data_1DYL # _entry.id 1DYL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DYL pdb_00001dyl 10.2210/pdb1dyl/pdb PDBE EBI-4222 ? ? WWPDB D_1290004222 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-08-18 2 'Structure model' 1 1 2011-05-07 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-08-30 5 'Structure model' 1 4 2018-01-31 6 'Structure model' 1 5 2019-12-18 7 'Structure model' 1 6 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data processing' 7 5 'Structure model' Other 8 6 'Structure model' Other 9 7 'Structure model' 'Data collection' 10 7 'Structure model' 'Database references' 11 7 'Structure model' 'Derived calculations' 12 7 'Structure model' 'Refinement description' 13 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_3d_fitting 2 4 'Structure model' em_sample_support 3 4 'Structure model' em_software 4 5 'Structure model' cell 5 5 'Structure model' em_software 6 6 'Structure model' atom_sites 7 7 'Structure model' chem_comp_atom 8 7 'Structure model' chem_comp_bond 9 7 'Structure model' database_2 10 7 'Structure model' em_3d_fitting_list 11 7 'Structure model' pdbx_entry_details 12 7 'Structure model' pdbx_initial_refinement_model 13 7 'Structure model' pdbx_modification_feature 14 7 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_3d_fitting.target_criteria' 2 4 'Structure model' '_em_sample_support.grid_material' 3 4 'Structure model' '_em_sample_support.grid_mesh_size' 4 4 'Structure model' '_em_software.fitting_id' 5 4 'Structure model' '_em_software.image_processing_id' 6 4 'Structure model' '_em_software.name' 7 5 'Structure model' '_cell.Z_PDB' 8 5 'Structure model' '_cell.length_a' 9 5 'Structure model' '_cell.length_b' 10 5 'Structure model' '_cell.length_c' 11 5 'Structure model' '_em_software.details' 12 5 'Structure model' '_em_software.name' 13 6 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 14 6 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 15 6 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' 16 7 'Structure model' '_database_2.pdbx_DOI' 17 7 'Structure model' '_database_2.pdbx_database_accession' 18 7 'Structure model' '_em_3d_fitting_list.accession_code' 19 7 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 20 7 'Structure model' '_em_3d_fitting_list.source_name' 21 7 'Structure model' '_em_3d_fitting_list.type' 22 7 'Structure model' '_pdbx_entry_details.has_protein_modification' 23 7 'Structure model' '_pdbx_struct_oper_list.name' 24 7 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 25 7 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DYL _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-02-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1VCQ unspecified 'SEMLIKI FOREST VIRUS CAPSID PROTEIN (CRYSTAL FORM II)' PDB 1VCP unspecified 'SEMLIKI FOREST VIRUS CAPSID PROTEIN (CRYSTAL FORM I)' EMDB EMD-1015 'associated EM volume' 'SEMLIKI FOREST VIRUS VOLUME DATA' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mancini, E.J.' 1 'Clarke, M.' 2 'Gowen, B.E.' 3 'Rutten, T.' 4 'Fuller, S.D.' 5 # _citation.id primary _citation.title 'Cryo-Electron Microscopy Reveals the Functional Organization of an Enveloped Virus, Semliki Forest Virus.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 5 _citation.page_first 255 _citation.page_last 266 _citation.year 2000 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10882067 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(00)80421-9' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mancini, E.J.' 1 ? primary 'Clarke, M.' 2 ? primary 'Gowen, B.E.' 3 ? primary 'Rutten, T.' 4 ? primary 'Fuller, S.D.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'NUCLEOCAPSID PROTEIN' _entity.formula_weight 16252.439 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;CIFEVKHEGKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPEGHYNWHHG AVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSVVTWNKDMVTRVTPEGSEEW ; _entity_poly.pdbx_seq_one_letter_code_can ;CIFEVKHEGKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPEGHYNWHHG AVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSVVTWNKDMVTRVTPEGSEEW ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 ILE n 1 3 PHE n 1 4 GLU n 1 5 VAL n 1 6 LYS n 1 7 HIS n 1 8 GLU n 1 9 GLY n 1 10 LYS n 1 11 VAL n 1 12 THR n 1 13 GLY n 1 14 TYR n 1 15 ALA n 1 16 CYS n 1 17 LEU n 1 18 VAL n 1 19 GLY n 1 20 ASP n 1 21 LYS n 1 22 VAL n 1 23 MET n 1 24 LYS n 1 25 PRO n 1 26 ALA n 1 27 HIS n 1 28 VAL n 1 29 LYS n 1 30 GLY n 1 31 VAL n 1 32 ILE n 1 33 ASP n 1 34 ASN n 1 35 ALA n 1 36 ASP n 1 37 LEU n 1 38 ALA n 1 39 LYS n 1 40 LEU n 1 41 ALA n 1 42 PHE n 1 43 LYS n 1 44 LYS n 1 45 SER n 1 46 SER n 1 47 LYS n 1 48 TYR n 1 49 ASP n 1 50 LEU n 1 51 GLU n 1 52 CYS n 1 53 ALA n 1 54 GLN n 1 55 ILE n 1 56 PRO n 1 57 VAL n 1 58 HIS n 1 59 MET n 1 60 ARG n 1 61 SER n 1 62 ASP n 1 63 ALA n 1 64 SER n 1 65 LYS n 1 66 TYR n 1 67 THR n 1 68 HIS n 1 69 GLU n 1 70 LYS n 1 71 PRO n 1 72 GLU n 1 73 GLY n 1 74 HIS n 1 75 TYR n 1 76 ASN n 1 77 TRP n 1 78 HIS n 1 79 HIS n 1 80 GLY n 1 81 ALA n 1 82 VAL n 1 83 GLN n 1 84 TYR n 1 85 SER n 1 86 GLY n 1 87 GLY n 1 88 ARG n 1 89 PHE n 1 90 THR n 1 91 ILE n 1 92 PRO n 1 93 THR n 1 94 GLY n 1 95 ALA n 1 96 GLY n 1 97 LYS n 1 98 PRO n 1 99 GLY n 1 100 ASP n 1 101 SER n 1 102 GLY n 1 103 ARG n 1 104 PRO n 1 105 ILE n 1 106 PHE n 1 107 ASP n 1 108 ASN n 1 109 LYS n 1 110 GLY n 1 111 ARG n 1 112 VAL n 1 113 VAL n 1 114 ALA n 1 115 ILE n 1 116 VAL n 1 117 LEU n 1 118 GLY n 1 119 GLY n 1 120 ALA n 1 121 ASN n 1 122 GLU n 1 123 GLY n 1 124 SER n 1 125 ARG n 1 126 THR n 1 127 ALA n 1 128 LEU n 1 129 SER n 1 130 VAL n 1 131 VAL n 1 132 THR n 1 133 TRP n 1 134 ASN n 1 135 LYS n 1 136 ASP n 1 137 MET n 1 138 VAL n 1 139 THR n 1 140 ARG n 1 141 VAL n 1 142 THR n 1 143 PRO n 1 144 GLU n 1 145 GLY n 1 146 SER n 1 147 GLU n 1 148 GLU n 1 149 TRP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name SFV _entity_src_nat.pdbx_organism_scientific 'SEMLIKI FOREST VIRUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 11033 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line 'BABY HAMSTER KIDNEY 21' _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location EXTRACELLULAR _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 119 119 CYS CYS A . n A 1 2 ILE 2 120 120 ILE ILE A . n A 1 3 PHE 3 121 121 PHE PHE A . n A 1 4 GLU 4 122 122 GLU GLU A . n A 1 5 VAL 5 123 123 VAL VAL A . n A 1 6 LYS 6 124 124 LYS LYS A . n A 1 7 HIS 7 125 125 HIS HIS A . n A 1 8 GLU 8 126 126 GLU GLU A . n A 1 9 GLY 9 127 127 GLY GLY A . n A 1 10 LYS 10 128 128 LYS LYS A . n A 1 11 VAL 11 129 129 VAL VAL A . n A 1 12 THR 12 130 130 THR THR A . n A 1 13 GLY 13 131 131 GLY GLY A . n A 1 14 TYR 14 132 132 TYR TYR A . n A 1 15 ALA 15 133 133 ALA ALA A . n A 1 16 CYS 16 134 134 CYS CYS A . n A 1 17 LEU 17 135 135 LEU LEU A . n A 1 18 VAL 18 136 136 VAL VAL A . n A 1 19 GLY 19 137 137 GLY GLY A . n A 1 20 ASP 20 138 138 ASP ASP A . n A 1 21 LYS 21 139 139 LYS LYS A . n A 1 22 VAL 22 140 140 VAL VAL A . n A 1 23 MET 23 141 141 MET MET A . n A 1 24 LYS 24 142 142 LYS LYS A . n A 1 25 