HEADER LIPOCALIN 28-JUL-00 1E5P TITLE CRYSTAL STRUCTURE OF APHRODISIN, A SEX PHEROMONE FROM FEMALE HAMSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: APHRODISIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESOCRICETUS AURATUS; SOURCE 3 ORGANISM_COMMON: GOLDEN HAMSTER; SOURCE 4 ORGANISM_TAXID: 10036; SOURCE 5 ORGAN: VAGIN; SOURCE 6 GENE: MESOCRICETUS AURATUS APHRODISIN GENE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B834DE3; SOURCE 10 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PQE31; SOURCE 13 EXPRESSION_SYSTEM_GENE: MESOCRICETUS AURATUS APHRODISIN GENE KEYWDS LIPOCALIN, PHEROMONE, HAMSTER EXPDTA X-RAY DIFFRACTION AUTHOR F.VINCENT,K.BROWN,S.SPINELLI,C.CAMBILLAU,M.TEGONI REVDAT 5 16-OCT-24 1E5P 1 REMARK REVDAT 4 13-DEC-23 1E5P 1 REMARK REVDAT 3 18-SEP-19 1E5P 1 JRNL REMARK LINK REVDAT 2 24-FEB-09 1E5P 1 VERSN REVDAT 1 26-JUL-01 1E5P 0 JRNL AUTH F.VINCENT,D.LOBEL,K.BROWN,S.SPINELLI,P.GROTE,H.BREER, JRNL AUTH 2 C.CAMBILLAU,M.TEGONI JRNL TITL CRYSTAL STRUCTURE OF APHRODISIN, A SEX PHEROMONE FROM FEMALE JRNL TITL 2 HAMSTER. JRNL REF J.MOL.BIOL. V. 305 459 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11152604 JRNL DOI 10.1006/JMBI.2000.4241 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 88875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2202 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 703 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.012 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.029 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.036 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.187 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.252 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.122 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.000; NULL REMARK 3 PLANAR (DEGREES) : 3.900 ; 2.000 REMARK 3 STAGGERED (DEGREES) : 15.400; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 25.300; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.829 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.535 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.853 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.960 ; 4.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEVERAL RESIDUES ARE IN ALTERNATE REMARK 3 CONFORMATION, AND ARE PRECEEDED BY A AND B LIKE AMET, BMET. THE REMARK 3 PROTEIN USED TO SOLVE THE STRUCTURE HAS BEEN SELENIATED SO THE REMARK 3 METHIONINES IN THE PDB FILE ARE SELENOMETHIONIES (MSE) SOME REMARK 3 OCCUPANCIES HAVE BEEN SET TO 0 OR LESS THAN 1 BECAUSE OF LACK OF REMARK 3 DENSITY. REMARK 4 REMARK 4 1E5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1290005194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 3.80 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978, 0.9795, 0.9324, 