data_1EFQ # _entry.id 1EFQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EFQ pdb_00001efq 10.2210/pdb1efq/pdb RCSB RCSB010532 ? ? WWPDB D_1000010532 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1EEU ;Effect of Aspartic Acid in Beta-sheet Regions on Protein Stability ; unspecified PDB 1LVE ;Native Len in orthorhombic crystal form ; unspecified PDB 2LVE ;recombinant Len in hexagonal crystal form ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EFQ _pdbx_database_status.recvd_initial_deposition_date 2000-02-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pokkuluri, P.R.' 1 'Cai, X.' 2 'Gu, M.' 3 'Stevens, F.J.' 4 'Schiffer, M.' 5 # _citation.id primary _citation.title 'Factors contributing to decreased protein stability when aspartic acid residues are in beta-sheet regions.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 11 _citation.page_first 1687 _citation.page_last 1694 _citation.year 2002 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12070321 _citation.pdbx_database_id_DOI 10.1110/ps.4920102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pokkuluri, P.R.' 1 ? primary 'Gu, M.' 2 ? primary 'Cai, X.' 3 ? primary 'Raffen, R.' 4 ? primary 'Stevens, F.J.' 5 ? primary 'Schiffer, M.' 6 ? # _cell.entry_id 1EFQ _cell.length_a 65.8 _cell.length_b 65.8 _cell.length_c 48.1 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 120.0 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EFQ _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'KAPPA-4 IMMUNOGLOBULIN (LIGHT CHAIN)' 12636.971 1 ? Q38D ? ? 2 non-polymer syn 'URANYL (VI) ION' 270.028 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 water nat water 18.015 101 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNSKNYLAWYQDKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLT ISSLQAEDVAVYYCQQYYSTPYSFGQGTKLEIKR ; _entity_poly.pdbx_seq_one_letter_code_can ;DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNSKNYLAWYQDKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLT ISSLQAEDVAVYYCQQYYSTPYSFGQGTKLEIKR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 VAL n 1 4 MET n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 ASP n 1 10 SER n 1 11 LEU n 1 12 ALA n 1 13 VAL n 1 14 SER n 1 15 LEU n 1 16 GLY n 1 17 GLU n 1 18 ARG n 1 19 ALA n 1 20 THR n 1 21 ILE n 1 22 ASN n 1 23 CYS n 1 24 LYS n 1 25 SER n 1 26 SER n 1 27 GLN n 1 28 SER n 1 29 VAL n 1 30 LEU n 1 31 TYR n 1 32 SER n 1 33 SER n 1 34 ASN n 1 35 SER n 1 36 LYS n 1 37 ASN n 1 38 TYR n 1 39 LEU n 1 40 ALA n 1 41 TRP n 1 42 TYR n 1 43 GLN n 1 44 ASP n 1 45 LYS n 1 46 PRO n 1 47 GLY n 1 48 GLN n 1 49 PRO n 1 50 PRO n 1 51 LYS n 1 52 LEU n 1 53 LEU n 1 54 ILE n 1 55 TYR n 1 56 TRP n 1 57 ALA n 1 58 SER n 1 59 THR n 1 60 ARG n 1 61 GLU n 1 62 SER n 1 63 GLY n 1 64 VAL n 1 65 PRO n 1 66 ASP n 1 67 ARG n 1 68 PHE n 1 69 SER n 1 70 GLY n 1 71 