data_1EG6 # _entry.id 1EG6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EG6 pdb_00001eg6 10.2210/pdb1eg6/pdb NDB DD0026 ? ? RCSB RCSB010543 ? ? WWPDB D_1000010543 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-01-03 2 'Structure model' 1 1 2007-10-16 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.value' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EG6 _pdbx_database_status.recvd_initial_deposition_date 2000-02-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cardin, C.J.' 1 'Denny, W.A.' 2 'Hobbs, J.R.' 3 'Thorpe, J.H.' 4 # _citation.id primary _citation.title 'Guanine specific binding at a DNA junction formed by d[CG(5-BrU)ACG](2) with a topoisomerase poison in the presence of Co(2+) ions.' _citation.journal_abbrev Biochemistry _citation.journal_volume 39 _citation.page_first 15055 _citation.page_last 15061 _citation.year 2000 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11106483 _citation.pdbx_database_id_DOI 10.1021/bi001749p # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thorpe, J.H.' 1 ? primary 'Hobbs, J.R.' 2 ? primary 'Todd, A.K.' 3 ? primary 'Denny, W.A.' 4 ? primary 'Charlton, P.' 5 ? primary 'Cardin, C.J.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*(BRO)UP*AP*CP*G)-3'" 1795.191 2 ? ? ? ? 2 non-polymer syn 'COBALT (III) ION' 58.933 2 ? ? ? ? 3 non-polymer syn 'BROMIDE ION' 79.904 2 ? ? ? ? 4 non-polymer syn '9-BROMO-PHENAZINE-1-CARBOXYLIC ACID (2-DIMETHYLAMINO-ETHYL)-AMIDE' 373.247 1 ? ? ? ? 5 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DU)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGUACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (III) ION' 3CO 3 'BROMIDE ION' BR 4 '9-BROMO-PHENAZINE-1-CARBOXYLIC ACID (2-DIMETHYLAMINO-ETHYL)-AMIDE' BFA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DU n 1 4 DA n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3CO non-polymer . 'COBALT (III) ION' ? 'Co 3' 58.933 BFA non-polymer . '9-BROMO-PHENAZINE-1-CARBOXYLIC ACID (2-DIMETHYLAMINO-ETHYL)-AMIDE' ? 'C17 H17 Br N4 O' 373.247 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DU 'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DU 3 3 3 DU U A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 1 ? ? ? B . n B 1 2 DG 2 2 2 DG G B . n B 1 3 DU 3 3 3 DU U B . n B 1 4 DA 4 4 4 DA A B . n B 1 5 DC 5 5 5 DC C B . n B 1 6 DG 6 6 6 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3CO 1 40 40 3CO 3CO A . D 3 BR 1 41 3 BR BRO A . E 2 3CO 1 43 43 3CO 3CO B . F 3 BR 1 44 3 BR BRO B . G 4 BFA 1 50 50 BFA BFA B . H 5 HOH 1 42 41 HOH HOH A . H 5 HOH 2 43 42 HOH HOH A . H 5 HOH 3 44 1 HOH HOH A . H 5 HOH 4 45 2 HOH HOH A . H 5 HOH 5 46 6 HOH HOH A . H 5 HOH 6 47 7 HOH HOH A . H 5 HOH 7 48 9 HOH HOH A . H 5 HOH 8 49 11 HOH HOH A . H 5 HOH 9 50 15 HOH HOH A . H 5 HOH 10 51 16 HOH HOH A . H 5 HOH 11 52 21 HOH HOH