PRO 25 143 143 PRO PRO A . n A 1 26 ALA 26 144 144 ALA ALA A . n A 1 27 HIS 27 145 145 HIS HIS A . n A 1 28 VAL 28 146 146 VAL VAL A . n A 1 29 LYS 29 147 147 LYS LYS A . n A 1 30 GLY 30 148 148 GLY GLY A . n A 1 31 VAL 31 149 149 VAL VAL A . n A 1 32 ILE 32 150 150 ILE ILE A . n A 1 33 ASP 33 151 151 ASP ASP A . n A 1 34 ASN 34 152 152 ASN ASN A . n A 1 35 ALA 35 153 153 ALA ALA A . n A 1 36 ASP 36 154 154 ASP ASP A . n A 1 37 LEU 37 155 155 LEU LEU A . n A 1 38 ALA 38 156 156 ALA ALA A . n A 1 39 LYS 39 157 157 LYS LYS A . n A 1 40 LEU 40 158 158 LEU LEU A . n A 1 41 ALA 41 159 159 ALA ALA A . n A 1 42 PHE 42 160 160 PHE PHE A . n A 1 43 LYS 43 161 161 LYS LYS A . n A 1 44 LYS 44 162 162 LYS LYS A . n A 1 45 SER 45 163 163 SER SER A . n A 1 46 SER 46 164 164 SER SER A . n A 1 47 LYS 47 165 165 LYS LYS A . n A 1 48 TYR 48 166 166 TYR TYR A . n A 1 49 ASP 49 167 167 ASP ASP A . n A 1 50 LEU 50 168 168 LEU LEU A . n A 1 51 GLU 51 169 169 GLU GLU A . n A 1 52 CYS 52 170 170 CYS CYS A . n A 1 53 ALA 53 171 171 ALA ALA A . n A 1 54 GLN 54 172 172 GLN GLN A . n A 1 55 ILE 55 173 173 ILE ILE A . n A 1 56 PRO 56 174 174 PRO PRO A . n A 1 57 VAL 57 175 175 VAL VAL A . n A 1 58 HIS 58 176 176 HIS HIS A . n A 1 59 MET 59 177 177 MET MET A . n A 1 60 ARG 60 178 178 ARG ARG A . n A 1 61 SER 61 179 179 SER SER A . n A 1 62 ASP 62 180 180 ASP ASP A . n A 1 63 ALA 63 181 181 ALA ALA A . n A 1 64 SER 64 182 182 SER SER A . n A 1 65 LYS 65 183 183 LYS LYS A . n A 1 66 TYR 66 184 184 TYR TYR A . n A 1 67 THR 67 185 185 THR THR A . n A 1 68 HIS 68 186 186 HIS HIS A . n A 1 69 GLU 69 187 187 GLU GLU A . n A 1 70 LYS 70 188 188 LYS LYS A . n A 1 71 PRO 71 189 189 PRO PRO A . n A 1 72 GLU 72 190 190 GLU GLU A . n A 1 73 GLY 73 191 191 GLY GLY A . n A 1 74 HIS 74 192 192 HIS HIS A . n A 1 75 TYR 75 193 193 TYR TYR A . n A 1 76 ASN 76 194 194 ASN ASN A . n A 1 77 TRP 77 195 195 TRP TRP A . n A 1 78 HIS 78 196 196 HIS HIS A . n A 1 79 HIS 79 197 197 HIS HIS A . n A 1 80 GLY 80 198 198 GLY GLY A . n A 1 81 ALA 81 199 199 ALA ALA A . n A 1 82 VAL 82 200 200 VAL VAL A . n A 1 83 GLN 83 201 201 GLN GLN A . n A 1 84 TYR 84 202 202 TYR TYR A . n A 1 85 SER 85 203 203 SER SER A . n A 1 86 GLY 86 204 204 GLY GLY A . n A 1 87 GLY 87 205 205 GLY GLY A . n A 1 88 ARG 88 206 206 ARG ARG A . n A 1 89 PHE 89 207 207 PHE PHE A . n A 1 90 THR 90 208 208 THR THR A . n A 1 91 ILE 91 209 209 ILE ILE A . n A 1 92 PRO 92 210 210 PRO PRO A . n A 1 93 THR 93 211 211 THR THR A . n A 1 94 GLY 94 212 212 GLY GLY A . n A 1 95 ALA 95 213 213 ALA ALA A . n A 1 96 GLY 96 214 214 GLY GLY A . n A 1 97 LYS 97 215 215 LYS LYS A . n A 1 98 PRO 98 216 216 PRO PRO A . n A 1 99 GLY 99 217 217 GLY GLY A . n A 1 100 ASP 100 218 218 ASP ASP A . n A 1 101 SER 101 219 219 SER SER A . n A 1 102 GLY 102 220 220 GLY GLY A . n A 1 103 ARG 103 221 221 ARG ARG A . n A 1 104 PRO 104 222 222 PRO PRO A . n A 1 105 ILE 105 223 223 ILE ILE A . n A 1 106 PHE 106 224 224 PHE PHE A . n A 1 107 ASP 107 225 225 ASP ASP A . n A 1 108 ASN 108 226 226 ASN ASN A . n A 1 109 LYS 109 227 227 LYS LYS A . n A 1 110 GLY 110 228 228 GLY GLY A . n A 1 111 ARG 111 229 229 ARG ARG A . n A 1 112 VAL 112 230 230 VAL VAL A . n A 1 113 VAL 113 231 231 VAL VAL A . n A 1 114 ALA 114 232 232 ALA ALA A . n A 1 115 ILE 115 233 233 ILE ILE A . n A 1 116 VAL 116 234 234 VAL VAL A . n A 1 117 LEU 117 235 235 LEU LEU A . n A 1 118 GLY 118 236 236 GLY GLY A . n A 1 119 GLY 119 237 237 GLY GLY A . n A 1 120 ALA 120 238 238 ALA ALA A . n A 1 121 ASN 121 239 239 ASN ASN A . n A 1 122 GLU 122 240 240 GLU GLU A . n A 1 123 GLY 123 241 241 GLY GLY A . n A 1 124 SER 124 242 242 SER SER A . n A 1 125 ARG 125 243 243 ARG ARG A . n A 1 126 THR 126 244 244 THR THR A . n A 1 127 ALA 127 245 245 ALA ALA A . n A 1 128 LEU 128 246 246 LEU LEU A . n A 1 129 SER 129 247 247 SER SER A . n A 1 130 VAL 130 248 248 VAL VAL A . n A 1 131 VAL 131 249 249 VAL VAL A . n A 1 132 THR 132 250 250 THR THR A . n A 1 133 TRP 133 251 251 TRP TRP A . n A 1 134 ASN 134 252 252 ASN ASN A . n A 1 135 LYS 135 253 253 LYS LYS A . n A 1 136 ASP 136 254 254 ASP ASP A . n A 1 137 MET 137 255 255 MET MET A . n A 1 138 VAL 138 256 256 VAL VAL A . n A 1 139 THR 139 257 257 THR THR A . n A 1 140 ARG 140 258 258 ARG ARG A . n A 1 141 VAL 141 259 259 VAL VAL A . n A 1 142 THR 142 260 260 THR THR A . n A 1 143 PRO 143 261 261 PRO PRO A . n A 1 144 GLU 144 262 262 GLU GLU A . n A 1 145 GLY 145 263 263 GLY GLY A . n A 1 146 SER 146 264 264 SER SER A . n A 1 147 GLU 147 265 265 GLU GLU A . n A 1 148 GLU 148 266 266 GLU GLU A . n A 1 149 TRP 149 267 267 TRP TRP A . n B 1 1 CYS 1 119 119 CYS CYS B . n B 1 2 ILE 2 120 120 ILE ILE B . n B 1 3 PHE 3 121 121 PHE PHE B . n B 1 4 GLU 4 122 122 GLU GLU B . n B 1 5 VAL 5 123 123 VAL VAL B . n B 1 6 LYS 6 124 124 LYS LYS B . n B 1 7 HIS 7 125 125 HIS HIS B . n B 1 8 GLU 8 126 126 GLU GLU B . n B 1 9 GLY 9 127 127 GLY GLY B . n B 1 10 LYS 10 128 128 LYS LYS B . n B 1 11 VAL 11 129 129 VAL VAL B . n B 1 12 THR 12 130 130 THR THR B . n B 1 13 GLY 13 131 131 GLY GLY B . n B 1 14 TYR 14 132 132 TYR TYR B . n B 1 15 ALA 15 133 133 ALA ALA B . n B 1 16 CYS 16 134 134 CYS CYS B . n B 1 17 LEU 17 135 135 LEU LEU B . n B 1 18 VAL 18 136 136 VAL VAL B . n B 1 19 GLY 19 137 137 GLY GLY B . n B 1 20 ASP 20 138 138 ASP ASP B . n B 1 21 LYS 21 139 139 LYS LYS B . n B 1 22 VAL 22 140 140 VAL VAL B . n B 1 23 MET 23 141 141 MET MET B . n B 1 24 LYS 24 142 142 LYS LYS B . n B 1 25 PRO 25 143 143 PRO PRO B . n B 1 26 ALA 26 144 144 ALA ALA B . n B 1 27 HIS 27 145 145 HIS HIS B . n B 1 28 VAL 28 146 146 VAL VAL B . n B 1 29 LYS 29 147 147 LYS LYS B . n B 1 30 GLY 30 148 148 GLY GLY B . n B 1 31 VAL 31 149 149 VAL VAL B . n B 1 32 ILE 32 150 150 ILE ILE B . n B 1 33 ASP 33 151 151 ASP ASP B . n B 1 34 ASN 34 152 152 ASN ASN B . n B 1 35 ALA 35 153 153 ALA ALA B . n B 1 36 ASP 36 154 154 ASP ASP B . n B 1 37 LEU 37 155 155 LEU LEU B . n B 1 38 ALA 38 156 156 ALA ALA B . n B 1 39 LYS 39 157 157 LYS LYS B . n B 1 40 LEU 40 158 158 LEU LEU B . n B 1 41 ALA 41 159 159 ALA ALA B . n B 1 42 PHE 42 160 160 PHE PHE B . n B 1 43 LYS 43 161 161 LYS LYS B . n B 1 44 LYS 44 162 162 LYS LYS B . n B 1 45 SER 45 163 163 SER SER B . n B 1 46 SER 46 164 164 SER SER B . n B 1 47 LYS 47 165 165 LYS LYS B . n B 1 48 TYR 48 166 166 TYR TYR B . n B 1 49 ASP 49 167 167 ASP ASP B . n B 1 50 LEU 50 168 168 LEU LEU B . n B 1 51 GLU 51 169 169 GLU GLU B . n B 1 52 CYS 52 170 170 CYS CYS B . n B 1 53 ALA 53 171 171 ALA ALA B . n B 1 54 GLN 54 172 172 GLN GLN B . n B 1 55 ILE 55 173 173 ILE ILE B . n B 1 56 PRO 56 174 174 PRO PRO B . n B 1 57 VAL 57 175 175 VAL VAL B . n B 1 58 HIS 58 176 176 HIS HIS B . n B 1 59 MET 59 177 177 MET MET B . n B 1 60 ARG 60 178 178 ARG ARG B . n B 1 61 SER 61 179 179 SER SER B . n B 1 62 ASP 62 180 180 ASP ASP B . n B 1 63 ALA 63 181 181 ALA ALA B . n B 1 64 SER 64 182 182 SER SER B . n B 1 65 LYS 65 183 183 LYS LYS B . n B 1 66 TYR 66 184 184 TYR TYR B . n B 1 67 THR 67 185 185 THR THR B . n B 1 68 HIS 68 186 186 HIS HIS B . n B 1 69 GLU 69 187 187 GLU GLU B . n B 1 70 LYS 70 188 