HEADER LIGASE 21-FEB-00 1EHI TITLE D-ALANINE:D-LACTATE LIGASE (LMDDL2) OF VANCOMYCIN-RESISTANT TITLE 2 LEUCONOSTOC MESENTEROIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE:D-LACTATE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LMDDL2; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEUCONOSTOC MESENTEROIDES; SOURCE 3 ORGANISM_TAXID: 1245; SOURCE 4 ATCC: 8293; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5A AND BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLMDDL2 KEYWDS ATP-BINDING. GRASP MOTIF FOR ATP., LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.P.KUZIN,T.SUN,J.JORCZAK-BAILLASS,V.L.HEALY,C.T.WALSH,J.R.KNOX REVDAT 5 13-MAR-24 1EHI 1 COMPND SOURCE REVDAT 4 07-FEB-24 1EHI 1 REMARK SEQADV LINK REVDAT 3 04-OCT-17 1EHI 1 REMARK REVDAT 2 24-FEB-09 1EHI 1 VERSN REVDAT 1 23-MAY-00 1EHI 0 JRNL AUTH A.P.KUZIN,T.SUN,J.JORCZAK-BAILLASS,V.L.HEALY,C.T.WALSH, JRNL AUTH 2 J.R.KNOX JRNL TITL ENZYMES OF VANCOMYCIN RESISTANCE: THE STRUCTURE OF JRNL TITL 2 D-ALANINE-D-LACTATE LIGASE OF NATURALLY RESISTANT JRNL TITL 3 LEUCONOSTOC MESENTEROIDES. JRNL REF STRUCTURE FOLD.DES. V. 8 463 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 10801495 JRNL DOI 10.1016/S0969-2126(00)00129-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.FAN,P.C.MOEWS,C.T.WALSH,J.R.KNOX REMARK 1 TITL VANCOMYCIN RESISTANCE: STRUCTURE OF D-ALANINE:D-ALANINE REMARK 1 TITL 2 LIGASE AT 2.3 A RESOLUTION REMARK 1 REF SCIENCE V. 266 439 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.FAN,I.-S.PARK,C.T.WALSH,J.R.KNOX REMARK 1 TITL D-ALANINE:D-ALANINE LIGASE: PHOSPHONATE AND PHOSPHINATE REMARK 1 TITL 2 INTERMEDIATES WITH WILD-TYPE AND THE Y216F MUTANT REMARK 1 REF BIOCHEMISTRY V. 36 2531 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI962431T REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.0 REMARK 3 NUMBER OF REFLECTIONS : 27948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 951 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION. A 3-WAVELENGTH REMARK 3 MAD METHOD WAS USED TO DETERMINE STRUCTURE OF THE SELENOMET- REMARK 3 PROTEIN. A NATIVE DATA SET (A1 AT CHESS) WAS USED TO REFINE REMARK 3 STRUCTURE. REMARK 4 REMARK 4 1EHI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-00. REMARK 100 THE DEPOSITION ID IS D_1000010577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO (DENZO) REMARK 200 DATA SCALING SOFTWARE : SCALEPACK (DENZO) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30564 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: 3-WAVELENGTH MAD NEAR SE REMARK 200 EDGE (X12C AT BNL) REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000 15%, 0.1 M AMMONIUM SULFATE, REMARK 280 50MM NACL, 2.4MM DTT, 1MM MGCL2, 3MM ATP, 3MM PHOSPHINIC ACID, REMARK 280 50MM MES BUFFER., PH 6.