 571 410 HOH HOH A . F 5 HOH 72 572 411 HOH HOH A . F 5 HOH 73 573 412 HOH HOH A . F 5 HOH 74 574 413 HOH HOH A . F 5 HOH 75 575 414 HOH HOH A . F 5 HOH 76 576 415 HOH HOH A . F 5 HOH 77 577 416 HOH HOH A . F 5 HOH 78 578 417 HOH HOH A . F 5 HOH 79 579 418 HOH HOH A . F 5 HOH 80 580 419 HOH HOH A . F 5 HOH 81 581 420 HOH HOH A . F 5 HOH 82 582 421 HOH HOH A . F 5 HOH 83 583 422 HOH HOH A . F 5 HOH 84 584 423 HOH HOH A . F 5 HOH 85 585 424 HOH HOH A . F 5 HOH 86 586 425 HOH HOH A . F 5 HOH 87 587 426 HOH HOH A . F 5 HOH 88 588 427 HOH HOH A . F 5 HOH 89 589 428 HOH HOH A . F 5 HOH 90 590 429 HOH HOH A . F 5 HOH 91 591 430 HOH HOH A . F 5 HOH 92 592 431 HOH HOH A . F 5 HOH 93 593 432 HOH HOH A . F 5 HOH 94 594 433 HOH HOH A . F 5 HOH 95 595 434 HOH HOH A . F 5 HOH 96 596 435 HOH HOH A . F 5 HOH 97 597 436 HOH HOH A . F 5 HOH 98 598 437 HOH HOH A . F 5 HOH 99 599 438 HOH HOH A . F 5 HOH 100 600 439 HOH HOH A . F 5 HOH 101 601 440 HOH HOH A . F 5 HOH 102 602 441 HOH HOH A . F 5 HOH 103 603 442 HOH HOH A . F 5 HOH 104 604 443 HOH HOH A . F 5 HOH 105 605 444 HOH HOH A . F 5 HOH 106 606 445 HOH HOH A . F 5 HOH 107 607 446 HOH HOH A . F 5 HOH 108 608 447 HOH HOH A . F 5 HOH 109 609 448 HOH HOH A . F 5 HOH 110 610 449 HOH HOH A . F 5 HOH 111 611 450 HOH HOH A . F 5 HOH 112 612 451 HOH HOH A . F 5 HOH 113 613 452 HOH HOH A . F 5 HOH 114 614 453 HOH HOH A . F 5 HOH 115 615 454 HOH HOH A . F 5 HOH 116 616 455 HOH HOH A . F 5 HOH 117 617 456 HOH HOH A . F 5 HOH 118 618 457 HOH HOH A . F 5 HOH 119 619 458 HOH HOH A . F 5 HOH 120 620 459 HOH HOH A . F 5 HOH 121 621 460 HOH HOH A . F 5 HOH 122 622 461 HOH HOH A . F 5 HOH 123 623 462 HOH HOH A . F 5 HOH 124 624 463 HOH HOH A . F 5 HOH 125 625 464 HOH HOH A . F 5 HOH 126 626 465 HOH HOH A . F 5 HOH 127 627 466 HOH HOH A . F 5 HOH 128 628 467 HOH HOH A . F 5 HOH 129 629 468 HOH HOH A . F 5 HOH 130 630 469 HOH HOH A . F 5 HOH 131 631 470 HOH HOH A . F 5 HOH 132 632 471 HOH HOH A . F 5 HOH 133 633 472 HOH HOH A . F 5 HOH 134 634 473 HOH HOH A . F 5 HOH 135 635 474 HOH HOH A . F 5 HOH 136 636 475 HOH HOH A . F 5 HOH 137 637 476 HOH HOH A . F 5 HOH 138 638 477 HOH HOH A . F 5 HOH 139 639 478 HOH HOH A . F 5 HOH 140 640 479 HOH HOH A . F 5 HOH 141 641 480 HOH HOH A . F 5 HOH 142 642 481 HOH HOH A . F 5 HOH 143 643 482 HOH HOH A . F 5 HOH 144 644 483 HOH HOH A . F 5 HOH 145 645 484 HOH HOH A . F 5 HOH 146 646 485 HOH HOH A . F 5 HOH 147 647 486 HOH HOH A . F 5 HOH 148 648 487 HOH HOH A . F 5 HOH 149 649 488 HOH HOH A . F 5 HOH 150 650 489 HOH HOH A . F 5 HOH 151 651 490 HOH HOH A . F 5 HOH 152 