188 LYS LYS B . n B 1 71 PRO 71 189 189 PRO PRO B . n B 1 72 GLU 72 190 190 GLU GLU B . n B 1 73 GLY 73 191 191 GLY GLY B . n B 1 74 HIS 74 192 192 HIS HIS B . n B 1 75 TYR 75 193 193 TYR TYR B . n B 1 76 ASN 76 194 194 ASN ASN B . n B 1 77 TRP 77 195 195 TRP TRP B . n B 1 78 HIS 78 196 196 HIS HIS B . n B 1 79 HIS 79 197 197 HIS HIS B . n B 1 80 GLY 80 198 198 GLY GLY B . n B 1 81 ALA 81 199 199 ALA ALA B . n B 1 82 VAL 82 200 200 VAL VAL B . n B 1 83 GLN 83 201 201 GLN GLN B . n B 1 84 TYR 84 202 202 TYR TYR B . n B 1 85 SER 85 203 203 SER SER B . n B 1 86 GLY 86 204 204 GLY GLY B . n B 1 87 GLY 87 205 205 GLY GLY B . n B 1 88 ARG 88 206 206 ARG ARG B . n B 1 89 PHE 89 207 207 PHE PHE B . n B 1 90 THR 90 208 208 THR THR B . n B 1 91 ILE 91 209 209 ILE ILE B . n B 1 92 PRO 92 210 210 PRO PRO B . n B 1 93 THR 93 211 211 THR THR B . n B 1 94 GLY 94 212 212 GLY GLY B . n B 1 95 ALA 95 213 213 ALA ALA B . n B 1 96 GLY 96 214 214 GLY GLY B . n B 1 97 LYS 97 215 215 LYS LYS B . n B 1 98 PRO 98 216 216 PRO PRO B . n B 1 99 GLY 99 217 217 GLY GLY B . n B 1 100 ASP 100 218 218 ASP ASP B . n B 1 101 SER 101 219 219 SER SER B . n B 1 102 GLY 102 220 220 GLY GLY B . n B 1 103 ARG 103 221 221 ARG ARG B . n B 1 104 PRO 104 222 222 PRO PRO B . n B 1 105 ILE 105 223 223 ILE ILE B . n B 1 106 PHE 106 224 224 PHE PHE B . n B 1 107 ASP 107 225 225 ASP ASP B . n B 1 108 ASN 108 226 226 ASN ASN B . n B 1 109 LYS 109 227 227 LYS LYS B . n B 1 110 GLY 110 228 228 GLY GLY B . n B 1 111 ARG 111 229 229 ARG ARG B . n B 1 112 VAL 112 230 230 VAL VAL B . n B 1 113 VAL 113 231 231 VAL VAL B . n B 1 114 ALA 114 232 232 ALA ALA B . n B 1 115 ILE 115 233 233 ILE ILE B . n B 1 116 VAL 116 234 234 VAL VAL B . n B 1 117 LEU 117 235 235 LEU LEU B . n B 1 118 GLY 118 236 236 GLY GLY B . n B 1 119 GLY 119 237 237 GLY GLY B . n B 1 120 ALA 120 238 238 ALA ALA B . n B 1 121 ASN 121 239 239 ASN ASN B . n B 1 122 GLU 122 240 240 GLU GLU B . n B 1 123 GLY 123 241 241 GLY GLY B . n B 1 124 SER 124 242 242 SER SER B . n B 1 125 ARG 125 243 243 ARG ARG B . n B 1 126 THR 126 244 244 THR THR B . n B 1 127 ALA 127 245 245 ALA ALA B . n B 1 128 LEU 128 246 246 LEU LEU B . n B 1 129 SER 129 247 247 SER SER B . n B 1 130 VAL 130 248 248 VAL VAL B . n B 1 131 VAL 131 249 249 VAL VAL B . n B 1 132 THR 132 250 250 THR THR B . n B 1 133 TRP 133 251 251 TRP TRP B . n B 1 134 ASN 134 252 252 ASN ASN B . n B 1 135 LYS 135 253 253 LYS LYS B . n B 1 136 ASP 136 254 254 ASP ASP B . n B 1 137 MET 137 255 255 MET MET B . n B 1 138 VAL 138 256 256 VAL VAL B . n B 1 139 THR 139 257 257 THR THR B . n B 1 140 ARG 140 258 258 ARG ARG B . n B 1 141 VAL 141 259 259 VAL VAL B . n B 1 142 THR 142 260 260 THR THR B . n B 1 143 PRO 143 261 261 PRO PRO B . n B 1 144 GLU 144 262 262 GLU GLU B . n B 1 145 GLY 145 263 263 GLY GLY B . n B 1 146 SER 146 264 264 SER SER B . n B 1 147 GLU 147 265 265 GLU GLU B . n B 1 148 GLU 148 266 266 GLU GLU B . n B 1 149 TRP 149 267 267 TRP TRP B . n C 1 1 CYS 1 119 119 CYS CYS C . n C 1 2 ILE 2 120 120 ILE ILE C . n C 1 3 PHE 3 121 121 PHE PHE C . n C 1 4 GLU 4 122 122 GLU GLU C . n C 1 5 VAL 5 123 123 VAL VAL C . n C 1 6 LYS 6 124 124 LYS LYS C . n C 1 7 HIS 7 125 125 HIS HIS C . n C 1 8 GLU 8 126 126 GLU GLU C . n C 1 9 GLY 9 127 127 GLY GLY C . n C 1 10 LYS 10 128 128 LYS LYS C . n C 1 11 VAL 11 129 129 VAL VAL C . n C 1 12 THR 12 130 130 THR THR C . n C 1 13 GLY 13 131 131 GLY GLY C . n C 1 14 TYR 14 132 132 TYR TYR C . n C 1 15 ALA 15 133 133 ALA ALA C . n C 1 16 CYS 16 134 134 CYS CYS C . n C 1 17 LEU 17 135 135 LEU LEU C . n C 1 18 VAL 18 136 136 VAL VAL C . n C 1 19 GLY 19 137 137 GLY GLY C . n C 1 20 ASP 20 138 138 ASP ASP C . n C 1 21 LYS 21 139 139 LYS LYS C . n C 1 22 VAL 22 140 140 VAL VAL C . n C 1 23 MET 23 141 141 MET MET C . n C 1 24 LYS 24 142 142 LYS LYS C . n C 1 25 PRO 25 143 143 PRO PRO C . n C 1 26 ALA 26 144 144 ALA ALA C . n C 1 27 HIS 27 145 145 HIS HIS C . n C 1 28 VAL 28 146 146 VAL VAL C . n C 1 29 LYS 29 147 147 LYS LYS C . n C 1 30 GLY 30 148 148 GLY GLY C . n C 1 31 VAL 31 149 149 VAL VAL C . n C 1 32 ILE 32 150 150 ILE ILE C . n C 1 33 ASP 33 151 151 ASP ASP C . n C 1 34 ASN 34 152 152 ASN ASN C . n C 1 35 ALA 35 153 153 ALA ALA C . n C 1 36 ASP 36 154 154 ASP ASP C . n C 1 37 LEU 37 155 155 LEU LEU C . n C 1 38 ALA 38 156 156 ALA ALA C . n C 1 39 LYS 39 157 157 LYS LYS C . n C 1 40 LEU 40 158 158 LEU LEU C . n C 1 41 ALA 41 159 159 ALA ALA C . n C 1 42 PHE 42 160 160 PHE PHE C . n C 1 43 LYS 43 161 161 LYS LYS C . n C 1 44 LYS 44 162 162 LYS LYS C . n C 1 45 SER 45 163 163 SER SER C . n C 1 46 SER 46 164 164 SER SER C . n C 1 47 LYS 47 165 165 LYS LYS C . n C 1 48 TYR 48 166 166 TYR TYR C . n C 1 49 ASP 49 167 167 ASP ASP C . n C 1 50 LEU 50 168 168 LEU LEU C . n C 1 51 GLU 51 169 169 GLU GLU C . n C 1 52 CYS 52 170 170 CYS CYS C . n C 1 53 ALA 53 171 171 ALA ALA C . n C 1 54 GLN 54 172 172 GLN GLN C . n C 1 55 ILE 55 173 173 ILE ILE C . n C 1 56 PRO 56 174 174 PRO PRO C . n C 1 57 VAL 57 175 175 VAL VAL C . n C 1 58 HIS 58 176 176 HIS HIS C . n C 1 59 MET 59 177 177 MET MET C . n C 1 60 ARG 60 178 178 ARG ARG C . n C 1 61 SER 61 179 179 SER SER C . n C 1 62 ASP 62 180 180 ASP ASP C . n C 1 63 ALA 63 181 181 ALA ALA C . n C 1 64 SER 64 182 182 SER SER C . n C 1 65 LYS 65 183 183 LYS LYS C . n C 1 66 TYR 66 184 184 TYR TYR C . n C 1 67 THR 67 185 185 THR THR C . n C 1 68 HIS 68 186 186 HIS HIS C . n C 1 69 GLU 69 187 187 GLU GLU C . n C 1 70 LYS 70 188 188 LYS LYS C . n C 1 71 PRO 71 189 189 PRO PRO C . n C 1 72 GLU 72 190 190 GLU GLU C . n C 1 73 GLY 73 191 191 GLY GLY C . n C 1 74 HIS 74 192 192 HIS HIS C . n C 1 75 TYR 75 193 193 TYR TYR C . n C 1 76 ASN 76 194 194 ASN ASN C . n C 1 77 TRP 77 195 195 TRP TRP C . n C 1 78 HIS 78 196 196 HIS HIS C . n C 1 79 HIS 79 197 197 HIS HIS C . n C 1 80 GLY 80 198 198 GLY GLY C . n C 1 81 ALA 81 199 199 ALA ALA C . n C 1 82 VAL 82 200 200 VAL VAL C . n C 1 83 GLN 83 201 201 GLN GLN C . n C 1 84 TYR 84 202 202 TYR TYR C . n C 1 85 SER 85 203 203 SER SER C . n C 1 86 GLY 86 204 204 GLY GLY C . n C 1 87 GLY 87 205 205 GLY GLY C . n C 1 88 ARG 88 206 206 ARG ARG C . n C 1 89 PHE 89 207 207 PHE PHE C . n C 1 90 THR 90 208 208 THR THR C . n C 1 91 ILE 91 209 209 ILE ILE C . n C 1 92 PRO 92 210 210 PRO PRO C . n C 1 93 THR 93 211 211 THR THR C . n C 1 94 GLY 94 212 212 GLY GLY C . n C 1 95 ALA 95 213 213 ALA ALA C . n C 1 96 GLY 96 214 214 GLY GLY C . n C 1 97 LYS 97 215 215 LYS LYS C . n C 1 98 PRO 98 216 216 PRO PRO C . n C 1 99 GLY 99 217 217 GLY GLY C . n C 1 100 ASP 100 218 218 ASP ASP C . n C 1 101 SER 101 219 219 SER SER C . n C 1 102 GLY 102 220 220 GLY GLY C . n C 1 103 ARG 103 221 221 ARG ARG C . n C 1 104 PRO 104 222 222 PRO PRO C . n C 1 105 ILE 105 223 223 ILE ILE C . n C 1 106 PHE 106 224 224 PHE PHE C . n C 1 107 ASP 107 225 225 ASP ASP C . n C 1 108 ASN 108 226 226 ASN ASN C . n C 1 109 LYS 109 227 227 LYS LYS C . n C 1 110 GLY 110 228 228 GLY GLY C . n C 1 111 ARG 111 229 229 ARG ARG C . n C 1 112 VAL 112 230 230 VAL VAL C . n C 1 113 VAL 113 231 231 VAL VAL C . n C 1 114 ALA 114 232 232 ALA ALA C . n C 