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.10000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.10000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE LIGASE IS A DIMER FORMED OF CHAIN A AND B. REMARK 300 HOWEVER, PART OF CHAIN B IS MISSING IN THE CRYSTALLOGRAPHIC MODEL. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 TYR A 363 REMARK 465 SER A 364 REMARK 465 PHE A 365 REMARK 465 VAL A 366 REMARK 465 SER A 367 REMARK 465 LEU A 368 REMARK 465 GLY A 369 REMARK 465 GLU A 370 REMARK 465 GLU A 371 REMARK 465 LYS A 372 REMARK 465 ILE A 373 REMARK 465 GLY A 374 REMARK 465 LYS A 375 REMARK 465 PHE A 376 REMARK 465 ASN A 377 REMARK 465 MET B 401 REMARK 465 VAL B 645 REMARK 465 PRO B 646 REMARK 465 ASN B 647 REMARK 465 GLN B 648 REMARK 465 GLY B 649 REMARK 465 SER B 650 REMARK 465 GLY B 651 REMARK 465 ASP B 652 REMARK 465 GLY B 653 REMARK 465 TRP B 654 REMARK 465 TYR B 655 REMARK 465 ASP B 656 REMARK 465 TYR B 657 REMARK 465 ASN B 658 REMARK 465 ASN B 659 REMARK 465 LYS B 660 REMARK 465 PHE B 661 REMARK 465 VAL B 662 REMARK 465 ASP B 663 REMARK 465 ASN B 664 REMARK 465 SER B 665 REMARK 465 ALA B 666 REMARK 465 GLU B 771 REMARK 465 LYS B 772 REMARK 465 ILE B 773 REMARK 465 GLY B 774 REMARK 465 LYS B 775 REMARK 465 PHE B 776 REMARK 465 ASN B 777 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 770 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 61 11.93 -65.16 REMARK 500 LEU A 82 30.33 -99.89 REMARK 500 SER A 90 16.46 -63.80 REMARK 500 ALA A 91 7.76 -153.80 REMARK 500 SER A 186 15.43 57.43 REMARK 500 PHE A 207 7.04 -64.49 REMARK 500 ASN A 232 -98.03 -111.02 REMARK 500 SER A 250 43.95 -86.56 REMARK 500 SER A 265 10.33 -69.59 REMARK 500 PHE A 323 36.85 -144.16 REMARK 500 LEU A 361 30.25 -66.45 REMARK 500 LYS B 403 -64.30 -157.31 REMARK 500 ASN B 413 46.82 -82.68 REMARK 500 GLU B 416 34.92 -98.75 REMARK 500 LEU B 462 21.34 85.05 REMARK 500 VAL B 500 39.45 -145.72 REMARK 500 ASN B 504 22.76 -73.75 REMARK 500 LEU B 505 -37.44 -136.76 REMARK 500 GLN B 584 153.19 179.28 REMARK 500 SER B 586 -29.22 66.13 REMARK 500 SER B 587 -74.35 -158.93 REMARK 500 ALA B 622 67.66 -113.71 REMARK 500 ASN B 632 -105.04 -120.15 REMARK 500 SER B 638 -178.74 -69.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 783 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 316 OE1 REMARK 620 2 GLU A 316 OE2 49.4 REMARK 620 3 ASN A 318 OD1 109.1 76.3 REMARK 620 4 ADP A 781 O3B 64.9 92.0 167.4 REMARK 620 5 PHY A 782 O5P 145.1 100.6 73.0 105.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 784 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 316 OE2 REMARK 620 2 ADP A 781 O2B 81.0 REMARK 620 3 ADP A 781 O2A 61.4 76.4 REMARK 620 4 PHY A 782 O4P 80.7 69.1 132.