HEADER IMMUNE SYSTEM 26-JAN-00 1ED3 TITLE CRYSTAL STRUCTURE OF RAT MINOR HISTOCOMPATIBILITY ANTIGEN COMPLEX RT1- TITLE 2 AA/MTF-E. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS I MAJOR HISTOCOMPATIBILITY ANTIGEN RT1-AA; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAINS; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PEPTIDE MTF-E (13N3E); COMPND 12 CHAIN: C, F; COMPND 13 FRAGMENT: RESIDUES 29-41 OF RAT ATPASE 6; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-22B; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: NORWAY RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET-22B; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN RATS KEYWDS MAJOR HISTOCOMPATIBILITY COMPLEX, RAT MINOR HISTOCOMPATIBILITY KEYWDS 2 COMPLEX, MHC, IMMUNOLOGY, PEPTIDE ANTIGEN PRESENTATION, CELLULAR KEYWDS 3 IMMUNITY, CELL SURFACE RECEPTOR, T CELL RECEPTOR LIGAND, IMMUNE KEYWDS 4 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.A.SPEIR,J.STEVENS,E.JOLY,G.W.BUTCHER,I.A.WILSON REVDAT 6 13-NOV-24 1ED3 1 REMARK REVDAT 5 09-AUG-23 1ED3 1 REMARK REVDAT 4 24-JAN-18 1ED3 1 JRNL REVDAT 3 24-FEB-09 1ED3 1 VERSN REVDAT 2 01-APR-03 1ED3 1 JRNL REVDAT 1 28-FEB-01 1ED3 0 JRNL AUTH J.A.SPEIR,J.STEVENS,E.JOLY,G.W.BUTCHER,I.A.WILSON JRNL TITL TWO DIFFERENT, HIGHLY EXPOSED, BULGED STRUCTURES FOR AN JRNL TITL 2 UNUSUALLY LONG PEPTIDE BOUND TO RAT MHC CLASS I RT1-AA. JRNL REF IMMUNITY V. 14 81 2001 JRNL REFN ISSN 1074-7613 JRNL PMID 11163232 JRNL DOI 10.1016/S1074-7613(01)00091-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.K.BHUYAN,L.L.YOUNG,K.F.LINDAHL,G.W.BUTCHER REMARK 1 TITL IDENTIFICATION OF THE RAT MATERNALLY TRANSMITTED MINOR REMARK 1 TITL 2 HISTOCOMPATIBILITY ANTIGEN REMARK 1 REF J.IMMUNOL. V. 158 3753 1997 REMARK 1 REFN ISSN 0022-1767 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.STEVENS,K.-H.WIESMULLER,P.J.BARKER,P.WALDEN,G.W.BUCHER, REMARK 1 AUTH 2 E.JOLY REMARK 1 TITL EFFICIENT GENERATION OF MAJOR HISTOCOMPATIBILITY COMPLEX REMARK 1 TITL 2 CLASS I-PEPTIDE COMPLEXES USING SYNTHETIC PEPTIDE LIBRARIES REMARK 1 REF J.BIOL.CHEM. V. 273 2874 1998 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.273.5.2874 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.STEVENS,K.-H.WIESMULLER,P.WALDEN,E.JOLY REMARK 1 TITL PEPTIDE LENGTH PREFERENCES FOR RAT AND MOUSE MHC CLASS I REMARK 1 TITL 2 MOLECULES USING RANDOM PEPTIDE LIBRARIES REMARK 1 REF EUR.J.BIOCHEM. V. 28 1272 1998 REMARK 1 REFN ISSN 0014-2956 REMARK 1 DOI 10.1002/(SICI)1521-4141(199804)28:04<1272::AID-IMMU1272>3.0. REMARK 1 DOI 2 CO;2-E REMARK 1 REFERENCE 4 REMARK 1 AUTH S.J.POWIS,L.L.YOUNG,E.JOLY,P.J.BARKER,L.RICHARDSON, REMARK 1 AUTH 2 R.P.BRANDT,C.J.MELIEF,J.C.HOWARD,G.W.BUTCHER REMARK 1 TITL THE RAT CIM EFFECT: TAP ALLELE-DEPENDENT CHANGES IN A CLASS REMARK 1 TITL 2 I MHC ANCHOR MOTIF AND EVIDENCE AGAINST C-TERMINAL TRIMMING REMARK 1 TITL 3 OF PEPTIDES IN THE ER REMARK 1 REF IMMUNITY V. 4 159 1996 REMARK 1 REFN ISSN 1074-7613 REMARK 1 DOI 10.1016/S1074-7613(00)80680-9 REMARK 1 REFERENCE 5 REMARK 1 AUTH C.J.THORPE,D.S.MOSS,S.J.POWIS,J.C.HOWARD,G.W.BUTCHER, REMARK 1 AUTH 2 P.J.TRAVERS REMARK 1 TITL AN ANALYSIS OF THE ANTIGEN BINDING SITE OF RT1-AA SUGGESTS REMARK 1 TITL 2 AN ALLELE-SPECIFIC MOTIF REMARK 1 REF IMMUNOGENETICS V. 41 329 1995 REMARK 1 REFN ISSN 0093-7711 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER AS IMPLEMENTED IN X-PLOR AND CNS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 28978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2177 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2414 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 197 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.20000 REMARK 3 B22 (A**2) : -6.74000 REMARK 3 B33 (A**2) : 3.