HEADER OXIDOREDUCTASE 12-SEP-00 1E7Y TITLE ACTIVE SITE MUTANT (D177->N) OF GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM TITLE 2 LEUCONOSTOC MESENTEROIDES COMPLEXED WITH SUBSTRATE AND NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE 6-PHOSPHATE 1-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G6PD; COMPND 5 EC: 1.1.1.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEUCONOSTOC MESENTEROIDES; SOURCE 3 ORGANISM_TAXID: 1245; SOURCE 4 GENE: PLMZ/D177NURCE 9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SU294; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PUC-19/ASP177ASNPLMZ; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC-19/ASP177ASNPLMZ; SOURCE 10 EXPRESSION_SYSTEM_GENE: PLMZ/D177N; SOURCE 11 OTHER_DETAILS: SITE DIRECTED MUTAGENESIS OTHER_DETAILS: SITE SOURCE 12 DIRECTED MUTAGENESIS KEYWDS OXIDOREDUCTASE, OXIDOREDUCTASE (CHOH(D) - NAD(P)), GLUCOSE METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR M.J.ADAMS,M.S.COSGROVE,S.GOVER REVDAT 8 01-MAY-24 1E7Y 1 HETSYN REVDAT 7 29-JUL-20 1E7Y 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 22-MAY-19 1E7Y 1 REMARK REVDAT 5 08-MAY-19 1E7Y 1 REMARK REVDAT 4 24-OCT-18 1E7Y 1 SOURCE REVDAT 3 05-JUL-17 1E7Y 1 REMARK REVDAT 2 24-FEB-09 1E7Y 1 VERSN REVDAT 1 11-DEC-00 1E7Y 0 JRNL AUTH M.S.COSGROVE,S.GOVER,C.E.NAYLOR,L.VANDEPUTTE-RUTTEN, JRNL AUTH 2 M.J.ADAMS,H.R.LEVY JRNL TITL AN EXAMINATION OF THE ROLE OF ASP-177 IN THE HIS-ASP JRNL TITL 2 CATALYTIC DYAD OF LEUCONOSTOC MESENTEROIDES GLUCOSE JRNL TITL 3 6-PHOSPHATE DEHYDROGENASE: X-RAY STRUCTURE AND PH DEPENDENCE JRNL TITL 4 OF KINETIC PARAMETERS OF THE D177N MUTANT ENZYME JRNL REF BIOCHEMISTRY V. 39 15002 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 11106478 JRNL DOI 10.1021/BI0014608 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.S.COSGROVE,C.NAYLOR,S.PALUDIN,M.J.ADAMS,H.R.LEVY REMARK 1 TITL ON THE MECHANISM OF THE REACTION CATALYSED BY GLUCOSE REMARK 1 TITL 2 6-PHOSPHATE DEHYDROGENASE REMARK 1 REF BIOCHEMISTRY V. 37 2759 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 9485426 REMARK 1 DOI 10.1021/BI972069Y REMARK 1 REFERENCE 2 REMARK 1 AUTH P.ROWLAND,A.K.BASAK,S.GOVER,H.R.LEVY,M.J.ADAMS REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF GLUCOSE 6-PHOSPHATE REMARK 1 TITL 2 DEHYDROGENASE FROM LEUCONOSTOC MESENTEROIDES REFINED AT 2 REMARK 1 TITL 3 ANGSTROMS RESOLUTION REMARK 1 REF STRUCTURE V. 2 1073 1994 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 7881907 REMARK 1 DOI 10.1016/S0969-2126(94)00110-3 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 16723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM, USING XPLOR REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 797 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1817 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 97 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3840 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 22.9 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.290 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.840 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.840 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.350 ; 2.000 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : BG6.