HEADER SUGAR BINDING PROTEIN 07-MAR-00 1DZQ TITLE LECTIN UEA-II COMPLEXED WITH GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN II; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: UEA-II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ULEX EUROPAEUS; SOURCE 3 ORGANISM_COMMON: FURZE; SOURCE 4 ORGANISM_TAXID: 3902; SOURCE 5 ORGAN: SEED KEYWDS CARBOHYDRATE BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.LORIS,H.DE GREVE,M.-H.DAO-THI,J.MESSENS,A.IMBERTY,L.WYNS REVDAT 11 13-NOV-24 1DZQ 1 REMARK REVDAT 10 06-DEC-23 1DZQ 1 HETSYN REVDAT 9 29-JUL-20 1DZQ 1 COMPND REMARK HETNAM LINK REVDAT 9 2 1 SITE REVDAT 8 24-JUL-19 1DZQ 1 REMARK LINK REVDAT 7 31-AUG-11 1DZQ 1 REVDAT REVDAT 6 24-AUG-11 1DZQ 1 HEADER COMPND KEYWDS REMARK REVDAT 6 2 1 DBREF SEQADV HETSYN FORMUL REVDAT 6 3 1 VERSN REVDAT 5 21-JUL-09 1DZQ 1 DBREF REVDAT 4 24-FEB-09 1DZQ 1 VERSN REVDAT 3 02-SEP-00 1DZQ 1 JRNL REVDAT 2 21-JUL-00 1DZQ 1 REMARK REVDAT 1 22-JUN-00 1DZQ 0 JRNL AUTH R.LORIS,H.DE GREVE,M.-H.DAO-THI,J.MESSENS,A.IMBERTY,L.WYNS JRNL TITL STRUCTURAL BASIS OF CARBOHYDRATE RECOGNITION BY LECTIN II JRNL TITL 2 FROM ULEX EUROPAEUS, A PROTEIN WITH A PROMISCUOUS JRNL TITL 3 CARBOHYDRATE BINDING SITE JRNL REF J.MOL.BIOL. V. 301 987 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10966800 JRNL DOI 10.1006/JMBI.2000.4016 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 0.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2088 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2948 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 262 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7168 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.480 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.14 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.156 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1290004713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.909 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26439 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 16.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.420 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.19300 REMARK 200 FOR THE DATA SET : 10.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.35 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.68600 REMARK 200 FOR SHELL : 3.