SER n 1 72 GLY n 1 73 SER n 1 74 GLY n 1 75 THR n 1 76 ASP n 1 77 PHE n 1 78 THR n 1 79 LEU n 1 80 THR n 1 81 ILE n 1 82 SER n 1 83 SER n 1 84 LEU n 1 85 GLN n 1 86 ALA n 1 87 GLU n 1 88 ASP n 1 89 VAL n 1 90 ALA n 1 91 VAL n 1 92 TYR n 1 93 TYR n 1 94 CYS n 1 95 GLN n 1 96 GLN n 1 97 TYR n 1 98 TYR n 1 99 SER n 1 100 THR n 1 101 PRO n 1 102 TYR n 1 103 SER n 1 104 PHE n 1 105 GLY n 1 106 GLN n 1 107 GLY n 1 108 THR n 1 109 LYS n 1 110 LEU n 1 111 GLU n 1 112 ILE n 1 113 LYS n 1 114 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PASK40 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KV4A_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P01625 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLT ISSLQAEDVAVYYCQQYYSTPYSFGQGTKLEIKR ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EFQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01625 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 114 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 108 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1EFQ _struct_ref_seq_dif.mon_id ASP _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 44 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P01625 _struct_ref_seq_dif.db_mon_id GLN _struct_ref_seq_dif.pdbx_seq_db_seq_num 44 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 38 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IUM non-polymer . 'URANYL (VI) ION' ? 'O2 U 2' 270.028 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1EFQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;25% PEG monomethylether 550, 0.01 M zinc sulfate, 0.1 M MES pH 6.5, 0.001M Uranyl Acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 1998-02-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0332 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength 1.0332 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EFQ _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 1.6 _reflns.number_obs 15317 _reflns.number_all 15773 _reflns.percent_possible_obs 97.3 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 16 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.204 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1009 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EFQ _refine.ls_number_reflns_obs 14410 _refine.ls_number_reflns_all 15121 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 10 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2303 _refine.ls_R_factor_R_free 0.2885 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1471 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;Due to the presence of uranyl ion in the crystal there is significant anomalous contribution to the diffraction at 1 Angstrom wavelength. When Friedel pairs are not averaged, the anomalous difference Patterson map calculated clearly showed the position of uranium atom. Using the anomalous data the final model has an R-factor of 0.231 and R-free of 0.264. THE ELECTRON DENSITY INDICATED ANISOROPIC MOTION OF THE URANIUM ATOM. THE POSITIONS OF URANYL OXYGENS WERE NOT CLEAR IN THE ELECTRON DENSITY MAPS. THE OXYGEN ATOMS WERE PLACED ACCORDING TO THE EXPECTED GEOMETRY AROUND THE URANIUM ATOM AND SEEM TO IMPROVE BOTH R-FACTORS. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 857 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 962 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.57 ? ? ? 'X-RAY DIFFRACTION' ? x_torsion_deg 28.3 ? ? ? 'X-RAY DIFFRACTION' ? x_torsion_impr_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1EFQ _struct.title 'Q38D mutant of LEN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EFQ _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text ;Human Kappa-4 Immunoglobulin Light Chain, Mutant, Monomer, Uranyl ion in crystal contact, Aspartic Acid in beta-sheet, Protein Stability, IMMUNE SYSTEM ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;Native Len is a homo-dimer, Whereas the Q38D mutant reported in this entry appears to be a monomer in the crystal. In solution, the association constant of Q38D is 66 times lower than the native Len. ; _struct_biol.pdbx_parent_biol_id ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 85 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id VAL _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 89 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 79 _struct_conf.end_auth_comp_id VAL _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 83 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 23 A CYS 88 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc1 metalc ? ? A ASP 1 N ? ? ? 6_654 C ZN . ZN ? ? A ASP 1 A ZN 200 1_555 ? ? ? ? ? ? ? 2.236 ? ? metalc2 metalc ? ? A ASP 1 OD1 ? ? ? 6_654 C ZN . ZN ? ? A ASP 1 A ZN 200 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc3 metalc ? ? A GLU 61 OE1 ? ? ? 3_665 C ZN . ZN ? ? A GLU 55 A ZN 200 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc4 metalc ? ? A GLU 61 OE2 ? ? ? 3_665 C ZN . ZN ? ? A GLU 55 A ZN 200 1_555 ? ? ? ? ? ? ? 2.561 ? ? metalc5 metalc ? ? A ASP 66 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 60 A ZN 200 1_555 ? ? ? ? ? ? ? 2.067 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 A . ? SER 7 A PRO 8 A ? PRO 8 A 1 -0.44 2 THR 100 A . ? THR 94 A PRO 101 A ? PRO 95 A 1 -0.16 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 4 ? SER A 7 ? MET A 4 SER A 7 A 2 ALA A 19 ? SER A 25 ? ALA A 19 SER A 25 A 3 ASP A 76 ? ILE A 81 ? ASP A 70 ILE A 75 A 4 PHE A 68 ? SER A 73 ? PHE A 62 SER A 67 B 1 THR A 59 ? ARG A 60 ? THR A 53 ARG A 54 B 2 LYS A 51 ? TYR A 55 ? LYS A 45 TYR A 49 B 3 LEU A 39 ? ASP A 44 ? LEU A 33 ASP A 38 B 4 ALA A 90 ? GLN A 96 ? ALA A 84 GLN A 90 B 5 SER A 