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : BG6.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT WAS MODELLED. REMARK 4 REMARK 4 1E7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1290005335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16723 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 22.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: REFINED COORDINATES OF APO-ENZYME IN THE SAME REMARK 200 SPACEGROUP REMARK 200 REMARK 200 REMARK: MOLECULE LOCATED BY DIFFERENCE FOURIER AND RIGID-BODY REMARK 200 REFINEMENT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION, 2+2 REMARK 280 MICROLITER DROPS. IN THE WELL BUFFER: 14% W/V PEG 400 IN 0.1M REMARK 280 HEPES-NAOH, PH 7.5 WITH 0.2M CALCIUM CHLORIDE. THE PROTEIN AT REMARK 280 15MG/ML, WITH 2.3MM GLUCOSE 6-PHOSPHATE AND 0.6MM NADPH., PH REMARK 280 7.50, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.50000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOMOLECULE DIMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 129.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2047 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN A ENGINEERED MUTATION ASP177ASN REMARK 400 BETA-D-GLUCOSE 6-PHOSPHATE + NADP(+) = D-GLUCONO-DELTA-LACTONE REMARK 400 6-PHOSPHATE + NADPH. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 36 -98.61 -116.87 REMARK 500 ASP A 64 1.72 -69.75 REMARK 500 HIS A 84 135.95 -171.59 REMARK 500 ASN A 111 72.73 54.30 REMARK 500 SER A 117 56.80 -91.87 REMARK 500 ARG A 192 -70.14 -62.21 REMARK 500 GLU A 221 -80.48 46.90 REMARK 500 ARG A 223 42.07 -90.33 REMARK 500 ASN A 239 -65.40 -99.01 REMARK 500 ALA A 308 -8.42 -53.72 REMARK 500 ASP A 323 39.20 -80.26 REMARK 500 ASN A 429 37.63 -92.74 REMARK 500 SER A 462 109.13 -59.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NDP A 509 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 477 OD1 REMARK 620 2 HOH A2016 O 105.7 REMARK 620 3 HOH A2035 O 161.1 88.5 REMARK 620 4 HOH A2076 O 78.1 72.5 94.9 REMARK 620 5 HOH A2122 O 82.9 84.7 111.3 144.8 REMARK 620 6 HOH A2123 O 76.4 144.9 84.8 73.7 129.7 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: PROCHECK, WITH IDENTIFICATION REMARK 650 CORRESPONDING TO 2.0A L. MESENTEROIDES STRUCTURE, 1DPG. REMARK 650 HELIX_ID: A,BEND AT K21 IS CONSEQUENCE OF CONSERVED P24. REMARK 650 HELIX_ID: B,THE LAST TURN IS 3_10 (CLASS 5). REMARK 650 HELIX_ID: C,THE FIRST TURN IS 3_10 (CLASS 5). REMARK 650 HELIX_ID: D,THE FIRST TURN IS 3_10 (CLASS 5). REMARK 650 HELIX_ID: F,THE FIRST TURN IS 3_10 (CLASS 5). REMARK 650 HELIX_ID: H,G231 BRIDGES H & I' SO IS NOT HELICAL. REMARK 650 HELIX_ID: I',PART OF HELIX I IN 1DPG. RESIDUES 235-239 REMARK 650 DISTORTED BY SIDECHAIN INTERACTION OF N239 WITH D235. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: INITIAL AND TERMINAL RESIDUES ARE AS REMARK 700 DEFINED BY PROCHECK. REGISTRATION IS AS GIVEN BY HYDROGEN REMARK 700 BONDS AND IN THE CASE OF SHEET COE INVOLVES RESIDUES THAT REMARK 700 IMMEDIATELY PRECEDE EACH SHEET ELEMENT. THIS IS DONE TO REMARK 700 PRESERVE OBSERVED CONSISTENCY WITH NATIVE STRUCTURE 1DPG. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DPG RELATED DB: PDB REMARK 900 GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC MESENTEROIDES REMARK 900 RELATED ID: 1E77 RELATED DB: PDB REMARK 900 COMPLEX OF ACTIVE MUTANT (Q365->C) OF GLUCOSE 6-PHOSPHATE REMARK 900 DEHYDROGENASE FROM LEUCONOSTOC MESENTEROIDES WITH SUBSTRATE REMARK 900 RELATED ID: 1E7M RELATED DB: PDB REMARK 900 ACTIVE SITE MUTANT (D177->N) OF GLUCOSE 6-PHOSPHATE DEHYDROGENASE REMARK 900 FROM LEUCONOSTOC MESENTEROIDES REMARK 900 RELATED ID: 2DPG RELATED DB: PDB REMARK 900 COMPLEX OF INACTIVE MUTANT (H240->N) OF GLUCOSE 6-PHOSPHATE REMARK 900 DEHYDROGENASE FROM LEUCONOSTOC MESENTEROIDES WITH NADP+ DBREF 1E7Y A 1 485 UNP P11411 G6PD_LEUME 1 485 SEQADV 1E7Y ASN A 177 UNP P11411 ASP 177 ENGINEERED MUTATION SEQRES 1 A 485 VAL SER GLU ILE LYS THR LEU VAL THR PHE PHE GLY GLY SEQRES 2 A 485 THR GLY ASP LEU ALA LYS ARG LYS LEU TYR PRO SER VAL SEQRES 3 A 485 PHE ASN LEU TYR LYS LYS GLY TYR LEU GLN LYS HIS PHE SEQRES 4 A 485 ALA ILE VAL GLY THR ALA ARG GLN ALA LEU ASN ASP ASP SEQRES 5 A 485 GLU PHE LYS GLN LEU VAL ARG ASP SER ILE LYS ASP PHE SEQRES 6 A 485 THR ASP ASP GLN ALA GLN ALA GLU ALA PHE ILE GLU HIS SEQRES 7 A 485 PHE SER TYR ARG ALA HIS ASP VAL THR ASP ALA ALA SER SEQRES 8 A 485 TYR ALA VAL LEU LYS GLU ALA ILE GLU GLU ALA ALA ASP SEQRES 9 A 485 LYS PHE ASP ILE ASP GLY ASN ARG ILE PHE TYR MET SER SEQRES 10 A 485 VAL ALA PRO ARG PHE PHE GLY THR ILE ALA LYS TYR LEU SEQRES 11 A 485 LYS SER GLU GLY LEU LEU ALA ASP THR GLY TYR ASN ARG SEQRES 12 A 485 LEU MET ILE GLU LYS PRO PHE GLY THR SER TYR ASP THR SEQRES 13 A 485 ALA ALA GLU LEU GLN ASN ASP LEU GLU ASN ALA PHE ASP SEQRES 14 A 485 ASP ASN GLN LEU PHE ARG ILE ASN HIS TYR LEU GLY LYS SEQRES 15 A 485 GLU MET VAL GLN ASN ILE ALA ALA LEU ARG PHE GLY ASN SEQRES 16 A 485 PRO ILE PHE ASP ALA ALA TRP ASN LYS ASP TYR ILE LYS SEQRES 17 A 485 ASN VAL GLN VAL THR LEU SER GLU VAL LEU GLY VAL GLU SEQRES 18 A 485 GLU ARG ALA GLY TYR TYR ASP THR ALA GLY ALA LEU LEU SEQRES 19 A 485 ASP MET ILE GLN ASN HIS THR MET GLN ILE VAL GLY TRP SEQRES 20 A 485 LEU ALA MET GLU LYS PRO GLU SER PHE THR ASP LYS ASP SEQRES 21 A 485 ILE ARG ALA ALA LYS ASN ALA ALA PHE ASN ALA LEU LYS SEQRES 22 A 485 ILE TYR ASP GLU ALA GLU VAL ASN LYS TYR PHE VAL ARG SEQRES 23 A 485 ALA GLN TYR GLY ALA GLY ASP SER ALA ASP PHE LYS PRO SEQRES 24 A 485 TYR LEU GLU GLU LEU ASP VAL PRO ALA ASP SER LYS ASN SEQRES 25 A 485 ASN THR PHE ILE ALA GLY GLU LEU GLN PHE ASP LEU PRO SEQRES 26 A 485 ARG TRP GLU GLY VAL PRO PHE TYR VAL ARG SER GLY LYS SEQRES 27 A 485 ARG LEU ALA ALA LYS GLN THR ARG VAL ASP ILE VAL PHE SEQRES 28 A 485 LYS ALA GLY THR PHE ASN PHE GLY SER GLU GLN GLU ALA SEQRES 29 A 485 GLN GLU ALA VAL LEU SER ILE ILE