HEADER LIGASE 03-JUL-00 1E4E TITLE D-ALANYL-D-LACATE LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D-ALANINE--D-LACTATE LIGASE, VANA LIGASE; COMPND 5 EC: 6.1.2.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: VANCOMYCIN/TEICOPLANIN A-TYPE RESISTANCE PROTEIN VANA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: D-ALANINE--D-LACTATE LIGASE, VANA LIGASE; COMPND 11 EC: 6.1.2.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM; SOURCE 3 ORGANISM_TAXID: 1352; SOURCE 4 STRAIN: BM41417; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 GENE: VANA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM; SOURCE 11 ORGANISM_TAXID: 1352; SOURCE 12 STRAIN: BM41417; SOURCE 13 CELLULAR_LOCATION: CYTOPLASM; SOURCE 14 GENE: VANA; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE, CELL WALL, ANTIBIOTIC RESISTANCE, MEMBRANE, PEPTIDOGLYCAN KEYWDS 2 SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR D.I.ROPER REVDAT 7 13-DEC-23 1E4E 1 REMARK LINK REVDAT 6 09-OCT-19 1E4E 1 REMARK REVDAT 5 13-SEP-17 1E4E 1 JRNL REMARK REVDAT 4 21-SEP-11 1E4E 1 COMPND SOURCE KEYWDS REMARK REVDAT 4 2 1 HET HETSYN FORMUL LINK REVDAT 4 3 1 SITE CRYST1 HETATM CONECT REVDAT 4 4 1 MASTER VERSN REVDAT 3 24-FEB-09 1E4E 1 VERSN REVDAT 2 05-FEB-02 1E4E 1 COMPND REVDAT 1 28-JUN-01 1E4E 0 JRNL AUTH D.I.ROPER,T.HUYTON,A.VAGIN,G.DODSON JRNL TITL THE MOLECULAR BASIS OF VANCOMYCIN RESISTANCE IN CLINICALLY JRNL TITL 2 RELEVANT ENTEROCOCCI: CRYSTAL STRUCTURE OF JRNL TITL 3 D-ALANYL-D-LACTATE LIGASE (VANA). JRNL REF PROC. NATL. ACAD. SCI. V. 97 8921 2000 JRNL REF 2 U.S.A. JRNL REFN ISSN 0027-8424 JRNL PMID 10908650 JRNL DOI 10.1073/PNAS.150116497 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 32814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1664 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5210 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 185 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : -1.30000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.390 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.290 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.191 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.028 ; 0.021 REMARK 3 ANGLE DISTANCE (A) : 0.490 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.052 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.027 ; 0.030 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.173 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.204 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.308 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.225 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.000; NULL REMARK 3 PLANAR (DEGREES) : 4.500 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 19.600; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 28.600; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.033 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.141 