0.933 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89441 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: 1A3Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8K 28%, 150MM AS, 10MM NACL PH REMARK 280 3.8, [P]=2.65MG/NL, PH 3.80, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.46000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 FUNCTION: APHRODISIN, SECRETED IN HAMSTER VAGINAL DISCHARGE, REMARK 400 IT FUNCTIONS AS AN APHRODISIAC PHEROMONE, RELIABLY ELICITING REMARK 400 COPULATORY BEHAVIOR FROM MALE HAMSTER. REMARK 400 SIMILARITY: BELONGS TO THE LIPOCALIN FAMILY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 GLN B 1 REMARK 465 ASP B 2 REMARK 465 PHE B 3 REMARK 465 GLN C 1 REMARK 465 ASP C 2 REMARK 465 PHE C 3 REMARK 465 ALA C 4 REMARK 465 GLN D 1 REMARK 465 ASP D 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 40 CE NZ REMARK 480 ASN A 41 OD1 REMARK 480 LYS A 97 NZ REMARK 480 GLU A 105 OE2 REMARK 480 LYS A 133 NZ REMARK 480 LYS A 134 CD CE NZ REMARK 480 GLU A 138 OE1 OE2 REMARK 480 ASN A 142 ND2 REMARK 480 ALA B 4 N REMARK 480 GLU B 21 CG CD OE1 OE2 REMARK 480 GLU B 25 OE1 REMARK 480 LYS B 40 NZ REMARK 480 ASN B 41 OD1 REMARK 480 GLU B 46 OE1 REMARK 480 GLN B 56 CG CD OE1 NE2 REMARK 480 GLU B 73 OE1 OE2 REMARK 480 ILE B 81 CD1 REMARK 480 ASP B 90 OD1 OD2 REMARK 480 ARG B 101 CD NE NH1 NH2 REMARK 480 GLU B 105 OE1 OE2 REMARK 480 GLU B 132 OE2 REMARK 480 LYS B 134 CD CE NZ REMARK 480 GLU C 5 OE1 OE2 REMARK 480 LYS C 9 NZ REMARK 480 GLU C 21 CG CD OE1 OE2 REMARK 480 ILE C 47 CD1 REMARK 480 THR C 53 CG2 REMARK 480 ASN C 54 CB CG OD1 ND2 REMARK 480 ASN C 55 CG OD1 ND2 REMARK 480 GLN C 56 OE1 REMARK 480 LYS C 59 NZ REMARK 480 TYR C 65 OH REMARK 480 ASP C 90 OD1 REMARK 480 LYS C 97 CD CE NZ REMARK 480 ARG C 101 CD NE CZ NH1 NH2 REMARK 480 GLN C 104 OE1 REMARK 480 LYS C 134 CD CE NZ REMARK 480 GLU C 138 CD OE1 OE2 REMARK 480 GLU C 151 OE1 REMARK 480 GLU D 5 CB CG CD OE1 OE2 REMARK 480 LEU D 6 CD1 CD2 REMARK 480 LYS D 9 CD CE NZ REMARK 480 LYS D 40 NZ REMARK 480 ASN D 41 OD1 ND2 REMARK 480 ASP D 90 OD1 OD2 REMARK 480 LYS D 97 CE NZ REMARK 480 GLU D 105 OE1 REMARK 480 ASN D 123 ND2 REMARK 480 GLU D 132 OE1 REMARK 480 LYS D 133 NZ REMARK 480 LYS D 134 CD CE REMARK 480 GLU D 138 OE1 OE2 REMARK 480 GLU D 151 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS C 42 SG CYS D 42 1.78 REMARK 500 OE1 GLU D 132 O HOH D 2167 1.92 REMARK 500 OE2 GLU D 5 CG2 ILE D 87 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 46 CD GLU B 46 OE1 0.085 REMARK 500 CYS D 42 CB CYS D 42 SG 39.589 REMARK 500 GLU D 151 CB GLU D 151 CG -0.285 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE D 108 CA - CB - CG ANGL. DEV. = 12.9 DEGREES REMARK 500 GLU D 151 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 34 -36.29 -130.34 REMARK 500 PHE A 76 113.20 -167.16 REMARK 500 ARG B 34 -41.11 -131.49 REMARK 500 PHE B 76 115.42 -170.19 REMARK 500 ARG C 34 -41.55 -130.30 REMARK 500 ASN C 54 3.51 84.92 REMARK 500 PHE C 76 119.69 -174.03 REMARK 500 ARG D 34 -40.39 -130.82 REMARK 500 PHE D 76 115.43 -170.