A . H 5 HOH 12 53 25 HOH HOH A . H 5 HOH 13 54 29 HOH HOH A . H 5 HOH 14 55 31 HOH HOH A . H 5 HOH 15 56 32 HOH HOH A . H 5 HOH 16 57 33 HOH HOH A . I 5 HOH 1 51 44 HOH HOH B . I 5 HOH 2 52 45 HOH HOH B . I 5 HOH 3 53 46 HOH HOH B . I 5 HOH 4 54 47 HOH HOH B . I 5 HOH 5 55 48 HOH HOH B . I 5 HOH 6 56 3 HOH HOH B . I 5 HOH 7 57 4 HOH HOH B . I 5 HOH 8 58 10 HOH HOH B . I 5 HOH 9 59 12 HOH HOH B . I 5 HOH 10 60 13 HOH HOH B . I 5 HOH 11 61 14 HOH HOH B . I 5 HOH 12 62 17 HOH HOH B . I 5 HOH 13 63 18 HOH HOH B . I 5 HOH 14 64 19 HOH HOH B . I 5 HOH 15 65 20 HOH HOH B . I 5 HOH 16 66 22 HOH HOH B . I 5 HOH 17 67 24 HOH HOH B . I 5 HOH 18 68 26 HOH HOH B . I 5 HOH 19 69 27 HOH HOH B . I 5 HOH 20 70 28 HOH HOH B . I 5 HOH 21 71 30 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 # _cell.entry_id 1EG6 _cell.length_a 29.420 _cell.length_b 53.440 _cell.length_c 41.320 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EG6 _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 21 # _exptl.entry_id 1EG6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.71 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 279 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;DROP: SODIUM CACODYLATE BUFFER, MAGNESIUM ACETATE, COBALT CHLORIDE, SPERMINE, MPD RESERVOIR: MPD, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 279K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 'MAGNESIUM ACETATE' ? ? ? 1 3 1 CoCl3 ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 MPD ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-12-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength 0.9000 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EG6 _reflns.observed_criterion_sigma_I 2. _reflns.observed_criterion_sigma_F 4. _reflns.d_resolution_low 15.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 1566 _reflns.number_all 2360 _reflns.percent_possible_obs 78.8 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.35 _reflns.B_iso_Wilson_estimate 29.312 _reflns.pdbx_redundancy 4.79 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 72.6 _reflns_shell.Rmerge_I_obs 0.026 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.29 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EG6 _refine.ls_number_reflns_obs 1566 _refine.ls_number_reflns_all 2091 _refine.pdbx_ls_sigma_I 2. _refine.pdbx_ls_sigma_F 4. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 78.81 _refine.ls_R_factor_obs 0.2276 _refine.ls_R_factor_all 0.2501 _refine.ls_R_factor_R_work 0.2276 _refine.ls_R_factor_R_free 0.3469 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.6 _refine.ls_number_reflns_R_free 104 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 0 _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 222 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 309 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 