HEADER PROTEIN TRANSPORT 20-JUL-00 1E5A TITLE STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW TITLE 2 MODE OF BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PREALBUMIN, ATTR, TBPA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PLASMA KEYWDS PROTEIN TRANSPORT, TRANSPORT(THYROXINE), ENVIRONMENTAL POLLUTANTS EXPDTA X-RAY DIFFRACTION AUTHOR M.GHOSH,I.A.T.M.MEERTS,A.COOK,A.BERGMAN,A.BROUWER,L.N.JOHNSON REVDAT 5 13-DEC-23 1E5A 1 REMARK REVDAT 4 05-JUL-17 1E5A 1 REMARK REVDAT 3 10-AUG-11 1E5A 1 COMPND KEYWDS AUTHOR REMARK REVDAT 3 2 1 HET FORMUL SITE HETATM REVDAT 3 3 1 MASTER VERSN REVDAT 2 24-FEB-09 1E5A 1 VERSN REVDAT 1 29-AUG-00 1E5A 0 JRNL AUTH M.GHOSH,I.A.T.M.MEERTS,A.COOK,A.BERGMAN,A.BROUWER, JRNL AUTH 2 L.N.JOHNSON JRNL TITL STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS JRNL TITL 2 : A NEW MODE OF BINDING JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 1085 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10957627 JRNL DOI 10.1107/S0907444900008568 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.C.F.BLAKE,M.J.GEISOW,S.J.OATLEY,C.RERAT,B.RERAT REMARK 1 TITL STRUCTURE OF PREALBUMIN: SECONDARY,TERTIARY AND QUATERNARY REMARK 1 TITL 2 INTERACTIONS DETERMINED BY FOURIER REFINMENT AT 1.8A. REMARK 1 REF J.MOL.BIOL. V. 88 339 1978 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 671542 REMARK 1 DOI 10.1016/0022-2836(78)90368-6 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.C.F.BLAKE,S.J.OATLEY REMARK 1 TITL PROTEIN-DNA AND PROTEIN-HORMONE INTERACTIONS IN PREALBUMIN : REMARK 1 TITL 2 A MODEL OF THE THYROID HORMONE NUCLEAR RECEPTOR ? REMARK 1 REF NATURE V. 268 115 1977 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 201845 REMARK 1 DOI 10.1038/268115A0 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 0.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3690 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 226 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.400 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : 246.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : 246.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE TRIBROMOPHENOL MOLECULE IS LOCATED REMARK 3 NEAR THE THYROXINE BINDING SITE BUT NOT SYMMETRICALLY ON THE REMARK 3 CRYSTALLOGRAPHIC Z AXIS AS IS THE CASE FOR A SIMILAR COMPOUND REMARK 3 PENTABROMOPHENOL. THERE ARE TWO SYMMETRY EQUIVALENT POSITIONS REMARK 3 ABOUT THE TWO FOLD AXIS, EACH WITH AN OCCUPANCY .5 AT EACH OF REMARK 3 THE BINDING SITES. WATER MOLECULES W91, W306, W336 LOCATED ON REMARK 3 THE SAME SYMMETRY AXIS WERE KEPT FIXED IN POSITION DURING THE REMARK 3 REFINEMENT. RESIDUES 1-9 AND 126-127 OF BOTH THE CHAINS WERE NOT REMARK 3 OBSERVED IN THE ELECTRON DENSITY MAP. REMARK 4 REMARK 4 1E5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1290004950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20818 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 29.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : 0.34500 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1TTA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.40000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS COORDINATE SET COMPRISES TWO CHAINS REMARK 300 REPRESENTING TWO CHEMICALLY EQUIVALENT, BUT REMARK 300 CRYSTALLOGRAPHICALLY DISTINCT, ENTITIES. THE OTHER HALF REMARK 300 OF THE COMPLETE TETRAMER MAY BEGENERATED FROM REMARK 300 THIS DIMER BY THE APPLICATION OF THE CRYSTALLOGRAPHIC REMARK 300 TWO-FOLD AXIS PARALLEL TO Z THROUGH THE ORIGIN OF REMARK 300 THIS COORDINATE SYSTEM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 85.60000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O1 TBP A 999 LIES ON A SPECIAL POSITION. REMARK 375 O1 TBP B 999 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2081 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2024 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2058 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 FUNCTION: THYROID HORMONE-BINDING PROTEIN. PROBABLY TRANSPORTS REMARK 400 THYROXINE FROM THE BLOODSTREAM TO THE BRAIN. REMARK 400 TISSUE SPECIFICITY: MOST ABUNDANT IN THE CHOROID PLEXUS. ALSO REMARK 400 PRESENT IN THE LIVER. REMARK 400 DISEASE: FAMILIAL AMYLOIDOTIC POLYNEUROPATHY (FAP) IS A LATE-ONSET