652 491 HOH HOH A . F 5 HOH 153 653 492 HOH HOH A . F 5 HOH 154 654 493 HOH HOH A . F 5 HOH 155 655 494 HOH HOH A . F 5 HOH 156 656 495 HOH HOH A . F 5 HOH 157 657 496 HOH HOH A . F 5 HOH 158 658 497 HOH HOH A . F 5 HOH 159 659 498 HOH HOH A . F 5 HOH 160 660 499 HOH HOH A . F 5 HOH 161 661 500 HOH HOH A . F 5 HOH 162 662 501 HOH HOH A . F 5 HOH 163 663 502 HOH HOH A . F 5 HOH 164 664 503 HOH HOH A . F 5 HOH 165 665 504 HOH HOH A . F 5 HOH 166 666 505 HOH HOH A . F 5 HOH 167 667 506 HOH HOH A . F 5 HOH 168 668 507 HOH HOH A . F 5 HOH 169 669 508 HOH HOH A . F 5 HOH 170 670 509 HOH HOH A . F 5 HOH 171 671 510 HOH HOH A . F 5 HOH 172 672 511 HOH HOH A . F 5 HOH 173 673 512 HOH HOH A . F 5 HOH 174 674 513 HOH HOH A . F 5 HOH 175 675 514 HOH HOH A . F 5 HOH 176 676 515 HOH HOH A . F 5 HOH 177 677 516 HOH HOH A . F 5 HOH 178 678 517 HOH HOH A . F 5 HOH 179 679 518 HOH HOH A . F 5 HOH 180 680 519 HOH HOH A . F 5 HOH 181 681 520 HOH HOH A . F 5 HOH 182 682 521 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA,PQS hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F 2 1,3,4,5,6,2 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8770 ? 1 MORE -103 ? 1 'SSA (A^2)' 26670 ? 2 'ABSA (A^2)' 34670 ? 2 MORE -342 ? 2 'SSA (A^2)' 71660 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/2 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -62.5500000000 3 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 134.1000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 67.0500000000 -0.8660254038 -0.5000000000 0.0000000000 116.1340066475 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/2 0.5000000000 -0.8660254038 0.0000000000 67.0500000000 -0.8660254038 -0.5000000000 0.0000000000 116.1340066475 0.0000000000 0.0000000000 -1.0000000000 -62.5500000000 6 'crystal symmetry operation' 11_654 -x+y+1,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 134.1000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -62.5500000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 543 ? F HOH . 2 1 A HOH 545 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-06-16 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2017-03-15 6 'Structure model' 1 5 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Database references' 7 6 'Structure model' Other 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' database_2 2 6 'Structure model' pdbx_database_status 3 6 'Structure model' pdbx_initial_refinement_model 4 6 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_pdbx_database_status.process_site' 4 6 'Structure model' '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(AGROVATA' ? 