15.00 # _database_PDB_matrix.entry_id 1EG6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EG6 _struct.title 'CRYSTAL STRUCTURE ANALYSIS OF D(CG(5-BRU)ACG) COMPLEXES TO A PHENAZINE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EG6 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DRUG-DNA COMPLEX, INTERCALATION, MAJOR GROOVE BINDING, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1EG6 _struct_ref.pdbx_db_accession 1EG6 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EG6 A 1 ? 6 ? 1EG6 1 ? 6 ? 1 6 2 1 1EG6 B 1 ? 6 ? 1EG6 1 ? 6 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 C 3CO . CO ? ? A DG 6 A 3CO 40 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc2 metalc ? ? C 3CO . CO ? ? ? 1_555 H HOH . O ? ? A 3CO 40 A HOH 42 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc3 metalc ? ? C 3CO . CO ? ? ? 1_555 H HOH . O ? ? A 3CO 40 A HOH 43 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc4 metalc ? ? B DG 2 N7 ? ? ? 1_555 E 3CO . CO ? ? B DG 2 B 3CO 43 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc5 metalc ? ? E 3CO . CO ? ? ? 1_555 I HOH . O ? ? B 3CO 43 B HOH 51 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc6 metalc ? ? E 3CO . CO ? ? ? 1_555 I HOH . O ? ? B 3CO 43 B HOH 52 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc7 metalc ? ? E 3CO . CO ? ? ? 1_555 I HOH . O ? ? B 3CO 43 B HOH 53 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc8 metalc ? ? E 3CO . CO ? ? ? 1_555 I HOH . O ? ? B 3CO 43 B HOH 54 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc9 metalc ? ? E 3CO . CO ? ? ? 1_555 I HOH . O ? ? B 3CO 43 B HOH 55 1_555 ? ? ? ? ? ? ? 2.106 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DU 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DU 3 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DU 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DU 3 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DU 3 N3 ? ? A DA 4 B DU 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DU 3 O4 ? ? A DA 4 B DU 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 6 ? A DG 6 ? 1_555 CO ? C 3CO . ? A 3CO 40 ? 1_555 O ? H HOH . ? A HOH 42 ? 1_555 81.0 ? 2 N7 ? A DG 6 ? A DG 6 ? 1_555 CO ? C 3CO . ? A 3CO 40 ? 1_555 O ? H HOH . ? A HOH 43 ? 1_555 90.1 ? 3 O ? H HOH . ? A HOH 42 ? 1_555 CO ? C 3CO . ? A 3CO 40 ? 1_555 O ? H HOH . ? A HOH 43 ? 1_555 88.0 ? 4 N7 ? B DG 2 ? B DG 2 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 51 ? 1_555 101.0 ? 5 N7 ? B DG 2 ? B DG 2 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 52 ? 1_555 100.1 ? 6 O ? I HOH . ? B HOH 51 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 52 ? 1_555 157.6 ? 7 N7 ? B DG 2 ? B DG 2 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 53 ? 1_555 175.7 ? 8 O ? I HOH . ? B HOH 51 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 53 ? 