HEADER GENE REGULATION 12-JUL-00 1E4U TITLE N-TERMINAL RING FINGER DOMAIN OF HUMAN NOT-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR NOT4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RING FINGER DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GENE REGULATION, TRANSCRIPTIONAL CONTROL EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR H.HANZAWA,M.J.DE RUWE,T.K.ALBERT,P.C.VAN DER VLIET,H.T.TIMMERS, AUTHOR 2 R.BOELENS REVDAT 5 15-MAY-24 1E4U 1 REMARK LINK REVDAT 4 24-FEB-09 1E4U 1 VERSN REVDAT 3 25-APR-02 1E4U 1 AUTHOR REVDAT 2 08-MAR-02 1E4U 1 SOURCE REVDAT 1 31-MAR-01 1E4U 0 JRNL AUTH H.HANZAWA,M.J.DE RUWE,T.K.ALBERT,P.C.VAN DER VLIET, JRNL AUTH 2 H.T.TIMMERS,R.BOELENS JRNL TITL THE STRUCTURE OF THE C4C4 RING FINGER OF HUMAN NOT4 REVEALS JRNL TITL 2 FEATURES DISTINCT FROM THOSE OF C3HC4 RING FINGERS JRNL REF J.BIOL.CHEM. V. 276 10185 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11087754 JRNL DOI 10.1074/JBC.M009298200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1E4U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1290005158. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 170MM KCL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 29 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 18 93.73 85.04 REMARK 500 1 GLU A 22 -175.11 -69.24 REMARK 500 1 ASN A 27 36.80 -91.52 REMARK 500 1 PHE A 28 76.68 -101.04 REMARK 500 1 TYR A 35 92.99 -46.38 REMARK 500 1 THR A 47 -75.01 -125.99 REMARK 500 1 ARG A 57 71.77 68.31 REMARK 500 1 GLU A 62 38.45 169.07 REMARK 500 1 ASP A 63 74.27 54.07 REMARK 500 1 ALA A 65 -66.60 -102.32 REMARK 500 1 VAL A 66 -41.32 -147.14 REMARK 500 1 TYR A 67 131.01 76.40 REMARK 500 1 PRO A 69 -70.32 -79.13 REMARK 500 1 LEU A 70 66.42 -170.95 REMARK 500 1 SER A 71 -158.84 -68.51 REMARK 500 1 ARG A 77 -168.30 56.10 REMARK 500 2 SER A 2 147.04 -179.03 REMARK 500 2 ARG A 3 -60.52 -129.63 REMARK 500 2 ASP A 10 71.53 -151.18 REMARK 500 2 CYS A 14 104.88 -37.19 REMARK 500 2 CYS A 17 10.33 -142.35 REMARK 500 2 MET A 18 89.52 57.18 REMARK 500 2 GLU A 22 -159.40 -66.00 REMARK 500 2 THR A 32 52.27 -90.38 REMARK 500 2 TYR A 35 94.49 -43.17 REMARK 500 2 THR A 47 -64.47 -120.69 REMARK 500 2 GLU A 49 -148.73 -70.49 REMARK 500 2 ARG A 57 79.81 69.37 REMARK 500 2 GLU A 62 -76.13 81.41 REMARK 500 2 ALA A 65 -83.12 72.00 REMARK 500 2 VAL A 66 16.57 57.29 REMARK 500 2 TYR A 67 72.06 46.03 REMARK 500 2 LYS A 68 85.41 -167.47 REMARK 500 2 LEU A 70 143.19 -175.44 REMARK 500 2 SER A 71 47.48 -142.70 REMARK 500 2 GLN A 72 105.39 168.78 REMARK 500 2 GLU A 73 -99.19 -112.71 REMARK 500 2 GLU A 74 74.61 45.95 REMARK 500 3 SER A 2 -32.83 179.57 REMARK 500 3 ARG A 3 -72.24 80.41 REMARK 500 3 SER A 4 -56.77 174.97 REMARK 500 3 PRO A 5 -168.43 -77.18 REMARK 500 3 ASP A 6 131.26 -174.15 REMARK 500 3 ALA A 7 -162.23 -109.33 REMARK 500 3 LYS A 8 72.25 52.25 REMARK 500 3 GLU A 9 146.82 76.24 REMARK 500 3 PRO A 15 28.65 -79.87 REMARK 500 3 LEU A 16 -40.62 -135.17 REMARK 500 3 MET A 18 -29.48 85.91 REMARK 500 3 GLU A 19 159.75 -39.55 REMARK 500 REMARK 500 THIS ENTRY HAS 607 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 3 0.26 SIDE CHAIN REMARK 500 1 ARG A 39 0.30 SIDE CHAIN REMARK 500 1 ARG A 44 0.25 SIDE CHAIN REMARK 500 1 ARG A 46 0.28 SIDE CHAIN REMARK 500 1 ARG A 57 0.27 SIDE CHAIN REMARK 500 1 ARG A 77 0.27 SIDE CHAIN REMARK 500 2 ARG A 3 