1 115 ILE 115 233 233 ILE ILE C . n C 1 116 VAL 116 234 234 VAL VAL C . n C 1 117 LEU 117 235 235 LEU LEU C . n C 1 118 GLY 118 236 236 GLY GLY C . n C 1 119 GLY 119 237 237 GLY GLY C . n C 1 120 ALA 120 238 238 ALA ALA C . n C 1 121 ASN 121 239 239 ASN ASN C . n C 1 122 GLU 122 240 240 GLU GLU C . n C 1 123 GLY 123 241 241 GLY GLY C . n C 1 124 SER 124 242 242 SER SER C . n C 1 125 ARG 125 243 243 ARG ARG C . n C 1 126 THR 126 244 244 THR THR C . n C 1 127 ALA 127 245 245 ALA ALA C . n C 1 128 LEU 128 246 246 LEU LEU C . n C 1 129 SER 129 247 247 SER SER C . n C 1 130 VAL 130 248 248 VAL VAL C . n C 1 131 VAL 131 249 249 VAL VAL C . n C 1 132 THR 132 250 250 THR THR C . n C 1 133 TRP 133 251 251 TRP TRP C . n C 1 134 ASN 134 252 252 ASN ASN C . n C 1 135 LYS 135 253 253 LYS LYS C . n C 1 136 ASP 136 254 254 ASP ASP C . n C 1 137 MET 137 255 255 MET MET C . n C 1 138 VAL 138 256 256 VAL VAL C . n C 1 139 THR 139 257 257 THR THR C . n C 1 140 ARG 140 258 258 ARG ARG C . n C 1 141 VAL 141 259 259 VAL VAL C . n C 1 142 THR 142 260 260 THR THR C . n C 1 143 PRO 143 261 261 PRO PRO C . n C 1 144 GLU 144 262 262 GLU GLU C . n C 1 145 GLY 145 263 263 GLY GLY C . n C 1 146 SER 146 264 264 SER SER C . n C 1 147 GLU 147 265 265 GLU GLU C . n C 1 148 GLU 148 266 266 GLU GLU C . n C 1 149 TRP 149 267 267 TRP TRP C . n D 1 1 CYS 1 119 119 CYS CYS D . n D 1 2 ILE 2 120 120 ILE ILE D . n D 1 3 PHE 3 121 121 PHE PHE D . n D 1 4 GLU 4 122 122 GLU GLU D . n D 1 5 VAL 5 123 123 VAL VAL D . n D 1 6 LYS 6 124 124 LYS LYS D . n D 1 7 HIS 7 125 125 HIS HIS D . n D 1 8 GLU 8 126 126 GLU GLU D . n D 1 9 GLY 9 127 127 GLY GLY D . n D 1 10 LYS 10 128 128 LYS LYS D . n D 1 11 VAL 11 129 129 VAL VAL D . n D 1 12 THR 12 130 130 THR THR D . n D 1 13 GLY 13 131 131 GLY GLY D . n D 1 14 TYR 14 132 132 TYR TYR D . n D 1 15 ALA 15 133 133 ALA ALA D . n D 1 16 CYS 16 134 134 CYS CYS D . n D 1 17 LEU 17 135 135 LEU LEU D . n D 1 18 VAL 18 136 136 VAL VAL D . n D 1 19 GLY 19 137 137 GLY GLY D . n D 1 20 ASP 20 138 138 ASP ASP D . n D 1 21 LYS 21 139 139 LYS LYS D . n D 1 22 VAL 22 140 140 VAL VAL D . n D 1 23 MET 23 141 141 MET MET D . n D 1 24 LYS 24 142 142 LYS LYS D . n D 1 25 PRO 25 143 143 PRO PRO D . n D 1 26 ALA 26 144 144 ALA ALA D . n D 1 27 HIS 27 145 145 HIS HIS D . n D 1 28 VAL 28 146 146 VAL VAL D . n D 1 29 LYS 29 147 147 LYS LYS D . n D 1 30 GLY 30 148 148 GLY GLY D . n D 1 31 VAL 31 149 149 VAL VAL D . n D 1 32 ILE 32 150 150 ILE ILE D . n D 1 33 ASP 33 151 151 ASP ASP D . n D 1 34 ASN 34 152 152 ASN ASN D . n D 1 35 ALA 35 153 153 ALA ALA D . n D 1 36 ASP 36 154 154 ASP ASP D . n D 1 37 LEU 37 155 155 LEU LEU D . n D 1 38 ALA 38 156 156 ALA ALA D . n D 1 39 LYS 39 157 157 LYS LYS D . n D 1 40 LEU 40 158 158 LEU LEU D . n D 1 41 ALA 41 159 159 ALA ALA D . n D 1 42 PHE 42 160 160 PHE PHE D . n D 1 43 LYS 43 161 161 LYS LYS D . n D 1 44 LYS 44 162 162 LYS LYS D . n D 1 45 SER 45 163 163 SER SER D . n D 1 46 SER 46 164 164 SER SER D . n D 1 47 LYS 47 165 165 LYS LYS D . n D 1 48 TYR 48 166 166 TYR TYR D . n D 1 49 ASP 49 167 167 ASP ASP D . n D 1 50 LEU 50 168 168 LEU LEU D . n D 1 51 GLU 51 169 169 GLU GLU D . n D 1 52 CYS 52 170 170 CYS CYS D . n D 1 53 ALA 53 171 171 ALA ALA D . n D 1 54 GLN 54 172 172 GLN GLN D . n D 1 55 ILE 55 173 173 ILE ILE D . n D 1 56 PRO 56 174 174 PRO PRO D . n D 1 57 VAL 57 175 175 VAL VAL D . n D 1 58 HIS 58 176 176 HIS HIS D . n D 1 59 MET 59 177 177 MET MET D . n D 1 60 ARG 60 178 178 ARG ARG D . n D 1 61 SER 61 179 179 SER SER D . n D 1 62 ASP 62 180 180 ASP ASP D . n D 1 63 ALA 63 181 181 ALA ALA D . n D 1 64 SER 64 182 182 SER SER D . n D 1 65 LYS 65 183 183 LYS LYS D . n D 1 66 TYR 66 184 184 TYR TYR D . n D 1 67 THR 67 185 185 THR THR D . n D 1 68 HIS 68 186 186 HIS HIS D . n D 1 69 GLU 69 187 187 GLU GLU D . n D 1 70 LYS 70 188 188 LYS LYS D . n D 1 71 PRO 71 189 189 PRO PRO D . n D 1 72 GLU 72 190 190 GLU GLU D . n D 1 73 GLY 73 191 191 GLY GLY D . n D 1 74 HIS 74 192 192 HIS HIS D . n D 1 75 TYR 75 193 193 TYR TYR D . n D 1 76 ASN 76 194 194 ASN ASN D . n D 1 77 TRP 77 195 195 TRP TRP D . n D 1 78 HIS 78 196 196 HIS HIS D . n D 1 79 HIS 79 197 197 HIS HIS D . n D 1 80 GLY 80 198 198 GLY GLY D . n D 1 81 ALA 81 199 199 ALA ALA D . n D 1 82 VAL 82 200 200 VAL VAL D . n D 1 83 GLN 83 201 201 GLN GLN D . n D 1 84 TYR 84 202 202 TYR TYR D . n D 1 85 SER 85 203 203 SER SER D . n D 1 86 GLY 86 204 204 GLY GLY D . n D 1 87 GLY 87 205 205 GLY GLY D . n D 1 88 ARG 88 206 206 ARG ARG D . n D 1 89 PHE 89 207 207 PHE PHE D . n D 1 90 THR 90 208 208 THR THR D . n D 1 91 ILE 91 209 209 ILE ILE D . n D 1 92 PRO 92 210 210 PRO PRO D . n D 1 93 THR 93 211 211 THR THR D . n D 1 94 GLY 94 212 212 GLY GLY D . n D 1 95 ALA 95 213 213 ALA ALA D . n D 1 96 GLY 96 214 214 GLY GLY D . n D 1 97 LYS 97 215 215 LYS LYS D . n D 1 98 PRO 98 216 216 PRO PRO D . n D 1 99 GLY 99 217 217 GLY GLY D . n D 1 100 ASP 100 218 218 ASP ASP D . n D 1 101 SER 101 219 219 SER SER D . n D 1 102 GLY 102 220 220 GLY GLY D . n D 1 103 ARG 103 221 221 ARG ARG D . n D 1 104 PRO 104 222 222 PRO PRO D . n D 1 105 ILE 105 223 223 ILE ILE D . n D 1 106 PHE 106 224 224 PHE PHE D . n D 1 107 ASP 107 225 225 ASP ASP D . n D 1 108 ASN 108 226 226 ASN ASN D . n D 1 109 LYS 109 227 227 LYS LYS D . n D 1 110 GLY 110 228 228 GLY GLY D . n D 1 111 ARG 111 229 229 ARG ARG D . n D 1 112 VAL 112 230 230 VAL VAL D . n D 1 113 VAL 113 231 231 VAL VAL D . n D 1 114 ALA 114 232 232 ALA ALA D . n D 1 115 ILE 115 233 233 ILE ILE D . n D 1 116 VAL 116 234 234 VAL VAL D . n D 1 117 LEU 117 235 235 LEU LEU D . n D 1 118 GLY 118 236 236 GLY GLY D . n D 1 119 GLY 119 237 237 GLY GLY D . n D 1 120 ALA 120 238 238 ALA ALA D . n D 1 121 ASN 121 239 239 ASN ASN D . n D 1 122 GLU 122 240 240 GLU GLU D . n D 1 123 GLY 123 241 241 GLY GLY D . n D 1 124 SER 124 242 242 SER SER D . n D 1 125 ARG 125 243 243 ARG ARG D . n D 1 126 THR 126 244 244 THR THR D . n D 1 127 ALA 127 245 245 ALA ALA D . n D 1 128 LEU 128 246 246 LEU LEU D . n D 1 129 SER 129 247 247 SER SER D . n D 1 130 VAL 130 248 248 VAL VAL D . n D 1 131 VAL 131 249 249 VAL VAL D . n D 1 132 THR 132 250 250 THR THR D . n D 1 133 TRP 133 251 251 TRP TRP D . n D 1 134 ASN 134 252 252 ASN ASN D . n D 1 135 LYS 135 253 253 LYS LYS D . n D 1 136 ASP 136 254 254 ASP ASP D . n D 1 137 MET 137 255 255 MET MET D . n D 1 138 VAL 138 256 256 VAL VAL D . n D 1 139 THR 139 257 257 THR THR D . n D 1 140 ARG 140 258 258 ARG ARG D . n D 1 141 VAL 141 259 259 VAL VAL D . n D 1 142 THR 142 260 260 THR THR D . n D 1 143 PRO 143 261 261 PRO PRO D . n D 1 144 GLU 144 262 262 GLU GLU D . n D 1 145 GLY 145 263 263 GLY GLY D . n D 1 146 SER 146 264 264 SER SER D . n D 1 147 GLU 147 265 265 GLU GLU D . n D 1 148 GLU 148 266 266 GLU GLU D . n D 1 149 TRP 149 267 267 TRP TRP D . n # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id D _pdbx_unobs_or_zero_occ_atoms.auth_comp_id TRP _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 267 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CH2 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id D _pdbx_unobs_or_zero_occ_atoms.label_comp_id TRP _pdbx_unobs_or_zero_occ_atoms.label_seq_id 149 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CH2 # _cell.entry_id 1DYL _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DYL _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1DYL _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 1DYL _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 9.