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: PDB ENTRY 1QOT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.86667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.43333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.43333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 116.86667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 41 REMARK 465 PRO A 42 REMARK 465 ALA A 240 REMARK 465 ASN A 241 REMARK 465 ASN A 242 REMARK 465 ASN B 1 REMARK 465 LEU B 2 REMARK 465 ALA B 240 REMARK 465 ASN B 241 REMARK 465 ASN B 242 REMARK 465 ASN C 1 REMARK 465 LEU C 2 REMARK 465 ALA C 240 REMARK 465 ASN C 241 REMARK 465 ASN C 242 REMARK 465 ASN D 1 REMARK 465 LEU D 2 REMARK 465 ALA D 240 REMARK 465 ASN D 241 REMARK 465 ASN D 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 OG REMARK 470 GLU A 239 CA C O CB CG CD OE1 REMARK 470 GLU A 239 OE2 REMARK 470 SER B 3 OG REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 GLU B 239 CA C O CB CG CD OE1 REMARK 470 GLU B 239 OE2 REMARK 470 SER C 3 OG REMARK 470 LYS C 41 CG CD CE NZ REMARK 470 GLU C 239 CA C O CB CG CD OE1 REMARK 470 GLU C 239 OE2 REMARK 470 SER D 3 OG REMARK 470 LYS D 41 CG CD CE NZ REMARK 470 GLU D 239 CA C O CB CG CD OE1 REMARK 470 GLU D 239 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 7 114.04 -165.53 REMARK 500 LYS A 81 -155.81 -85.65 REMARK 500 SER A 116 54.45 -115.98 REMARK 500 ASP A 141 41.76 -86.73 REMARK 500 GLU A 223 52.18 -112.58 REMARK 500 SER B 7 114.67 -165.56 REMARK 500 LYS B 41 -71.39 -41.40 REMARK 500 LYS B 81 -155.66 -85.89 REMARK 500 SER B 116 54.25 -116.01 REMARK 500 ASP B 141 41.78 -87.00 REMARK 500 GLU B 223 51.93 -112.64 REMARK 500 SER C 7 114.47 -165.73 REMARK 500 LYS C 81 -156.43 -85.61 REMARK 500 SER C 116 54.51 -116.20 REMARK 500 ASP C 141 41.84 -86.58 REMARK 500 GLU C 223 52.42 -112.45 REMARK 500 SER D 7 114.20 -164.96 REMARK 500 LYS D 41 -89.58 -32.48 REMARK 500 LYS D 81 -156.17 -85.88 REMARK 500 SER D 116 54.46 -116.08 REMARK 500 ASP D 141 41.78 -86.58 REMARK 500 GLU D 223 52.10 -112.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 126 OE2 REMARK 620 2 ASP A 128 OD2 88.1 REMARK 620 3 ASP A 139 OD1 171.2 87.5 REMARK 620 4 HIS A 144 NE2 87.6 86.5 84.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD1 REMARK 620 2 ASP A 128 OD2 51.3 REMARK 620 3 TYR A 130 O 74.9 100.8 REMARK 620 4 ASN A 136 OD1 162.1 145.7 92.6 REMARK 620 5 ASP A 139 OD2 110.1 72.5 79.4 79.