ILE ASP PRO LYS GLY SEQRES 30 A 485 ALA ILE GLU LEU LYS LEU ASN ALA LYS SER VAL GLU ASP SEQRES 31 A 485 ALA PHE ASN THR ARG THR ILE ASP LEU GLY TRP THR VAL SEQRES 32 A 485 SER ASP GLU ASP LYS LYS ASN THR PRO GLU PRO TYR GLU SEQRES 33 A 485 ARG MET ILE HIS ASP THR MET ASN GLY ASP GLY SER ASN SEQRES 34 A 485 PHE ALA ASP TRP ASN GLY VAL SER ILE ALA TRP LYS PHE SEQRES 35 A 485 VAL ASP ALA ILE SER ALA VAL TYR THR ALA ASP LYS ALA SEQRES 36 A 485 PRO LEU GLU THR TYR LYS SER GLY SER MET GLY PRO GLU SEQRES 37 A 485 ALA SER ASP LYS LEU LEU ALA ALA ASN GLY ASP ALA TRP SEQRES 38 A 485 VAL PHE LYS GLY HET BG6 A 501 16 HET CA A 508 1 HET NDP A 509 27 HETNAM BG6 6-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETSYN BG6 BETA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D- HETSYN 2 BG6 GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 BG6 GLUCOSE FORMUL 2 BG6 C6 H13 O9 P FORMUL 3 CA CA 2+ FORMUL 4 NDP C21 H30 N7 O17 P3 FORMUL 5 HOH *131(H2 O) HELIX 1 A ASP A 16 LYS A 31 1SEE REMARK 650 16 HELIX 2 B ASP A 51 PHE A 65 1SEE REMARK 650 15 HELIX 3 B' GLN A 69 ILE A 76 1SEE REMARK 650 8 HELIX 4 C ALA A 89 LYS A 105 1SEE REMARK 650 17 HELIX 5 D PRO A 120 SER A 132 1SEE REMARK 650 13 HELIX 6 E TYR A 154 GLU A 165 1 12 HELIX 7 F GLU A 183 GLY A 194 1SEE REMARK 650 12 HELIX 8 G PRO A 196 ASP A 199 1 4 HELIX 9 H ALA A 224 ALA A 230 1SEE REMARK 650 7 HELIX 10 I' ALA A 232 ASP A 235 1SEE REMARK 650 4 HELIX 11 J ASP A 258 PHE A 269 1 12 HELIX 12 K GLU A 277 TYR A 283 1 7 HELIX 13 L ASP A 405 ASN A 410 1 6 HELIX 14 M PRO A 414 ASN A 424 1 11 HELIX 15 N TRP A 433 THR A 451 1 19 HELIX 16 O GLU A 468 ALA A 475 1 8 SHEET 1 COE 6 PHE A 79 ALA A 83 0 SHEET 2 COE 6 PHE A 39 ALA A 45 1 N ALA A 45 O HIS A 78 SHEET 3 COE 6 THR A 6 PHE A 11 1 N THR A 6 O HIS A 38 SHEET 4 COE 6 ARG A 112 MET A 116 1 O ASN A 111 N LEU A 7 SHEET 5 COE 6 ASN A 142 ILE A 146 1 O TYR A 141 N ARG A 112 SHEET 6 COE 6 LEU A 173 ARG A 175 1 O GLN A 172 N LEU A 144 SHEET 1 DIM 9 THR A 394 THR A 402 0 SHEET 2 DIM 9 ALA A 378 LYS A 386 -1 N ILE A 379 O TRP A 401 SHEET 3 DIM 9 VAL A 368 ASP A 374 -1 N VAL A 368 O LYS A 382 SHEET 4 DIM 9 GLN A 344 PHE A 351 -1 O THR A 345 N ILE A 373 SHEET 5 DIM 9 ILE A 207 SER A 215 -1 O ASN A 209 N VAL A 350 SHEET 6 DIM 9 PHE A 332 SER A 336 1 N TYR A 333 O VAL A 210 SHEET 7 DIM 9 PHE A 315 LEU A 320 -1 N ILE A 316 O SER A 336 SHEET 8 DIM 9 PHE A 284 TYR A 289 -1 N VAL A 285 O ALA A 317 SHEET 9 DIM 9 LEU A 457 TYR A 460 1 O GLU A 458 N GLN A 288 LINK OD1 ASN A 477 CA CA A 508 1555 1555 2.15 LINK CA CA A 508 O HOH A2016 1555 3455 2.17 LINK CA CA A 508 O HOH A2035 1555 1555 2.09 LINK CA CA A 508 O HOH A2076 1555 1555 2.27 LINK CA CA A 508 O HOH A2122 1555 1555 2.51 LINK CA CA A 508 O HOH A2123 1555 1555 2.17 CISPEP 1 LYS A 148 PRO A 149 0 -0.17 CISPEP 2 ASP A 374 PRO A 375 0 0.17 CRYST1 129.000 44.000 91.100 90.00 105.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007752 0.000000 0.002106 0.00000 SCALE2 0.000000 0.022727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011375 0.00000