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4563 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4563 _refine_hist.d_res_high 9.00 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1DYL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DYL _struct.title ;9 ANGSTROM RESOLUTION CRYO-EM RECONSTRUCTION STRUCTURE OF SEMLIKI FOREST VIRUS (SFV) AND FITTING OF THE CAPSID PROTEIN STRUCTURE IN THE EM DENSITY ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DYL _struct_keywords.pdbx_keywords 'VIRUS/VIRAL PROTEIN' _struct_keywords.text ;VIRUS/VIRAL PROTEIN, ALPHAVIRUS, SFV, CRYO-EM, IMAGE RECONSTRUCTION, ENVELOPED VIRUS, CAPSID PROTEIN, ICOSAHEDRAL VIRUS, VIRUS-VIRAL PROTEIN complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POLS_SFV _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P03315 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DYL A 1 ? 149 ? P03315 119 ? 267 ? 119 267 2 1 1DYL B 1 ? 149 ? P03315 119 ? 267 ? 119 267 3 1 1DYL C 1 ? 149 ? P03315 119 ? 267 ? 119 267 4 1 1DYL D 1 ? 149 ? P03315 119 ? 267 ? 119 267 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 240-MERIC 240 2 'icosahedral asymmetric unit' ? tetrameric 4 3 'icosahedral pentamer' ? eicosameric 20 4 'icosahedral 23 hexamer' ? 24-meric 24 5 'icosahedral asymmetric unit, std point frame' ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C,D 2 1 A,B,C,D 3 '(1-5)' A,B,C,D 4 '(1,2,6,10,23,24)' A,B,C,D 5 P A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 3 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 4 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 5 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 7 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 8 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 9 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 10 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 11 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 12 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 13 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 14 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 15 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 16 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 17 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 18 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 19 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 20 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 21 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 22 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 23 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 24 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 25 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 26 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 27 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 28 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 29 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 30 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 31 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 32 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 33 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 34 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 35 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 36 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 37 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 38 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 39 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 40 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 41 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 42 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 43 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 44 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 45 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 46 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 47 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 48 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 49 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 50 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 51 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 52 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 53 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 54 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 55 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 56 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 57 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 58 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 59 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 60 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 34 ? LYS A 39 ? ASN A 152 LYS A 157 1 ? 6 HELX_P HELX_P2 2 PRO A 56 ? ALA A 63 ? PRO A 174 ALA A 181 5 ? 8 HELX_P HELX_P3 3 ASN B 34 ? LYS B 39 ? ASN B 152 LYS B 157 1 ? 6 HELX_P HELX_P4 4 PRO B 56 ? ALA B 63 ? PRO B 174 ALA B 181 5 ? 8 HELX_P HELX_P5 5 ASN C 34 ? LYS C 39 ? ASN C 152 LYS C 157 1 ? 6 HELX_P HELX_P6 6 PRO C 56 ? ALA C 63 ? PRO C 174 ALA C 181 5 ? 8 HELX_P HELX_P7 7 ASN D 34 ? LYS D 39 ? ASN D 152 LYS D 157 1 ? 6 HELX_P HELX_P8 8 PRO D 56 ? ALA D 63 ? PRO D 174 ALA D 181 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 119 A CYS 134 1_555 ? ? ? ? ? ? ? 1.992 ? ? disulf2 disulf ? ? B CYS 1 SG ? ? ? 1_555 B CYS 16 SG ? ? B CYS 119 B CYS 134 1_555 ? ? ? ? ? ? ? 1.991 ? ? disulf3 disulf ? ? C CYS 1 SG ? ? ? 1_555 C CYS 16 SG ? ? C CYS 119 C CYS 134 1_555 ? ? ? ? ? ? ? 1.991 ? ? disulf4 disulf ? ? D CYS 1 SG ? ? ? 1_555 D CYS 16 SG ? ? D CYS 119 D CYS 134 1_555 ? ? ? ? ? ? ? 1.991 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 1 ? CYS A 16 ? CYS A 119 ? 1_555 CYS A 134 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 1 ? CYS B 16 ? CYS B 119 ? 1_555 CYS B 134 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS C 1 ? CYS C 16 ? CYS C 119 ? 1_555 CYS C 134 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS D 1 ? CYS D 16 ? CYS D 119 ? 1_555 CYS D 134 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 4 ? AC ? 4 ? BA ? 3 ? BB ? 4 ? BC ? 4 ? CA ? 3 ? CB ? 4 ? CC ? 4 ? DA ? 3 ? DB ? 