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 126 OE2 REMARK 620 2 ASP B 128 OD2 85.3 REMARK 620 3 ASP B 139 OD1 165.4 84.0 REMARK 620 4 HIS B 144 NE2 86.5 82.2 82.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 128 OD2 REMARK 620 2 ASP B 128 OD1 52.4 REMARK 620 3 TYR B 130 O 106.7 79.1 REMARK 620 4 ASN B 136 OD1 146.1 160.5 95.2 REMARK 620 5 ASP B 139 OD2 75.3 116.2 84.7 81.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 126 OE2 REMARK 620 2 ASP C 128 OD2 84.4 REMARK 620 3 ASP C 139 OD1 165.3 84.4 REMARK 620 4 HIS C 144 NE2 86.1 82.5 83.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 128 OD2 REMARK 620 2 ASP C 128 OD1 50.2 REMARK 620 3 TYR C 130 O 103.1 78.4 REMARK 620 4 ASN C 136 OD1 142.4 167.2 97.5 REMARK 620 5 ASP C 139 OD2 71.4 110.5 82.4 80.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 126 OE2 REMARK 620 2 ASP D 128 OD2 85.6 REMARK 620 3 ASP D 139 OD1 163.2 82.2 REMARK 620 4 HIS D 144 NE2 86.2 80.9 80.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 128 OD2 REMARK 620 2 ASP D 128 OD1 50.6 REMARK 620 3 TYR D 130 O 100.9 76.8 REMARK 620 4 ASN D 136 OD1 142.5 166.4 94.5 REMARK 620 5 ASP D 139 OD2 70.9 109.1 79.1 78.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QNW RELATED DB: PDB REMARK 900 LECTIN II FROM ULEX EUROPAEUS REMARK 900 RELATED ID: 1QOO RELATED DB: PDB REMARK 900 LECTIN UEA-II COMPLEXED WITH NAG REMARK 900 RELATED ID: 1QOS RELATED DB: PDB REMARK 900 LECTIN UEA-II COMPLEXED WITH CHITOBIOSE REMARK 900 RELATED ID: 1QOT RELATED DB: PDB REMARK 900 LECTIN UEA-II COMPLEXED WITH FUCOSYLLACTOSE AND REMARK 900 FUCOSYLGALACTOSELECTIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO ELECTRON DENSITY WAS SEEN FOR THE FOUR C-TERMINAL REMARK 999 RESIDUES (239 - 242) IN CHAINS A,B,C AND D. REMARK 999 GB REF AF190633 DBREF 1DZQ A 1 242 UNP Q9FVF8 Q9FVF8_ULEEU 1 242 DBREF 1DZQ B 1 242 UNP Q9FVF8 Q9FVF8_ULEEU 1 242 DBREF 1DZQ C 1 242 UNP Q9FVF8 Q9FVF8_ULEEU 1 242 DBREF 1DZQ D 1 242 UNP Q9FVF8 Q9FVF8_ULEEU 1 242 SEQADV 1DZQ ASP A 25 UNP Q9FVF8 ALA 25 CONFLICT SEQADV 1DZQ ILE A 62 UNP Q9FVF8 THR 62 CONFLICT SEQADV 1DZQ GLY A 106 UNP Q9FVF8 SER 106 CONFLICT SEQADV 1DZQ SER A 112 UNP Q9FVF8 ASN 112 CONFLICT SEQADV 1DZQ GLY A 191 UNP Q9FVF8 GLU 191 CONFLICT SEQADV 1DZQ VAL A 229 UNP Q9FVF8 ILE 229 CONFLICT SEQADV 1DZQ ASP B 25 UNP Q9FVF8 ALA 25 CONFLICT SEQADV 1DZQ ILE B 62 UNP Q9FVF8 THR 62 CONFLICT SEQADV 1DZQ GLY B 106 UNP Q9FVF8 SER 106 CONFLICT SEQADV 1DZQ SER