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.605 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.874 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1E4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1290005114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32814 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1IOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.21950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.21950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.60200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 112.67950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.60200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 112.67950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.21950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.60200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 112.67950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.21950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.60200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 112.67950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -282.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 123.20400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.21950 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 343 REMARK 465 MET B 1 REMARK 465 LYS B 342 REMARK 465 GLY B 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 ASN A 61 CG OD1 ND2 REMARK 470 VAL A 276 CG1 CG2 REMARK 470 THR A 282 OG1 CG2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 VAL B 276 CG1 CG2 REMARK 470 THR B 282 OG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 208 CB CG CD OE1 NE2 REMARK 480 GLU B 58 CB REMARK 480 GLU B 62 CB CG CD OE1 OE2 REMARK 480 LYS B 81 CD CE NZ REMARK 480 LYS B 82 CD CE NZ REMARK 480 HIS B 84 CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS B 155 CG CD CE NZ REMARK 480 ARG B 158 CD NE CZ NH1 NH2 REMARK 480 ARG B 298 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 51 N TYR A 65 1.77 REMARK 500 OE1 GLU B 26 O2 GOL B 1347 1.83 REMARK 500 O4 SO4 A 1344 O HOH B 3009 1.92 REMARK 500 NH2 ARG B 271 O GLY B 299 2.02 REMARK 500 O1 SO4 A 1344 O HOH B 3010 2.03 REMARK 500 O HOH A 2048 O HOH A 2050 2.10 REMARK 500 O1 SO4 A 1344 O HOH B 3009 2.10 REMARK 500 NZ LYS B 50 OE2 GLU B 60 2.11 REMARK 500 NH2 ARG A 271 O GLY A 299 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O CYS A 64 O2 GOL A 990 6555 1.83 REMARK 500 CA TYR A 65 C1 GOL A 990 6555 1.92 REMARK 500 C CYS A 64 O2 GOL A 990 6555 1.96 REMARK 500 O CYS A 64 C2 GOL A 990 6555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 64 CB CYS A 64 SG -0.121 REMARK 500 GLN A 208 CA GLN A 208 CB -0.376 REMARK 500 GLU A 250 CD GLU A 250 OE1 0.119 REMARK 500 TYR A 280 CZ TYR A 280 CE2 0.089 REMARK 500 GLU B 58 CA GLU B 58 CB -0.160 REMARK 500 GLU B 62 CA GLU B 62 CB -0.299 REMARK 500 LYS B 82 CG LYS B 82 CD -0.253 REMARK 500 HIS B 84 CA HIS B 84 CB 0.361 REMARK 500 LYS