1_555 77.8 ? 9 O ? I HOH . ? B HOH 52 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 53 ? 1_555 81.7 ? 10 N7 ? B DG 2 ? B DG 2 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 54 ? 1_555 94.7 ? 11 O ? I HOH . ? B HOH 51 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 54 ? 1_555 97.9 ? 12 O ? I HOH . ? B HOH 52 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 54 ? 1_555 87.7 ? 13 O ? I HOH . ? B HOH 53 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 54 ? 1_555 81.5 ? 14 N7 ? B DG 2 ? B DG 2 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 55 ? 1_555 75.2 ? 15 O ? I HOH . ? B HOH 51 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 55 ? 1_555 99.1 ? 16 O ? I HOH . ? B HOH 52 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 55 ? 1_555 79.2 ? 17 O ? I HOH . ? B HOH 53 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 55 ? 1_555 109.0 ? 18 O ? I HOH . ? B HOH 54 ? 1_555 CO ? E 3CO . ? B 3CO 43 ? 1_555 O ? I HOH . ? B HOH 55 ? 1_555 161.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3CO 40 ? 6 'BINDING SITE FOR RESIDUE 3CO A 40' AC2 Software B 3CO 43 ? 6 'BINDING SITE FOR RESIDUE 3CO B 43' AC3 Software A BR 41 ? 3 'BINDING SITE FOR RESIDUE BR A 41' AC4 Software B BR 44 ? 2 'BINDING SITE FOR RESIDUE BR B 44' AC5 Software B BFA 50 ? 8 'BINDING SITE FOR RESIDUE BFA B 50' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 6 ? DG A 6 . ? 1_555 ? 2 AC1 6 DG A 6 ? DG A 6 . ? 3_656 ? 3 AC1 6 HOH H . ? HOH A 42 . ? 3_656 ? 4 AC1 6 HOH H . ? HOH A 42 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH A 43 . ? 3_656 ? 6 AC1 6 HOH H . ? HOH A 43 . ? 1_555 ? 7 AC2 6 DG B 2 ? DG B 2 . ? 1_555 ? 8 AC2 6 HOH I . ? HOH B 51 . ? 1_555 ? 9 AC2 6 HOH I . ? HOH B 52 . ? 1_555 ? 10 AC2 6 HOH I . ? HOH B 53 . ? 1_555 ? 11 AC2 6 HOH I . ? HOH B 54 . ? 1_555 ? 12 AC2 6 HOH I . ? HOH B 55 . ? 1_555 ? 13 AC3 3 DG A 2 ? DG A 2 . ? 1_555 ? 14 AC3 3 DU A 3 ? DU A 3 . ? 1_555 ? 15 AC3 3 HOH H . ? HOH A 49 . ? 1_555 ? 16 AC4 2 DG B 2 ? DG B 2 . ? 1_555 ? 17 AC4 2 DU B 3 ? DU B 3 . ? 1_555 ? 18 AC5 8 DC A 1 ? DC A 1 . ? 3_555 ? 19 AC5 8 DG A 2 ? DG A 2 . ? 1_555 ? 20 AC5 8 DG A 2 ? DG A 2 . ? 2_565 ? 21 AC5 8 DA A 4 ? DA A 4 . ? 2_565 ? 22 AC5 8 DC B 5 ? DC B 5 . ? 1_555 ? 23 AC5 8 DG B 6 ? DG B 6 . ? 1_555 ? 24 AC5 8 HOH I . ? HOH B 62 . ? 1_555 ? 25 AC5 8 HOH I . ? HOH B 65 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C5 A DU 3 ? ? BR A BR 41 ? ? 1.96 2 1 C5 B DU 3 ? ? BR B BR 44 ? ? 1.96 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C1'" A DG 2 ? ? N9 A DG 2 ? ? 1.587 1.488 0.099 0.013 N 2 1 "O4'" A DU 3 ? ? "C1'" A DU 3 ? ? 1.492 1.420 0.072 0.011 N 3 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? 1.488 1.420 0.068 0.011 N 4 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.494 1.420 0.074 0.011 N 5 1 "C1'" A DG 6 ? ? N9 A DG 6 ? ? 