B 112 UNP Q9FVF8 ASN 112 CONFLICT SEQADV 1DZQ GLY B 191 UNP Q9FVF8 GLU 191 CONFLICT SEQADV 1DZQ VAL B 229 UNP Q9FVF8 ILE 229 CONFLICT SEQADV 1DZQ ASP C 25 UNP Q9FVF8 ALA 25 CONFLICT SEQADV 1DZQ ILE C 62 UNP Q9FVF8 THR 62 CONFLICT SEQADV 1DZQ GLY C 106 UNP Q9FVF8 SER 106 CONFLICT SEQADV 1DZQ SER C 112 UNP Q9FVF8 ASN 112 CONFLICT SEQADV 1DZQ GLY C 191 UNP Q9FVF8 GLU 191 CONFLICT SEQADV 1DZQ VAL C 229 UNP Q9FVF8 ILE 229 CONFLICT SEQADV 1DZQ ASP D 25 UNP Q9FVF8 ALA 25 CONFLICT SEQADV 1DZQ ILE D 62 UNP Q9FVF8 THR 62 CONFLICT SEQADV 1DZQ GLY D 106 UNP Q9FVF8 SER 106 CONFLICT SEQADV 1DZQ SER D 112 UNP Q9FVF8 ASN 112 CONFLICT SEQADV 1DZQ GLY D 191 UNP Q9FVF8 GLU 191 CONFLICT SEQADV 1DZQ VAL D 229 UNP Q9FVF8 ILE 229 CONFLICT SEQRES 1 A 242 ASN LEU SER ASP ASP LEU SER PHE ASN PHE ASP LYS PHE SEQRES 2 A 242 VAL PRO ASN GLN LYS ASN ILE ILE PHE GLN GLY ASP ALA SEQRES 3 A 242 SER VAL SER THR THR GLY VAL LEU GLN VAL THR LYS VAL SEQRES 4 A 242 SER LYS PRO THR THR THR SER ILE GLY ARG ALA LEU TYR SEQRES 5 A 242 ALA ALA PRO ILE GLN ILE TRP ASP SER ILE THR GLY LYS SEQRES 6 A 242 VAL ALA SER PHE ALA THR SER PHE SER PHE VAL VAL LYS SEQRES 7 A 242 ALA ASP LYS SER ASP GLY VAL ASP GLY LEU ALA PHE PHE SEQRES 8 A 242 LEU ALA PRO ALA ASN SER GLN ILE PRO SER GLY SER SER SEQRES 9 A 242 ALA GLY MET PHE GLY LEU PHE SER SER SER ASP SER LYS SEQRES 10 A 242 SER SER ASN GLN ILE ILE ALA VAL GLU PHE ASP THR TYR SEQRES 11 A 242 PHE GLY LYS ALA TYR ASN PRO TRP ASP PRO ASP PHE LYS SEQRES 12 A 242 HIS ILE GLY ILE ASP VAL ASN SER ILE LYS SER ILE LYS SEQRES 13 A 242 THR VAL LYS TRP ASP TRP ARG ASN GLY GLU VAL ALA ASP SEQRES 14 A 242 VAL VAL ILE THR TYR ARG ALA PRO THR LYS SER LEU THR SEQRES 15 A 242 VAL CYS LEU SER TYR PRO SER ASP GLY THR SER ASN ILE SEQRES 16 A 242 ILE THR ALA SER VAL ASP LEU LYS ALA ILE LEU PRO GLU SEQRES 17 A 242 TRP VAL SER VAL GLY PHE SER GLY GLY VAL GLY ASN ALA SEQRES 18 A 242 ALA GLU PHE GLU THR HIS ASP VAL LEU SER TRP TYR PHE SEQRES 19 A 242 THR SER ASN LEU GLU ALA ASN ASN SEQRES 1 B 242 ASN LEU SER ASP ASP LEU SER PHE ASN PHE ASP LYS PHE SEQRES 2 B 242 VAL PRO ASN GLN LYS ASN ILE ILE PHE GLN GLY ASP ALA SEQRES 3 B 242 SER VAL SER THR THR GLY VAL LEU GLN VAL THR LYS VAL SEQRES 4 B 242 SER LYS PRO THR THR THR SER ILE GLY ARG ALA LEU TYR SEQRES 5 B 242 ALA ALA PRO ILE GLN ILE TRP ASP SER ILE THR GLY LYS SEQRES 6 B 242 VAL ALA SER PHE ALA THR SER PHE SER PHE VAL VAL LYS