HEADER TRANSFERASE 28-APR-00 1E19 TITLE STRUCTURE OF THE CARBAMATE KINASE-LIKE CARBAMOYL PHOSPHATE SYNTHETASE TITLE 2 FROM THE HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS FURIOSUS BOUND TO ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBAMATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARBAMATE KINASE-LIKE CARBAMOYLPHOSPHATE SYNTETASE, COMPND 5 CARBAMATE KINASE-LIKE CARBAMOYLPHOSPHATE SYNTHASE; COMPND 6 EC: 2.7.2.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261 KEYWDS TRANSFERASE, HYPERTHERMOPHILES, ADP SITE, ARGININE METABOLISM KEYWDS 2 PHOSPHORYL GROUP TRANSFER EXPDTA X-RAY DIFFRACTION AUTHOR S.RAMON-MAIQUES,A.MARINA,M.URIARTE,I.FITA,V.RUBIO REVDAT 6 06-DEC-23 1E19 1 REMARK LINK REVDAT 5 30-MAY-12 1E19 1 COMPND KEYWDS JRNL REMARK REVDAT 5 2 1 VERSN DBREF HETSYN FORMUL REVDAT 4 24-FEB-09 1E19 1 VERSN REVDAT 3 05-SEP-00 1E19 1 COMPND REVDAT 2 21-JUL-00 1E19 1 DBREF REVDAT 1 04-JUL-00 1E19 0 JRNL AUTH S.RAMON-MAIQUES,A.MARINA,M.URIARTE,I.FITA,V.RUBIO JRNL TITL THE 1.5-A RESOLUTION CRYSTAL STRUCTURE OF THE CARBAMATE JRNL TITL 2 KINASE-LIKE CARBAMOYL PHOSPHATE SYNTHETASE FROM THE JRNL TITL 3 HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS FURIOSUS, BOUND TO JRNL TITL 4 ADP, CONFIRMS THAT THIS THERMOESTABLE ENZYME IS A CARBAMATE JRNL TITL 5 KINASE, AND PROVIDES INSIGHTS INTO SUBSTRATE BINDING AND JRNL TITL 6 STABILITY IN CARBAMATE KINASES JRNL REF J.MOL.BIOL. V. 299 463 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10860751 JRNL DOI 10.1006/JMBI.2000.3779 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 101284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6517 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 716 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.025 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1E19 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-00. REMARK 100 THE DEPOSITION ID IS D_1290004894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 76.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : 0.35500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1B7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3M SODIUM CITRATE 0.1M TRIS-HCL, REMARK 280 PH=8.5, 0-10% ETHYLENE GLYCOL PROTEIN SOLUTION: 10MG/ML OF REMARK 280 PROTEIN IN 10MM TRIS-HCL CONTAINING 20MM ATP AND MGCL2, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.70000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 225 O HOH A 2286 1.71 REMARK 500 O HOH A 2078 O HOH A 2190 1.73 REMARK 500 O HOH A 2208 O HOH A 2209 1.75 REMARK 500 O HOH A 2075 O HOH A 2078 1.84 REMARK 500 NZ LYS A 180 OE2 GLU A 184 1.91 REMARK 500 OE2 GLU B 290 O HOH B 2297 1.93 REMARK 500 O HOH A 2236 O HOH A 2237 2.01 REMARK 500 O HOH A 2237 O HOH A 2241 2.03 REMARK 500 O HOH B 2020 O HOH B 2054 2.04 REMARK 500 O HOH A 2031 O HOH A 2091 2.04 REMARK 500 O HOH A 2351 O HOH A 2354 2.05 REMARK 500 O HOH A 2034 O HOH A 2095 2.06 REMARK 500 O HOH B 2152 O HOH B 2153 2.07 REMARK 500 NH1 ARG A 43 OE2 GLU A 305 2.08 REMARK 500 O HOH A 2147 O HOH A 2354 2.09 