HEADER HYDROLASE 20-OCT-00 1E9K TITLE THE STRUCTURE OF THE RACK1 INTERACTION SITES LOCATED WITHIN THE UNIQUE TITLE 2 N-TERMINAL REGION OF THE CAMP-SPECIFIC PHOSPHODIESTERASE, PDE4D5. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RACK1 INTERACTION SITE WITHIN UNIQUE N-TERMINAL REGION COMPND 5 (RESIDUES 12-49); COMPND 6 SYNONYM: DPDE3,PDE43; COMPND 7 EC: 3.1.4.53; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE, CAMP-SPECIFIC PHOSPHODIESTERASE EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR G.B.BOLGER,K.J.SMITH,A.MCCAHILL,E.I.HYDE,M.R.STEELE,M.D.HOUSLAY REVDAT 4 15-MAY-24 1E9K 1 REMARK REVDAT 3 20-JUN-18 1E9K 1 COMPND SOURCE JRNL DBREF REVDAT 2 24-FEB-09 1E9K 1 VERSN REVDAT 1 18-OCT-01 1E9K 0 JRNL AUTH K.J.SMITH,G.S.BAILLIE,E.I.HYDE,X.LI,T.M.HOUSLAY,A.MCCAHILL, JRNL AUTH 2 A.J.DUNLOP,G.B.BOLGER,E.KLUSSMANN,D.R.ADAMS,M.D.HOUSLAY JRNL TITL 1H NMR STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF A JRNL TITL 2 CAMP-SPECIFIC PHOSPHODIESTERASE-4D5 (PDE4D5) N-TERMINAL JRNL TITL 3 REGION PEPTIDE THAT DISRUPTS PDE4D5 INTERACTION WITH THE JRNL TITL 4 SIGNALLING SCAFFOLD PROTEINS, BETA-ARRESTIN AND RACK1. JRNL REF CELL. SIGNAL. V. 19 2612 2007 JRNL REFN ISSN 0898-6568 JRNL PMID 17900862 JRNL DOI 10.1016/J.CELLSIG.2007.08.015 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 1E9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1290005453. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: MEAN STRUCTURE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD2 PRO A 12 H TRP A 13 1.29 REMARK 500 O PRO A 10 HD3 PRO A 12 1.29 REMARK 500 O SER A 21 H ARG A 23 1.33 REMARK 500 O LYS A 20 H GLU A 24 1.37 REMARK 500 O SER A 32 H THR A 34 1.49 REMARK 500 O SER A 21 OD1 ASN A 25 2.15 REMARK 500 O PRO A 10 CD PRO A 12 2.15 REMARK 500 O LYS A 20 N GLU A 24 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 12 N PRO A 12 CA -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 11 CB - CA - C ANGL. DEV. = 14.8 DEGREES REMARK 500 TRP A 13 NE1 - CE2 - CZ2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP A 13 CG - CD2 - CE3 ANGL. DEV. = -6.5 DEGREES REMARK 500 LYS A 20 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 38.51 -175.33 REMARK 500 VAL A 4 -72.51 -61.90 REMARK 500 ASP A 5 45.69 -161.36 REMARK 500 ASN A 6 85.77 -152.30 REMARK 500 HIS A 8 -33.52 -177.06 REMARK 500 PRO A 10 -83.60 -67.30 REMARK 500 ASN A 11 79.51 -118.66 REMARK 500 LEU A 18 21.02 -161.64 REMARK 500 LEU A 22 39.71 -57.44 REMARK 500 ARG A 23 -63.62 -170.60 REMARK 500 GLU A 24 39.73 -77.10 REMARK 500 LEU A 27 16.04 -148.67 REMARK 500 LYS A 31 -39.03 -33.01 REMARK 500 SER A 32 -82.70 -73.76 REMARK 500 LYS A 33 49.78 -69.36 REMARK 500 THR A 34 -30.28 -178.57 REMARK 500 ARG A 36 -0.23 -142.82 REMARK 500 LYS A 37 -96.31 -104.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 23 0.31 SIDE CHAIN REMARK 500 ARG A 36 0.29 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1E9K A 1 38 UNP Q08499 PDE4D_HUMAN 12 49 SEQRES 1 A 38 VAL PRO GLU VAL ASP ASN PRO HIS CYS PRO ASN PRO TRP SEQRES 2 A 38 LEU ASN GLU ASP LEU VAL LYS SER LEU ARG GLU ASN LEU SEQRES 3 A 38 LEU GLN HIS GLU LYS SER LYS THR ALA ARG LYS SER HELIX 1 1 ASN A 11 VAL A 19 1 9 HELIX 2 2 GLN A 28 ARG A 36 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000