4 ? DC ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BB 3 4 ? anti-parallel BC 1 2 ? anti-parallel BC 2 3 ? anti-parallel BC 3 4 ? anti-parallel CA 1 2 ? anti-parallel CA 2 3 ? anti-parallel CB 1 2 ? anti-parallel CB 2 3 ? anti-parallel CB 3 4 ? anti-parallel CC 1 2 ? anti-parallel CC 2 3 ? anti-parallel CC 3 4 ? anti-parallel DA 1 2 ? anti-parallel DA 2 3 ? anti-parallel DB 1 2 ? anti-parallel DB 2 3 ? anti-parallel DB 3 4 ? anti-parallel DC 1 2 ? anti-parallel DC 2 3 ? anti-parallel DC 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 10 ? ALA A 15 ? LYS A 128 ALA A 133 AA 2 PHE A 3 ? HIS A 7 ? PHE A 121 HIS A 125 AA 3 VAL A 31 ? ILE A 32 ? VAL A 149 ILE A 150 AB 1 LEU A 17 ? VAL A 18 ? LEU A 135 VAL A 136 AB 2 LYS A 21 ? VAL A 22 ? LYS A 139 VAL A 140 AB 3 LEU A 50 ? GLN A 54 ? LEU A 168 GLN A 172 AB 4 LYS A 43 ? SER A 45 ? LYS A 161 SER A 163 AC 1 GLY A 73 ? TRP A 77 ? GLY A 191 TRP A 195 AC 2 GLY A 80 ? TYR A 84 ? GLY A 198 TYR A 202 AC 3 PHE A 89 ? PRO A 92 ? PHE A 207 PRO A 210 AC 4 ARG A 125 ? TRP A 133 ? ARG A 243 TRP A 251 BA 1 LYS B 10 ? ALA B 15 ? LYS B 128 ALA B 133 BA 2 PHE B 3 ? HIS B 7 ? PHE B 121 HIS B 125 BA 3 VAL B 31 ? ILE B 32 ? VAL B 149 ILE B 150 BB 1 LEU B 17 ? VAL B 18 ? LEU B 135 VAL B 136 BB 2 LYS B 21 ? VAL B 22 ? LYS B 139 VAL B 140 BB 3 LEU B 50 ? GLN B 54 ? LEU B 168 GLN B 172 BB 4 LYS B 43 ? SER B 45 ? LYS B 161 SER B 163 BC 1 GLY B 73 ? TRP B 77 ? GLY B 191 TRP B 195 BC 2 GLY B 80 ? TYR B 84 ? GLY B 198 TYR B 202 BC 3 PHE B 89 ? PRO B 92 ? PHE B 207 PRO B 210 BC 4 ARG B 125 ? TRP B 133 ? ARG B 243 TRP B 251 CA 1 LYS C 10 ? ALA C 15 ? LYS C 128 ALA C 133 CA 2 PHE C 3 ? HIS C 7 ? PHE C 121 HIS C 125 CA 3 VAL C 31 ? ILE C 32 ? VAL C 149 ILE C 150 CB 1 LEU C 17 ? VAL C 18 ? LEU C 135 VAL C 136 CB 2 LYS C 21 ? VAL C 22 ? LYS C 139 VAL C 140 CB 3 LEU C 50 ? GLN C 54 ? LEU C 168 GLN C 172 CB 4 LYS C 43 ? SER C 45 ? LYS C 161 SER C 163 CC 1 GLY C 73 ? TRP C 77 ? GLY C 191 TRP C 195 CC 2 GLY C 80 ? TYR C 84 ? GLY C 198 TYR C 202 CC 3 PHE C 89 ? PRO C 92 ? PHE C 207 PRO C 210 CC 4 ARG C 125 ? TRP C 133 ? ARG C 243 TRP C 251 DA 1 LYS D 10 ? ALA D 15 ? LYS D 128 ALA D 133 DA 2 PHE D 3 ? HIS D 7 ? PHE D 121 HIS D 125 DA 3 VAL D 31 ? ILE D 32 ? VAL D 149 ILE D 150 DB 1 LEU D 17 ? VAL D 18 ? LEU D 135 VAL D 136 DB 2 LYS D 21 ? VAL D 22 ? LYS D 139 VAL D 140 DB 3 LEU D 50 ? GLN D 54 ? LEU D 168 GLN D 172 DB 4 LYS D 43 ? SER D 45 ? LYS D 161 SER D 163 DC 1 GLY D 73 ? TRP D 77 ? GLY D 191 TRP D 195 DC 2 GLY D 80 ? TYR D 84 ? GLY D 198 TYR D 202 DC 3 PHE D 89 ? PRO D 92 ? PHE D 207 PRO D 210 DC 4 ARG D 125 ? TRP D 133 ? ARG D 243 TRP D 251 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ALA A 15 ? N ALA A 133 O PHE A 3 ? O PHE A 121 AA 2 3 N LYS A 6 ? N LYS A 124 O VAL A 31 ? O VAL A 149 AB 1 2 N VAL A 18 ? N VAL A 136 O LYS A 21 ? O LYS A 139 AB 2 3 N VAL A 22 ? N VAL A 140 O ALA A 53 ? O ALA A 171 AB 3 4 N CYS A 52 ? N CYS A 170 O LYS A 43 ? O LYS A 161 AC 1 2 N TRP A 77 ? N TRP A 195 O GLY A 80 ? O GLY A 198 AC 2 3 N GLN A 83 ? N GLN A 201 O THR A 90 ? O THR A 208 AC 3 4 N ILE A 91 ? N ILE A 209 O THR A 126 ? O THR A 244 BA 1 2 N ALA B 15 ? N ALA B 133 O PHE B 3 ? O PHE B 121 BA 2 3 N LYS B 6 ? N LYS B 124 O VAL B 31 ? O VAL B 149 BB 1 2 N VAL B 18 ? N VAL B 136 O LYS B 21 ? O LYS B 139 BB 2 3 N VAL B 22 ? N VAL B 140 O ALA B 53 ? O ALA B 171 BB 3 4 N CYS B 52 ? N CYS B 170 O LYS B 43 ? O LYS B 161 BC 1 2 N TRP B 77 ? N TRP B 195 O GLY B 80 ? O GLY B 198 BC 2 3 N GLN B 83 ? N GLN B 201 O THR B 90 ? O THR B 208 BC 3 4 N ILE B 91 ? N ILE B 209 O THR B 126 ? O THR B 244 CA 1 2 N ALA C 15 ? N ALA C 133 O PHE C 3 ? O PHE C 121 CA 2 3 N LYS C 6 ? N LYS C 124 O VAL C 31 ? O VAL C 149 CB 1 2 N VAL C 18 ? N VAL C 136 O LYS C 21 ? O LYS C 139 CB 2 3 N VAL C 22 ? N VAL C 140 O ALA C 53 ? O ALA C 171 CB 3 4 N CYS C 52 ? N CYS C 170 O LYS C 43 ? O LYS C 161 CC 1 2 N TRP C 77 ? N TRP C 195 O GLY C 80 ? O GLY C 198 CC 2 3 N GLN C 83 ? N GLN C 201 O THR C 90 ? O THR C 208 CC 3 4 N ILE C 91 ? N ILE C 209 O THR C 126 ? O THR C 244 DA 1 2 N ALA D 15 ? N ALA D 133 O PHE D 3 ? O PHE D 121 DA 2 3 N LYS D 6 ? N LYS D 124 O VAL D 31 ? O VAL D 149 DB 1 2 N VAL D 18 ? N VAL D 136 O LYS D 21 ? O LYS D 139 DB 2 3 N VAL D 22 ? N VAL D 140 O ALA D 53 ? O ALA D 171 DB 3 4 N CYS D 52 ? N CYS D 170 O LYS D 43 ? O LYS D 161 DC 1 2 N TRP D 77 ? N TRP D 195 O GLY D 80 ? O GLY D 198 DC 2 3 N GLN D 83 ? N GLN D 201 O THR D 90 ? O THR D 208 DC 3 4 N ILE D 91 ? N ILE D 209 O THR D 126 ? O THR D 244 # _pdbx_entry_details.entry_id 1DYL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE STRUCTURE STUDIED IS FOR THE COMPLETE VIRUS. THE FOLLOWING RESIDUES AND CHAINS ARE NOT REPORTED IN THIS ENTRY: MET A 1 TO ASP A 118 SER A 268 TO ARG A 1253 MET B 1 TO ASP B 118 SER B 268 TO ARG B 1253 MET C 1 TO ASP C 118 SER C 268 TO ARG C 1253 MET D 1 TO ASP D 118 SER D 268 TO ARG D 1253 AND CHAINS FOR THE SPIKE GLYCOPROTEINS E3, E2 AND E1 ; _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CG B GLU 126 ? ? CB D LYS 188 ? ? 0.49 2 1 C B PRO 189 ? ? N C GLU 126 ? ? 0.51 3 1 O B HIS 125 ? ? CE1 D TYR 193 ? ? 0.62 4 1 CG2 B VAL 129 ? ? ND2 D ASN 194 ? ? 0.66 5 1 C B VAL 149 ? ? CE D LYS 227 ? ? 0.67 6 1 OE2 B GLU 126 ? ? O D LYS 188 ? ? 0.67 7 1 CB B ASP 151 ? ? O D LYS 227 ? ? 0.68 8 1 CG B LYS 124 ? ? C D ASP 225 ? ? 0.70 9 1 CB B ASP 151 ? ? C D LYS 227 ? ? 0.70 10 1 O B VAL 149 ? ? NZ D LYS 227 ? ? 0.75 11 1 ND1 B HIS 125 ? ? CD D PRO 189 ? ? 0.75 12 1 CG B LYS 128 ? ? N D TYR 193 ? ? 0.82 13 1 O B HIS 125 ? ? CZ D TYR 193 ? ? 0.86 14 1 CE1 B HIS 125 ? ? CD D PRO 189 ? ? 0.90 15 1 OD1 B ASP 151 ? ? N D ARG 229 ? ? 0.91 16 1 N B ILE 150 ? ? CD D LYS 227 ? ? 0.92 17 1 N B LYS 128 ? ? CD1 D TYR 193 ? ? 0.96 18 1 CG2 B VAL 149 ? ? NH2 D ARG 229 ? ? 0.96 19 1 C B GLY 191 ? ? CA C LYS 128 ? ? 0.96 20 1 CZ B TYR 193 ? ? CA C GLY 127 ? ? 0.97 21 1 CE2 B TYR 193 ? ? CA C GLY 127 ? ? 0.97 22 1 CA B GLY 191 ? ? CA C LYS 128 ? ? 0.98 23 1 CA B PRO 189 ? ? N C GLU 126 ? ? 0.99 24 1 CA B ASP 151 ? ? O D LYS 227 ? ? 1.05 25 1 CE1 B HIS 125 ? ? N D PRO 189 ? ? 1.05 26 1 C B GLU 190 ? ? O C HIS 125 ? ? 1.06 27 1 CG2 B VAL 149 ? ? CZ D ARG 229 ? ? 1.06 28 1 CA B ILE 150 ? ? CD D LYS 227 ? ? 1.08 29 1 C B PRO 189 ? ? C C HIS 125 ? ? 1.11 30 1 CG B LYS 124 ? ? O D ASP 225 ? ? 1.11 31 1 CG B GLU 126 ? ? CA D LYS 188 ? ? 1.12 32 1 N B GLY 191 ? ? CB C LYS 128 ? ? 1.15 33 1 N B GLU 190 ? ? C C HIS 125 ? ? 1.17 34 1 CG1 B VAL 129 ? ? CG D ASN 226 ? ? 1.20 35 1 CA B GLU 190 ? ? O C HIS 125 ? ? 1.21 36 1 CA B GLY 191 ? ? CB C LYS 128 ? ? 1.22 37 1 CB B LYS 124 ? ? CB D ASP 225 ? ? 1.22 38 1 OD2 B ASP 151 ? ? CA D GLY 228 ? ? 1.23 39 1 OE2 B GLU 126 ? ? C D LYS 188 ? ? 1.25 40 1 CE1 B HIS 125 ? ? CG D PRO 189 ? ? 1.27 41 1 CB B LYS 124 ? ? CG D ASP 225 ? ? 1.28 42 1 OH B TYR 193 ? ? N C GLY 127 ? ? 1.28 43 1 OE1 B GLU 126 ? ? CG D LYS 188 ? ? 1.29 44 1 NE2 B HIS 125 ? ? CA D PRO 189 ? ? 1.30 45 1 CD2 B TYR 202 ? ? O C GLU 126 ? ? 1.30 46 1 CA B GLY 191 ? ? C C LYS 128 ? ? 1.32 47 1 O B PRO 189 ? ? C C GLU 126 ? ? 1.32 48 1 CB B GLU 122 ? ? O D ASN 226 ? ? 1.32 49 1 ND1 B HIS 125 ? ? CG D PRO 189 ? ? 1.33 50 1 CB B VAL 149 ? ? NH2 D ARG 229 ? ? 1.34 51 1 C B PRO 189 ? ? CA C GLU 126 ? ? 1.34 52 1 NE2 B HIS 125 ? ? CB D PRO 189 ? ? 1.35 53 1 CD B GLU 126 ? ? CB D LYS 188 ? ? 1.36 54 1 O B VAL 149 ? ? CE D LYS 227 ? ? 1.37 55 1 C B VAL 149 ? ? NZ D LYS 227 ? ? 1.37 56 1 CG1 B VAL 129 ? ? OD1 D ASN 226 ? ? 1.38 57 1 N B ASP 151 ? ? CB D LYS 227 ? ? 1.39 58 1 CG B ASP 151 ? ? CA D GLY 228 ? ? 1.41 59 1 CD B GLU 126 ? ? CG D LYS 188 ? ? 1.41 60 1 CD B LYS 124 ? ? O D ASP 225 ? ? 1.45 61 1 C B HIS 125 ? ? CE1 D TYR 193 ? ? 