REMARK 500 OE2 GLU A 305 O HOH A 2370 2.09 REMARK 500 O HOH B 2068 O HOH B 2195 2.10 REMARK 500 O HOH A 2163 O HOH A 2167 2.10 REMARK 500 O HOH A 2028 O HOH A 2029 2.12 REMARK 500 O HOH A 2029 O HOH A 2184 2.12 REMARK 500 OE2 GLU B 202 O HOH B 2219 2.14 REMARK 500 OE1 GLU A 184 O HOH A 2246 2.14 REMARK 500 NZ LYS B 221 O HOH B 2240 2.16 REMARK 500 O HOH B 2046 O HOH B 2121 2.18 REMARK 500 O HOH A 2046 O HOH B 2101 2.18 REMARK 500 O HOH B 2228 O HOH B 2232 2.18 REMARK 500 O HOH B 2027 O HOH B 2080 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 202 NH2 ARG B 147 3545 1.67 REMARK 500 O HOH A 2209 O HOH B 2154 3545 1.69 REMARK 500 O HOH A 2296 O HOH B 2280 2565 2.14 REMARK 500 OD2 ASP A 203 NH2 ARG B 144 3545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 210 CD GLU A 210 OE1 0.093 REMARK 500 GLU A 210 CD GLU A 210 OE2 -0.076 REMARK 500 GLU B 210 CD GLU B 210 OE1 0.070 REMARK 500 GLY B 272 N GLY B 272 CA 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 4 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 GLU A 24 OE1 - CD - OE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 GLU A 25 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 43 NH1 - CZ - NH2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 65 OD1 - CG - OD2 ANGL. DEV. = 15.6 DEGREES REMARK 500 ASP A 65 CB - CG - OD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 65 CB - CG - OD2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ALA A 66 O - C - N ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 123 CB - CG - OD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 TYR A 137 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 147 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 147 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 156 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 159 CD - NE - CZ ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP A 229 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TYR A 243 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LYS A 262 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 TYR A 263 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 263 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 283 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 GLU A 302 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 4 NH1 - CZ - NH2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG B 4 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 17 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 SER B 22 CA - C - O ANGL. DEV. = 14.7 DEGREES REMARK 500 SER B 22 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 TYR B 23 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR B 23 CB - CG - CD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 TYR B 23 CG - CD1 - CE1 ANGL. DEV. = 8.8 DEGREES REMARK 500 TYR B 23 CG - CD2 - CE2 ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR B 23 CD1 - CE1 - CZ ANGL. DEV. = -9.4 DEGREES REMARK 500 TYR B 23 CZ - CE2 - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 31 CD - NE - CZ ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG B 31 NE - CZ - NH1 ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG B 31 NE - CZ - NH2 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG B 35 CD - NE - CZ ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 96 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 53 14.21 -150.99 REMARK 500 THR A 130 14.47 -146.94 REMARK 500 SER A 157 28.21 46.05 REMARK 500 THR A 235 -156.11 -133.18 REMARK 500 ARG A 253 -106.78 -100.67 REMARK 500 SER A 273 -80.46 -152.56 REMARK 500 ASN B 53 19.32 -150.25 REMARK 500 SER B 157 27.09 46.86 REMARK 500 SER B 167 70.64 -118.64 REMARK 500 ARG B 253 -114.57 -112.19 REMARK 500 SER B 273 -89.24 -155.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 239 -12.07 REMARK 500 HIS B 296 10.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2004 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A2005 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 316 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 315 O2A REMARK 620 2 ADP A 315 O3B 80.7 REMARK 620 3 HOH A2342 O 90.3 168.3 REMARK 620 4 HOH A2344 O 91.5 97.2 90.5 REMARK 620 5 HOH A2389 O 90.7 92.5 80.0 170.2 REMARK 620 6 HOH A2391 O 170.9 90.2 98.9 88.2 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 316 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 315 O3B REMARK 620 2 ADP B 315 O1A 80.8 REMARK 620 3 HOH B2286 O 173.3 95.3 REMARK 620 4 HOH B2288 O 96.7 87.5 88.6 REMARK 620 5 HOH B2320 O 92.8 90.2 81.7 169.7 REMARK 620 6 HOH B2323 O 88.3 168.9 95.8 91.7 92.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B7B RELATED DB: PDB REMARK 900 CARBAMATE KINASE FROM ENTEROCOCCUS FAECIUM DBREF 1E19 A 1 314 UNP P95474 CPKA_PYRFU 1 314 DBREF 1E19 B 1 314 UNP P95474 CPKA_PYRFU 1 314 SEQRES 1 A 314 MET GLY LYS ARG VAL VAL ILE ALA LEU GLY GLY ASN ALA SEQRES 2 A 314 LEU GLN GLN ARG GLY GLN LYS GLY SER TYR GLU GLU MET SEQRES 3 A 314 MET ASP ASN VAL ARG LYS THR ALA ARG GLN ILE ALA GLU SEQRES 4 A 314 ILE ILE ALA ARG GLY TYR GLU VAL VAL ILE THR HIS GLY SEQRES 5 A 314 ASN GLY PRO GLN VAL GLY SER LEU LEU LEU HIS MET ASP SEQRES 6 A 314 ALA GLY GLN ALA THR TYR GLY ILE PRO ALA GLN PRO MET SEQRES 7 A 314 ASP VAL ALA GLY ALA MET SER GLN GLY TRP ILE GLY TYR SEQRES 8 A 314 MET ILE GLN GLN ALA LEU LYS ASN GLU LEU ARG LYS ARG SEQRES 9 A 314 GLY MET GLU LYS LYS VAL VAL THR ILE ILE THR GLN THR SEQRES 10 A 314 ILE VAL ASP LYS ASN ASP PRO ALA PHE GLN ASN PRO THR SEQRES 11 A 314 LYS PRO VAL GLY PRO PHE TYR ASP GLU GLU THR ALA LYS SEQRES 12 A 314 ARG LEU ALA ARG GLU LYS GLY TRP ILE VAL LYS GLU ASP SEQRES 13 A 314 SER GLY ARG GLY TRP ARG ARG VAL VAL PRO SER PRO ASP SEQRES 14 A 314 PRO LYS GLY HIS VAL GLU ALA GLU THR ILE LYS LYS LEU SEQRES 15 A 314 VAL GLU ARG GLY VAL ILE VAL ILE ALA SER GLY GLY GLY SEQRES 16 A 314 GLY VAL PRO VAL ILE LEU GLU ASP GLY GLU ILE LYS GLY SEQRES 17 A 314 VAL GLU ALA VAL ILE ASP LYS ASP LEU ALA GLY GLU LYS SEQRES 18 A 314 LEU ALA GLU GLU VAL ASN ALA ASP ILE PHE MET ILE LEU SEQRES 19 A 314 THR ASP VAL ASN GLY ALA ALA LEU