SEQRES 7 B 242 ALA ASP LYS SER ASP GLY VAL ASP GLY LEU ALA PHE PHE SEQRES 8 B 242 LEU ALA PRO ALA ASN SER GLN ILE PRO SER GLY SER SER SEQRES 9 B 242 ALA GLY MET PHE GLY LEU PHE SER SER SER ASP SER LYS SEQRES 10 B 242 SER SER ASN GLN ILE ILE ALA VAL GLU PHE ASP THR TYR SEQRES 11 B 242 PHE GLY LYS ALA TYR ASN PRO TRP ASP PRO ASP PHE LYS SEQRES 12 B 242 HIS ILE GLY ILE ASP VAL ASN SER ILE LYS SER ILE LYS SEQRES 13 B 242 THR VAL LYS TRP ASP TRP ARG ASN GLY GLU VAL ALA ASP SEQRES 14 B 242 VAL VAL ILE THR TYR ARG ALA PRO THR LYS SER LEU THR SEQRES 15 B 242 VAL CYS LEU SER TYR PRO SER ASP GLY THR SER ASN ILE SEQRES 16 B 242 ILE THR ALA SER VAL ASP LEU LYS ALA ILE LEU PRO GLU SEQRES 17 B 242 TRP VAL SER VAL GLY PHE SER GLY GLY VAL GLY ASN ALA SEQRES 18 B 242 ALA GLU PHE GLU THR HIS ASP VAL LEU SER TRP TYR PHE SEQRES 19 B 242 THR SER ASN LEU GLU ALA ASN ASN SEQRES 1 C 242 ASN LEU SER ASP ASP LEU SER PHE ASN PHE ASP LYS PHE SEQRES 2 C 242 VAL PRO ASN GLN LYS ASN ILE ILE PHE GLN GLY ASP ALA SEQRES 3 C 242 SER VAL SER THR THR GLY VAL LEU GLN VAL THR LYS VAL SEQRES 4 C 242 SER LYS PRO THR THR THR SER ILE GLY ARG ALA LEU TYR SEQRES 5 C 242 ALA ALA PRO ILE GLN ILE TRP ASP SER ILE THR GLY LYS SEQRES 6 C 242 VAL ALA SER PHE ALA THR SER PHE SER PHE VAL VAL LYS SEQRES 7 C 242 ALA ASP LYS SER ASP GLY VAL ASP GLY LEU ALA PHE PHE SEQRES 8 C 242 LEU ALA PRO ALA ASN SER GLN ILE PRO SER GLY SER SER SEQRES 9 C 242 ALA GLY MET PHE GLY LEU PHE SER SER SER ASP SER LYS SEQRES 10 C 242 SER SER ASN GLN ILE ILE ALA VAL GLU PHE ASP THR TYR SEQRES 11 C 242 PHE GLY LYS ALA TYR ASN PRO TRP ASP PRO ASP PHE LYS SEQRES 12 C 242 HIS ILE GLY ILE ASP VAL ASN SER ILE LYS SER ILE LYS SEQRES 13 C 242 THR VAL LYS TRP ASP TRP ARG ASN GLY GLU VAL ALA ASP SEQRES 14 C 242 VAL VAL ILE THR TYR ARG ALA PRO THR LYS SER LEU THR SEQRES 15 C 242 VAL CYS LEU SER TYR PRO SER ASP GLY THR SER ASN ILE SEQRES 16 C 242 ILE THR ALA SER VAL ASP LEU LYS ALA ILE LEU PRO GLU SEQRES 17 C 242 TRP VAL SER VAL GLY PHE SER GLY GLY VAL GLY ASN ALA SEQRES 18 C 242 ALA GLU PHE GLU THR HIS ASP VAL LEU SER TRP TYR PHE SEQRES 19 C 242 THR SER ASN LEU GLU ALA ASN ASN SEQRES 1 D 242 ASN LEU SER ASP ASP LEU SER PHE ASN PHE ASP LYS PHE SEQRES 2 D 242 VAL PRO ASN GLN LYS ASN ILE ILE PHE GLN GLY ASP ALA SEQRES 3 D 242 SER VAL SER THR THR GLY VAL LEU GLN VAL THR LYS VAL SEQRES 4 D 242 SER LYS PRO THR THR THR SER ILE GLY ARG ALA LEU TYR SEQRES 