4 ROTAVATA 'data scaling' . ? 5 X-PLOR phasing 3.1 ? 6 # _pdbx_entry_details.entry_id 1DXY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;2-OXOISOCAPROATE (OIC 337) AND A SULFATE ION (SO4 338) ARE MUTUALLY EXCLUSIVELY BOUND IN THE ACTIVE SITE. THE OCCUPANCY FACTORS OF BOTH LIGANDS WERE SET TO 0.5, WHILE DIFFERENCES IN OCCUPATION WERE SIMULATED BY TEMPERATURE FACTOR REFINEMENT. ; _pdbx_entry_details.sequence_details ;A CONTACT IS OBSERVED BETWEEN THE SIDE CHAINS OF ASP 266 AND ASP 278. CHEMICAL PROTEIN SEQUENCING CONFIRMED THESE RESIDUES TO BE ASPARTATES. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 76 ? ? -115.43 -166.41 2 1 ALA A 99 ? ? -140.42 59.92 3 1 SER A 101 ? ? -165.13 88.51 4 1 THR A 153 ? ? -109.38 46.33 5 1 HIS A 183 ? ? -163.66 83.59 6 1 HIS A 204 ? ? -141.87 47.73 7 1 ASN A 216 ? ? -124.76 -169.56 8 1 ALA A 233 ? ? -89.63 -83.74 9 1 TYR A 299 ? ? -68.55 72.51 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 2 ? CE ? A LYS 2 CE 2 1 Y 0 A LYS 2 ? NZ ? A LYS 2 NZ 3 1 Y 0 A LYS 21 ? CE ? A LYS 21 CE 4 1 Y 0 A LYS 21 ? NZ ? A LYS 21 NZ 5 1 Y 0 A LYS 43 ? CG ? A LYS 43 CG 6 1 Y 0 A LYS 43 ? CD ? A LYS 43 CD 7 1 Y 0 A LYS 43 ? CE ? A LYS 43 CE 8 1 Y 0 A LYS 43 ? NZ ? A LYS 43 NZ 9 1 Y 0 A LYS 70 ? CG ? A LYS 70 CG 10 1 Y 0 A LYS 70 ? CD ? A LYS 70 CD 11 1 Y 0 A LYS 70 ? CE ? A LYS 70 CE 12 1 Y 0 A LYS 70 ? NZ ? A LYS 70 NZ 13 1 Y 0 A LYS 88 ? CG ? A LYS 88 CG 14 1 Y 0 A LYS 88 ? CD ? A LYS 88 CD 15 1 Y 0 A LYS 88 ? CE ? A LYS 88 CE 16 1 Y 0 A LYS 88 ? NZ ? A LYS 88 NZ 17 1 Y 0 A LYS 180 ? CD ? A LYS 180 CD 18 1 Y 0 A LYS 180 ? CE ? A LYS 180 CE 19 1 Y 0 A LYS 180 ? NZ ? A LYS 180 NZ 20 1 Y 0 A GLU 209 ? CG ? A GLU 209 CG 21 1 Y 0 A GLU 209 ? CD ? A GLU 209 CD 22 1 Y 0 A GLU 209 ? OE1 ? A GLU 209 OE1 23 1 Y 0 A GLU 209 ? OE2 ? A GLU 209 OE2 24 1 Y 0 A LYS 321 ? CD ? A LYS 321 CD 25 1 Y 0 A LYS 321 ? CE ? A LYS 321 CE 26 1 Y 0 A LYS 321 ? NZ ? A LYS 321 NZ 27 1 Y 0 A GLU 323 ? CG ? A GLU 323 CG 28 1 Y 0 A GLU 323 ? CD ? A GLU 323 CD 29 1 Y 0 A GLU 323 ? OE1 ? A GLU 323 OE1 30 1 Y 0 A GLU 323 ? OE2 ? A GLU 323 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 331 ? A PRO 331 2 1 Y 1 A ALA 332 ? A ALA 332 3 1 Y 1 A LYS 333 ? A LYS 333 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 NICOTINAMIDE-ADENINE-DINUCLEOTIDE NAD 4 '2-OXO-4-METHYLPENTANOIC ACID' COI 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GDH _pdbx_initial_refinement_model.details 'BACKBONE AND C-BETA ATOMS OF D-GLYCERATE DEHYDROGENASE (PDB ENTRY 1GDH)' #