B 155 CB LYS B 155 CG -0.413 REMARK 500 ARG B 158 CG ARG B 158 CD 0.153 REMARK 500 LYS B 183 CE LYS B 183 NZ 0.180 REMARK 500 TYR B 192 CG TYR B 192 CD1 -0.079 REMARK 500 GLU B 195 CG GLU B 195 CD 0.090 REMARK 500 GLN B 199 CG GLN B 199 CD 0.139 REMARK 500 VAL B 219 CB VAL B 219 CG2 0.131 REMARK 500 SER B 223 CB SER B 223 OG 0.088 REMARK 500 GLU B 248 CD GLU B 248 OE1 0.066 REMARK 500 GLU B 305 CD GLU B 305 OE2 -0.104 REMARK 500 VAL B 306 CB VAL B 306 CG2 0.176 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 64 CA - CB - SG ANGL. DEV. = -16.0 DEGREES REMARK 500 TYR A 65 N - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ILE A 129 CG1 - CB - CG2 ANGL. DEV. = -15.3 DEGREES REMARK 500 LEU A 135 CB - CG - CD2 ANGL. DEV. = -11.3 DEGREES REMARK 500 LYS A 141 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 174 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 191 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 GLN A 208 N - CA - CB ANGL. DEV. = 17.0 DEGREES REMARK 500 GLN A 208 CA - CB - CG ANGL. DEV. = 19.9 DEGREES REMARK 500 GLN A 208 CG - CD - OE1 ANGL. DEV. = 13.8 DEGREES REMARK 500 GLN A 208 CG - CD - NE2 ANGL. DEV. = -17.6 DEGREES REMARK 500 ARG A 235 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 235 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLU A 250 CG - CD - OE1 ANGL. DEV. = 13.8 DEGREES REMARK 500 VAL A 260 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 286 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 297 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU A 303 CB - CG - CD2 ANGL. DEV. = 12.8 DEGREES REMARK 500 LEU A 309 CA - CB - CG ANGL. DEV. = -20.6 DEGREES REMARK 500 ARG A 320 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 320 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 335 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 335 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LYS A 342 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG B 3 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 3 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B 18 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LYS B 33 CD - CE - NZ ANGL. DEV. = 19.7 DEGREES REMARK 500 GLU B 62 CB - CA - C ANGL. DEV. = 24.2 DEGREES REMARK 500 GLU B 62 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 HIS B 84 N - CA - CB ANGL. DEV. = 28.3 DEGREES REMARK 500 ILE B 129 CG1 - CB - CG2 ANGL. DEV. = -17.4 DEGREES REMARK 500 MET B 131 CB - CG - SD ANGL. DEV. = 22.0 DEGREES REMARK 500 LYS B 155 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP B 157 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 158 CB - CG - CD ANGL. DEV. = 27.2 DEGREES REMARK 500 PRO B 167 N - CD - CG ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG B 174 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 174 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP B 191 CB - CG - OD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG B 235 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 235 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 269 NE - CZ - NH1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG B 269 NE - CZ - NH2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG B 271 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 60 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 62 5.04 -65.69 REMARK 500 HIS A 76 51.64 37.95 REMARK 500 LYS A 101 120.97 -36.30 REMARK 500 SER A 102 -22.41 82.28 REMARK 500 SER A 175 -158.08 -134.54 REMARK 500 SER A 223 102.47 32.99 REMARK 500 ALA A 224 -76.07 96.04 REMARK 500 ALA A 225 8.86 -66.80 REMARK 500 LEU A 226 128.99 -24.89 REMARK 500 ARG A 242 43.97 -154.97 REMARK 500 GLU A 248 68.89 37.23 REMARK 500 ASN A 304 -65.97 -91.10 REMARK 500 SER B 14 137.32 -172.94 REMARK 500 ASN B 83 -126.18 -94.17 REMARK 500 SER B 102 -38.19 91.84 REMARK 500 LYS B 155 -35.51 -37.03 REMARK 500 ASP B 157 161.17 -49.73 REMARK 500 ARG B 158 81.18 -152.71 REMARK 500 SER B 175 -165.87 -129.35 REMARK 500 SER B 177 14.65 57.57 REMARK 500 TYR B 238 166.91 176.87 REMARK 500 ARG B 242 38.98 -159.68 REMARK 500 ASN B 304 -65.40 -107.96 REMARK 500 LEU B 309 79.75 -106.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2071 DISTANCE = 6.24 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PHY A 355 REMARK 610 PHY B 355 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 360 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 305 OE1 REMARK 620 2 GLU A 305 OE2 53.4 REMARK 620 3 ADP A 350 O1B 83.1 94.1 REMARK 620 4 HOH A2095 O 101.1 153.8 87.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 365 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 305 OE2 REMARK 620 2 ADP A 350 O2B 94.7 REMARK 620 3 ADP A 350 O2A 93.7 78.6 REMARK 620 4 PHY A 355 O4P 80.8 91.1 168.0 REMARK 620 5 HOH A2151 O 90.5 155.9 77.6 113.0 REMARK 620 6 HOH A2167 O 175.0 90.2 88.4 97.9 85.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 360 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 305 OE2 REMARK 620 2 GLU B 305 OE1 52.1 REMARK 620 3 ADP B 350 O1B 80.6 75.3 REMARK 620 4 HOH B2094 O 157.1 105.2 97.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 365 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 305 OE2 REMARK 620 2 ADP B 350 O2A 98.6 REMARK 620 3 ADP B 350 O2B 92.7 78.8 REMARK 620 4 PHY B 355 O4P 81.4 168.1 89.3 REMARK 620 5 HOH B2150 O 97.7 97.7 169.5 94.1 REMARK 620 6 HOH B2171 O 159.4 98.6 79.8 79.4 91.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHY A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHY B 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1342 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1343 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1343 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1346 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1348 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1349 