1.591 1.488 0.103 0.013 N 6 1 "C1'" B DG 2 ? ? N9 B DG 2 ? ? 1.567 1.488 0.079 0.013 N 7 1 "O4'" B DU 3 ? ? "C1'" B DU 3 ? ? 1.486 1.420 0.066 0.011 N 8 1 "C1'" B DG 6 ? ? N9 B DG 6 ? ? 1.569 1.488 0.081 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 123.97 114.30 9.67 1.40 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 102.35 108.00 -5.65 0.70 N 3 1 P A DU 3 ? ? "O5'" A DU 3 ? ? "C5'" A DU 3 ? ? 132.22 120.90 11.32 1.60 N 4 1 "C5'" A DU 3 ? ? "C4'" A DU 3 ? ? "O4'" A DU 3 ? ? 117.17 109.80 7.37 1.10 N 5 1 C5 A DU 3 ? ? C4 A DU 3 ? ? O4 A DU 3 ? ? 121.85 125.90 -4.05 0.60 N 6 1 "C3'" A DU 3 ? ? "O3'" A DU 3 ? ? P A DA 4 ? ? 137.37 119.70 17.67 1.20 Y 7 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 103.35 108.00 -4.65 0.70 N 8 1 N1 A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 128.79 114.30 14.49 1.40 N 9 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 128.73 119.70 9.03 1.20 Y 10 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 100.31 108.00 -7.69 0.70 N 11 1 N9 B DG 2 ? ? "C1'" B DG 2 ? ? "C2'" B DG 2 ? ? 124.16 114.30 9.86 1.40 N 12 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 98.48 108.00 -9.52 0.70 N 13 1 N1 B DU 3 ? ? "C1'" B DU 3 ? ? "C2'" B DU 3 ? ? 130.05 114.30 15.75 1.40 N 14 1 "C3'" B DU 3 ? ? "O3'" B DU 3 ? ? P B DA 4 ? ? 129.75 119.70 10.05 1.20 Y 15 1 N9 B DA 4 ? ? "C1'" B DA 4 ? ? "C2'" B DA 4 ? ? 122.90 114.30 8.60 1.40 N 16 1 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 110.16 108.30 1.86 0.30 N 17 1 C2 B DA 4 ? ? N3 B DA 4 ? ? C4 B DA 4 ? ? 113.93 110.60 3.33 0.50 N 18 1 "C3'" B DA 4 ? ? "O3'" B DA 4 ? ? P B DC 5 ? ? 135.41 119.70 15.71 1.20 Y 19 1 P B DC 5 ? ? "O5'" B DC 5 ? ? "C5'" B DC 5 ? ? 134.30 120.90 13.40 1.60 N 20 1 C6 B DC 5 ? ? N1 B DC 5 ? ? C2 B DC 5 ? ? 123.04 120.30 2.74 0.40 N 21 1 P B DG 6 ? ? "O5'" B DG 6 ? ? "C5'" B DG 6 ? ? 130.53 120.90 9.63 1.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'INTERCALATION, GROOVE BINDER' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A 3CO 40 ? C 3CO . 2 1 B BFA 50 ? G BFA . 3 1 A HOH 56 ? H HOH . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id DC _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id DC _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3CO CO CO N N 1 BFA BR BR N N 2 BFA C4 C Y N 3 BFA C3 C Y N 4 BFA C2 C Y N 5 BFA C1 C Y N 6 BFA N9 N Y N 7 BFA C8 C Y N 8 BFA C7 C Y N 9 BFA C6 C Y N 10 BFA C5 C Y N 11 BFA C12 C Y N 12 BFA C11 C Y N 13 BFA C13 C Y N 14 BFA C14 C Y N 15 BFA N10 N Y N 16 BFA CD1 C N N 17 BFA OD1 O N N 18 BFA ND1 N N N 19 BFA CD2 C N N 20 BFA CD3 C N N 21 BFA ND2 N N N 22 BFA CD7 C N N 23 BFA CD8 C N N 24 BFA H3 H N N 25 BFA H2 H N N 26 BFA H1 H N N 27 BFA H8 H N N 28 BFA H7 H N N 29 BFA H6 H N N 30 BFA HN1 H N N 31 BFA HD21 H N N 32 BFA HD22 H N N 33 BFA HD31 H N N 34 BFA HD32 H N N 35 BFA