103 ? PHE A 104 ? SER A 97 PHE A 98 C 1 THR A 59 ? ARG A 60 ? THR A 53 ARG A 54 C 2 LYS A 51 ? TYR A 55 ? LYS A 45 TYR A 49 C 3 LEU A 39 ? ASP A 44 ? LEU A 33 ASP A 38 C 4 ALA A 90 ? GLN A 96 ? ALA A 84 GLN A 90 C 5 THR A 108 ? ILE A 112 ? THR A 102 ILE A 106 C 6 SER A 10 ? VAL A 13 ? SER A 10 VAL A 13 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 7 ? O SER A 7 N ASN A 22 ? N ASN A 22 A 2 3 O CYS A 23 ? O CYS A 23 N PHE A 77 ? N PHE A 71 A 3 4 N THR A 80 ? N THR A 74 O SER A 69 ? O SER A 63 B 1 2 O THR A 59 ? O THR A 53 N TYR A 55 ? N TYR A 49 B 2 3 N LEU A 53 ? N LEU A 47 O TRP A 41 ? O TRP A 35 B 3 4 N ASP A 44 ? N ASP A 38 O VAL A 91 ? O VAL A 85 B 4 5 N GLN A 96 ? N GLN A 90 O SER A 103 ? O SER A 97 C 1 2 O THR A 59 ? O THR A 53 N TYR A 55 ? N TYR A 49 C 2 3 N LEU A 53 ? N LEU A 47 O TRP A 41 ? O TRP A 35 C 3 4 N ASP A 44 ? N ASP A 38 O VAL A 91 ? O VAL A 85 C 4 5 N TYR A 92 ? N TYR A 86 O THR A 108 ? O THR A 102 C 5 6 N GLU A 111 ? N GLU A 105 O LEU A 11 ? O LEU A 11 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IUM 199 ? 8 'BINDING SITE FOR RESIDUE IUM A 199' AC2 Software A ZN 200 ? 4 'BINDING SITE FOR RESIDUE ZN A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TYR A 31 D TYR A 27 . ? 4_664 ? 2 AC1 8 ASP A 44 ? ASP A 38 . ? 1_555 ? 3 AC1 8 LYS A 45 ? LYS A 39 . ? 1_555 ? 4 AC1 8 GLY A 47 ? GLY A 41 . ? 1_555 ? 5 AC1 8 GLN A 48 ? GLN A 42 . ? 1_555 ? 6 AC1 8 PRO A 50 ? PRO A 44 . ? 1_555 ? 7 AC1 8 HOH D . ? HOH A 224 . ? 1_555 ? 8 AC1 8 HOH D . ? HOH A 265 . ? 1_555 ? 9 AC2 4 ASP A 1 ? ASP A 1 . ? 6_654 ? 10 AC2 4 GLU A 61 ? GLU A 55 . ? 3_665 ? 11 AC2 4 ASP A 66 ? ASP A 60 . ? 1_555 ? 12 AC2 4 HOH D . ? HOH A 240 . ? 3_665 ? # _database_PDB_matrix.entry_id 1EFQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EFQ _atom_sites.fract_transf_matrix[1][1] 0.015198 _atom_sites.fract_transf_matrix[1][2] 0.008774 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017549 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020790 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S U ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 MET 4 4 4 MET MET A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 SER 28 27 27 SER SER A A n A 1 29 VAL 29 27 27 VAL VAL A B n A 1 30 LEU 30 27 27 LEU LEU A C n A 1 31 TYR 31 27 27 TYR TYR A D n A 1 32 SER 32 27 27 SER SER A E n A 1 33 SER 33 27 27 SER SER A F n A 1 34 ASN 34 28 28 ASN ASN A . n A 1 35 SER 35 29 29 SER SER A . n A 1 36 LYS 36 30 30 LYS LYS A . n A 1 37 ASN 37 31 31 ASN ASN A . n A 1 38 TYR 38 32 32 TYR TYR A . n A 1 39 LEU 39 33 33 LEU LEU A . n A 1 40 ALA 40 34 34 ALA ALA A . n A 1 41 TRP 41 35 35 TRP TRP A . n A 1 42 TYR 42 36 36 TYR TYR A . n A 1 43 GLN 43 37 37 GLN GLN A . n A 1 44 ASP 44 38 38 ASP ASP A . n A 1 45 LYS 45 39 39 LYS LYS A . n A 1 46 PRO 46 40 40 PRO PRO A . n A 1 47 GLY 47 41 41 GLY GLY A . n A 1 48 GLN 48 42 42 GLN GLN A . n A 1 49 PRO 49 43 43 PRO PRO A . n A 1 50 PRO 50 44 44 PRO PRO A . n A 1 51 LYS 51 45 45 LYS LYS A . n A 1 52 LEU 52 46 46 LEU LEU A . n A 1 53 LEU 53 47 47 LEU LEU A . n A 1 54 ILE 54 48 48 ILE ILE A . n A 1 55 TYR 55 49 49 TYR TYR A . n A 1 56 TRP 56 50 50 TRP TRP A . n A 1 57 ALA 57 51 51 ALA ALA A . n A 1 58 SER 58 52 52 SER SER A . n A 1 59 THR 59 53 53 THR THR A . n A 1 60 ARG 60 54 54 ARG ARG A . n A 1 61 GLU 61 55 55 GLU GLU A . n A 1 62 SER 62 56 56 SER SER A . n A 1 63 GLY 63 57 57 GLY GLY A . n A 1 64 VAL 64 58 58 VAL VAL A . n A 1 65 PRO 65 59 59 PRO PRO A . n A 1 66 ASP 66 60 60 ASP ASP A . n A 1 67 ARG 67 61 61 ARG ARG A . n A 1 68 PHE 68 62 62 PHE PHE A . n A 1 69 SER 69 63 63 SER SER A . n A 1 70 GLY 70 64 64 GLY GLY A . n A 1 71 SER 71 65 65 SER SER A . n A 1 72 GLY 72 66 66 GLY GLY A . n A 1 73 SER 73 67 67 SER SER A . n A 1 74 GLY 74 68 68 GLY GLY A . n A 1 75 THR 75 69 69 THR THR A . n A 1 76 ASP 76 70 70 ASP ASP A . n A 1 77 PHE 77 71 71 PHE PHE A . n A 1 78 THR 78 72 72 THR THR A . n A 1 79 LEU 79 73 73 LEU LEU A . n A 1 80 THR 80 74 74 THR THR A . n A 1 81 ILE 81 75 75 ILE ILE A . n A 1 82 SER 82 76 76 SER SER A . n A 1 83 SER 83 77 77 SER SER A . n A 1 84 LEU 84 78 78 LEU LEU A . n A 1 85 GLN 85 79 79 GLN GLN A . n A 1 86 ALA 86 80 80 ALA ALA A . n A 1 87 GLU 87 81 81 GLU GLU A . n A 1 88 ASP 88 82 82 ASP ASP A . n A 1 89 VAL 89 83 83 VAL VAL A . n A 1 90 ALA 90 84 84 ALA ALA A . n A 1 91 VAL 91 85 85 VAL VAL A . n A 1 92 TYR 92 86 86 TYR TYR A . n A 1 93 TYR 93 87 87 TYR TYR A . n A 1 94 CYS 94 88 88 CYS CYS A . n A 1 95 GLN 95 89 89 GLN GLN A . n A 1 96 GLN 96 90 90 GLN GLN A . n A 1 97 TYR 97 91 91 TYR TYR A . n A 1 98 TYR 98 92 92 TYR TYR A . n A 1 99 SER 99 93 93 SER SER A . n A 1 100 THR 100 94 94 THR THR A . n A 1 101 PRO 101 95 95 PRO PRO A . n A 1 102 TYR 102 96 96 TYR TYR A . n A 1 103 SER 103 97 97 SER SER A . n A 1 104 PHE 104 98 98 PHE PHE A . n A 1 105 GLY 105 99 99 GLY GLY A . n A 1 106 GLN 106 100 100 GLN GLN A . n A 1 107 GLY 107 101 101 GLY GLY A . n A 1 108 THR 108 102 102 THR THR A . n A 1 109 LYS 109 103 103 LYS LYS A . n A 1 110 LEU 110 104 104 LEU LEU A . n A 1 111 GLU 111 105 105 GLU GLU A . n A 1 112 ILE 112 106 106 ILE ILE A . n A 1 113 LYS 113 107 107 LYS LYS A . n A 1 114 ARG 114 108 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IUM 1 199 199 IUM IUM A . C 3 ZN 1 200 200 ZN ZN A . D 4 HOH 1 201 201 HOH WAT A . D 4 HOH 2 202 202 HOH WAT A . D 4 HOH 3 203 203 HOH WAT A . D 4 HOH 4 204 204 HOH WAT A . D 4 HOH 5 205 205 HOH WAT A . D 4 HOH 6 206 206 HOH WAT A . D 4 HOH 7 207 207 HOH WAT A . D 4 HOH 8 208 208 HOH WAT A . D 4 HOH 9 209 209 HOH WAT A . D 4 HOH 10 210 210 HOH WAT A . D 4 HOH 11 211 211 HOH WAT A . D 4 HOH 12 212 212 HOH WAT A . D 4 HOH 13 213 213 HOH WAT A . D 4 HOH 14 214 214 HOH WAT A . D 4 HOH 15 215 215 HOH WAT A . D 4 HOH 16 216 216 HOH WAT A . D 4 HOH 17 217 217 HOH WAT A . D 4 HOH 18 218 218 HOH WAT A . D 4 HOH 19 219 219 HOH WAT A . D 4 HOH 20 220 220 HOH WAT A . D 4 HOH 21 221 221 HOH WAT A . D 4 HOH 22 222 222 HOH WAT A . D 4 HOH 23 223 223 HOH WAT A . D 4 HOH 24 224 224 HOH WAT A . D 4 HOH 25 225 225 HOH WAT A . D 4 HOH 26 226 226 HOH WAT A . D 4 HOH 27 227 227 HOH WAT A . D 4 HOH 28 228 228 HOH WAT A . D 4 HOH 29 229 229 HOH WAT A . D 4 HOH 30 230 230 HOH WAT A . D 4 HOH 31 231 231 HOH WAT A . D 4 HOH 32 232 232 HOH WAT A . D 4 HOH 33 233 233 HOH WAT A . D 4 HOH 34 234 234 HOH WAT A . D 4 HOH 35 235 235 HOH WAT A . D 4 HOH 36 236 236 HOH WAT A . D 4 HOH 37 237 237 HOH WAT A . D 4 HOH 38 238 238 HOH WAT A . D 4 HOH 39 239 239 HOH WAT A . D 4 HOH 40 240 240 HOH WAT A . D 4 HOH 41 241 241 HOH WAT A . D 4 HOH 42 242 242 HOH WAT A . D 4 HOH 43 243 243 HOH WAT A . D 4 HOH 44 244 244 HOH WAT A . D 4 HOH 45 245 245 HOH WAT A . D 4 HOH 46 246 246 HOH WAT A . D 4 HOH 47 247 247 HOH WAT A . D 4 HOH 48 248 248 HOH WAT A . D 4 HOH 49 249 249 HOH WAT A . D 4 HOH 50 250 250 HOH WAT A . D 4 HOH 51 251 251 HOH WAT A . D 4 HOH 52 252 252 HOH WAT A . D 4 HOH 53 253 253 HOH WAT A . D 4 HOH 54 254 254 HOH WAT A . D 4 HOH 55 255 255 HOH WAT A . D 4 HOH 56 256 256 HOH WAT A . D 4 HOH 57 257 257 HOH WAT A . D 4 HOH 58 258 258 HOH WAT A . D 4 HOH 59 259 259 HOH WAT A . D 4 HOH 60 260 260 HOH WAT A . D 4 HOH 61 261 261 HOH WAT A . D 4 HOH 62 262 262 HOH WAT A . D 4 HOH 63 263 263 HOH WAT A . D 4 HOH 64 264 264 HOH WAT A . D 4 HOH 65 265 265 HOH WAT A . D 4 HOH 66 266 266 HOH WAT A . D 4 HOH 67 267 267 HOH WAT A . D 4 HOH 68 268 268 HOH WAT A . D 4 HOH 69 269 269 HOH WAT A . D 4 HOH 70 270 270 HOH WAT A . D 4 HOH 71 271 271 HOH WAT A . D 4 HOH 72 272 272 HOH WAT A . D 4 HOH 73 273 273 HOH WAT A . D 4 HOH 74 274 274 HOH WAT A . D 4 HOH 75 275 275 HOH WAT A . D 4 HOH 76 276 276 HOH WAT A . D 4 HOH 77 277 277 HOH WAT A . D 4 HOH 78 278 278 HOH WAT A . D 4 HOH 79 279 279 HOH WAT A . D 4 HOH 80 280 280 HOH WAT A . D 4 HOH 81 281 281 HOH WAT A . D 4 HOH 82 282 282 HOH WAT A . D 4 HOH 83 283 283 HOH WAT A . D 4 HOH 84 284 284 HOH WAT A . D 4 HOH 85 285 285 HOH WAT A . D 4 HOH 86 286 286 HOH WAT A . D 4 HOH 87 287 287 HOH WAT A . D 4 HOH 88 288 288 HOH WAT A . D 4 HOH 89 289 289 HOH WAT A . D 4 HOH 90 290 290 HOH WAT A . D 4 HOH 91 291 291 HOH WAT A . D 4 HOH 92 292 292 HOH WAT A . D 4 HOH 93 293 293 HOH WAT A . D 4 HOH 94 294 294 HOH WAT A . D 4 HOH 95 295 295 HOH WAT A . D 4 HOH 96 296 296 HOH WAT A . D 4 HOH 97 297 297 HOH WAT A . D 4 HOH 98 298 298 HOH WAT A . D 4 HOH 99 299 299 HOH WAT A . D 4 HOH 100 300 300 HOH WAT A . D 4 HOH 101 301 301 HOH WAT A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A ASP 1 ? A ASP 1 ? 6_654 ZN ? C ZN . ? A ZN 200 ? 1_555 OD1 ? A ASP 1 ? A ASP 1 ? 6_654 90.0 ? 