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.460 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.290 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.430 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.460 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 33.81 REMARK 3 REMARK 3 NCS MODEL : RESTRAINED, RESTRAINED, RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.040 ; 300 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 2 POSITIONAL (A) : 0.044 ; 300 REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 3 POSITIONAL (A) : 0.039 ; 300 REMARK 3 GROUP 3 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ED3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-00. REMARK 100 THE DEPOSITION ID IS D_1000010462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-97 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28978 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2CLR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MORPHOLINE ETHANSULFONIC ACID REMARK 280 (MES), 0.2M AMMONIUM SULFATE, 15-20% MPEG 5000, 0.025M BETA- REMARK 280 OCTYL-GLUCOSIDE, 0.5% GLYCEROL, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.47500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO HETEROTRIMERIC BIOLOGICAL ASSEMBLIES IN THE REMARK 300 ASYMMETRIC UNIT CONSTRUCTED FROM CHAINS A, B, AND C, OR CHAINS D, E, REMARK 300 AND F. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 163 OE2 GLU E 69 3655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 43 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO C 4 C - N - CA ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -128.58 60.31 REMARK 500 ASN A 42 112.13 178.11 REMARK 500 PRO A 43 115.10 -34.48 REMARK 500 GLU A 55 -31.81 -139.54 REMARK 500 ARG A 111 146.74 -176.69 REMARK 500 TYR A 123 -84.40 -124.09 REMARK 500 PRO A 210 -177.79 -63.48 REMARK 500 LEU A 224 36.19 -78.34 REMARK 500 ASP A 227 69.95 -116.58 REMARK 500 HIS B 31 135.79 179.71 REMARK 500 ASN B 48 86.72 41.76 REMARK 500 TRP B 60 -9.12 77.00 REMARK 500 PHE C 3 -72.67 -47.80 REMARK 500 ASP D 29 -130.76 62.48 REMARK 500 ARG D 44 142.53 -176.05 REMARK 500 GLU D 89 179.84 -57.83 REMARK 500 ASP D 106 30.52 -99.08 REMARK 500 LEU D 109 101.63 -53.76 REMARK 500 ARG D 111 145.67 -177.33 REMARK 500 TYR D 123 -83.38 -123.20 REMARK 500 SER D 182 119.33 -160.36 REMARK 500 PRO D 195 -7.52 -53.81 REMARK 500 PRO D 210 -176.56 -65.94 REMARK 500 ASN D 220 42.95 70.16 REMARK 500 HIS E 31 134.29 -176.37 REMARK 500 PRO E 47 -72.68 -61.59 REMARK 500 LEU E 54 151.54 -47.44 REMARK 500 TRP E 60 -13.06 80.74 REMARK 500 SER F 6 177.46 -57.49 REMARK 500 ARG F 8 61.53 32.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 1ED3 A 1 275 UNP P16391 HA12_RAT 25 299 DBREF 1ED3 B 1 99 UNP P07151 B2MG_RAT 21 119 DBREF 1ED3 C 1 13 UNP P05504 ATP6_RAT 29 41 DBREF 1ED3 D 1 275 UNP P16391 HA12_RAT 25 299 DBREF 1ED3 E 1 99 UNP P07151 B2MG_RAT 29 119 DBREF 1ED3 F 1 13 UNP P05504 ATP6_RAT 29 41 SEQRES 1 A 275 GLY SER HIS SER LEU ARG TYR PHE TYR THR ALA VAL SER SEQRES 2 A 275 ARG PRO GLY LEU GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA GLU ASN PRO ARG MET GLU PRO ARG ALA ARG TRP MET SEQRES 5 A 275 GLU ARG GLU GLY PRO GLU TYR TRP GLU GLN GLN THR ARG SEQRES 6 A 275 ILE ALA LYS GLU TRP GLU GLN ILE TYR ARG VAL ASP LEU SEQRES 7 A 275 ARG THR LEU ARG GLY TYR TYR ASN GLN SER GLU GLY GLY SEQRES 8 A 275 SER HIS THR ILE GLN GLU MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 