HEADER INTEGRASE 25-MAR-00 1E0E TITLE N-TERMINAL ZINC-BINDING HHCC DOMAIN OF HIV-2 INTEGRASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL HHCC DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SOURCE 3 ROD); SOURCE 4 ORGANISM_COMMON: HIV-2; SOURCE 5 ORGANISM_TAXID: 11720; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTEGRASE, AIDS, POLYPROTEIN, DIMER, ZINC-BINDING PROTEIN, HELIX- KEYWDS 2 TURN-HELIX MOTIF EXPDTA SOLUTION NMR NUMMDL 32 AUTHOR A.P.A.M.EIJKELENBOOM,F.M.I.VAN DEN ENT,R.H.A.PLASTERK,R.KAPTEIN, AUTHOR 2 R.BOELENS REVDAT 6 15-MAY-24 1E0E 1 REMARK LINK REVDAT 5 15-JAN-20 1E0E 1 REMARK REVDAT 4 14-JUN-17 1E0E 1 REMARK REVDAT 3 24-FEB-09 1E0E 1 VERSN REVDAT 2 24-JUN-03 1E0E 1 HELIX CRYST1 REVDAT 1 19-MAR-01 1E0E 0 SPRSDE 11-APR-00 1E0E 1AUB JRNL AUTH A.P.A.M.EIJKELENBOOM,F.M.I.VAN DEN ENT,R.WECHSELBERGER, JRNL AUTH 2 R.H.A.PLASTERK,R.KAPTEIN,R.BOELENS JRNL TITL REFINED SOLUTION STRUCTURE OF THE DIMERIC N-TERMINAL HHCC JRNL TITL 2 DOMAIN OF HIV-2 INTEGRASE JRNL REF J.BIOMOL.NMR V. 18 119 2000 JRNL REFN ISSN 0925-2738 JRNL PMID 11101216 JRNL DOI 10.1023/A:1008342312269 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.P.A.M.EIJKELENBOOM,F.M.I.VAN DEN ENT,A.VOS, REMARK 1 AUTH 2 J.F.DORELEIJERS,K.HARD,T.D.TULLIUS,R.H.A.PLASTERK,R.KAPTEIN, REMARK 1 AUTH 3 R.BOELENS REMARK 1 TITL SOLUTION STRUCTURE OF THE N-TERMINAL HHCC DOMAIN OF HIV-2 REMARK 1 TITL 2 INTEGRASE: A THREE-HELIX BUNDLE STABILIZED BY ZINC REMARK 1 REF CURR.BIOL. V. 7 739 1997 REMARK 1 REFN ISSN 0960-9822 REMARK 1 PMID 9368756 REMARK 1 DOI 10.1016/S0960-9822(06)00332-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION REMARK 4 REMARK 4 1E0E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1290004760. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : D2O AND 5% D2O/95% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS; AMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 32 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOW OVERALL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: DETAILS CAN BE FOUND IN THE JRNL CITATION REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-32 REMARK 465 RES C SSSEQI REMARK 465 GLU A 48 REMARK 465 ALA A 49 REMARK 465 ILE A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 VAL A 54 REMARK 465 ASN A 55 REMARK 465 GLU B 48 REMARK 465 ALA B 49 REMARK 465 ILE B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLN B 53 REMARK 465 VAL B 54 REMARK 465 ASN B 55 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-32 REMARK 470 RES CSSEQI ATOMS REMARK 470 GLY A 47 CA C O REMARK 470 GLY B 47 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 15 17.65 -148.04 REMARK 500 1 TYR B 15 17.68 -148.06 REMARK 500 2 TYR A 15 16.92 -145.50 REMARK 500 2 TYR B 15 16.89 -145.48 REMARK 500 3 TYR A 15 15.80 -147.84 REMARK 500 3 PRO A 29 -165.77 -56.04 REMARK 500 3 TYR B 15 15.69 -147.88 REMARK 500 3 PRO B 29 -165.80 -55.93 REMARK 500 4 TYR A 15 14.97 -146.04 REMARK 500 4 LYS A 46 -86.41 59.42 REMARK 500 4 TYR B 15 15.06 -145.96 REMARK 500 4 LYS B 46 -86.46 59.42 REMARK 500 5 TYR A 15 12.67 -145.28 REMARK 500 5 TYR B 15 12.65 -145.32 REMARK 500 6 PHE A 26 -62.35 -92.54 REMARK 500 6 PRO A 29 -177.94 -55.53 REMARK 500 6 PHE B 26 -62.45 -92.49 REMARK 500 6 PRO B 29 -177.76 -55.66 REMARK 500 7 TYR A 15 18.05 -148.52 REMARK 500 7 HIS A 16 44.45 39.98 REMARK 500 7 PHE A 26 -69.81 -99.97 REMARK 500 7 LYS A 46 -85.16 -136.35 REMARK 500 7 TYR B 15 17.98 -148.33 REMARK 500 7 HIS B 16 44.44 39.99 REMARK 500 7 PHE B 26 -69.73 -100.08 REMARK 500 7 LYS B 46 -85.01 -136.28 REMARK 500 8 TYR A 15 14.88 -148.22 REMARK 500 8 TYR B 15 14.80 -148.25 REMARK 500 9 TYR A 15 14.10 -143.25 REMARK 500 9 PHE A 26 -71.17 -115.33 REMARK 500 9 LYS A 46 -66.72 -103.41 REMARK 500 9 TYR B 15 14.39 -143.20 REMARK 500 9 PHE B 26 -71.21 -115.37 REMARK 500 9 LYS B 46 -66.67 -103.46 REMARK 500 10 TYR A 15 15.72 -146.68 REMARK 500 10 PHE A 26 -67.20 -107.76 REMARK 500 10 TYR B 15 15.88 -146.63 REMARK 500 10 PHE B 26 -67.28 -107.70 REMARK 500 11 GLN A 45 -177.94 -67.34 REMARK 500 11 LYS A 46 103.85 60.23 REMARK 500 11 GLN B 45 -177.76 -67.34 REMARK 500 11 LYS B 46 103.76 60.11 REMARK 500 12 LYS A 46 -166.81 -113.93 REMARK 500 12 LYS B 46 -166.92 -113.98 REMARK 500 13 TYR A 15 20.15 -142.26 REMARK 500 13 PHE A 26 -64.52 -94.63 REMARK 500 13 PRO A 29 179.52 -56.97 REMARK 500 13 TYR B 15 19.94 -142.11 REMARK 500 13 PHE B 26 -64.55 -94.68 REMARK 500 13 PRO B 29 179.45 -57.04 REMARK 500 REMARK 500 THIS ENTRY HAS 107 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 147 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HIS A 16 ND1 109.6 REMARK 620 3 CYS A 40 SG 109.5 108.9 REMARK 620 4 CYS A 43 SG 109.8 109.7 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 147 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 12 NE2 REMARK 620 2 HIS B 16 ND1 109.6 REMARK 620 3 CYS B 40 SG 109.4 108.9 REMARK 620 4 CYS B 43 SG 109.7 109.7 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 147 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4619 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 TER REMARK 999 LYS: RESIDUES 47-55 ARE DISORDERED IN CHAIN A AND B, AND REMARK 999 NOT INCLUDED IN THE STRUCTURE CALCULATIONS DBREF 1E0E A 1 55 UNP P04584 POL_HV2RO 744 798 DBREF 1E0E B 1 55 UNP P04584 POL_HV2RO 744 798 SEQRES 1 A 55 PHE LEU GLU LYS ILE GLU PRO ALA GLN GLU GLU HIS GLU SEQRES 2 A 55 LYS TYR HIS SER ASN VAL LYS GLU LEU SER HIS LYS PHE SEQRES 3 A 55 GLY ILE PRO ASN LEU VAL ALA ARG GLN ILE VAL ASN SER SEQRES 4 A 55 CYS ALA GLN CYS GLN GLN LYS GLY GLU ALA ILE HIS GLY SEQRES 5 A 55 GLN VAL ASN SEQRES 1 B 55 PHE LEU GLU LYS ILE GLU PRO ALA GLN GLU GLU HIS GLU SEQRES 2 B 55 LYS TYR HIS SER ASN VAL LYS GLU LEU SER HIS LYS PHE SEQRES 3 B 55 GLY ILE PRO ASN LEU VAL ALA ARG GLN ILE VAL ASN SER SEQRES 4 B 55 CYS ALA GLN CYS GLN GLN LYS GLY GLU ALA ILE HIS GLY SEQRES 5 B 55 GLN VAL ASN HET ZN A 147 1 HET ZN B 147 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) HELIX 1 1 ILE A 5 TYR A 15 1 11 HELIX 2 2 VAL A 19 LYS A 25 1 7 HELIX 3 3 ASN A 30 SER A 39 1 10 HELIX 4 4 ALA A 41 GLN A 44 1 4 HELIX 5 1 ILE B 5 TYR B 15 1 11 HELIX 6 2 VAL B 19 LYS B 25 1 7 HELIX 7 3 ASN B 30 SER B 39 1 10 HELIX 8 4 ALA B 41 GLN B 44 1 4 LINK NE2 HIS A 12 ZN ZN A 147 1555 1555 2.00 LINK ND1 HIS A 16 ZN ZN A 147 1555 1555 2.01 LINK SG CYS A 40 ZN ZN A 147 1555 1555 2.30 LINK SG CYS A 43 ZN ZN A 147 1555 1555 2.30 LINK NE2 HIS B 12 ZN ZN B 147 1555 1555 2.00 LINK ND1 HIS B 16 ZN ZN B 147 1555 1555 2.01 LINK SG CYS B 40 ZN ZN B 147 1555 1555 2.30 LINK SG CYS B 43 ZN ZN B 147 1555 1555 2.30 SITE 1 AC1 4 HIS A 12 HIS A 16 CYS A 40 CYS A 43 SITE 1 AC2 4 HIS B 12 HIS B 16 CYS B 40 CYS B 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1