HEADER TRANSFERASE 23-MAY-00 1E2K TITLE KINETICS AND CRYSTAL STRUCTURE OF THE WILD-TYPE AND THE ENGINEERED TITLE 2 Y101F MUTANT OF HERPES SIMPLEX VIRUS TYPE 1 THYMIDINE KINASE TITLE 3 INTERACTING WITH (NORTH)-METHANOCARBA-THYMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERPES SIMPLEX VIRUS (TYPE 1/ STRAIN 17); SOURCE 3 ORGANISM_TAXID: 10299; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, THYMIDINE KINASE, ANTIVIRAL DRUG, ENZYME-PRODRUG GENE KEYWDS 2 THERAPY, SUGAR RING PUCKER EXPDTA X-RAY DIFFRACTION AUTHOR J.VOGT,L.SCAPOZZA,G.E.SCHULZ REVDAT 4 06-DEC-23 1E2K 1 REMARK REVDAT 3 24-JUL-19 1E2K 1 REMARK REVDAT 2 24-FEB-09 1E2K 1 VERSN REVDAT 1 19-AUG-00 1E2K 0 JRNL AUTH A.PROTA,J.VOGT,B.PILGER,R.PEROZZO,C.WURTH,V.MARQUEZ,P.RUSS, JRNL AUTH 2 G.E.SCHULZ,G.FOLKERS,L.SCAPOZZA JRNL TITL KINETICS AND CRYSTAL STRUCTURE OF THE WILD-TYPE AND THE JRNL TITL 2 ENGINEERED Y101F MUTANT OF HERPES SIMPLEX VIRUS TYPE 1 JRNL TITL 3 THYMIDINE KINASE INTERACTING WITH JRNL TITL 4 (NORTH)-METHANOCARBA-THYMIDINE JRNL REF BIOCHEMISTRY V. 39 9597 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10924157 JRNL DOI 10.1021/BI000668Q REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.WILD,T.BOHNER,A.AUBRY,G.FOLKERS,G.E.SCHULZ REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF THYMIDINE KINASE FROM REMARK 1 TITL 2 HERPES SIMPLEX VIRUS TYPE 1 REMARK 1 REF FEBS LETT. V. 368 289 1995 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 7628623 REMARK 1 DOI 10.1016/0014-5793(95)00680-8 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.G.BROWN,R.VISSE,G.SANDHU,A.DAVIES,P.J.RIZKALLAH,C.MELITZ, REMARK 1 AUTH 2 W.C.SUMMERS,M.R.SANDERSON REMARK 1 TITL CRYSTAL STRUCTURES OF THE THYMIDINE KINASE FROM HERPES REMARK 1 TITL 2 SIMPLEX VIRUS TYPE-1 IN COMPLEX WITH DEOXYTHYMIDINE AND REMARK 1 TITL 3 GANCICLOVIR REMARK 1 REF NAT.STRUCT.BIOL. V. 2 876 1995 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 7552712 REMARK 1 DOI 10.1038/NSB1095-876 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 79549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3978 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.300 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.017 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.025 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1E2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1290004076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8468 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : 0.58000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1VTK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, HEPES, DTT, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.10000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.85000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.10000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.85000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE STRONG CRYSTAL PACKING GENERATED USING X REMARK 300 , 1-Y, -Z GIVESCHAIN A TO CHAIN A (SYMMETRY REMARK 300 RELATED) CONTACTS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ARG A 75 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 HIS A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 ALA A 375 REMARK 465 ASN A 376 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 GLN B 221 REMARK 465 ARG B 222 REMARK 465 PRO B 223 REMARK 465 GLY B 224 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 ALA B 375 REMARK 465 ASN B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 265 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 51 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 132 CB - CG - CD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 TYR A 132 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 TYR A 172 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR A 177 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 212 CG - CD - NE ANGL. DEV. = 25.4 DEGREES REMARK 500 ARG A 212 CD - NE - CZ ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 222 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 236 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 237 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 318 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 320 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 320 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 CYS A 336 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B 51 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR B 80 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR B 80 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR B 87 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR B 87 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ALA B 98 CB - CA - C ANGL. DEV. = 9.7 DEGREES