HEADER ELECTRON TRANSPORT 21-SEP-00 1E8J TITLE SOLUTION STRUCTURE OF DESULFOVIBRIO GIGAS ZINC RUBREDOXIN, NMR, 20 TITLE 2 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: IRON-SULFUR-PROTEIN, ZINC SUBSTITUTED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO GIGAS; SOURCE 3 ORGANISM_TAXID: 879; SOURCE 4 CELLULAR_LOCATION: CYTOPLASM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRPPL1; SOURCE 10 EXPRESSION_SYSTEM_GENE: RDDG KEYWDS ELECTRON TRANSPORT, ZINC-SUBSTITUTION, THERMOSTABILITY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.LAMOSA,L.BRENNAN,H.VIS,D.L.TURNER,H.SANTOS REVDAT 5 09-OCT-19 1E8J 1 JRNL REVDAT 4 30-JAN-13 1E8J 1 HEADER KEYWDS JRNL REMARK REVDAT 4 2 1 VERSN REVDAT 3 24-FEB-09 1E8J 1 VERSN REVDAT 2 18-JUL-03 1E8J 1 REMARK REVDAT 1 18-OCT-01 1E8J 0 JRNL AUTH P.LAMOSA,L.BRENNAN,H.VIS,D.L.TURNER,H.SANTOS JRNL TITL NMR STRUCTURE OF DESULFOVIBRIO GIGAS RUBREDOXIN: A MODEL FOR JRNL TITL 2 STUDYING PROTEIN STABILIZATION BY COMPATIBLE SOLUTES. JRNL REF EXTREMOPHILES V. 5 303 2001 JRNL REFN ISSN 1431-0651 JRNL PMID 11699644 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.LAMOSA,A.BURKE,R.PEIST,R.HUBER,M.-Y.LIU,G.SILVA, REMARK 1 AUTH 2 C.RODRIGUES-POUSADA,J.LEGALL,C.MAYCOCK,H.SANTOS REMARK 1 TITL THERMOSTABILIZATION OF PROTEINS BY DIGLYCEROL PHOSPHATE, A REMARK 1 TITL 2 NEW COMPATIBLE SOLUTE FROM THE HYPERTHERMOPHILE REMARK 1 TITL 3 ARCHAEOGLOBUS FULGIDUS REMARK 1 REF APPL.ENVIRON.MICROBIOL. V. 66 1974 2000 REMARK 1 REFN ISSN 0099-2240 REMARK 1 PMID 10788369 REMARK 1 DOI 10.1128/AEM.66.5.1974-1979.2000 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INDYANA REMARK 3 AUTHORS : D.L.TURNER,L.BRENNAN,H. MEYER,C.LOHAUS, REMARK 3 C.SIETHOFF,H.S.COSTA,B.GONZALEZ,H.SANTOS, REMARK 3 J.E.SUAREZ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1E8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1290005387. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D-1H-NOESY 2D-1H-TOCSY 2D-1H REMARK 210 -COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : INDYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS WITH REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 4 H TYR A 13 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 45.71 173.38 REMARK 500 1 ASP A 14 99.85 50.22 REMARK 500 1 SER A 22 -26.88 159.87 REMARK 500 1 PRO A 34 165.54 -42.31 REMARK 500 1 ASP A 36 18.21 -144.87 REMARK 500 1 CYS A 39 100.31 -42.20 REMARK 500 1 ALA A 44 133.05 -24.68 REMARK 500 1 SER A 45 -175.41 -57.75 REMARK 500 1 LYS A 46 38.65 -90.53 REMARK 500 1 LYS A 51 100.71 -42.62 REMARK 500 2 CYS A 9 -68.40 -120.20 REMARK 500 2 ASP A 21 -74.52 -133.62 REMARK 500 2 PRO A 34 165.27 -42.30 REMARK 500 2 ASP A 36 20.68 -148.80 REMARK 500 2 CYS A 39 100.68 -42.98 REMARK 500 2 ALA A 44 135.13 -26.11 REMARK 500 2 SER A 45 -171.57 -60.28 REMARK 500 2 LYS A 46 36.00 -91.08 REMARK 500 2 PHE A 49 149.46 -36.07 REMARK 500 2 LYS A 51 98.20 -44.63 REMARK 500 3 ASP A 2 96.60 -171.88 REMARK 500 3 CYS A 9 -67.81 -120.17 REMARK 500 3 TYR A 11 -151.26 35.29 REMARK 500 3 GLU A 12 82.92 163.58 REMARK 500 3 PRO A 20 -164.11 -60.73 REMARK 500 3 ASP A 21 33.59 81.62 REMARK 500 3 SER A 22 95.39 69.82 REMARK 500 3 PRO A 34 163.38 -41.11 REMARK 500 3 ASP A 36 22.07 -151.70 REMARK 500 3 CYS A 39 100.81 -43.32 REMARK 500 3 ALA A 44 131.57 -23.55 REMARK 500 3 SER A 45 -170.89 -58.67 REMARK 500 3 LYS A 46 30.92 -92.28 REMARK 500 3 PHE A 49 149.62 -36.53 REMARK 500 3 LYS A 51 98.20 -40.20 REMARK 500 4 ASP A 2 135.74 -172.64 REMARK 500 4 CYS A 9 -68.91 -120.32 REMARK 500 4 TYR A 11 -150.18 34.68 REMARK 500 4 GLU A 12 80.25 163.08 REMARK 500 4 ASP A 21 60.92 179.26 REMARK 500 4 SER A 22 52.55 39.57 REMARK 500 4 PRO A 34 -70.82 -31.87 REMARK 500 4 ASP A 35 -49.39 151.80 REMARK 500 4 CYS A 39 101.34 -44.43 REMARK 500 4 ALA A 44 128.79 -21.64 REMARK 500 4 SER A 45 -171.76 -53.78 REMARK 500 4 LYS A 46 30.34 -92.83 REMARK 500 4 PHE A 49 149.81 -35.78 REMARK 500 4 LYS A 51 98.30 -40.51 REMARK 500 5 ASP A 2 -72.99 165.05 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1E8J A 1 52 UNP P00270 RUBR_DESGI 1 52 SEQRES 1 A 52 MET ASP ILE TYR VAL CYS THR VAL CYS GLY TYR GLU TYR SEQRES 2 A 52 ASP PRO ALA LYS GLY ASP PRO ASP SER GLY ILE LYS PRO SEQRES 3 A 52 GLY THR LYS PHE GLU ASP LEU PRO ASP ASP TRP ALA CYS SEQRES 4 A 52 PRO VAL CYS GLY ALA SER LYS ASP ALA PHE GLU LYS GLN SHEET 1 A 2 TYR A 4 VAL A 5 0 SHEET 2 A 2 GLU A 50 LYS A 51 -1 O GLU A 50 N VAL A 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1