5 D 242 ALA ALA PRO ILE GLN ILE TRP ASP SER ILE THR GLY LYS SEQRES 6 D 242 VAL ALA SER PHE ALA THR SER PHE SER PHE VAL VAL LYS SEQRES 7 D 242 ALA ASP LYS SER ASP GLY VAL ASP GLY LEU ALA PHE PHE SEQRES 8 D 242 LEU ALA PRO ALA ASN SER GLN ILE PRO SER GLY SER SER SEQRES 9 D 242 ALA GLY MET PHE GLY LEU PHE SER SER SER ASP SER LYS SEQRES 10 D 242 SER SER ASN GLN ILE ILE ALA VAL GLU PHE ASP THR TYR SEQRES 11 D 242 PHE GLY LYS ALA TYR ASN PRO TRP ASP PRO ASP PHE LYS SEQRES 12 D 242 HIS ILE GLY ILE ASP VAL ASN SER ILE LYS SER ILE LYS SEQRES 13 D 242 THR VAL LYS TRP ASP TRP ARG ASN GLY GLU VAL ALA ASP SEQRES 14 D 242 VAL VAL ILE THR TYR ARG ALA PRO THR LYS SER LEU THR SEQRES 15 D 242 VAL CYS LEU SER TYR PRO SER ASP GLY THR SER ASN ILE SEQRES 16 D 242 ILE THR ALA SER VAL ASP LEU LYS ALA ILE LEU PRO GLU SEQRES 17 D 242 TRP VAL SER VAL GLY PHE SER GLY GLY VAL GLY ASN ALA SEQRES 18 D 242 ALA GLU PHE GLU THR HIS ASP VAL LEU SER TRP TYR PHE SEQRES 19 D 242 THR SER ASN LEU GLU ALA ASN ASN MODRES 1DZQ SER A 112 SER GLYCOSYLATION SITE MODRES 1DZQ SER B 112 SER GLYCOSYLATION SITE MODRES 1DZQ SER C 112 SER GLYCOSYLATION SITE MODRES 1DZQ SER D 112 SER GLYCOSYLATION SITE HET MN A 301 1 HET CA A 302 1 HET NAG A 401 14 HET GAL A 502 12 HET MN B 301 1 HET CA B 302 1 HET NAG B 401 14 HET MN C 301 1 HET CA C 302 1 HET NAG C 401 14 HET GAL C 502 12 HET MN D 301 1 HET CA D 302 1 HET NAG D 401 14 HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 5 MN 4(MN 2+) FORMUL 6 CA 4(CA 2+) FORMUL 7 NAG 4(C8 H15 N O6) FORMUL 8 GAL 2(C6 H12 O6) HELIX 1 1 SER A 104 PHE A 108 5 5 HELIX 2 2 LYS A 117 GLN A 121 5 5 HELIX 3 3 ASP A 201 LEU A 206 1 6 HELIX 4 4 ASN A 220 PHE A 224 5 5 HELIX 5 5 SER B 104 PHE B 108 5 5 HELIX 6 6 LYS B 117 GLN B 121 5 5 HELIX 7 7 ASP B 201 LEU B 206 1 6 HELIX 8 8 ASN B 220 PHE B 224 5 5 HELIX 9 9 SER C 104 PHE C 108 5 5 HELIX 10 10 LYS C 117 GLN C 121 5 5 HELIX 11 11 ASP C 201 LEU C 206 1 6 HELIX 12 12 ASN C 220 PHE C 224 5 5 HELIX 13 13 SER D 104 PHE D 108 5 5 HELIX 14 14 LYS D 117 GLN D 121 5 5 HELIX 15 15 ASP D 201 LEU D 206 1 6 HELIX 16 16 ASN D 220 PHE D 224 5 5 SHEET 1 A 6 LEU A 6 PHE A 10 0 SHEET 2 A 6 ASP A 228 ASN A 237 -1 N SER A 236 O LEU A 6 SHEET 3 A 6 SER A 68 VAL A 76 -1 N VAL A 76 O ASP A 228 SHEET 4 A 6 VAL A 167 ARG A 175 -1 N TYR A 174 O PHE A 69 SHEET 5 A 6 SER A 180 TYR A 187 -1 N SER A 186 O ASP A 169 SHEET 6 A 6 THR A 192 SER A 199 -1 N