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1346 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 990 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 996 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1348 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IOW RELATED DB: PDB REMARK 900 COMPLEX OF Y216F D-ALA:D-ALA LIGASE WITH ADP AND A PHOSPHORYL REMARK 900 PHOSPHINATE REMARK 900 RELATED ID: 1IOV RELATED DB: PDB REMARK 900 COMPLEX OF D-ALA:D-ALA LIGASE WITH ADP AND A PHOSPHORYL PHOSPHONATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN A AND CHAIN B DIFFER AT RESIDUE 298 DBREF 1E4E A 1 343 UNP P25051 VANA_ENTFC 1 343 DBREF 1E4E B 1 343 UNP P25051 VANA_ENTFC 1 343 SEQADV 1E4E GLU A 62 UNP P25051 ASP 62 CONFLICT SEQADV 1E4E VAL A 276 UNP P25051 ALA 276 CONFLICT SEQADV 1E4E THR A 282 UNP P25051 ALA 282 CONFLICT SEQADV 1E4E SER A 328 UNP P25051 ALA 328 CONFLICT SEQADV 1E4E GLU B 62 UNP P25051 ASP 62 CONFLICT SEQADV 1E4E VAL B 276 UNP P25051 ALA 276 CONFLICT SEQADV 1E4E THR B 282 UNP P25051 ALA 282 CONFLICT SEQADV 1E4E ARG B 298 UNP P25051 ASN 298 CONFLICT SEQADV 1E4E SER B 328 UNP P25051 ALA 328 CONFLICT SEQRES 1 A 343 MET ASN ARG ILE LYS VAL ALA ILE LEU PHE GLY GLY CYS SEQRES 2 A 343 SER GLU GLU HIS ASP VAL SER VAL LYS SER ALA ILE GLU SEQRES 3 A 343 ILE ALA ALA ASN ILE ASN LYS GLU LYS TYR GLU PRO LEU SEQRES 4 A 343 TYR ILE GLY ILE THR LYS SER GLY VAL TRP LYS MET CYS SEQRES 5 A 343 GLU LYS PRO CYS ALA GLU TRP GLU ASN GLU ASN CYS TYR SEQRES 6 A 343 SER ALA VAL LEU SER PRO ASP LYS LYS MET HIS GLY LEU SEQRES 7 A 343 LEU VAL LYS LYS ASN HIS GLU TYR GLU ILE ASN HIS VAL SEQRES 8 A 343 ASP VAL ALA PHE SER ALA LEU HIS GLY LYS SER GLY GLU SEQRES 9 A 343 ASP GLY SER ILE GLN GLY LEU PHE GLU LEU SER GLY ILE SEQRES 10 A 343 PRO PHE VAL GLY CYS ASP ILE GLN SER SER ALA ILE CYS SEQRES 11 A 343 MET ASP LYS SER LEU THR TYR ILE VAL ALA LYS ASN ALA SEQRES 12 A 343 GLY ILE ALA THR PRO ALA PHE TRP VAL ILE ASN LYS ASP SEQRES 13 A 343 ASP ARG PRO VAL ALA ALA THR PHE THR TYR PRO VAL PHE SEQRES 14 A 343 VAL LYS PRO ALA ARG SER GLY SER SER PHE GLY VAL LYS SEQRES 15 A 343 LYS VAL ASN SER ALA ASP GLU LEU ASP TYR ALA ILE GLU SEQRES 16 A 343 SER ALA ARG GLN TYR ASP SER LYS ILE LEU ILE GLU GLN SEQRES 17 A 343 ALA VAL SER GLY CYS GLU VAL GLY CYS ALA VAL LEU GLY SEQRES 18 A 343 ASN SER ALA ALA LEU VAL VAL GLY GLU VAL ASP GLN ILE SEQRES 19 A 343 ARG LEU GLN TYR GLY ILE PHE ARG ILE HIS GLN GLU VAL SEQRES 20 A 343 GLU PRO GLU LYS GLY SER GLU ASN ALA VAL ILE THR VAL SEQRES 21 A 343 PRO ALA ASP LEU SER ALA GLU GLU ARG GLY ARG ILE GLN SEQRES 22 A 343 GLU THR VAL LYS LYS ILE TYR LYS THR LEU GLY CYS ARG SEQRES 23 A 343 GLY LEU ALA ARG VAL ASP MET PHE LEU GLN ASP ASN GLY SEQRES 24 A 343 ARG ILE VAL LEU ASN GLU VAL ASN THR LEU PRO GLY PHE SEQRES 25 A 343 THR SER TYR SER ARG TYR PRO ARG MET MET ALA ALA ALA SEQRES 26 A 343 GLY ILE SER LEU PRO GLU LEU ILE ASP ARG LEU ILE VAL SEQRES 27 A 343 