REMARK 400 DISEASE WITH A DOMINANT MODE OF INHERITANCE. PROTEIN FIBRILS FORM REMARK 400 IN MANY TISSUES, AND DEPOSITION AROUND NERVES CAUSES PERIPHERAL REMARK 400 AND AUTONOMIC NEUROPATHY. SYMPTOMS INCLUDE PARALYSIS, CHRONIC REMARK 400 DIARRHEA, AND CARDIOMYOPATHY. MANY SEQUENCE VARIANTS HAVE BEEN REMARK 400 IDENTIFIED IN AMYLOID FIBRILS FROM PATIENTS WITH FAP. SOME FORMS REMARK 400 OF AMYLOID DEPOSITION ARE THE CAUSE OF FAMILIAL AMYLOIDOTIC REMARK 400 CARDIOMYOPATHY (FAC). SOME FORM OF FAP ARE ASSOCIATED WITH CARPAL REMARK 400 TUNNEL SYNDROME (CTS). REMARK 400 DISEASE: IN SENILE SYSTEMIC AMYLOIDOSIS (SSA) MECHANISMS OTHER REMARK 400 THAN VARIATIONS IN THE PRIMARY STRUCTURE OF TTR ARE IMPORTANT FOR REMARK 400 THE FIBRIL FORMATION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2013 O HOH A 2014 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 48 O GLU A 63 4556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 51 CB GLU B 51 CG 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2017 DISTANCE = 5.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBP A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TBP B 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2TRH RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 2TRY RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 2ROX RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH THYROXINE (T4) REMARK 900 RELATED ID: 2ROY RELATED DB: PDB REMARK 900 TRANSTHYRETIN (ALSO CALLED PREALBUMIN) COMPLEX WITH 3',5'-DINITRO-N- REMARK 900 ACETYL-L-THYRONINE REMARK 900 RELATED ID: 1TTR RELATED DB: PDB REMARK 900 TRANSTHYRETIN - V/122/I CARDIOMYOPATHIC MUTANT REMARK 900 RELATED ID: 1TSH RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1E3F RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING REMARK 900 RELATED ID: 1BZD RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1BZE RELATED DB: PDB REMARK 900 TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS REMARK 900 AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION REMARK 900 RELATED ID: 1BZ8 RELATED DB: PDB REMARK 900 TRANSTHYRETIN (DEL VAL122) REMARK 900 RELATED ID: 5TTR RELATED DB: PDB REMARK 900 LEU 55 PRO TRANSTHYRETIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1E4H RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN TRANSTHYRETIN COMPLEXED WITH BROMOPHENOLS: A NEW REMARK 900 MODE OF BINDING REMARK 900 RELATED ID: 2PAB RELATED DB: PDB REMARK 900 RELATED ID: 1THC RELATED DB: PDB REMARK 900 RELATED ID: 1THA RELATED DB: PDB REMARK 900 RELATED ID: 1TLM RELATED DB: PDB REMARK 900 RELATED ID: 1TTA RELATED DB: PDB REMARK 900 RELATED ID: 1TTB RELATED DB: PDB REMARK 900 RELATED ID: 1TTC RELATED DB: PDB REMARK 900 RELATED ID: 1ETA RELATED DB: PDB REMARK 900 RELATED ID: 1ETB RELATED DB: PDB DBREF 1E5A A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1E5A B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 1E5A GLU A 63 UNP P02766 GLN 63 CONFLICT SEQADV 1E5A GLU B 63 UNP P02766 GLN 63 CONFLICT SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU HET TBP A 999 10 HET TBP B 999 10 HETNAM TBP 2,4,6-TRIBROMOPHENOL FORMUL 3 TBP 2(C6 H3 BR3 O) FORMUL 5 HOH *147(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 ASP B 74 LEU B 82 1 9 SHEET 1 A 3 LEU A 12 ASP A 18 0 SHEET 2 A 3 ARG A 104 SER A 112 1 N TYR A 105 O MET A 13 SHEET 3 A 3 SER A 115 THR A 123 -1 N THR A 123 O ARG A 104 SHEET 1 B 4 ALA A 91 ALA A 97 0 SHEET 2 B 4 GLY A 67 ILE A 73 -1 N ILE A 73 O ALA A 91 SHEET 3 B 4 ALA A 29 LYS A 35 -1 N PHE A 33 O LYS A 70 SHEET 4 B 4 TRP A 41 LYS A 48 -1 N GLY A 47 O VAL A 30 SHEET 1 C 3 LEU B 12 ASP B 18 0 SHEET 2 C 3 ARG B 104 SER B 112 1 N TYR B 105 O MET B 13 SHEET 3 C 3 SER B 115 THR B 123 -1 N THR B 123 O ARG B 104 SHEET 1 D 4 ALA B 91 ALA B 97 0 SHEET 2 D 4 GLY B 67 ILE B 73 -1 N ILE B 73 O ALA B 91 SHEET 3 D 4 ALA B 29 LYS B 35 -1 N PHE B 33 O LYS B 70 SHEET 4 D 4 TRP B 41 LYS B 48 -1 N GLY B 47 O VAL B 30 SITE 1 AC1 3 LYS A 15 LEU A 17 ALA A 108 SITE 1 AC2 3 LYS B 15 LEU B 17 ALA B 108 CRYST1 42.800 84.900 64.400 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015528 0.00000 MTRIX1 1 -0.991300 -0.130900 0.014300 84.66700 1 MTRIX2 1 -0.131000 0.991400 -0.003800 5.44500 1 MTRIX3 1 -0.013600 -0.005700 -0.999900 32.65200 1