TYR TYR GLY THR GLU SEQRES 20 A 314 LYS GLU GLN TRP LEU ARG GLU VAL LYS VAL GLU GLU LEU SEQRES 21 A 314 ARG LYS TYR TYR GLU GLU GLY HIS PHE LYS ALA GLY SER SEQRES 22 A 314 MET GLY PRO LYS VAL LEU ALA ALA ILE ARG PHE ILE GLU SEQRES 23 A 314 TRP GLY GLY GLU ARG ALA ILE ILE ALA HIS LEU GLU LYS SEQRES 24 A 314 ALA VAL GLU ALA LEU GLU GLY LYS THR GLY THR GLN VAL SEQRES 25 A 314 LEU PRO SEQRES 1 B 314 MET GLY LYS ARG VAL VAL ILE ALA LEU GLY GLY ASN ALA SEQRES 2 B 314 LEU GLN GLN ARG GLY GLN LYS GLY SER TYR GLU GLU MET SEQRES 3 B 314 MET ASP ASN VAL ARG LYS THR ALA ARG GLN ILE ALA GLU SEQRES 4 B 314 ILE ILE ALA ARG GLY TYR GLU VAL VAL ILE THR HIS GLY SEQRES 5 B 314 ASN GLY PRO GLN VAL GLY SER LEU LEU LEU HIS MET ASP SEQRES 6 B 314 ALA GLY GLN ALA THR TYR GLY ILE PRO ALA GLN PRO MET SEQRES 7 B 314 ASP VAL ALA GLY ALA MET SER GLN GLY TRP ILE GLY TYR SEQRES 8 B 314 MET ILE GLN GLN ALA LEU LYS ASN GLU LEU ARG LYS ARG SEQRES 9 B 314 GLY MET GLU LYS LYS VAL VAL THR ILE ILE THR GLN THR SEQRES 10 B 314 ILE VAL ASP LYS ASN ASP PRO ALA PHE GLN ASN PRO THR SEQRES 11 B 314 LYS PRO VAL GLY PRO PHE TYR ASP GLU GLU THR ALA LYS SEQRES 12 B 314 ARG LEU ALA ARG GLU LYS GLY TRP ILE VAL LYS GLU ASP SEQRES 13 B 314 SER GLY ARG GLY TRP ARG ARG VAL VAL PRO SER PRO ASP SEQRES 14 B 314 PRO LYS GLY HIS VAL GLU ALA GLU THR ILE LYS LYS LEU SEQRES 15 B 314 VAL GLU ARG GLY VAL ILE VAL ILE ALA SER GLY GLY GLY SEQRES 16 B 314 GLY VAL PRO VAL ILE LEU GLU ASP GLY GLU ILE LYS GLY SEQRES 17 B 314 VAL GLU ALA VAL ILE ASP LYS ASP LEU ALA GLY GLU LYS SEQRES 18 B 314 LEU ALA GLU GLU VAL ASN ALA ASP ILE PHE MET ILE LEU SEQRES 19 B 314 THR ASP VAL ASN GLY ALA ALA LEU TYR TYR GLY THR GLU SEQRES 20 B 314 LYS GLU GLN TRP LEU ARG GLU VAL LYS VAL GLU GLU LEU SEQRES 21 B 314 ARG LYS TYR TYR GLU GLU GLY HIS PHE LYS ALA GLY SER SEQRES 22 B 314 MET GLY PRO LYS VAL LEU ALA ALA ILE ARG PHE ILE GLU SEQRES 23 B 314 TRP GLY GLY GLU ARG ALA ILE ILE ALA HIS LEU GLU LYS SEQRES 24 B 314 ALA VAL GLU ALA LEU GLU GLY LYS THR GLY THR GLN VAL SEQRES 25 B 314 LEU PRO HET ADP A 315 27 HET MG A 316 1 HET ADP B 315 27 HET MG B 316 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *716(H2 O) HELIX 1 1 GLY A 10 LEU A 14 5 5 HELIX 2 2 SER A 22 ARG A 43 1 22 HELIX 3 3 ASN A 53 GLY A 72 1 20 HELIX 4 4 PRO A 77 ARG A 104 1 28 HELIX 5 5 ASP A 123 GLN A 127 5 5 HELIX 6 6 ASP A 138 GLY A 150 1 13 HELIX 7 7 GLU A 175 ARG A 185 1 11 HELIX 8 8 SER A 192 GLY A 196 5 5 HELIX 9 9 ASP A 214 VAL A 226 1 13 HELIX 10 10 VAL A 257 GLU A 266 1 10 HELIX 11 11 SER A 273 GLY A 288 1 16 HELIX 12 12 LYS A 299 GLU A 305 1 7 HELIX 13 13 GLY B 10 LEU B 14 5 5 HELIX 14 14 SER B 22 ARG B 43 1 22 HELIX 15 15 ASN B 53 GLY B 72 1 20 HELIX 16 16 PRO B 77 ARG B 104 1 28 HELIX 17 17 ASP B 123 ASN B 128 5 6 HELIX 18 18 ASP B 138 GLY B 150 1 13 HELIX 19 19 GLU B 175 ARG B 185 1 11 HELIX 20 20 SER B 192 GLY B 196 5 5 HELIX 21 21 ASP B 214 VAL B 226 1 13 HELIX 22 22 VAL B 257 GLY B 267 1 11 HELIX 23 23 SER B 273 GLY B 288 1 16 HELIX 24 24 LYS B 299 GLU B 305 1 7 SHEET 1 A 6 GLU A 46 THR A 50 0 SHEET 