ALA A 198 O LEU A 181 SHEET 1 B 7 ILE A 20 GLY A 24 0 SHEET 2 B 7 SER A 46 TYR A 52 -1 N LEU A 51 O ILE A 21 SHEET 3 B 7 VAL A 210 VAL A 218 -1 N VAL A 218 O SER A 46 SHEET 4 B 7 GLY A 87 PRO A 94 -1 N ALA A 93 O SER A 211 SHEET 5 B 7 ILE A 123 ASP A 128 -1 N PHE A 127 O LEU A 88 SHEET 6 B 7 HIS A 144 VAL A 149 -1 N ASP A 148 O ALA A 124 SHEET 7 B 7 LYS A 156 LYS A 159 -1 N VAL A 158 O ILE A 145 SHEET 1 C 6 LEU B 6 PHE B 10 0 SHEET 2 C 6 ASP B 228 ASN B 237 -1 N SER B 236 O LEU B 6 SHEET 3 C 6 SER B 68 VAL B 76 -1 N VAL B 76 O ASP B 228 SHEET 4 C 6 VAL B 167 ARG B 175 -1 N TYR B 174 O PHE B 69 SHEET 5 C 6 SER B 180 TYR B 187 -1 N SER B 186 O ASP B 169 SHEET 6 C 6 THR B 192 SER B 199 -1 N ALA B 198 O LEU B 181 SHEET 1 D 7 ILE B 20 GLY B 24 0 SHEET 2 D 7 SER B 46 TYR B 52 -1 N LEU B 51 O ILE B 21 SHEET 3 D 7 VAL B 210 VAL B 218 -1 N VAL B 218 O SER B 46 SHEET 4 D 7 GLY B 87 PRO B 94 -1 N ALA B 93 O SER B 211 SHEET 5 D 7 ILE B 123 ASP B 128 -1 N PHE B 127 O LEU B 88 SHEET 6 D 7 HIS B 144 VAL B 149 -1 N ASP B 148 O ALA B 124 SHEET 7 D 7 LYS B 156 LYS B 159 -1 N VAL B 158 O ILE B 145 SHEET 1 E 6 LEU C 6 PHE C 10 0 SHEET 2 E 6 ASP C 228 ASN C 237 -1 N SER C 236 O LEU C 6 SHEET 3 E 6 SER C 68 VAL C 76 -1 N VAL C 76 O ASP C 228 SHEET 4 E 6 VAL C 167 ARG C 175 -1 N TYR C 174 O PHE C 69 SHEET 5 E 6 SER C 180 TYR C 187 -1 N SER C 186 O ASP C 169 SHEET 6 E 6 THR C 192 SER C 199 -1 N ALA C 198 O LEU C 181 SHEET 1 F 7 ILE C 20 GLY C 24 0 SHEET 2 F 7 SER C 46 TYR C 52 -1 N LEU C 51 O ILE C 21 SHEET 3 F 7 VAL C 210 VAL C 218 -1 N VAL C 218 O SER C 46 SHEET 4 F 7 GLY C 87 PRO C 94 -1 N ALA C 93 O SER C 211 SHEET 5 F 7 ILE C 123 ASP C 128 -1 N PHE C 127 O LEU C 88 SHEET 6 F 7 HIS C 144 VAL C 149 -1 N ASP C 148 O ALA C 124 SHEET 7 F 7 LYS C 156 LYS C 159 -1 N VAL C 158 O ILE C 145 SHEET 1 G 6 LEU D 6 PHE D 10 0 SHEET 2 G 6 ASP D 228 ASN D 237 -1 N SER D 236 O LEU D 6 SHEET 3 G 6 SER D 68 VAL D 76 -1 N VAL D 76 O ASP D 228 SHEET 4 G 6 VAL D 167 ARG D 175 -1 N TYR D 174 O PHE D 69 SHEET 5 G 6 SER D 180 TYR D 187 -1 N SER D 186 O ASP D 169 SHEET 6 G 6 THR D 192 SER D 199 -1 N ALA D 198 O LEU D 181 SHEET 1 H 7 ILE D 20 GLY D 24 0 SHEET 2 H 7 SER D 46 TYR D 52 -1 N LEU D 51 O ILE D 21 SHEET 3 H 7 VAL D 210 VAL D 218 -1 N VAL D 218 O SER D 46 SHEET 4 H 7 GLY D 87 PRO D 94 -1 N ALA D 93 O SER D 211 SHEET 5 H 7 ILE D 123 ASP D 128 -1 N PHE D 127 O LEU D 88 SHEET 6 H 7 HIS D 144 