0.21 SIDE CHAIN REMARK 500 2 ARG A 39 0.32 SIDE CHAIN REMARK 500 2 ARG A 44 0.30 SIDE CHAIN REMARK 500 2 ARG A 46 0.23 SIDE CHAIN REMARK 500 2 ARG A 57 0.27 SIDE CHAIN REMARK 500 2 ARG A 77 0.30 SIDE CHAIN REMARK 500 3 ARG A 3 0.31 SIDE CHAIN REMARK 500 3 ARG A 39 0.28 SIDE CHAIN REMARK 500 3 ARG A 44 0.32 SIDE CHAIN REMARK 500 3 ARG A 46 0.26 SIDE CHAIN REMARK 500 3 ARG A 57 0.31 SIDE CHAIN REMARK 500 3 ARG A 77 0.32 SIDE CHAIN REMARK 500 4 ARG A 3 0.27 SIDE CHAIN REMARK 500 4 ARG A 44 0.31 SIDE CHAIN REMARK 500 4 ARG A 46 0.13 SIDE CHAIN REMARK 500 4 ARG A 57 0.25 SIDE CHAIN REMARK 500 4 ARG A 77 0.26 SIDE CHAIN REMARK 500 5 ARG A 3 0.19 SIDE CHAIN REMARK 500 5 ARG A 39 0.27 SIDE CHAIN REMARK 500 5 ARG A 44 0.32 SIDE CHAIN REMARK 500 5 ARG A 46 0.23 SIDE CHAIN REMARK 500 5 ARG A 57 0.27 SIDE CHAIN REMARK 500 5 ARG A 77 0.31 SIDE CHAIN REMARK 500 6 ARG A 3 0.12 SIDE CHAIN REMARK 500 6 ARG A 39 0.27 SIDE CHAIN REMARK 500 6 ARG A 44 0.32 SIDE CHAIN REMARK 500 6 ARG A 46 0.24 SIDE CHAIN REMARK 500 6 ARG A 57 0.32 SIDE CHAIN REMARK 500 7 ARG A 3 0.28 SIDE CHAIN REMARK 500 7 ARG A 39 0.20 SIDE CHAIN REMARK 500 7 ARG A 44 0.22 SIDE CHAIN REMARK 500 7 ARG A 46 0.20 SIDE CHAIN REMARK 500 7 ARG A 57 0.29 SIDE CHAIN REMARK 500 7 ARG A 77 0.26 SIDE CHAIN REMARK 500 8 ARG A 3 0.30 SIDE CHAIN REMARK 500 8 ARG A 39 0.18 SIDE CHAIN REMARK 500 8 ARG A 44 0.08 SIDE CHAIN REMARK 500 8 ARG A 57 0.32 SIDE CHAIN REMARK 500 8 ARG A 77 0.32 SIDE CHAIN REMARK 500 9 ARG A 3 0.23 SIDE CHAIN REMARK 500 9 ARG A 39 0.23 SIDE CHAIN REMARK 500 9 ARG A 44 0.26 SIDE CHAIN REMARK 500 9 ARG A 46 0.23 SIDE CHAIN REMARK 500 9 ARG A 57 0.23 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 171 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 79 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 14 SG REMARK 620 2 CYS A 17 SG 110.4 REMARK 620 3 CYS A 38 SG 112.9 107.3 REMARK 620 4 CYS A 41 SG 109.6 107.8 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 80 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 CYS A 33 SG 107.8 REMARK 620 3 CYS A 53 SG 108.3 110.1 REMARK 620 4 CYS A 56 SG 107.1 112.5 110.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 79 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 80 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4621 RELATED DB: BMRB DBREF 1E4U A 1 78 UNP O95628 O95628 1 78 SEQRES 1 A 78 MET SER ARG SER PRO ASP ALA LYS GLU ASP PRO VAL GLU SEQRES 2 A 78 CYS PRO LEU CYS MET GLU PRO LEU GLU ILE ASP ASP ILE SEQRES 3 A 78 ASN PHE PHE PRO CYS THR CYS GLY TYR GLN ILE CYS ARG SEQRES 4 A 78 PHE CYS TRP HIS ARG ILE ARG THR ASP GLU ASN GLY LEU SEQRES 5 A 78 CYS PRO ALA CYS ARG LYS PRO TYR PRO GLU ASP PRO ALA SEQRES 6 A 78 VAL TYR LYS PRO LEU SER GLN GLU GLU LEU GLN ARG ILE HET ZN A 79 1 HET ZN A 80 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 CYS A 38 ASP A 48 1 11 LINK SG CYS A 14 ZN ZN A 79 1555 1555 2.31 LINK SG CYS A 17 ZN ZN A 79 1555 1555 2.30 LINK SG CYS A 31 ZN ZN A 80 1555 1555 2.29 LINK SG CYS A 33 ZN ZN A 80 1555 1555 2.30 LINK SG CYS A 38 ZN ZN A 79 1555 1555 2.30 LINK SG CYS A 41 ZN ZN A 79 1555 1555 2.31 LINK SG CYS A 53 ZN ZN A 80 1555 1555 2.30 LINK SG CYS A 56 ZN ZN A 80 1555 1555 2.30 SITE 1 AC1 4 CYS A 14 CYS A 17 CYS A 38 CYS A 41 SITE 1 AC2 4 CYS A 31 CYS A 33 CYS A 53 CYS A 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1