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP B 90 11.46 REMARK 500 ASN C 54 14.16 REMARK 500 LEU D 6 12.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2003 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A2004 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A2006 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A2020 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2025 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2027 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A2059 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B2006 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2022 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B2023 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B2026 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B2055 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B2061 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH C2006 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH C2023 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH C2031 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH D2011 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH D2027 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH D2048 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH D2080 DISTANCE = 6.34 ANGSTROMS DBREF 1E5P A 1 151 UNP P09465 APHR_CRICR 17 167 DBREF 1E5P B 1 151 UNP P09465 APHR_CRICR 17 167 DBREF 1E5P C 1 151 UNP P09465 APHR_CRICR 17 167 DBREF 1E5P D 1 151 UNP P09465 APHR_CRICR 17 167 SEQADV 1E5P GLU A 73 UNP P09465 GLN 73 CONFLICT SEQADV 1E5P GLU B 73 UNP P09465 GLN 73 CONFLICT SEQADV 1E5P GLU C 73 UNP P09465 GLN 73 CONFLICT SEQADV 1E5P GLU D 73 UNP P09465 GLN 73 CONFLICT SEQADV 1E5P MSE A 45 UNP P09465 MET 61 MODIFIED RESIDUE SEQADV 1E5P MSE A 99 UNP P09465 MET 115 MODIFIED RESIDUE SEQADV 1E5P MSE A 108 UNP P09465 MET 124 MODIFIED RESIDUE SEQADV 1E5P MSE B 45 UNP P09465 MET 61 MODIFIED RESIDUE SEQADV 1E5P MSE B 99 UNP P09465 MET 115 MODIFIED RESIDUE SEQADV 1E5P MSE B 108 UNP P09465 MET 124 MODIFIED RESIDUE SEQADV 1E5P MSE C 45 UNP P09465 MET 61 MODIFIED RESIDUE SEQADV 1E5P MSE C 99 UNP P09465 MET 115 MODIFIED RESIDUE SEQADV 1E5P MSE C 108 UNP P09465 MET 124 MODIFIED RESIDUE SEQADV 1E5P MSE D 45 UNP P09465 MET 61 MODIFIED RESIDUE SEQADV 1E5P MSE D 99 UNP P09465 MET 115 MODIFIED RESIDUE SEQADV 1E5P MSE D 108 UNP P09465 MET 124 MODIFIED RESIDUE SEQRES 1 A 151 GLN ASP PHE ALA GLU LEU GLN GLY LYS TRP TYR