LEU ALA LEU LYS GLY SEQRES 1 B 343 MET ASN ARG ILE LYS VAL ALA ILE LEU PHE GLY GLY CYS SEQRES 2 B 343 SER GLU GLU HIS ASP VAL SER VAL LYS SER ALA ILE GLU SEQRES 3 B 343 ILE ALA ALA ASN ILE ASN LYS GLU LYS TYR GLU PRO LEU SEQRES 4 B 343 TYR ILE GLY ILE THR LYS SER GLY VAL TRP LYS MET CYS SEQRES 5 B 343 GLU LYS PRO CYS ALA GLU TRP GLU ASN GLU ASN CYS TYR SEQRES 6 B 343 SER ALA VAL LEU SER PRO ASP LYS LYS MET HIS GLY LEU SEQRES 7 B 343 LEU VAL LYS LYS ASN HIS GLU TYR GLU ILE ASN HIS VAL SEQRES 8 B 343 ASP VAL ALA PHE SER ALA LEU HIS GLY LYS SER GLY GLU SEQRES 9 B 343 ASP GLY SER ILE GLN GLY LEU PHE GLU LEU SER GLY ILE SEQRES 10 B 343 PRO PHE VAL GLY CYS ASP ILE GLN SER SER ALA ILE CYS SEQRES 11 B 343 MET ASP LYS SER LEU THR TYR ILE VAL ALA LYS ASN ALA SEQRES 12 B 343 GLY ILE ALA THR PRO ALA PHE TRP VAL ILE ASN LYS ASP SEQRES 13 B 343 ASP ARG PRO VAL ALA ALA THR PHE THR TYR PRO VAL PHE SEQRES 14 B 343 VAL LYS PRO ALA ARG SER GLY SER SER PHE GLY VAL LYS SEQRES 15 B 343 LYS VAL ASN SER ALA ASP GLU LEU ASP TYR ALA ILE GLU SEQRES 16 B 343 SER ALA ARG GLN TYR ASP SER LYS ILE LEU ILE GLU GLN SEQRES 17 B 343 ALA VAL SER GLY CYS GLU VAL GLY CYS ALA VAL LEU GLY SEQRES 18 B 343 ASN SER ALA ALA LEU VAL VAL GLY GLU VAL ASP GLN ILE SEQRES 19 B 343 ARG LEU GLN TYR GLY ILE PHE ARG ILE HIS GLN GLU VAL SEQRES 20 B 343 GLU PRO GLU LYS GLY SER GLU ASN ALA VAL ILE THR VAL SEQRES 21 B 343 PRO ALA ASP LEU SER ALA GLU GLU ARG GLY ARG ILE GLN SEQRES 22 B 343 GLU THR VAL LYS LYS ILE TYR LYS THR LEU GLY CYS ARG SEQRES 23 B 343 GLY LEU ALA ARG VAL ASP MET PHE LEU GLN ASP ARG GLY SEQRES 24 B 343 ARG ILE VAL LEU ASN GLU VAL ASN THR LEU PRO GLY PHE SEQRES 25 B 343 THR SER TYR SER ARG TYR PRO ARG MET MET ALA ALA ALA SEQRES 26 B 343 GLY ILE SER LEU PRO GLU LEU ILE ASP ARG LEU ILE VAL SEQRES 27 B 343 LEU ALA LEU LYS GLY HET ADP A 350 27 HET PHY A 355 14 HET MG A 360 1 HET MG A 365 1 HET SO4 A1343 5 HET SO4 A1344 5 HET GOL A1345 6 HET GOL A1346 6 HET GOL A1347 6 HET GOL A1348 6 HET GOL A1349 6 HET GOL A1350 6 HET GOL A 990 6 HET GOL A 996 6 HET ADP B 350 27 HET PHY B 355 14 HET MG B 360 1 HET MG B 365 1 HET SO4 B1342 5 HET GOL B1343 6 HET GOL B1344 6 HET GOL B1345 6 HET GOL B1346 6 HET GOL B1347 6 HET GOL B1348 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PHY 1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC HETNAM 2 PHY ACID HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 PHY 2(C6 H15 N O7 P2) FORMUL 5 MG 4(MG 2+) FORMUL 7 SO4 3(O4 S 2-) FORMUL 9 GOL 14(C3 H8 O3) FORMUL 28 HOH *355(H2 O) HELIX 1 1 GLU A 16 ILE A 31 1 16 HELIX 2 2 GLY A 106 GLY A 116 1 11 HELIX 3 3 ASP A 123 ASP A 132 1 10 HELIX 4 4 ASP A 132 ALA A 143 1 12 HELIX 5 5 VAL A 160 PHE A 164 5 5 HELIX 6 6 SER A 186 ASP A 188 5 3 HELIX 7 7 GLU A 189 ARG A 198 1 10 HELIX 8 8 ARG A 242 GLU A 246 5 5 HELIX 9 9 GLU A 248 GLY A 252 5 5 HELIX 10 10 SER A 265 LEU A 283 1 19 HELIX 11 11 SER A 316 ALA A 325 1 10 HELIX 12 12 SER A 328 LYS A 342 1 15 