HD71 H N N 36 BFA HD72 H N N 37 BFA HD73 H N N 38 BFA HD81 H N N 39 BFA HD82 H N N 40 BFA HD83 H N N 41 BR BR BR N N 42 DA OP3 O N N 43 DA P P N N 44 DA OP1 O N N 45 DA OP2 O N N 46 DA "O5'" O N N 47 DA "C5'" C N N 48 DA "C4'" C N R 49 DA "O4'" O N N 50 DA "C3'" C N S 51 DA "O3'" O N N 52 DA "C2'" C N N 53 DA "C1'" C N R 54 DA N9 N Y N 55 DA C8 C Y N 56 DA N7 N Y N 57 DA C5 C Y N 58 DA C6 C Y N 59 DA N6 N N N 60 DA N1 N Y N 61 DA C2 C Y N 62 DA N3 N Y N 63 DA C4 C Y N 64 DA HOP3 H N N 65 DA HOP2 H N N 66 DA "H5'" H N N 67 DA "H5''" H N N 68 DA "H4'" H N N 69 DA "H3'" H N N 70 DA "HO3'" H N N 71 DA "H2'" H N N 72 DA "H2''" H N N 73 DA "H1'" H N N 74 DA H8 H N N 75 DA H61 H N N 76 DA H62 H N N 77 DA H2 H N N 78 DC OP3 O N N 79 DC P P N N 80 DC OP1 O N N 81 DC OP2 O N N 82 DC "O5'" O N N 83 DC "C5'" C N N 84 DC "C4'" C N R 85 DC "O4'" O N N 86 DC "C3'" C N S 87 DC "O3'" O N N 88 DC "C2'" C N N 89 DC "C1'" C N R 90 DC N1 N N N 91 DC C2 C N N 92 DC O2 O N N 93 DC N3 N N N 94 DC C4 C N N 95 DC N4 N N N 96 DC C5 C N N 97 DC C6 C N N 98 DC HOP3 H N N 99 DC HOP2 H N N 100 DC "H5'" H N N 101 DC "H5''" H N N 102 DC "H4'" H N N 103 DC "H3'" H N N 104 DC "HO3'" H N N 105 DC "H2'" H N N 106 DC "H2''" H N N 107 DC "H1'" H N N 108 DC H41 H N N 109 DC H42 H N N 110 DC H5 H N N 111 DC H6 H N N 112 DG OP3 O N N 113 DG P P N N 114 DG OP1 O N N 115 DG OP2 O N N 116 DG "O5'" O N N 117 DG "C5'" C N N 118 DG "C4'" C N R 119 DG "O4'" O N N 120 DG "C3'" C N S 121 DG "O3'" O N N 122 DG "C2'" C N N 123 DG "C1'" C N R 124 DG N9 N Y N 125 DG C8 C Y N 126 DG N7 N Y N 127 DG C5 C Y N 128 DG C6 C N N 129 DG O6 O N N 130 DG N1 N N N 131 DG C2 C N N 132 DG N2 N N N 133 DG N3 N N N 134 DG C4 C Y N 135 DG HOP3 H N N 136 DG HOP2 H N N 137 DG "H5'" H N N 138 DG "H5''" H N N 139 DG "H4'" H N N 140 DG "H3'" H N N 141 DG "HO3'" H N N 142 DG "H2'" H N N 143 DG "H2''" H N N 144 DG "H1'" H N N 145 DG H8 H N N 146 DG H1 H N N 147 DG H21 H N N 148 DG H22 H N N 149 DU OP3 O N N 150 DU P P N N 151 DU OP1 O N N 152 DU OP2 O N N 153 DU "O5'" O N N 154 DU "C5'" C N N 155 DU "C4'" C N R 156 DU "O4'" O N N 157 DU "C3'" C N S 158 DU "O3'" O N N 159 DU "C2'" C N N 160 DU "C1'" C N R 161 DU N1 N N N 162 DU C2 C N N 163 DU O2 O N N 164 DU N3 N N N 165 DU C4 C N N 166 DU O4 O N N 167 DU C5 C N N 168 DU C6 C N N 169 DU HOP3 H N N 170 DU HOP2 H N N 171 DU "H5'" H N N 172 DU "H5''" H N N 173 DU "H4'" H N N 174 DU "H3'" H N N 175 DU "HO3'" H N N 176 DU "H2'" H N N 177 DU "H2''" H N N 178 DU "H1'" H N N 179 DU H3 H N N 180 DU H5 H N N 181 DU H6 H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BFA BR C5 sing N N 1 BFA C4 C3 doub Y N 2 BFA C4 C12 sing Y N 3 BFA C4 CD1 sing N N 4 BFA C3 C2 sing Y N 5 BFA C3 H3 sing N N 6 BFA C2 C1 doub Y N 7 BFA C2 H2 sing N N 8 BFA C1 C11 sing Y N 9 BFA C1 H1 sing N N 10 BFA N9 C11 doub Y N 11 BFA N9 C13 sing Y N 