THR ILE SEQRES 2 A 151 VAL ILE ALA ALA ASP ASN LEU GLU LYS ILE GLU GLU GLY SEQRES 3 A 151 GLY PRO LEU ARG PHE TYR PHE ARG HIS ILE ASP CYS TYR SEQRES 4 A 151 LYS ASN CYS SER GLU MSE GLU ILE THR PHE TYR VAL ILE SEQRES 5 A 151 THR ASN ASN GLN CYS SER LYS THR THR VAL ILE GLY TYR SEQRES 6 A 151 LEU LYS GLY ASN GLY THR TYR GLU THR GLN PHE GLU GLY SEQRES 7 A 151 ASN ASN ILE PHE GLN PRO LEU TYR ILE THR SER ASP LYS SEQRES 8 A 151 ILE PHE PHE THR ASN LYS ASN MSE ASP ARG ALA GLY GLN SEQRES 9 A 151 GLU THR ASN MSE ILE VAL VAL ALA GLY LYS GLY ASN ALA SEQRES 10 A 151 LEU THR PRO GLU GLU ASN GLU ILE LEU VAL GLN PHE ALA SEQRES 11 A 151 HIS GLU LYS LYS ILE PRO VAL GLU ASN ILE LEU ASN ILE SEQRES 12 A 151 LEU ALA THR ASP THR CYS PRO GLU SEQRES 1 B 151 GLN ASP PHE ALA GLU LEU GLN GLY LYS TRP TYR THR ILE SEQRES 2 B 151 VAL ILE ALA ALA ASP ASN LEU GLU LYS ILE GLU GLU GLY SEQRES 3 B 151 GLY PRO LEU ARG PHE TYR PHE ARG HIS ILE ASP CYS TYR SEQRES 4 B 151 LYS ASN CYS SER GLU MSE GLU ILE THR PHE TYR VAL ILE SEQRES 5 B 151 THR ASN ASN GLN CYS SER LYS THR THR VAL ILE GLY TYR SEQRES 6 B 151 LEU LYS GLY ASN GLY THR TYR GLU THR GLN PHE GLU GLY SEQRES 7 B 151 ASN ASN ILE PHE GLN PRO LEU TYR ILE THR SER ASP LYS SEQRES 8 B 151 ILE PHE PHE THR ASN LYS ASN MSE ASP ARG ALA GLY GLN SEQRES 9 B 151 GLU THR ASN MSE ILE VAL VAL ALA GLY LYS GLY ASN ALA SEQRES 10 B 151 LEU THR PRO GLU GLU ASN GLU ILE LEU VAL GLN PHE ALA SEQRES 11 B 151 HIS GLU LYS LYS ILE PRO VAL GLU ASN ILE LEU ASN ILE SEQRES 12 B 151 LEU ALA THR ASP THR CYS PRO GLU SEQRES 1 C 151 GLN ASP PHE ALA GLU LEU GLN GLY LYS TRP TYR THR ILE SEQRES 2 C 151 VAL ILE ALA ALA ASP ASN LEU GLU LYS ILE GLU GLU GLY SEQRES 3 C 151 GLY PRO LEU ARG PHE TYR PHE ARG HIS ILE ASP CYS TYR SEQRES 4 C 151 LYS ASN CYS SER GLU MSE GLU ILE THR PHE TYR VAL ILE SEQRES 5 C 151 THR ASN ASN GLN CYS SER LYS THR THR VAL ILE GLY TYR SEQRES 6 C 151 LEU LYS GLY ASN GLY THR TYR GLU THR GLN PHE GLU GLY SEQRES 7 C 151 ASN ASN ILE PHE GLN PRO LEU TYR ILE THR SER ASP LYS SEQRES 8 C 151 ILE PHE PHE THR ASN LYS ASN MSE ASP ARG ALA GLY GLN SEQRES 9 C 151 GLU THR ASN MSE ILE VAL VAL ALA GLY LYS GLY ASN ALA SEQRES 10 C 151 LEU THR PRO GLU GLU ASN GLU ILE LEU VAL GLN PHE ALA SEQRES 11 C 151 HIS GLU LYS LYS ILE PRO VAL GLU ASN ILE LEU ASN ILE SEQRES 12 C 151 LEU ALA THR ASP THR CYS PRO GLU SEQRES 1 D 151 GLN ASP PHE ALA GLU LEU GLN GLY LYS TRP TYR THR ILE SEQRES 2 D 151 VAL ILE ALA ALA ASP ASN LEU GLU LYS ILE GLU GLU GLY SEQRES 3 D 151 GLY PRO LEU ARG PHE TYR PHE ARG HIS ILE ASP CYS TYR SEQRES 4 D 151 LYS ASN CYS SER GLU MSE GLU ILE THR PHE TYR VAL ILE SEQRES 5 D 151 THR ASN ASN GLN CYS SER LYS THR THR VAL ILE GLY TYR SEQRES 6 D 151 LEU LYS GLY ASN GLY THR TYR GLU THR GLN PHE GLU GLY SEQRES 7 D 151 ASN ASN ILE PHE GLN PRO LEU TYR ILE THR SER