HELIX 13 13 GLU B 16 ALA B 29 1 14 HELIX 14 14 GLY B 106 GLY B 116 1 11 HELIX 15 15 ASP B 123 ASP B 132 1 10 HELIX 16 16 ASP B 132 ALA B 143 1 12 HELIX 17 17 VAL B 160 PHE B 164 5 5 HELIX 18 18 SER B 186 ASP B 188 5 3 HELIX 19 19 GLU B 189 ARG B 198 1 10 HELIX 20 20 ARG B 242 GLU B 246 5 5 HELIX 21 21 GLU B 248 GLY B 252 5 5 HELIX 22 22 SER B 265 LEU B 283 1 19 HELIX 23 23 SER B 316 ALA B 325 1 10 HELIX 24 24 SER B 328 LEU B 341 1 14 SHEET 1 A 4 VAL A 93 SER A 96 0 SHEET 2 A 4 ILE A 4 GLY A 11 1 N ALA A 7 O VAL A 93 SHEET 3 A 4 TYR A 36 ILE A 43 1 N GLU A 37 O ILE A 4 SHEET 4 A 4 TRP A 49 CYS A 52 -1 N CYS A 52 O TYR A 40 SHEET 1 B 3 ALA A 67 LEU A 69 0 SHEET 2 B 3 GLY A 77 LYS A 82 -1 N LEU A 79 O VAL A 68 SHEET 3 B 3 GLU A 85 HIS A 90 -1 N ASN A 89 O LEU A 78 SHEET 1 C 4 PHE A 150 ILE A 153 0 SHEET 2 C 4 ILE A 204 GLN A 208 -1 N ILE A 206 O TRP A 151 SHEET 3 C 4 VAL A 168 PRO A 172 -1 N LYS A 171 O LEU A 205 SHEET 4 C 4 LYS A 182 VAL A 184 -1 N VAL A 184 O VAL A 168 SHEET 1 D 5 ALA A 256 ILE A 258 0 SHEET 2 D 5 ASP A 232 LEU A 236 -1 N ARG A 235 O VAL A 257 SHEET 3 D 5 CYS A 213 ASN A 222 -1 N GLY A 216 O ASP A 232 SHEET 4 D 5 ARG A 286 LEU A 295 -1 N LEU A 295 O CYS A 213 SHEET 5 D 5 ILE A 301 ASN A 307 -1 N ASN A 307 O ARG A 290 SHEET 1 E 4 VAL B 93 SER B 96 0 SHEET 2 E 4 ILE B 4 GLY B 11 1 N ALA B 7 O VAL B 93 SHEET 3 E 4 TYR B 36 ILE B 43 1 N GLU B 37 O ILE B 4 SHEET 4 E 4 TRP B 49 CYS B 52 -1 N CYS B 52 O TYR B 40 SHEET 1 F 3 ALA B 67 LEU B 69 0 SHEET 2 F 3 GLY B 77 LYS B 81 -1 N LEU B 79 O VAL B 68 SHEET 3 F 3 TYR B 86 HIS B 90 -1 N ASN B 89 O LEU B 78 SHEET 1 G 4 PHE B 150 ILE B 153 0 SHEET 2 G 4 ILE B 204 GLN B 208 -1 N ILE B 206 O TRP B 151 SHEET 3 G 4 VAL B 168 PRO B 172 -1 N LYS B 171 O LEU B 205 SHEET 4 G 4 LYS B 182 VAL B 184 -1 N VAL B 184 O VAL B 168 SHEET 1 H 5 ALA B 256 THR B 259 0 SHEET 2 H 5 ASP B 232 LEU B 236 -1 N ARG B 235 O VAL B 257 SHEET 3 H 5 CYS B 213 GLY B 221 -1 N GLY B 216 O ASP B 232 SHEET 4 H 5 GLY B 287 LEU B 295 -1 N LEU B 295 O CYS B 213 SHEET 5 H 5 ILE B 301 ASN B 307 -1 N ASN B 307 O ARG B 290 SSBOND 1 CYS A 52 CYS A 64 1555 1555 2.07 SSBOND 2 CYS B 52 CYS B 64 1555 1555 2.01 LINK OE1 GLU A 305 MG MG A 360 1555 1555 2.38 LINK OE2 GLU A 305 MG MG A 360 1555 1555 2.33 LINK OE2 GLU A 305 MG MG A 365 1555 1555 2.30 LINK O1B ADP A 350 MG MG A 360 1555 1555 2.10 LINK O2B ADP A 350 MG MG A 365 1555 1555 2.02 LINK O2A ADP A 350 MG MG A 365 1555 1555 2.26 LINK O4P PHY A 355 MG MG A 365 1555 1555 1.89 LINK MG MG A 360 O HOH A2095 1555 1555 2.15 LINK MG MG A 365 O HOH A2151 1555 1555 2.18 LINK MG MG A 365 O HOH A2167 1555 1555 2.20 LINK OE2 GLU B 305 MG MG B 360 1555 1555 2.35 LINK OE1 GLU B 305 MG MG B 360 1555 1555 2.24 LINK OE2 GLU B 305 MG MG B 365 1555 1555 2.24 LINK O1B ADP B 350 MG MG B 360 1555 1555 2.10 LINK O2A ADP B 350 MG MG B 365 1555 1555 2.11 LINK O2B ADP B 350 MG MG B 365 1555 1555 2.13 LINK O4P PHY B 355 MG MG B 365 1555 1555 2.38 LINK