1.46 62 1 N B TYR 202 ? ? CD C LYS 128 ? ? 1.46 63 1 CG B LYS 124 ? ? CA D ASP 225 ? ? 1.47 64 1 N B GLU 190 ? ? O C HIS 125 ? ? 1.47 65 1 O B GLY 191 ? ? CG C LYS 128 ? ? 1.48 66 1 NE2 B HIS 125 ? ? CG D PRO 189 ? ? 1.48 67 1 CB B VAL 129 ? ? OD1 D ASN 226 ? ? 1.49 68 1 CB B LYS 124 ? ? OD1 D ASP 225 ? ? 1.49 69 1 CA B VAL 129 ? ? OD1 D ASN 226 ? ? 1.49 70 1 O B PRO 189 ? ? N C GLY 127 ? ? 1.51 71 1 CA B LYS 128 ? ? CA D TYR 193 ? ? 1.52 72 1 O B GLY 191 ? ? CD C LYS 128 ? ? 1.52 73 1 N B LYS 128 ? ? CG D TYR 193 ? ? 1.52 74 1 CA B GLU 122 ? ? O D ASN 226 ? ? 1.52 75 1 CE1 B HIS 125 ? ? CA D PRO 189 ? ? 1.52 76 1 CB B LYS 128 ? ? CG D TYR 193 ? ? 1.52 77 1 O B GLY 127 ? ? O D PHE 224 ? ? 1.53 78 1 NE2 B HIS 125 ? ? C D PRO 189 ? ? 1.54 79 1 OH B TYR 193 ? ? CA C GLY 127 ? ? 1.54 80 1 N B ILE 150 ? ? CE D LYS 227 ? ? 1.54 81 1 C B GLU 122 ? ? O D ASN 226 ? ? 1.54 82 1 O B PRO 189 ? ? N C GLU 126 ? ? 1.56 83 1 O B PRO 189 ? ? CA C GLU 126 ? ? 1.57 84 1 CB B ASP 151 ? ? N D GLY 228 ? ? 1.57 85 1 O B GLU 190 ? ? O C HIS 125 ? ? 1.57 86 1 CE1 B HIS 125 ? ? CB D PRO 189 ? ? 1.59 87 1 C B VAL 149 ? ? CD D LYS 227 ? ? 1.59 88 1 N B GLU 190 ? ? N C GLU 126 ? ? 1.59 89 1 CA B ILE 150 ? ? CG D LYS 227 ? ? 1.59 90 1 O B GLU 122 ? ? CA D LYS 227 ? ? 1.60 91 1 OD1 B ASP 151 ? ? C D GLY 228 ? ? 1.61 92 1 CB B LYS 124 ? ? CA D ASP 225 ? ? 1.63 93 1 CG B HIS 125 ? ? CG D PRO 189 ? ? 1.63 94 1 C B VAL 129 ? ? OD1 D ASN 226 ? ? 1.63 95 1 CE2 B TYR 193 ? ? C C GLY 127 ? ? 1.63 96 1 CB B GLU 126 ? ? CB D LYS 188 ? ? 1.64 97 1 CA B VAL 149 ? ? CE D LYS 227 ? ? 1.64 98 1 N B GLY 127 ? ? CG2 D VAL 231 ? ? 1.64 99 1 CG2 B VAL 149 ? ? NH1 D ARG 229 ? ? 1.64 100 1 CG2 B VAL 129 ? ? CG D ASN 194 ? ? 1.68 101 1 CD B GLU 126 ? ? O D LYS 188 ? ? 1.68 102 1 CG1 B VAL 129 ? ? ND2 D ASN 226 ? ? 1.69 103 1 C B GLY 191 ? ? CB C LYS 128 ? ? 1.69 104 1 CA B LYS 128 ? ? CB D TYR 193 ? ? 1.69 105 1 CE B LYS 124 ? ? O D ASP 225 ? ? 1.70 106 1 NZ B LYS 128 ? ? C D TYR 193 ? ? 1.70 107 1 CD2 B HIS 125 ? ? CG D PRO 189 ? ? 1.70 108 1 CB B LYS 128 ? ? N D TYR 193 ? ? 1.70 109 1 CG B GLU 122 ? ? O D ASN 226 ? ? 1.72 110 1 CA B GLN 201 ? ? CE C LYS 128 ? ? 1.73 111 1 CA B LYS 128 ? ? CG D TYR 193 ? ? 1.73 112 1 O B HIS 125 ? ? OH D TYR 193 ? ? 1.73 113 1 CG B LYS 128 ? ? CA D TYR 193 ? ? 1.74 114 1 CA B LYS 124 ? ? CB D ASP 225 ? ? 1.74 115 1 CG B ASP 151 ? ? C D GLY 228 ? ? 1.75 116 1 O B PRO 189 ? ? C C HIS 125 ? ? 1.78 117 1 CG B LYS 128 ? ? C D HIS 192 ? ? 1.80 118 1 C B PRO 189 ? ? O C HIS 125 ? ? 1.81 119 1 C B HIS 125 ? ? OH D TYR 193 ? ? 1.81 120 1 CB B LYS 128 ? ? CA D TYR 193 ? ? 1.82 121 1 CD B GLU 126 ? ? CA D LYS 188 ? ? 1.82 122 1 N B HIS 192 ? ? CA C LYS 128 ? ? 1.82 123 1 OE1 B GLU 126 ? ? CD D LYS 188 ? ? 1.83 124 1 N B GLY 191 ? ? CA C LYS 128 ? ? 1.83 125 1 CB B LYS 124 ? ? C D ASP 225 ? ? 1.83 126 1 C B ASP 151 ? ? O D LYS 227 ? ? 1.83 127 1 C B HIS 125 ? ? CZ D TYR 193 ? ? 1.83 128 1 CG B ASP 151 ? ? O D LYS 227 ? ? 1.83 129 1 NE2 B HIS 125 ? ? O D PRO 189 ? ? 1.85 130 1 OD2 B ASP 151 ? ? C D GLY 228 ? ? 1.85 131 1 CA B LYS 128 ? ? CD1 D TYR 193 ? ? 1.85 132 1 O B GLY 191 ? ? CB C LYS 128 ? ? 1.86 133 1 NE2 B HIS 125 ? ? N D PRO 189 ? ? 1.87 134 1 CB B LYS 128 ? ? CD2 D TYR 193 ? ? 1.87 135 1 C B GLU 126 ? ? CG1 D VAL 231 ? ? 1.87 136 1 CA B PRO 189 ? ? CA C GLU 126 ? ? 1.88 137 1 CA B ASP 151 ? ? C D LYS 227 ? ? 1.88 138 1 O B VAL 200 ? ? NZ C LYS 128 ? ? 1.88 139 1 CG B ASP 151 ? ? N D GLY 228 ? ? 1.89 140 1 CA B GLY 191 ? ? O C LYS 128 ? ? 1.90 141 1 CG B GLU 126 ? ? CG D LYS 188 ? ? 1.90 142 1 O B PRO 189 ? ? O C HIS 125 ? ? 1.90 143 1 CG B LYS 124 ? ? N D ASN 226 ? ? 1.90 144 1 CE B LYS 128 ? ? CB D VAL 200 ? ? 1.91 145 1 O B HIS 125 ? ? CD1 D TYR 193 ? ? 1.91 146 1 CD B GLU 126 ? ? C D LYS 188 ? ? 1.91 147 1 CG B ASP 151 ? ? N D ARG 229 ? ? 1.92 148 1 CD B LYS 128 ? ? CB D TYR 193 ? ? 1.92 149 1 N B GLY 127 ? ? CB D VAL 231 ? ? 1.92 150 1 O B GLY 191 ? ? CA C LYS 128 ? ? 1.92 151 1 O B GLU 190 ? ? O C LYS 128 ? ? 1.92 152 1 CB B LYS 128 ? ? CB D TYR 193 ? ? 1.93 153 1 O B GLU 122 ? ? N D LYS 227 ? ? 1.93 154 1 N B TYR 202 ? ? CE C LYS 128 ? ? 1.93 155 1 NZ B LYS 128 ? ? O D TYR 193 ? ? 1.94 156 1 CB B LYS 128 ? ? C D HIS 192 ? ? 1.95 157 1 N B HIS 192 ? ? N C VAL 129 ? ? 1.95 158 1 C B LYS 124 ? ? CB D ASP 225 ? ? 1.95 159 1 CB B VAL 129 ? ? ND2 D ASN 194 ? ? 1.96 160 1 C B GLU 122 ? ? C D ASN 226 ? ? 1.96 161 1 O B GLU 190 ? ? C C HIS 125 ? ? 1.96 162 1 O B GLU 126 ? ? CG1 D VAL 231 ? ? 1.97 163 1 C B ILE 150 ? ? CB D LYS 227 ? ? 1.97 164 1 O B GLU 122 ? ? O D ASN 226 ? ? 1.98 165 1 CZ B TYR 193 ? ? N C GLY 127 ? ? 1.99 166 1 N B LYS 128 ? ? CB D TYR 193 ? ? 2.00 167 1 CA B VAL 149 ? ? NZ D LYS 227 ? ? 2.00 168 1 ND1 B HIS 125 ? ? N D PRO 189 ? ? 2.00 169 1 CD2 B HIS 125 ? ? O D PRO 189 ? ? 2.01 170 1 OE2 B GLU 126 ? ? CA D LYS 188 ? ? 2.01 171 1 OE1 B GLU 126 ? ? CB D LYS 188 ? ? 2.02 172 1 CB B PRO 189 ? ? N C GLU 126 ? ? 2.03 173 1 O B GLU 190 ? ? CA C HIS 125 ? ? 2.04 174 1 CA B GLU 190 ? ? C C HIS 125 ? ? 2.04 175 1 CA B LYS 124 ? ? N D ASN 226 ? ? 2.04 176 1 O B LYS 188 ? ? CA C GLU 126 ? ? 2.04 177 1 CG B ASP 151 ? ? C D LYS 227 ? ? 2.05 178 1 C B GLN 201 ? ? CE C LYS 128 ? ? 2.05 179 1 O B VAL 149 ? ? CD D LYS 227 ? ? 2.05 180 1 N B ASP 151 ? ? CA D LYS 227 ? ? 2.05 181 1 N B PRO 189 ? ? CA C GLU 126 ? ? 2.05 182 1 N B PRO 189 ? ? N C GLU 126 ? ? 2.06 183 1 CD2 B TYR 193 ? ? O C GLY 127 ? ? 2.06 184 1 CG B HIS 125 ? ? CD D PRO 189 ? ? 2.06 185 1 C B GLY 191 ? ? C C LYS 128 ? ? 2.07 186 1 O B GLU 190 ? ? N C HIS 125 ? ? 2.08 187 1 C B GLY 127 ? ? O D PHE 224 ? ? 2.08 188 1 CG B LYS 124 ? ? N D ASP 225 ? ? 2.08 189 1 N B VAL 149 ? ? NZ D LYS 227 ? ? 2.08 190 1 C B GLY 191 ? ? CG C LYS 128 ? ? 2.09 191 1 CG1 B VAL 149 ? ? NH2 D ARG 229 ? ? 2.10 192 1 O B HIS 125 ? ? CE2 D TYR 193 ? ? 2.10 193 1 CG B HIS 125 ? ? OH D TYR 193 ? ? 2.10 194 1 NE2 B HIS 125 ? ? CD D PRO 189 ? ? 2.10 195 1 O B GLU 122 ? ? C D ASN 226 ? ? 2.11 196 1 OD1 B ASP 151 ? ? CA D ARG 229 ? ? 2.11 197 1 O B GLY 191 ? ? NZ C LYS 128 ? ? 2.12 198 1 O B LYS 188 ? ? CG C GLU 126 ? ? 2.13 199 1 CD B LYS 124 ? ? C D ASP 225 ? ? 2.13 200 1 N B GLY 191 ? ? N C LYS 128 ? ? 2.13 201 1 CG B LYS 128 ? ? CB D TYR 193 ? ? 2.13 202 1 C B GLY 127 ? ? CD1 D TYR 193 ? ? 2.14 203 1 CD B LYS 124 ? ? N D ASP 225 ? ? 2.14 204 1 C B GLU 190 ? ? C C HIS 125 ? ? 2.14 205 1 N B THR 130 ? ? OD1 D ASN 226 ? ? 2.14 206 1 CA B HIS 192 ? ? NZ C LYS 128 ? ? 2.15 207 1 CB B ASP 151 ? ? CA D LYS 227 ? ? 2.15 208 1 O B ASP 151 ? ? O D LYS 227 ? ? 2.15 209 1 C B LYS 188 ? ? CA C GLU 126 ? ? 2.15 210 1 O B GLY 191 ? ? CE C LYS 128 ? ? 2.15 211 1 CA B GLY 191 ? ? N C LYS 128 ? ? 2.15 212 1 N B GLY 191 ? ? O C HIS 125 ? ? 2.16 213 1 C B PRO 189 ? ? C C GLU 126 ? ? 2.16 214 1 CD B LYS 128 ? ? O D VAL 200 ? ? 2.16 215 1 CA B PRO 189 ? ? C C HIS 125 ? ? 2.16 216 1 CB B LYS 128 ? ? O D HIS 192 ? ? 2.17 217 1 C B HIS 192 ? ? O C GLY 127 ? ? 2.17 218 1 CE2 B TYR 193 ? ? O C GLY 127 ? ? 2.17 219 1 N B ASP 151 ? ? O D LYS 227 ? ? 2.17 220 1 C B GLU 126 ? ? CG2 D VAL 231 ? ? 2.17 221 1 C B GLU 126 ? ? CB D VAL 231 ? ? 