ASP LYS SEQRES 8 D 151 ILE PHE PHE THR ASN LYS ASN MSE ASP ARG ALA GLY GLN SEQRES 9 D 151 GLU THR ASN MSE ILE VAL VAL ALA GLY LYS GLY ASN ALA SEQRES 10 D 151 LEU THR PRO GLU GLU ASN GLU ILE LEU VAL GLN PHE ALA SEQRES 11 D 151 HIS GLU LYS LYS ILE PRO VAL GLU ASN ILE LEU ASN ILE SEQRES 12 D 151 LEU ALA THR ASP THR CYS PRO GLU MODRES 1E5P MSE A 45 MET SELENOMETHIONINE MODRES 1E5P MSE A 99 MET SELENOMETHIONINE MODRES 1E5P MSE A 108 MET SELENOMETHIONINE MODRES 1E5P MSE B 45 MET SELENOMETHIONINE MODRES 1E5P MSE B 99 MET SELENOMETHIONINE MODRES 1E5P MSE B 108 MET SELENOMETHIONINE MODRES 1E5P MSE C 45 MET SELENOMETHIONINE MODRES 1E5P MSE C 99 MET SELENOMETHIONINE MODRES 1E5P MSE C 108 MET SELENOMETHIONINE MODRES 1E5P MSE D 45 MET SELENOMETHIONINE MODRES 1E5P MSE D 99 MET SELENOMETHIONINE MODRES 1E5P MSE D 108 MET SELENOMETHIONINE HET MSE A 45 8 HET MSE A 99 11 HET MSE A 108 8 HET MSE B 45 8 HET MSE B 99 8 HET MSE B 108 8 HET MSE C 45 8 HET MSE C 99 8 HET MSE C 108 8 HET MSE D 45 8 HET MSE D 99 8 HET MSE D 108 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 HOH *703(H2 O) HELIX 1 1 PHE A 3 GLN A 7 5 5 HELIX 2 2 ASN A 19 ILE A 23 5 5 HELIX 3 3 THR A 119 LYS A 133 1 15 HELIX 4 4 PRO A 136 GLU A 138 5 3 HELIX 5 5 LEU A 144 ASP A 147 5 4 HELIX 6 6 ASN B 19 ILE B 23 5 5 HELIX 7 7 THR B 119 LYS B 133 1 15 HELIX 8 8 PRO B 136 GLU B 138 5 3 HELIX 9 9 LEU B 144 ASP B 147 5 4 HELIX 10 10 ASN C 19 ILE C 23 5 5 HELIX 11 11 THR C 119 LYS C 133 1 15 HELIX 12 12 PRO C 136 GLU C 138 5 3 HELIX 13 13 LEU C 144 ASP C 147 5 4 HELIX 14 14 ASN D 19 ILE D 23 5 5 HELIX 15 15 THR D 119 LYS D 133 1 15 HELIX 16 16 PRO D 136 GLU D 138 5 3 HELIX 17 17 LEU D 144 ASP D 147 5 4 SHEET 1 A 6 ILE A 140 ASN A 142 0 SHEET 2 A 6 TYR A 11 ALA A 16 -1 N ILE A 15 O LEU A 141 SHEET 3 A 6 VAL A 110 GLY A 113 -1 N GLY A 113 O TYR A 11 SHEET 4 A 6 LYS A 91 LYS A 97 -1 N PHE A 94 O VAL A 110 SHEET 5 A 6 ASN A 79 ILE A 87 -1 N TYR A 86 O PHE A 93 SHEET 6 A 6 TYR A 72 GLN A 75 -1 N THR A 74 O ASN A 80 SHEET 1 B 3 GLN A 56 VAL A 62 0 SHEET 2 B 3 ILE A 47 THR A 53 -1 N THR A 53 O GLN A 56 SHEET 3 B 3 TYR A 32 ILE A 36 -1 N HIS A 35 O THR A 48 SHEET 1 C 6 ILE B 140 ASN B 142 0 SHEET 2 C 6 TYR B 11 ALA B 16 -1 N ILE B 15 O LEU B 141 SHEET 3 C 6 VAL B 110 GLY B 113 -1 N GLY B 113 O TYR B 11 SHEET 4 C 6 LYS B 91 LYS B 97 -1 N PHE B 94 O VAL B 110 SHEET 5 C 6 ASN B 79 ILE B 87 -1 N TYR B 86 O PHE B 93 SHEET 6 C 6 TYR B 72 GLN B 75 -1 N THR B 74 O ASN B 80 SHEET 1 D 3 GLN B 56 VAL B 62 0 SHEET 2 D 3 ILE B 47 THR B 53 -1 N THR B 53 O GLN B 56 SHEET 3 D 3 TYR B 32 ILE B 36 -1 N HIS B 35 O THR B 48 SHEET 1 E 6 ILE C 140 ASN C 142 0 SHEET 2 E 6 TYR C 11 ALA C 16 -1 N ILE C 15 O LEU C 141 SHEET 3 E 6 VAL C 110 GLY C 113 -1 N GLY C 113 O TYR C 11 SHEET 4 E 6 LYS C 91 LYS C 97 -1 N PHE C 94 O VAL C 110 SHEET 5 E 6 ASN C 79 ILE C 87 -1 N TYR C 86 O PHE C 93 SHEET 6 E 6 TYR C 72 GLN C 75 -1 N THR C 74 O ASN C 80 SHEET 1 F 3 GLN C 56 VAL C 62 0 SHEET 2 F 3 ILE C 47 THR C 53 -1 N THR C 53 O GLN C 56 SHEET 3 F 3 TYR C 32 ILE C 36 -1 N HIS C 35 O THR C 48 SHEET 1 G 6 ILE D 140 ASN D 142 0 SHEET 2 G 6 TYR D 11 ALA D 16 -1 N ILE D 15 O LEU D 141 SHEET 3 G 6 VAL D 110 GLY D 113 -1 N GLY D 113 O TYR D 11 SHEET 4 G 6 LYS D 91 LYS D 97 -1 N PHE D 94 O VAL D 110 SHEET 5 G 6 ASN D 79 ILE D 87 -1 N TYR D 86 O PHE D 93 SHEET 6 G 6 TYR D 72 GLN D 75 -1 N THR D 74 O ASN D 80 SHEET 1 H 3 GLN D 56 VAL D 62 0 SHEET 2 H 3 ILE D 47 THR D 53 -1 N THR D 53 O GLN D 56 SHEET 3 H 3 TYR D 32 ILE D 36 -1 N HIS D 35 O THR D 48 SSBOND 1 CYS A 38 CYS A 42 1555 1555 2.05 SSBOND 2 CYS A 57 CYS A 149 1555 1555 2.06 SSBOND 3 CYS B 38 CYS B 42 1555 1555 2.04 SSBOND 4 CYS B 57 CYS B 149 1555 1555 2.07 SSBOND 5 CYS C 38 CYS C 42 1555 1555 2.02 SSBOND 6 CYS C 57 CYS C 149 1555 1555 2.09 SSBOND 7 CYS D 38 CYS D 42 1555 1555 2.04 SSBOND 8 CYS D 57 CYS D 149 1555 1555 2.06 LINK C GLU A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N GLU A 46 1555 1555 1.33 LINK C ASN A 98 N MSE A 99 1555 1555 1.32 LINK C MSE A 99 N ASP A 100 1555 1555 1.34 LINK C ASN A 107 N MSE A 108 1555 1555 1.33 LINK C MSE A 108 N ILE A 109 1555 1555 1.32 LINK C GLU B 44 N MSE B 45 1555 1555 1.34 LINK C MSE B 45 N GLU B 46 1555 1555 1.32 LINK C ASN B 98 N MSE B 99 1555 1555 1.32 LINK C MSE B 99 N ASP B 100 1555 1555 1.32 LINK C ASN B 107 N MSE B 108 1555 1555 1.34 LINK C MSE B 108 N ILE B 109 1555 1555 1.33 LINK C GLU C 44 N MSE C 45 1555 1555 1.33 LINK C MSE C 45 N GLU C 46 1555 1555 1.32 LINK C ASN C 98 N MSE C 99 1555 1555 1.32 LINK C MSE C 99 N ASP C 100 1555 1555 1.33 LINK C ASN C 107 N MSE C 108 1555 1555 1.32 LINK C MSE C 108 N ILE C 109 1555 1555 1.33 LINK C GLU D 44 N MSE D 45 1555 1555 1.32 LINK C MSE D 45 N GLU D 46 1555 1555 1.31 LINK C ASN D 98 N MSE D 99 1555 1555 1.32 LINK C MSE D 99 N ASP D 100 1555 1555 1.34 LINK C ASN D 107 N MSE D 108 1555 1555 1.33 LINK C MSE D 108 N ILE D 109 1555 1555 1.32 CRYST1 64.050 48.920 123.547 90.00 102.63 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015613 0.000000 0.003498 0.00000 SCALE2 0.000000 0.020442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008295 0.00000 MTRIX1 1 0.995830 -0.036030 0.083860 -2.18702 1 MTRIX2 1 0.005040 0.939070 0.343680 10.94148 1 MTRIX3 1 -0.091130 -0.341820 0.935340 -14.25162 1 MTRIX1 2 -0.986260 0.160460 0.039360 -51.32672 1 MTRIX2 2 0.162330 0.896810 0.411550 -11.73474 1 MTRIX3 2 0.030740 0.412290 -0.910530 70.58553 1 MTRIX1 3 -0.997790 0.035860 -0.055950 -43.31905 1 MTRIX2 3 0.033190 0.998300 0.047860 22.33536 1 MTRIX3 3 0.057570 0.045890 -0.997290 61.29768 1