275 SER ASP GLY SER LEU LEU ARG GLY TYR ARG GLN ASP ALA SEQRES 10 A 275 TYR ASP GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 275 LYS THR TRP THR ALA ALA ASP PHE ALA ALA GLN ILE THR SEQRES 12 A 275 ARG ASN LYS TRP GLU ARG ALA ARG TYR ALA GLU ARG LEU SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU SER SEQRES 14 A 275 ARG TYR LEU GLU LEU GLY LYS GLU THR LEU LEU ARG SER SEQRES 15 A 275 ASP PRO PRO GLU ALA HIS VAL THR LEU HIS PRO ARG PRO SEQRES 16 A 275 GLU GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 275 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 275 GLU ASP LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 275 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 A 275 VAL GLU HIS GLU GLY LEU PRO LYS PRO LEU SER GLN ARG SEQRES 22 A 275 TRP GLU SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLN PHE HIS PRO PRO GLN ILE GLU ILE GLU LEU SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO ASN ILE GLU MET SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP VAL TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS VAL THR LEU LYS GLU PRO LYS SEQRES 8 B 99 THR VAL THR TRP ASP ARG ASP MET SEQRES 1 C 13 ILE LEU PHE PRO SER SER GLU ARG LEU ILE SER ASN ARG SEQRES 1 D 275 GLY SER HIS SER LEU ARG TYR PHE TYR THR ALA VAL SER SEQRES 2 D 275 ARG PRO GLY LEU GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 D 275 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 275 ALA GLU ASN PRO ARG MET GLU PRO ARG ALA ARG TRP MET SEQRES 5 D 275 GLU ARG GLU GLY PRO GLU TYR TRP GLU GLN GLN THR ARG SEQRES 6 D 275 ILE ALA LYS GLU TRP GLU GLN ILE TYR ARG VAL ASP LEU SEQRES 7 D 275 ARG THR LEU ARG GLY TYR TYR ASN GLN SER GLU GLY GLY SEQRES 8 D 275 SER HIS THR ILE GLN GLU MET TYR GLY CYS ASP VAL GLY SEQRES 9 D 275 SER ASP GLY SER LEU LEU ARG GLY TYR ARG GLN ASP ALA SEQRES 10 D 275 TYR ASP GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 D 275 LYS THR TRP THR ALA ALA ASP PHE ALA ALA GLN ILE THR SEQRES 12 D 275 ARG ASN LYS TRP GLU ARG ALA ARG TYR ALA GLU ARG LEU SEQRES 13 D 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU SER SEQRES 14 D 275 ARG TYR LEU GLU LEU GLY LYS GLU THR LEU LEU ARG SER SEQRES 15 D 275 ASP PRO PRO GLU ALA HIS VAL THR LEU HIS PRO ARG PRO SEQRES 16 D 275 GLU GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 275 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 D 275 GLU ASP LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 D 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 D 275 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 D 275 VAL GLU HIS GLU GLY LEU PRO LYS PRO LEU SER GLN ARG SEQRES 22 D 275 TRP GLU SEQRES 1 E 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 E 99 PRO PRO GLU ASN GLY LYS PRO ASN PHE LEU ASN CYS TYR SEQRES 3 E 99 VAL SER GLN PHE HIS PRO PRO GLN ILE GLU ILE GLU LEU SEQRES 4 E 99 LEU LYS ASN GLY LYS LYS ILE PRO ASN ILE GLU MET SER SEQRES 5 E 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 E 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP VAL TYR SEQRES 7 E 99 ALA CYS ARG VAL LYS HIS VAL THR LEU LYS GLU PRO LYS SEQRES 8 E 99 THR VAL THR TRP ASP ARG ASP MET SEQRES 1 F 13 ILE LEU PHE PRO SER SER GLU ARG LEU ILE SER ASN ARG FORMUL 7 HOH *139(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 ARG A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 LEU A 180 1 6 HELIX 7 7 LYS A 253 GLN A 255 5 3 HELIX 8 8 ALA D 49 GLU D 53 5 5 HELIX 9 9 GLY D 56 TYR D 85 1 30 HELIX 10 10 ASP D 137 ALA D 150 1 14 HELIX 11 11 ARG D 151 GLY D 162 1 12 HELIX 12 12 GLY D 162 GLY D 175 1 14 HELIX 13 13 GLY D 175 LEU D 180 1 6 HELIX 