12 BFA C8 C7 doub Y N 13 BFA C8 C13 sing Y N 14 BFA C8 H8 sing N N 15 BFA C7 C6 sing Y N 16 BFA C7 H7 sing N N 17 BFA C6 C5 doub Y N 18 BFA C6 H6 sing N N 19 BFA C5 C14 sing Y N 20 BFA C12 C11 sing Y N 21 BFA C12 N10 doub Y N 22 BFA C13 C14 doub Y N 23 BFA C14 N10 sing Y N 24 BFA CD1 OD1 doub N N 25 BFA CD1 ND1 sing N N 26 BFA ND1 CD2 sing N N 27 BFA ND1 HN1 sing N N 28 BFA CD2 CD3 sing N N 29 BFA CD2 HD21 sing N N 30 BFA CD2 HD22 sing N N 31 BFA CD3 ND2 sing N N 32 BFA CD3 HD31 sing N N 33 BFA CD3 HD32 sing N N 34 BFA ND2 CD7 sing N N 35 BFA ND2 CD8 sing N N 36 BFA CD7 HD71 sing N N 37 BFA CD7 HD72 sing N N 38 BFA CD7 HD73 sing N N 39 BFA CD8 HD81 sing N N 40 BFA CD8 HD82 sing N N 41 BFA CD8 HD83 sing N N 42 DA OP3 P sing N N 43 DA OP3 HOP3 sing N N 44 DA P OP1 doub N N 45 DA P OP2 sing N N 46 DA P "O5'" sing N N 47 DA OP2 HOP2 sing N N 48 DA "O5'" "C5'" sing N N 49 DA "C5'" "C4'" sing N N 50 DA "C5'" "H5'" sing N N 51 DA "C5'" "H5''" sing N N 52 DA "C4'" "O4'" sing N N 53 DA "C4'" "C3'" sing N N 54 DA "C4'" "H4'" sing N N 55 DA "O4'" "C1'" sing N N 56 DA "C3'" "O3'" sing N N 57 DA "C3'" "C2'" sing N N 58 DA "C3'" "H3'" sing N N 59 DA "O3'" "HO3'" sing N N 60 DA "C2'" "C1'" sing N N 61 DA "C2'" "H2'" sing N N 62 DA "C2'" "H2''" sing N N 63 DA "C1'" N9 sing N N 64 DA "C1'" "H1'" sing N N 65 DA N9 C8 sing Y N 66 DA N9 C4 sing Y N 67 DA C8 N7 doub Y N 68 DA C8 H8 sing N N 69 DA N7 C5 sing Y N 70 DA C5 C6 sing Y N 71 DA C5 C4 doub Y N 72 DA C6 N6 sing N N 73 DA C6 N1 doub Y N 74 DA N6 H61 sing N N 75 DA N6 H62 sing N N 76 DA N1 C2 sing Y N 77 DA C2 N3 doub Y N 78 DA C2 H2 sing N N 79 DA N3 C4 sing Y N 80 DC OP3 P sing N N 81 DC OP3 HOP3 sing N N 82 DC P OP1 doub N N 83 DC P OP2 sing N N 84 DC P "O5'" sing N N 85 DC OP2 HOP2 sing N N 86 DC "O5'" "C5'" sing N N 87 DC "C5'" "C4'" sing N N 88 DC "C5'" "H5'" sing N N 89 DC "C5'" "H5''" sing N N 90 DC "C4'" "O4'" sing N N 91 DC "C4'" "C3'" sing N N 92 DC "C4'" "H4'" sing N N 93 DC "O4'" "C1'" sing N N 94 DC "C3'" "O3'" sing N N 95 DC "C3'" "C2'" sing N N 96 DC "C3'" "H3'" sing N N 97 DC "O3'" "HO3'" sing N N 98 DC "C2'" "C1'" sing N N 99 DC "C2'" "H2'" sing N N 100 DC "C2'" "H2''" sing N N 101 DC "C1'" N1 sing N N 102 DC "C1'" "H1'" sing N N 103 DC N1 C2 sing N N 104 DC N1 C6 sing N N 105 DC C2 O2 doub N N 106 DC C2 N3 sing N N 107 DC N3 C4 doub N N 108 DC C4 N4 sing N N 109 DC C4 C5 sing N N 110 DC N4 H41 sing N N 111 DC N4 H42 sing N N 112 DC C5 C6 doub N N 113 DC C5 H5 sing N N 114 DC C6 H6 sing N N 115 DG OP3 P sing N N 116 DG OP3 HOP3 sing N N 117 DG P OP1 doub N N 118 DG P OP2 sing N N 119 DG P "O5'" sing N N 120 DG OP2 HOP2 sing N N 121 DG "O5'" "C5'" sing N N 122 DG "C5'" "C4'" sing N N 123 DG "C5'" "H5'" sing N N 124 DG "C5'" "H5''" sing N N 125 DG "C4'" "O4'" sing N N 126 DG "C4'" "C3'" sing N N 127 DG "C4'" "H4'" sing N N 128 DG "O4'" "C1'" sing N N 129 DG "C3'" "O3'" sing N N 130 DG "C3'" "C2'" sing N N 131 DG "C3'" "H3'" sing N N 132 DG "O3'" "HO3'" sing N N 133 DG "C2'" "C1'" sing N N 134 DG "C2'" "H2'" sing N N 135 DG "C2'" "H2''" sing N N 136 DG "C1'" N9 sing N N 137 DG "C1'" "H1'" sing N N 138 DG N9 C8 sing Y N 139 DG N9 C4 sing Y N 140 DG C8 N7 doub Y N 141 DG C8 H8 sing N N 142 DG N7 C5 sing Y N 143 DG C5 C6 sing N N 144 DG C5 C4 doub Y N 145 DG C6 O6 doub N N 146 DG C6 N1 sing N N 147 DG N1 C2 sing N N 148 DG N1 H1 sing N N 149 DG C2 N2 sing N N 150 DG C2 N3 doub N N 151 DG N2 H21 sing N N 152 DG N2 H22 sing N N 153 DG N3 C4 sing N N 154 DU OP3 P sing N N 155 DU OP3 HOP3 sing N N 156 DU P OP1 doub N N 157 DU P OP2 sing N N 158 DU P "O5'" sing N N 159 DU OP2 HOP2 sing N N 160 DU "O5'" "C5'" sing N N 161 DU "C5'" "C4'" sing N N 162 DU "C5'" "H5'" sing N N 163 DU "C5'" "H5''" sing N N 164 DU "C4'" "O4'" sing N N 165 DU "C4'" "C3'" sing N N 166 DU "C4'" "H4'" sing N N 167 DU "O4'" "C1'" sing N N 168 DU "C3'" "O3'" sing N N 169 DU "C3'" "C2'" sing N N 170 DU "C3'" "H3'" sing N N 171 DU "O3'" "HO3'" sing N N 172 DU "C2'" "C1'" sing N N 173 DU "C2'" "H2'" sing N N 174 DU "C2'" "H2''" sing N N 175 DU "C1'" N1 sing N N 176 DU "C1'" "H1'" sing N N 177 DU N1 C2 sing N N 178 DU N1 C6 sing N N 179 DU C2 O2 doub N N 180 DU C2 N3 sing N N 181 DU N3 C4 sing N N 182 DU N3 H3 sing N N 183 DU C4 O4 doub N N 184 DU C4 C5 sing N N 185 DU C5 C6 doub N N 186 DU C5 H5 sing N N 187 DU C6 H6 sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EG6 'double helix' 1EG6 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 5 1_555 -0.642 -0.057 -0.246 -8.892 3.297 9.981 1 A_DG2:DC5_B A 2 ? B 5 ? 19 1 1 A DU 3 1_555 B DA 4 1_555 0.071 -0.035 -0.352 3.861 2.658 -0.991 2 A_DU3:DA4_B A 3 ? B 4 ? 20 1 1 A DA 4 1_555 B DU 3 1_555 0.047 0.069 0.137 -3.117 -0.497 5.705 3 A_DA4:DU3_B A 4 ? B 3 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.344 -0.161 -0.175 9.797 9.877 -0.488 4 A_DC5:DG2_B A 5 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 5 1_555 A DU 3 1_555 B DA 4 1_555 -1.174 -0.340 3.025 1.478 5.491 28.797 -1.743 2.606 2.850 10.908 -2.937 29.341 1 AA_DG2DU3:DA4DC5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 A DU 3 1_555 B DA 4 1_555 A DA 4 1_555 B DU 3 1_555 0.198 -0.568 3.364 -5.220 1.549 37.199 -1.088 -1.002 3.282 2.412 8.129 37.581 2 AA_DU3DA4:DU3DA4_BB A 3 ? B 4 ? A 4 ? B 3 ? 1 A DA 4 1_555 B DU 3 1_555 A DC 5 1_555 B DG 2 1_555 0.091 -0.259 3.209 3.556 2.971 25.810 -1.356 0.740 3.144 6.583 -7.880 26.215 3 AA_DA4DC5:DG2DU3_BB A 4 ? B 3 ? A 5 ? B 2 ? # _atom_sites.entry_id 1EG6 _atom_sites.fract_transf_matrix[1][1] 0.033990 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018713 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024201 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C CO N O P # loop_