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 783 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 784 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 781 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PHY A 782 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DLN RELATED DB: PDB REMARK 900 D-ALANINE:D-ALANINE LIGASE (DDLB) OF E. COLI COMPLEXED WITH REMARK 900 PHOSPHINATE AND ADP REMARK 900 RELATED ID: 1IOV RELATED DB: PDB REMARK 900 DDLB LIGASE WITH PHOSPHONATE AND ADP REMARK 900 RELATED ID: 1IOW RELATED DB: PDB REMARK 900 DDLB Y215F MUTANT WITH PHOSPHINATE AND ADP DBREF 1EHI A 1 377 UNP P71454 P71454_LEUME 1 377 DBREF 1EHI B 401 777 UNP P71454 P71454_LEUME 1 377 SEQADV 1EHI GLN A 270 UNP P71454 GLU 270 CONFLICT SEQADV 1EHI GLN B 670 UNP P71454 GLU 270 CONFLICT SEQRES 1 A 377 MET THR LYS LYS ARG VAL ALA LEU ILE PHE GLY GLY ASN SEQRES 2 A 377 SER SER GLU HIS ASP VAL SER LYS ARG SER ALA GLN ASN SEQRES 3 A 377 PHE TYR ASN ALA ILE GLU ALA THR GLY LYS TYR GLU ILE SEQRES 4 A 377 ILE VAL PHE ALA ILE ALA GLN ASN GLY PHE PHE LEU ASP SEQRES 5 A 377 THR GLU SER SER LYS LYS ILE LEU ALA LEU GLU ASP GLU SEQRES 6 A 377 GLN PRO ILE VAL ASP ALA PHE MET LYS THR VAL ASP ALA SEQRES 7 A 377 SER ASP PRO LEU ALA ARG ILE HIS ALA LEU LYS SER ALA SEQRES 8 A 377 GLY ASP PHE ASP ILE PHE PHE PRO VAL VAL HIS GLY ASN SEQRES 9 A 377 LEU GLY GLU ASP GLY THR LEU GLN GLY LEU PHE LYS LEU SEQRES 10 A 377 LEU ASP LYS PRO TYR VAL GLY ALA PRO LEU ARG GLY HIS SEQRES 11 A 377 ALA VAL SER PHE ASP LYS ALA LEU THR LYS GLU LEU LEU SEQRES 12 A 377 THR VAL ASN GLY ILE ARG ASN THR LYS TYR ILE VAL VAL SEQRES 13 A 377 ASP PRO GLU SER ALA ASN ASN TRP SER TRP ASP LYS ILE SEQRES 14 A 377 VAL ALA GLU LEU GLY ASN ILE VAL PHE VAL LYS ALA ALA SEQRES 15 A 377 ASN GLN GLY SER SER VAL GLY ILE SER ARG VAL THR ASN SEQRES 16 A 377 ALA GLU GLU TYR THR GLU ALA LEU SER ASP SER PHE GLN SEQRES 17 A 377 TYR ASP TYR LYS VAL LEU ILE GLU GLU ALA VAL ASN GLY SEQRES 18 A 377 ALA ARG GLU LEU GLU VAL GLY VAL ILE GLY ASN ASP GLN SEQRES 19 A 377 PRO LEU VAL SER GLU ILE GLY ALA HIS THR VAL PRO ASN SEQRES 20 A 377 GLN GLY SER GLY ASP GLY TRP TYR ASP TYR ASN ASN LYS SEQRES 21 A 377 PHE VAL ASP ASN SER ALA VAL HIS PHE GLN ILE PRO ALA SEQRES 22 A 377 GLN LEU SER PRO GLU VAL THR LYS GLU VAL LYS GLN MET SEQRES 23 A 377 ALA LEU ASP ALA TYR LYS VAL LEU ASN LEU ARG GLY GLU SEQRES 24 A 377 ALA ARG MET ASP PHE LEU LEU ASP GLU ASN ASN VAL PRO SEQRES 25 A 377 TYR LEU GLY GLU PRO ASN THR LEU PRO GLY PHE THR ASN SEQRES 26 A 377 MET SER LEU PHE LYS ARG LEU TRP ASP TYR SER ASP ILE SEQRES 27 A 377 ASN ASN ALA LYS LEU VAL ASP MET LEU ILE ASP TYR GLY SEQRES 28 A 377 PHE GLU ASP PHE ALA GLN ASN LYS LYS LEU SER TYR SER SEQRES 29 A 377 PHE VAL SER LEU GLY GLU GLU LYS ILE GLY LYS PHE ASN SEQRES 1 B 377 MET THR LYS LYS ARG VAL ALA LEU ILE PHE GLY GLY ASN SEQRES 2 B 377 SER SER GLU HIS ASP VAL SER LYS ARG SER ALA GLN ASN SEQRES 3 B 377 PHE TYR ASN ALA ILE GLU ALA THR GLY LYS TYR GLU ILE SEQRES 4 B 377 ILE VAL PHE ALA ILE ALA GLN ASN GLY PHE PHE LEU ASP SEQRES 5 B 377 THR