14 14 LEU D 224 GLN D 226 5 3 HELIX 15 15 LYS D 253 GLN D 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 O ARG A 35 N GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N ALA A 24 O PHE A 36 SHEET 4 A 8 SER A 2 VAL A 12 -1 O ARG A 6 N TYR A 27 SHEET 5 A 8 THR A 94 GLY A 104 -1 O ILE A 95 N ALA A 11 SHEET 6 A 8 LEU A 109 TYR A 118 -1 N LEU A 110 O ASP A 102 SHEET 7 A 8 ARG A 121 LEU A 126 -1 O ARG A 121 N TYR A 118 SHEET 8 A 8 TRP A 133 ALA A 135 -1 N THR A 134 O ALA A 125 SHEET 1 B 4 GLU A 186 PRO A 193 0 SHEET 2 B 4 VAL A 199 PHE A 208 -1 N THR A 200 O HIS A 192 SHEET 3 B 4 PHE A 241 VAL A 249 -1 N PHE A 241 O PHE A 208 SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 C 4 GLU A 186 PRO A 193 0 SHEET 2 C 4 VAL A 199 PHE A 208 -1 N THR A 200 O HIS A 192 SHEET 3 C 4 PHE A 241 VAL A 249 -1 N PHE A 241 O PHE A 208 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 ASP A 223 0 SHEET 2 D 4 ILE A 213 LEU A 219 -1 N LEU A 219 O GLU A 222 SHEET 3 D 4 TYR A 257 HIS A 263 -1 N THR A 258 O GLN A 218 SHEET 4 D 4 LEU A 270 GLN A 272 -1 N LEU A 270 O VAL A 261 SHEET 1 E 4 GLN B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 N ASN B 24 O TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 N PHE B 62 O PHE B 30 SHEET 4 E 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 F 4 GLN B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 N ASN B 24 O TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 N PHE B 62 O PHE B 30 SHEET 4 F 4 SER B 55 PHE B 56 -1 O SER B 55 N TYR B 63 SHEET 1 G 4 LYS B 44 LYS B 45 0 SHEET 2 G 4 ILE B 35 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 G 4 TYR B 78 HIS B 84 -1 O ALA B 79 N LEU B 40 SHEET 4 G 4 LYS B 91 THR B 94 -1 N LYS B 91 O VAL B 82 SHEET 1 H 8 GLU D 46 PRO D 47 0 SHEET 2 H 8 THR D 31 ASP D 37 -1 O ARG D 35 N GLU D 46 SHEET 3 H 8 ARG D 21 VAL D 28 -1 N ALA D 24 O PHE D 36 SHEET 4 H 8 HIS D 3 VAL D 12 -1 O ARG D 6 N TYR D 27 SHEET 5 H 8 THR D 94 VAL D 103 -1 O ILE D 95 N ALA D 11 SHEET 6 H 8 LEU D 109 TYR D 118 -1 N LEU D 110 O ASP D 102 SHEET 7 H 8 ARG D 121 LEU D 126 -1 O ARG D 121 N TYR D 118 SHEET 8 H 8 TRP D 133 ALA D 135 -1 N THR D 134 O ALA D 125 SHEET 1 I 4 GLU D 186 PRO D 193 0 SHEET 2 I 4 VAL D 199 PHE D 208 -1 N THR D 200 O HIS D 192 SHEET 3 I 4 PHE D 241 VAL D 249 -1 N PHE D 241 O PHE D 208 SHEET 4 I 4 MET D 228 LEU D 230 -1 O GLU D 229 N SER D 246 SHEET 1 J 4 GLU D 186 PRO D 193 0 SHEET 2 J 4 VAL D 199 PHE D 208 -1 N THR D 200 O HIS D 192 SHEET 3 J 4 PHE D 241 VAL D 249 -1 N PHE D 241 O PHE D 208 SHEET 4 J 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 K 3 THR D 214 LEU D 219 0 SHEET 2 K 3 TYR D 257 GLU D 262 -1 N THR D 258 O GLN D 218 SHEET 3 K 3 LEU D 270 GLN D 272 -1 N LEU D 270 O VAL D 261 SHEET 1 L 4 GLN E 6 SER E 11 0 SHEET 2 L 4 ASN E 21 PHE E 30 -1 N ASN E 24 O TYR E 10 SHEET 3 L 4 PHE E 62 PHE E 70 -1 N PHE E 62 O PHE E 30 SHEET 4 L 4 GLU E 50 MET E 51 -1 N GLU E 50 O HIS E 67 SHEET 1 M 4 LYS E 44 LYS E 45 0 SHEET 2 M 4 GLU E 36 LYS E 41 -1 N LYS E 41 O LYS E 44 SHEET 3 M 4 TYR E 78 LYS E 83 -1 O ALA E 79 N LEU E 40 SHEET 4 M 4 LYS E 91 THR E 94 -1 N LYS E 91 O VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.04 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.04 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.02 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 0.00 CISPEP 2 HIS B 31 PRO B 32 0 -0.37 CISPEP 3 TYR D 209 PRO D 210 0 -0.11 CISPEP 4 HIS E 31 PRO E 32 0 0.00 CRYST1 86.950 90.720 117.410 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011501 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008517 0.00000