2 A 6 ARG A 4 ALA A 8 1 N VAL A 5 O GLU A 46 SHEET 3 A 6 ILE A 230 THR A 235 1 N ILE A 230 O VAL A 6 SHEET 4 A 6 ARG A 291 HIS A 296 1 N ARG A 291 O PHE A 231 SHEET 5 A 6 THR A 310 LEU A 313 -1 N VAL A 312 O ALA A 292 SHEET 6 A 6 GLU A 254 LYS A 256 1 N VAL A 255 O GLN A 311 SHEET 1 B 2 VAL A 110 THR A 112 0 SHEET 2 B 2 ILE A 188 ILE A 190 1 N ILE A 188 O VAL A 111 SHEET 1 C 4 GLU A 205 GLY A 208 0 SHEET 2 C 4 VAL A 197 GLU A 202 -1 N GLU A 202 O GLU A 205 SHEET 3 C 4 GLN A 116 VAL A 119 1 N THR A 117 O VAL A 197 SHEET 4 C 4 PRO A 170 HIS A 173 -1 N GLY A 172 O ILE A 118 SHEET 1 D 3 LYS A 131 VAL A 133 0 SHEET 2 D 3 TRP A 161 VAL A 165 -1 N VAL A 165 O LYS A 131 SHEET 3 D 3 ILE A 152 GLU A 155 -1 N LYS A 154 O ARG A 162 SHEET 1 E 6 GLU B 46 THR B 50 0 SHEET 2 E 6 ARG B 4 ALA B 8 1 N VAL B 5 O GLU B 46 SHEET 3 E 6 ILE B 230 THR B 235 1 N ILE B 230 O VAL B 6 SHEET 4 E 6 ARG B 291 HIS B 296 1 N ARG B 291 O PHE B 231 SHEET 5 E 6 THR B 310 LEU B 313 -1 N VAL B 312 O ALA B 292 SHEET 6 E 6 GLU B 254 LYS B 256 1 N VAL B 255 O GLN B 311 SHEET 1 F 2 VAL B 110 THR B 112 0 SHEET 2 F 2 ILE B 188 ILE B 190 1 N ILE B 188 O VAL B 111 SHEET 1 G 3 GLN B 116 ILE B 118 0 SHEET 2 G 3 VAL B 197 GLU B 202 1 N VAL B 197 O THR B 117 SHEET 3 G 3 GLU B 205 GLY B 208 -1 N LYS B 207 O ILE B 200 SHEET 1 H 3 LYS B 131 VAL B 133 0 SHEET 2 H 3 TRP B 161 VAL B 165 -1 N VAL B 165 O LYS B 131 SHEET 3 H 3 ILE B 152 GLU B 155 -1 N LYS B 154 O ARG B 162 LINK O2A ADP A 315 MG MG A 316 1555 1555 2.30 LINK O3B ADP A 315 MG MG A 316 1555 1555 2.45 LINK MG MG A 316 O HOH A2342 1555 1555 2.13 LINK MG MG A 316 O HOH A2344 1555 1555 2.37 LINK MG MG A 316 O HOH A2389 1555 1555 2.38 LINK MG MG A 316 O HOH A2391 1555 1555 2.47 LINK O3B ADP B 315 MG MG B 316 1555 1555 2.49 LINK O1A ADP B 315 MG MG B 316 1555 1555 2.20 LINK MG MG B 316 O HOH B2286 1555 1555 2.46 LINK MG MG B 316 O HOH B2288 1555 1555 2.50 LINK MG MG B 316 O HOH B2320 1555 1555 2.51 LINK MG MG B 316 O HOH B2323 1555 1555 2.42 SITE 1 AC1 5 ADP A 315 HOH A2342 HOH A2344 HOH A2389 SITE 2 AC1 5 HOH A2391 SITE 1 AC2 5 ADP B 315 HOH B2286 HOH B2288 HOH B2320 SITE 2 AC2 5 HOH B2323 SITE 1 AC3 24 GLY A 10 GLY A 11 LYS A 215 THR A 235 SITE 2 AC3 24 ASP A 236 VAL A 237 ALA A 241 TYR A 244 SITE 3 AC3 24 HIS A 268 PHE A 269 LYS A 270 SER A 273 SITE 4 AC3 24 MET A 274 LYS A 277 MG A 316 HOH A2380 SITE 5 AC3 24 HOH A2381 HOH A2382 HOH A2383 HOH A2384 SITE 6 AC3 24 HOH A2385 HOH A2386 HOH A2388 HOH A2390 SITE 1 AC4 26 GLY B 10 GLY B 11 LYS B 215 THR B 235 SITE 2 AC4 26 ASP B 236 GLY B 239 ALA B 241 TYR B 244 SITE 3 AC4 26 HIS B 268 PHE B 269 LYS B 270 SER B 273 SITE 4 AC4 26 MET B 274 LYS B 277 MG B 316 HOH B2248 SITE 5 AC4 26 HOH B2315 HOH B2316 HOH B2317 HOH B2318 SITE 6 AC4 26 HOH B2319 HOH B2320 HOH B2321 HOH B2322 SITE 7 AC4 26 HOH B2324 HOH B2325 CRYST1 55.400 91.700 133.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007474 0.00000 MTRIX1 1 0.958996 -0.047676 0.279105 -7.73523 1 MTRIX2 1 -0.045924 -0.998832 -0.012663 70.02999 1 MTRIX3 1 0.279287 -0.000725 -0.960184 66.25964 1