MG MG B 360 O HOH B2094 1555 1555 2.30 LINK MG MG B 365 O HOH B2150 1555 1555 1.93 LINK MG MG B 365 O HOH B2171 1555 1555 2.16 CISPEP 1 TYR A 166 PRO A 167 0 3.42 CISPEP 2 VAL A 260 PRO A 261 0 -5.70 CISPEP 3 TYR B 166 PRO B 167 0 -3.46 CISPEP 4 VAL B 260 PRO B 261 0 -3.61 SITE 1 AC1 25 LYS A 133 PHE A 169 LYS A 171 SER A 175 SITE 2 AC1 25 GLY A 176 SER A 177 SER A 178 GLU A 207 SITE 3 AC1 25 GLN A 208 VAL A 210 GLU A 214 LEU A 236 SITE 4 AC1 25 ILE A 240 PHE A 241 PHE A 294 ASN A 304 SITE 5 AC1 25 GLU A 305 PHY A 355 MG A 360 MG A 365 SITE 6 AC1 25 HOH A2095 HOH A2112 HOH A2151 HOH A2166 SITE 7 AC1 25 HOH A2167 SITE 1 AC2 19 GLU A 16 SER A 177 PHE A 241 ILE A 243 SITE 2 AC2 19 HIS A 244 ARG A 290 GLU A 305 ASN A 307 SITE 3 AC2 19 GLY A 311 SER A 316 ARG A 317 ADP A 350 SITE 4 AC2 19 MG A 360 MG A 365 HOH A2097 HOH A2154 SITE 5 AC2 19 HOH A2167 HOH A2168 HOH A2169 SITE 1 AC3 5 GLU A 305 ASN A 307 ADP A 350 PHY A 355 SITE 2 AC3 5 HOH A2095 SITE 1 AC4 5 GLU A 305 ADP A 350 PHY A 355 HOH A2151 SITE 2 AC4 5 HOH A2167 SITE 1 AC5 23 LYS B 133 PHE B 169 LYS B 171 GLY B 176 SITE 2 AC5 23 SER B 177 SER B 178 GLU B 207 GLN B 208 SITE 3 AC5 23 ALA B 209 VAL B 210 GLU B 214 LEU B 236 SITE 4 AC5 23 ILE B 240 PHE B 241 PHE B 294 ASN B 304 SITE 5 AC5 23 GLU B 305 PHY B 355 MG B 360 MG B 365 SITE 6 AC5 23 HOH B2150 HOH B2171 HOH B2172 SITE 1 AC6 17 GLU B 16 SER B 177 HIS B 244 ARG B 290 SITE 2 AC6 17 GLU B 305 ASN B 307 GLY B 311 SER B 316 SITE 3 AC6 17 ARG B 317 ADP B 350 MG B 360 MG B 365 SITE 4 AC6 17 HOH B2054 HOH B2096 HOH B2160 HOH B2171 SITE 5 AC6 17 HOH B2173 SITE 1 AC7 6 GLY B 176 GLU B 305 ASN B 307 ADP B 350 SITE 2 AC7 6 PHY B 355 HOH B2094 SITE 1 AC8 5 GLU B 305 ADP B 350 PHY B 355 HOH B2150 SITE 2 AC8 5 HOH B2171 SITE 1 AC9 5 HOH A2143 ARG B 174 LYS B 203 HOH B2103 SITE 2 AC9 5 HOH B3002 SITE 1 BC1 6 ARG A 174 LYS A 203 HOH A2109 HOH A3003 SITE 2 BC1 6 HOH A3004 HOH B2068 SITE 1 BC2 7 ASP A 105 ARG A 174 HOH A3007 HOH A3008 SITE 2 BC2 7 GLN B 125 HOH B3009 HOH B3010 SITE 1 BC3 6 SER A 66 LYS A 81 ARG A 242 GLN A 245 SITE 2 BC3 6 GLU A 246 VAL A 247 SITE 1 BC4 2 SER B 265 ALA B 266 SITE 1 BC5 3 ARG B 3 LYS B 33 GLU B 34 SITE 1 BC6 3 LEU B 339 ALA B 340 LEU B 341 SITE 1 BC7 4 GLU A 62 LYS A 183 TYR A 238 GLY A 239 SITE 1 BC8 4 HIS A 84 SER A 178 ARG A 242 GLN A 245 SITE 1 BC9 2 ASN A 2 ARG A 3 SITE 1 CC1 3 LYS A 155 GLU A 195 HOH A2106 SITE 1 CC2 4 GLU B 37 LEU B 39 MET B 51 ASN B 89 SITE 1 CC3 6 GLU B 26 PHE B 312 THR B 313 SER B 314 SITE 2 CC3 6 LEU B 329 HOH B3011 SITE 1 CC4 5 GLU A 62 ASN A 63 CYS A 64 TYR A 65 SITE 2 CC4 5 SER A 66 SITE 1 CC5 1 LYS A 155 SITE 1 CC6 3 LYS A 5 GLU A 37 ASN A 89 SITE 1 CC7 4 LYS B 50 TYR B 65 HOH B3012 HOH B3013 CRYST1 123.204 225.359 72.439 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013805 0.00000 MTRIX1 1 -0.579830 -0.496660 -0.645860 96.74762 1 MTRIX2 1 -0.475480 -0.437440 0.763260 45.15613 1 MTRIX3 1 -0.661600 0.749650 0.017480 28.34869 1