2 N ? A ASP 1 ? A ASP 1 ? 6_654 ZN ? C ZN . ? A ZN 200 ? 1_555 OE1 ? A GLU 61 ? A GLU 55 ? 3_665 126.4 ? 3 OD1 ? A ASP 1 ? A ASP 1 ? 6_654 ZN ? C ZN . ? A ZN 200 ? 1_555 OE1 ? A GLU 61 ? A GLU 55 ? 3_665 87.6 ? 4 N ? A ASP 1 ? A ASP 1 ? 6_654 ZN ? C ZN . ? A ZN 200 ? 1_555 OE2 ? A GLU 61 ? A GLU 55 ? 3_665 93.9 ? 5 OD1 ? A ASP 1 ? A ASP 1 ? 6_654 ZN ? C ZN . ? A ZN 200 ? 1_555 OE2 ? A GLU 61 ? A GLU 55 ? 3_665 135.6 ? 6 OE1 ? A GLU 61 ? A GLU 55 ? 3_665 ZN ? C ZN . ? A ZN 200 ? 1_555 OE2 ? A GLU 61 ? A GLU 55 ? 3_665 55.2 ? 7 N ? A ASP 1 ? A ASP 1 ? 6_654 ZN ? C ZN . ? A ZN 200 ? 1_555 OD2 ? A ASP 66 ? A ASP 60 ? 1_555 121.6 ? 8 OD1 ? A ASP 1 ? A ASP 1 ? 6_654 ZN ? C ZN . ? A ZN 200 ? 1_555 OD2 ? A ASP 66 ? A ASP 60 ? 1_555 107.5 ? 9 OE1 ? A GLU 61 ? A GLU 55 ? 3_665 ZN ? C ZN . ? A ZN 200 ? 1_555 OD2 ? A ASP 66 ? A ASP 60 ? 1_555 110.1 ? 10 OE2 ? A GLU 61 ? A GLU 55 ? 3_665 ZN ? C ZN . ? A ZN 200 ? 1_555 OD2 ? A ASP 66 ? A ASP 60 ? 1_555 107.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-02-09 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_symmetry' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_symmetry' 31 4 'Structure model' '_struct_ref_seq_dif.details' 32 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 X-PLOR refinement 3.1 ? 4 # _pdbx_entry_details.entry_id 1EFQ _pdbx_entry_details.compound_details ;Native Len is a homo-dimer, whereas the Q38D mutant reported in this entry appears to be a monomer in the crystal. In solution, the association constant of Q38D is 66 times lower than the native Len. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 51 ? ? 67.97 -28.25 2 1 ASP A 60 ? ? -65.84 0.32 3 1 SER A 77 ? ? 61.36 82.57 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 9 ? CG ? A ASP 9 CG 2 1 Y 1 A ASP 9 ? OD1 ? A ASP 9 OD1 3 1 Y 1 A ASP 9 ? OD2 ? A ASP 9 OD2 4 1 Y 1 A SER 10 ? OG ? A SER 10 OG 5 1 Y 1 A VAL 13 ? CG1 ? A VAL 13 CG1 6 1 Y 1 A VAL 13 ? CG2 ? A VAL 13 CG2 7 1 Y 1 A ARG 18 ? CG ? A ARG 18 CG 8 1 Y 1 A ARG 18 ? CD ? A ARG 18 CD 9 1 Y 1 A ARG 18 ? NE ? A ARG 18 NE 10 1 Y 1 A ARG 18 ? CZ ? A ARG 18 CZ 11 1 Y 1 A ARG 18 ? NH1 ? A ARG 18 NH1 12 1 Y 1 A ARG 18 ? NH2 ? A ARG 18 NH2 13 1 Y 1 A THR 20 ? OG1 ? A THR 20 OG1 14 1 Y 1 A THR 20 ? CG2 ? A THR 20 CG2 15 1 Y 1 A SER 56 ? OG ? A SER 62 OG 16 1 Y 1 A LEU 78 ? CG ? A LEU 84 CG 17 1 Y 1 A LEU 78 ? CD1 ? A LEU 84 CD1 18 1 Y 1 A LEU 78 ? CD2 ? A LEU 84 CD2 19 1 Y 1 A ILE 106 ? CG1 ? A ILE 112 CG1 20 1 Y 1 A ILE 106 ? CG2 ? A ILE 112 CG2 21 1 Y 1 A ILE 106 ? CD1 ? A ILE 112 CD1 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ARG _pdbx_unobs_or_zero_occ_residues.auth_seq_id 108 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ARG _pdbx_unobs_or_zero_occ_residues.label_seq_id 114 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'URANYL (VI) ION' IUM 3 'ZINC ION' ZN 4 water HOH #