GLU SER SER LYS LYS ILE LEU ALA LEU GLU ASP GLU SEQRES 6 B 377 GLN PRO ILE VAL ASP ALA PHE MET LYS THR VAL ASP ALA SEQRES 7 B 377 SER ASP PRO LEU ALA ARG ILE HIS ALA LEU LYS SER ALA SEQRES 8 B 377 GLY ASP PHE ASP ILE PHE PHE PRO VAL VAL HIS GLY ASN SEQRES 9 B 377 LEU GLY GLU ASP GLY THR LEU GLN GLY LEU PHE LYS LEU SEQRES 10 B 377 LEU ASP LYS PRO TYR VAL GLY ALA PRO LEU ARG GLY HIS SEQRES 11 B 377 ALA VAL SER PHE ASP LYS ALA LEU THR LYS GLU LEU LEU SEQRES 12 B 377 THR VAL ASN GLY ILE ARG ASN THR LYS TYR ILE VAL VAL SEQRES 13 B 377 ASP PRO GLU SER ALA ASN ASN TRP SER TRP ASP LYS ILE SEQRES 14 B 377 VAL ALA GLU LEU GLY ASN ILE VAL PHE VAL LYS ALA ALA SEQRES 15 B 377 ASN GLN GLY SER SER VAL GLY ILE SER ARG VAL THR ASN SEQRES 16 B 377 ALA GLU GLU TYR THR GLU ALA LEU SER ASP SER PHE GLN SEQRES 17 B 377 TYR ASP TYR LYS VAL LEU ILE GLU GLU ALA VAL ASN GLY SEQRES 18 B 377 ALA ARG GLU LEU GLU VAL GLY VAL ILE GLY ASN ASP GLN SEQRES 19 B 377 PRO LEU VAL SER GLU ILE GLY ALA HIS THR VAL PRO ASN SEQRES 20 B 377 GLN GLY SER GLY ASP GLY TRP TYR ASP TYR ASN ASN LYS SEQRES 21 B 377 PHE VAL ASP ASN SER ALA VAL HIS PHE GLN ILE PRO ALA SEQRES 22 B 377 GLN LEU SER PRO GLU VAL THR LYS GLU VAL LYS GLN MET SEQRES 23 B 377 ALA LEU ASP ALA TYR LYS VAL LEU ASN LEU ARG GLY GLU SEQRES 24 B 377 ALA ARG MET ASP PHE LEU LEU ASP GLU ASN ASN VAL PRO SEQRES 25 B 377 TYR LEU GLY GLU PRO ASN THR LEU PRO GLY PHE THR ASN SEQRES 26 B 377 MET SER LEU PHE LYS ARG LEU TRP ASP TYR SER ASP ILE SEQRES 27 B 377 ASN ASN ALA LYS LEU VAL ASP MET LEU ILE ASP TYR GLY SEQRES 28 B 377 PHE GLU ASP PHE ALA GLN ASN LYS LYS LEU SER TYR SER SEQRES 29 B 377 PHE VAL SER LEU GLY GLU GLU LYS ILE GLY LYS PHE ASN HET MG A 783 1 HET MG A 784 1 HET ADP A 781 27 HET PHY A 782 16 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PHY 1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC HETNAM 2 PHY ACID FORMUL 3 MG 2(MG 2+) FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 PHY C6 H15 N O7 P2 FORMUL 7 HOH *213(H2 O) HELIX 1 1 GLU A 16 GLY A 35 1 20 HELIX 2 2 ASP A 52 ALA A 61 1 10 HELIX 3 3 ASP A 64 LYS A 74 1 11 HELIX 4 4 ILE A 85 SER A 90 5 6 HELIX 5 5 GLY A 109 LEU A 118 1 10 HELIX 6 6 PRO A 126 ASP A 135 1 10 HELIX 7 7 ASP A 135 VAL A 145 1 11 HELIX 8 8 GLU A 159 TRP A 164 5 6 HELIX 9 9 SER A 165 GLY A 174 1 10 HELIX 10 10 ASN A 195 PHE A 207 1 13 HELIX 11 11 ASP A 256 PHE A 261 1 6 HELIX 12 12 SER A 276 LEU A 294 1 19 HELIX 13 13 SER A 327 ARG A 331 5 5 HELIX 14 14 ARG A 331 ASP A 337 5 7 HELIX 15 15 ASN A 339 LEU A 361 1 23 HELIX 16 16 GLU B 416 ALA B 433 1 18 HELIX 17 17 ASP B 452 ALA B 461 1 10 HELIX 18 18 ASP B 464 LYS B 474 1 11 HELIX 19 19 LEU B 482 ALA B 487 1 6 HELIX 20 20 GLY B 509 LEU B 518 1 10 HELIX 21 21 PRO B 526 ASP B 535 1 10 HELIX 22 22 ASP B 535 ASN B 546 1 12 HELIX 23 23 GLU B 559 TRP B 564 5 6 HELIX 24 24 SER B 565 LEU B 573 1 9 