2.18 222 1 CD B LYS 128 ? ? N D TYR 193 ? ? 2.19 223 1 N B HIS 125 ? ? CB D ASP 225 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 134 ? ? CB A CYS 134 ? ? SG A CYS 134 ? ? 121.35 114.20 7.15 1.10 N 2 1 CA B CYS 134 ? ? CB B CYS 134 ? ? SG B CYS 134 ? ? 121.32 114.20 7.12 1.10 N 3 1 CA C CYS 134 ? ? CB C CYS 134 ? ? SG C CYS 134 ? ? 121.32 114.20 7.12 1.10 N 4 1 CA D CYS 134 ? ? CB D CYS 134 ? ? SG D CYS 134 ? ? 121.31 114.20 7.11 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 151 ? ? -75.94 41.62 2 1 GLU A 169 ? ? -162.15 76.16 3 1 GLU A 187 ? ? -61.62 95.83 4 1 HIS A 197 ? ? -99.80 52.42 5 1 ASN A 252 ? ? -164.90 79.68 6 1 ASP B 151 ? ? -76.00 41.64 7 1 GLU B 169 ? ? -162.14 76.26 8 1 GLU B 187 ? ? -61.63 95.72 9 1 HIS B 197 ? ? -99.77 52.54 10 1 ASN B 252 ? ? -164.88 79.66 11 1 ASP C 151 ? ? -76.03 41.64 12 1 GLU C 169 ? ? -162.15 76.21 13 1 GLU C 187 ? ? -61.59 95.66 14 1 HIS C 197 ? ? -99.71 52.48 15 1 ASN C 252 ? ? -164.90 79.70 16 1 ASP D 151 ? ? -75.88 41.52 17 1 GLU D 169 ? ? -162.22 76.20 18 1 GLU D 187 ? ? -61.65 95.63 19 1 HIS D 197 ? ? -99.87 52.55 20 1 ASN D 252 ? ? -164.88 79.59 # _pdbx_point_symmetry.entry_id 1DYL _pdbx_point_symmetry.Schoenflies_symbol I # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS [A,B,C,D]C IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 1DYL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria R-factor _em_3d_fitting.details ;METHOD--THE CRYSTAL STRUCTURE OF THE CAPSID PROTEIN FROM CHOI ET AL (1997) PROTEINS 3 27,345-359 (SUBUNIT A OF PDB FILE 1VCQ) WAS PLACED INTO THE CRYO-EM DENSITY MAP. THE CAPSID PROTEIN WAS FIRST MANUALLY POSITIONED INTO THE CRYO-EM DENSITY CORRESPONDING TO POSITIONS OF THE FOUR INDEPENDENT MONOMER DENSITIES BETWEEN THE INNER LEAFLET OF THE BILAYER AND THE RNA. THESE POSITIONS WERE THEN REFINED BY RIGID BODY REFINEMENT IN REAL SPACE WITH THE PROGRAM EMFIT (CHENG ET AL. 1995, CELL 80, 621-630). THE QUALITY OF THE FIT CAN BE SEEN FROM THE MAP DENSITY WITHIN THE PROTEIN. ALL 4563 ATOMS ARE IN DENSITY OF AT LEAST 4 SIGMA (96.73) ABOVE THE AVERAGE (512.04) , 1167 ATOMS ARE IN DENSITY BETWEEN 4 AND 5 SIGMA, 3174 ATOMS ARE IN DENSITY BETWEEN 5 AND 6 SIGMA, AND 222 ATOMS ARE IN DENSTY OF 6 SIGMA OR ABOVE. THE VARIATION IN DENSITY OVER THE FITTED PROTEIN CAN BE VISUALIZED WITH THE PSEUDO TEMPERATURE FACTOR. THE DENSITY VALUE AT EACH ATOM IS GIVEN IN THE 8TH COLUM (USUALLY THE OCCUPANCY) AS THE NUMBER OF STANDARD DEVIATION ABOVE BACKGROUND. COLUMN NINE (USUALLY THE TEMPERATURE FACTOR) CONTAINS THE VALUE OF THE RELATIVE DENSITY WITHIN THE FITTED PROTEIN SCALED LINEARLY SO THAT THE MINIMUM DENSITY IS 100.0 AND THE MAXIMUM DENSITY IS 1.0. THE ATOMS THAT LIE IN THE LOWER DENSITY REGIONS WILL HAVE THE HIGHEST PSEUDO TEMPERATURE FACTORS. REFINEMENT PROTOCOL--RIGID BODY REFINEMENT ; _em_3d_fitting.method ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 1DYL _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 1DYL _em_3d_fitting_list.details ? # _em_3d_reconstruction.entry_id 1DYL _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 5267 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method ;MODEL-BASED, POLAR-FOURIER- TRANSFORMATION (FULLER ET AL. 1996, J.STRUC.BIOL. 116, 48-55; BAKER AND CHENG 1996, J.STRUC.BIOL. 116, 120- 130) MODEL-BASED CROSS COMMOM LINES SEARCH AND REFINEMENT (CROWTHER ET AL. 1970, NATURE (LONDON) 226, 421- 425; FULLER ET AL. 1996, J.STRUC.BIOL. 11 48-55;FERLENGHI ET AL. 1998, J.MOL.BIOL. 283, 71-81) ; _em_3d_reconstruction.nominal_pixel_size 2.640 _em_3d_reconstruction.actual_pixel_size 2.520 _em_3d_reconstruction.resolution 9.000 _em_3d_reconstruction.magnification_calibration ;THE PIXEL SIZE OF THE CRYO-EM MAP WAS CALIBRATED AGAINST A LOW RESOLUTION DENSITY MAP CALCULATED FROM THE CRYSTAL STRUCTURE OF HRV16. DENSITIES WERE COMPARED BY CROSS- CORRELATION WITHIN A SPHERICAL SHELL OF INTERNAL RADIUS 110 ANGSTROMS AND EXTERNAL RADIUS OF 145 ANGSTROMS. ; _em_3d_reconstruction.details ;THE ORIENTATIONS WERE REFINED BY THE CROSS COMMON LINES LINES METHOD (SIMPLEX) AND THE POLAR FOURIER TRANSFORM METHOD USING A PARALLEL IMPLEMENTATION (PYPFT). THE EFFECTIVE RESOLUTION OF THE FINAL RECONSTRUCTED DENSITY WAS DETERMINED TO BE AT LEAST 9 ANGSTROMS, AS MEASURED BY RANDOMLY SPLITTING THE PARTICLES INTO TWO SETS AND CALCULATING THE FOURIER SHELL CORRELATION OBTAINED FROM SEPARATE RECONSTRUCTIONS (HARAUZ AND VAN HEEL 1986, OPTIK 73, 146-156). THE EIGENVALUE SPECTRUM GAVE AN INDICATION OF THE RANDOMNESS OF THE DATA THAT WAS INCLUDED IN THE RECONSTRUCTION. THE COMPLETENESS OF THE DATA WAS VERIFIED IN THAT ALL EIGENVALUES EXCEEDED 100. THE COORDINATES ARE IN THE P, Q, R FRAME IN ANGSTROM UNITS AND CORRESPOND TO ICOSAHEDRAL SYMMETRY AXES. THE ORIGIN IS CHOSEN AT THE CENTER OF THE VIRUS WITH P, Q AND R ALONG MUTUALLY PERPENDICULAR TWO-FOLD AXES OF THE ICOSAHEDRON. THEY SHOULD REMAIN IN THAT FRAME FOR THE EASE OF THE USER IN CREATING THE BIOLOGICALLY SIGNIFICANT VIRAL COMPLEX PARTICLE USING THE 60 ICOSAHEDRAL SYMMETRY OPERATORS. RESIDUES NOT VISIBLE IN THE ORIGINAL CRYSTAL STRUCTURES ARE NOT INCLUDED IN THE CRYO-EM STRUCTURE MODEL. FOR EXAMPLE, C RESIDUES 1-118, ARE NOT VISIBLE IN THE CRYSTAL STRUCTURE (PDB ENTRY 1VCQ) AND THEREFORE ARE NOT INCLUDED IN THE COORDINATES BELOW. ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.refinement_type ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.pH 7.6 _em_buffer.details ? # _em_entity_assembly.id 1 _em_entity_assembly.name 'SEMLIKI FOREST VIRUS' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 1DYL _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 48 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 1DYL _em_imaging.id 1 _em_imaging.microscope_model 'FEI/PHILIPS CM200FEG' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode OTHER _em_imaging.specimen_id 1 _em_imaging.date 1998-06-15 _em_imaging.temperature 95 _em_imaging.nominal_defocus_min 975 _em_imaging.nominal_defocus_max 7600 _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs 2 _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details '400 MESH COPPER, HOLEY CARBON, GLOW DISCHARGE,' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type ? # _em_vitrification.entry_id 1DYL _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details ;PLUNGE VITRIFICATION SAMPLES PREPARED AS THIN LAYERS OF VITREOUS ICE MAINTAINED AT NEAR LIQUID NITROGEN TEMPERATURE IN THE ELECTRON MICROSCOPE WITH A GATAN 626-0300 CRYOTRANSFER HOLDER. ; _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? _em_vitrification.chamber_temperature ? # _em_experiment.entry_id 1DYL _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 1DYL _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 10 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 EMfit ? 'MODEL FITTING' ? ? ? 1 2 'MRC IMAGE PROCESSING PACKAGE' ? 'PARTICLE SELECTION' ? 1 ? ? 3 SPIDER ? 'PARTICLE SELECTION' ? 1 ? ? 4 ? ? RECONSTRUCTION 'PYPFT, SIMPLEX Procedure' 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DYL # _atom_sites.entry_id 1DYL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_