VAL D 149 -1 N ASP D 148 O ALA D 124 SHEET 7 H 7 LYS D 156 LYS D 159 -1 N VAL D 158 O ILE D 145 SSBOND 1 CYS A 184 CYS C 184 1555 1555 2.03 SSBOND 2 CYS B 184 CYS D 184 1555 1555 2.02 LINK OG SER A 112 C1 NAG A 401 1555 1555 1.46 LINK OG SER B 112 C1 NAG B 401 1555 1555 1.46 LINK OG SER C 112 C1 NAG C 401 1555 1555 1.46 LINK OG SER D 112 C1 NAG D 401 1555 1555 1.46 LINK OE2 GLU A 126 MN MN A 301 1555 1555 2.09 LINK OD2 ASP A 128 MN MN A 301 1555 1555 2.08 LINK OD1 ASP A 128 CA CA A 302 1555 1555 2.25 LINK OD2 ASP A 128 CA CA A 302 1555 1555 2.75 LINK O TYR A 130 CA CA A 302 1555 1555 2.51 LINK OD1 ASN A 136 CA CA A 302 1555 1555 2.29 LINK OD1 ASP A 139 MN MN A 301 1555 1555 2.02 LINK OD2 ASP A 139 CA CA A 302 1555 1555 2.54 LINK NE2 HIS A 144 MN MN A 301 1555 1555 2.17 LINK OE2 GLU B 126 MN MN B 301 1555 1555 2.07 LINK OD2 ASP B 128 MN MN B 301 1555 1555 2.18 LINK OD2 ASP B 128 CA CA B 302 1555 1555 2.70 LINK OD1 ASP B 128 CA CA B 302 1555 1555 2.21 LINK O TYR B 130 CA CA B 302 1555 1555 2.36 LINK OD1 ASN B 136 CA CA B 302 1555 1555 2.34 LINK OD1 ASP B 139 MN MN B 301 1555 1555 2.07 LINK OD2 ASP B 139 CA CA B 302 1555 1555 2.38 LINK NE2 HIS B 144 MN MN B 301 1555 1555 2.23 LINK OE2 GLU C 126 MN MN C 301 1555 1555 2.11 LINK OD2 ASP C 128 MN MN C 301 1555 1555 2.19 LINK OD2 ASP C 128 CA CA C 302 1555 1555 2.82 LINK OD1 ASP C 128 CA CA C 302 1555 1555 2.26 LINK O TYR C 130 CA CA C 302 1555 1555 2.35 LINK OD1 ASN C 136 CA CA C 302 1555 1555 2.27 LINK OD1 ASP C 139 MN MN C 301 1555 1555 2.05 LINK OD2 ASP C 139 CA CA C 302 1555 1555 2.49 LINK NE2 HIS C 144 MN MN C 301 1555 1555 2.23 LINK OE2 GLU D 126 MN MN D 301 1555 1555 2.05 LINK OD2 ASP D 128 MN MN D 301 1555 1555 2.21 LINK OD2 ASP D 128 CA CA D 302 1555 1555 2.80 LINK OD1 ASP D 128 CA CA D 302 1555 1555 2.24 LINK O TYR D 130 CA CA D 302 1555 1555 2.45 LINK OD1 ASN D 136 CA CA D 302 1555 1555 2.29 LINK OD1 ASP D 139 MN MN D 301 1555 1555 2.12 LINK OD2 ASP D 139 CA CA D 302 1555 1555 2.55 LINK NE2 HIS D 144 MN MN D 301 1555 1555 2.27 CISPEP 1 VAL A 85 ASP A 86 0 1.05 CISPEP 2 VAL B 85 ASP B 86 0 0.28 CISPEP 3 LYS C 41 PRO C 42 0 1.30 CISPEP 4 VAL C 85 ASP C 86 0 -0.20 CISPEP 5 VAL D 85 ASP D 86 0 0.02 CRYST1 104.870 104.870 175.300 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009536 0.005505 0.000000 0.00000 SCALE2 0.000000 0.011011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005704 0.00000