HELIX 25 25 ASN B 595 PHE B 607 1 13 HELIX 26 26 SER B 676 LEU B 694 1 19 HELIX 27 27 SER B 727 ARG B 731 5 5 HELIX 28 28 LEU B 732 ASP B 737 5 6 HELIX 29 29 ASN B 739 LYS B 759 1 21 SHEET 1 A 3 TYR A 37 ILE A 44 0 SHEET 2 A 3 LYS A 4 GLY A 11 1 O LYS A 4 N GLU A 38 SHEET 3 A 3 ILE A 96 VAL A 100 1 O ILE A 96 N ALA A 7 SHEET 1 B 4 TYR A 153 VAL A 156 0 SHEET 2 B 4 VAL A 213 GLU A 217 -1 N VAL A 213 O VAL A 156 SHEET 3 B 4 VAL A 177 ALA A 181 -1 N PHE A 178 O GLU A 216 SHEET 4 B 4 ILE A 190 VAL A 193 -1 N SER A 191 O VAL A 179 SHEET 1 C 5 HIS A 268 GLN A 270 0 SHEET 2 C 5 LEU A 236 THR A 244 -1 N ALA A 242 O GLN A 270 SHEET 3 C 5 GLU A 224 GLY A 231 -1 N GLU A 224 O HIS A 243 SHEET 4 C 5 GLY A 298 LEU A 306 -1 O GLY A 298 N GLY A 231 SHEET 5 C 5 PRO A 312 ASN A 318 -1 N TYR A 313 O LEU A 305 SHEET 1 D 4 PHE B 450 LEU B 451 0 SHEET 2 D 4 TYR B 437 ILE B 444 -1 O ALA B 443 N LEU B 451 SHEET 3 D 4 LYS B 404 GLY B 411 1 O LYS B 404 N GLU B 438 SHEET 4 D 4 ILE B 496 PRO B 499 1 O ILE B 496 N ALA B 407 SHEET 1 E 4 TYR B 553 VAL B 556 0 SHEET 2 E 4 VAL B 613 GLU B 617 -1 O VAL B 613 N VAL B 556 SHEET 3 E 4 VAL B 577 ALA B 581 -1 N PHE B 578 O GLU B 616 SHEET 4 E 4 SER B 591 VAL B 593 -1 N SER B 591 O VAL B 579 SHEET 1 F 5 PHE B 669 GLN B 670 0 SHEET 2 F 5 LEU B 636 HIS B 643 -1 O ALA B 642 N GLN B 670 SHEET 3 F 5 ARG B 623 GLY B 631 -1 O GLU B 624 N HIS B 643 SHEET 4 F 5 GLY B 698 LEU B 706 -1 N GLY B 698 O GLY B 631 SHEET 5 F 5 PRO B 712 ASN B 718 -1 N TYR B 713 O LEU B 705 LINK OE1 GLU A 316 MG MG A 783 1555 1555 2.31 LINK OE2 GLU A 316 MG MG A 783 1555 1555 2.83 LINK OE2 GLU A 316 MG MG A 784 1555 1555 2.65 LINK OD1 ASN A 318 MG MG A 783 1555 1555 2.54 LINK O3B ADP A 781 MG MG A 783 1555 1555 2.48 LINK O2B ADP A 781 MG MG A 784 1555 1555 2.51 LINK O2A ADP A 781 MG MG A 784 1555 1555 2.66 LINK O5P PHY A 782 MG MG A 783 1555 1555 2.20 LINK O4P PHY A 782 MG MG A 784 1555 1555 2.25 CISPEP 1 ILE A 271 PRO A 272 0 -0.09 CISPEP 2 ILE B 671 PRO B 672 0 -0.01 SITE 1 AC1 4 GLU A 316 ASN A 318 ADP A 781 PHY A 782 SITE 1 AC2 4 ASP A 303 GLU A 316 ADP A 781 PHY A 782 SITE 1 AC3 22 THR A 151 PHE A 178 LYS A 180 GLN A 184 SITE 2 AC3 22 GLY A 185 SER A 186 SER A 187 ILE A 190 SITE 3 AC3 22 GLU A 216 GLU A 217 ALA A 218 VAL A 219 SITE 4 AC3 22 GLU A 224 TRP A 254 TYR A 255 LYS A 260 SITE 5 AC3 22 LEU A 305 GLU A 316 PHY A 782 MG A 783 SITE 6 AC3 22 MG A 784 HOH A 847 SITE 1 AC4 17 GLU A 16 SER A 186 LYS A 260 PHE A 261 SITE 2 AC4 17 ARG A 301 ASP A 303 GLU A 316 ASN A 318 SITE 3 AC4 17 GLY A 322 MET A 326 SER A 327 ADP A 781 SITE 4 AC4 17 MG A 783 MG A 784 HOH A 824 HOH A 834 SITE 5 AC4 17 HOH A 924 CRYST1 118.200 90.800 82.100 90.00 92.10 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008460 0.000000 0.000310 0.00000 SCALE2 0.000000 0.011013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012188 0.00000