REMARK 500 TYR B 132 CB - CG - CD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 TYR B 132 CB - CG - CD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 163 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 212 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG B 212 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 236 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 237 CD - NE - CZ ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG B 237 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR B 239 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 247 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 256 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 256 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 281 CD - NE - CZ ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG B 281 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 281 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 PHE B 289 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 318 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP B 328 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP B 328 CB - CG - OD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ASP B 338 CA - CB - CG ANGL. DEV. = 20.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 90 -51.95 -132.73 REMARK 500 ARG A 163 158.40 82.88 REMARK 500 LEU A 170 -52.33 -142.36 REMARK 500 SER A 263 -36.17 -132.15 REMARK 500 VAL B 90 -53.82 -131.11 REMARK 500 ARG B 163 154.84 85.32 REMARK 500 LEU B 170 -55.64 -136.20 REMARK 500 LEU B 208 113.92 -164.99 REMARK 500 ALA B 218 72.58 -67.39 REMARK 500 SER B 263 99.66 -16.49 REMARK 500 THR B 265 -157.02 -143.69 REMARK 500 ASN B 277 26.95 -146.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2084 DISTANCE = 6.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMC A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMC B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KIM RELATED DB: PDB REMARK 900 RELATED ID: 1VTK RELATED DB: PDB REMARK 900 RELATED ID: 2VTK RELATED DB: PDB REMARK 900 RELATED ID: 3VTK RELATED DB: PDB REMARK 900 RELATED ID: 1KI2 RELATED DB: PDB REMARK 900 RELATED ID: 1KI4 RELATED DB: PDB REMARK 900 RELATED ID: 1KI5 RELATED DB: PDB REMARK 900 RELATED ID: 1KI6 RELATED DB: PDB REMARK 900 RELATED ID: 1KI7 RELATED DB: PDB REMARK 900 RELATED ID: 1KI8 RELATED DB: PDB REMARK 900 RELATED ID: 1E2J RELATED DB: PDB REMARK 900 RELATED ID: 1E2H RELATED DB: PDB REMARK 900 RELATED ID: 1E2I RELATED DB: PDB REMARK 900 RELATED ID: 1E2L RELATED DB: PDB REMARK 900 RELATED ID: 1E2M RELATED DB: PDB REMARK 900 RELATED ID: 1E2N RELATED DB: PDB REMARK 900 RELATED ID: 1E2P RELATED DB: PDB DBREF 1E2K A 46 376 UNP P03176 KITH_HSV11 46 376 DBREF 1E2K B 46 376 UNP P03176 KITH_HSV11 46 376 SEQRES 1 A 331 MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS SEQRES 2 A 331 GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA SEQRES 3 A 331 LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO SEQRES 4 A 331 MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE SEQRES 5 A 331 ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY SEQRES 6 A 331 GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER SEQRES 7 A 331 ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP SEQRES 8 A 331 ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SEQRES 9 A 331 SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP SEQRES 10 A 331 ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA SEQRES 11 A 331 ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU SEQRES 12 A 331 ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR SEQRES 13 A 331 ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE SEQRES 14 A 331 ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU SEQRES 15 A 331 ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY SEQRES 16 A 331 LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SEQRES 17 A 331 SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA SEQRES 18 A 331 VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY SEQRES 19 A 331 PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE SEQRES 20 A 331 ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR SEQRES 21 A 331 ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG SEQRES 22 A 331 LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SEQRES 23 A 331 SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SEQRES 24 A 331 SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER SEQRES 25 A 331 ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG SEQRES 26 A 331 GLU MET GLY GLU ALA ASN SEQRES 1 B 331 MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS SEQRES 2 B 331 GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA SEQRES 3 B 331 LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO SEQRES 4 B 331 MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE SEQRES 5 B 331 ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY SEQRES 6 B 331 GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER SEQRES 7 B 331 ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP SEQRES 8 B 331 ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SEQRES 9 B 331 SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP SEQRES 10 B 331 ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA SEQRES 11 B 331 ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU SEQRES 12 B 331 ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR SEQRES 13 B 331 ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE SEQRES 14 B 331 ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU SEQRES 15 B 331 ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY SEQRES 16 B 331 LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SEQRES 17 B 331 SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA SEQRES 18 B 331 VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY SEQRES 19 B 331 PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE SEQRES 20 B 331 ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR SEQRES 21 B 331 ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG SEQRES 22 B 331 LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SEQRES 23 B 331 SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SEQRES 24 B 331 SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER SEQRES 25 B 331 ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG SEQRES 26 B 331 GLU MET GLY GLU ALA ASN HET SO4 A 400 5 HET TMC A 500 18 HET SO4 B 400 5 HET TMC B 500 18 HETNAM SO4 SULFATE ION HETNAM TMC 1-[4-HYDROXY-5-(HYDROXYMETHYL)BICYCLO[3.1.0]HEX-2-YL]- HETNAM 2 TMC 5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE HETSYN TMC (N)-METHANOCARBA-THYMIDINE FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 TMC 2(C12 H16 N2 O4) FORMUL 7 HOH *364(H2 O) HELIX 1 1 GLY A 61 VAL A 70 1 10 HELIX 2 2 PRO A 84 VAL A 90 1 7 HELIX 3 3 GLU A 95 GLN A 109 1 15 HELIX 4 4 SER A 113 ALA A 140 1 28 HELIX 5 5 HIS A 164 LEU A 170 1 7 HELIX 6 6 LEU A 170 MET A 179 1 10 HELIX 7 7 THR A 183 LEU A 193 1 11 HELIX 8 8 PRO A 209 ARG A 220 1 12 HELIX 9 9 ASP A 228 CYS A 251 1 24 HELIX 10 10 SER A 254 TRP A 259 1 6 HELIX 11 11 GLY A 260 SER A 263 5 4 HELIX 12 12 HIS A 283 THR A 287 5 5 HELIX 13 13 THR A 287 ARG A 293 5 7 HELIX 14 14 ALA A 294 LEU A 297 5 4 HELIX 15 15 TYR A 305 SER A 321 1 17 HELIX 16 16 SER A 332 THR A 344 1 13 HELIX 17 17 SER A 345 MET A 347 5 3 HELIX 18 18 GLY A 356 GLY A 373 1 18 HELIX 19 19 GLY B 61 GLY B 73 1 13 HELIX 20 20 PRO B 84 VAL B 90 1 7 HELIX 21 21 GLU B 95 GLN B 109 1 15 HELIX 22 22 SER B 113 ALA B 140 1 28 HELIX 23 23 HIS B 164 LEU B 170 1 7 HELIX 24 24 LEU B 170 MET B 179 1 10 HELIX 25 25 THR B 183 LEU B 193 1 11 HELIX 26 26 PRO B 209 ALA B 218 1 10 HELIX 27 27 ASP B 228 CYS B 251 1 24 HELIX 28 28 SER B 254 TRP B 259 1 6 HELIX 29 29 GLY B 260 LEU B 262 5 3 HELIX 30 30 HIS B 283 THR B 287 5 5 HELIX 31 31 THR B 287 ARG B 293 5 7 HELIX 32 32 ALA B 294 LEU B 297 5 4 HELIX 33 33 TYR B 305 SER B 321 1 17 HELIX 34 34 SER B 332 THR B 344 1 13 HELIX 35 35 SER B 345 MET B 347 5 3 HELIX 36 36 GLY B 356 GLY B 373 1 18 SHEET 1 A 5 HIS A 323 ASP A 328 0 SHEET 2 A 5 ASN A 202 ALA A 207 1 N ILE A 203 O HIS A 323 SHEET 3 A 5 LEU A 49 ILE A 54 1 N TYR A 53 O ASN A 202 SHEET 4 A 5 LEU A 157 ASP A 162 1 N LEU A 157 O LEU A 50 SHEET 5 A 5 ILE A 78 VAL A 81 1 N VAL A 79 O THR A 158 SHEET 1 B 5 HIS B 323 ASP B 328 0 SHEET 2 B 5 ASN B 202 ALA B 207 1 N ILE B 203 O HIS B 323 SHEET 3 B 5 LEU B 49 ILE B 54 1 N TYR B 53 O ASN B 202 SHEET 4 B 5 LEU B 157 ASP B 162 1 N LEU B 157 O LEU B 50 SHEET 5 B 5 ILE B 78 VAL B 81 1 N VAL B 79 O THR B 158 SITE 1 AC1 10 HIS A 58 GLY A 59 MET A 60 GLY A 61 SITE 2 AC1 10 LYS A 62 THR A 63 ARG A 220 ARG A 222 SITE 3 AC1 10 HOH A2005 HOH A2179 SITE 1 AC2 9 HIS B 58 GLY B 59 MET B 60 GLY B 61 SITE 2 AC2 9 LYS B 62 THR B 63 HOH B2074 HOH B2181 SITE 3 AC2 9 HOH B2182 SITE 1 AC3 18 HIS A 58 GLU A 83 TRP A 88 ILE A 97 SITE 2 AC3 18 ILE A 100 TYR A 101 GLN A 125 MET A 128 SITE 3 AC3 18 TYR A 132 ARG A 163 ALA A 168 TYR A 172 SITE 4 AC3 18 ARG A 222 HOH A2011 HOH A2028 HOH A2178 SITE 5 AC3 18 HOH A2179 HOH A2180 SITE 1 AC4 16 HIS B 58 GLU B 83 ILE B 97 ILE B 100 SITE 2 AC4 16 TYR B 101 GLN B 125 MET B 128 TYR B 132 SITE 3 AC4 16 ARG B 163 ALA B 168 TYR B 172 GLU B 225 SITE 4 AC4 16 HOH B2022 HOH B2074 HOH B2183 HOH B2184 CRYST1 114.000 117.700 108.200 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009242 0.00000 MTRIX1 1 -0.925360 -0.324100 -0.196630 74.95271 1 MTRIX2 1 -0.325390 0.412980 0.850630 23.26896 1 MTRIX3 1 -0.194480 0.851120 -0.487610 -10.05367 1