data_1EI4 # _entry.id 1EI4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EI4 pdb_00001ei4 10.2210/pdb1ei4/pdb NDB BD0038 ? ? RCSB RCSB010596 ? ? WWPDB D_1000010596 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-03-27 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.conn_type_id' 11 4 'Structure model' '_struct_conn.id' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EI4 _pdbx_database_status.recvd_initial_deposition_date 2000-02-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Minasov, G.' 1 'Teplova, M.' 2 'Nielsen, P.' 3 'Wengel, J.' 4 'Egli, M.' 5 # _citation.id primary _citation.title 'Structural basis of cleavage by RNase H of hybrids of arabinonucleic acids and RNA.' _citation.journal_abbrev Biochemistry _citation.journal_volume 39 _citation.page_first 3525 _citation.page_last 3532 _citation.year 2000 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10736151 _citation.pdbx_database_id_DOI 10.1021/bi992792j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Minasov, G.' 1 ? primary 'Teplova, M.' 2 ? primary 'Nielsen, P.' 3 ? primary 'Wengel, J.' 4 ? primary 'Egli, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TLC)P*(TLC)P*CP*GP*CP*G)-3') ; 3747.466 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(TLC)(TLC)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 SPERMINE SPM 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 TLC n 1 8 TLC n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 TLC 'DNA linking' n "2-O,3-ETHDIYL-ARABINOFURANOSYL-THYMINE-5'-MONOPHOSPHATE" "[3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE" 'C12 H17 N2 O9 P' 364.245 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 TLC 7 7 7 TLC TLC A . n A 1 8 TLC 8 8 8 TLC TLC A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 TLC 7 19 19 TLC TLC B . n B 1 8 TLC 8 20 20 TLC TLC B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 25 25 MG MG A . D 3 SPM 1 521 521 SPM SPM B . E 4 HOH 1 26 26 HOH HOH A . E 4 HOH 2 27 27 HOH HOH A . E 4 HOH 3 28 28 HOH HOH A . E 4 HOH 4 29 29 HOH HOH A . E 4 HOH 5 31 31 HOH HOH A . E 4 HOH 6 57 57 HOH HOH A . E 4 HOH 7 59 59 HOH HOH A . E 4 HOH 8 61 61 HOH HOH A . E 4 HOH 9 65 65 HOH HOH A . E 4 HOH 10 78 78 HOH HOH A . E 4 HOH 11 101 101 HOH HOH A . E 4 HOH 12 102 102 HOH HOH A . E 4 HOH 13 106 106 HOH HOH A . E 4 HOH 14 107 107 HOH HOH A . E 4 HOH 15 108 108 HOH HOH A . E 4 HOH 16 112 112 HOH HOH A . E 4 HOH 17 113 113 HOH HOH A . E 4 HOH 18 114 114 HOH HOH A . E 4 HOH 19 116 116 HOH HOH A . E 4 HOH 20 117 117 HOH HOH A . E 4 HOH 21 118 118 HOH HOH A . E 4 HOH 22 119 119 HOH HOH A . E 4 HOH 23 122 122 HOH HOH A . E 4 HOH 24 123 123 HOH HOH A . E 4 HOH 25 125 125 HOH HOH A . E 4 HOH 26 126 126 HOH HOH A . E 4 HOH 27 128 128 HOH HOH A . E 4 HOH 28 133 133 HOH HOH A . E 4 HOH 29 134 134 HOH HOH A . E 4 HOH 30 141 141 HOH HOH A . E 4 HOH 31 146 146 HOH HOH A . E 4 HOH 32 147 147 HOH HOH A . E 4 HOH 33 149 149 HOH HOH A . E 4 HOH 34 152 152 HOH HOH A . E 4 HOH 35 153 153 HOH HOH A . E 4 HOH 36 155 155 HOH HOH A . E 4 HOH 37 158 158 HOH HOH A . E 4 HOH 38 159 159 HOH HOH A . E 4 HOH 39 160 160 HOH HOH A . E 4 HOH 40 162 162 HOH HOH A . E 4 HOH 41 165 165 HOH HOH A . E 4 HOH 42 174 174 HOH HOH A . E 4 HOH 43 179 179 HOH HOH A . E 4 HOH 44 182 182 HOH HOH A . E 4 HOH 45 183 183 HOH HOH A . E 4 HOH 46 190 190 HOH HOH A . E 4 HOH 47 196 196 HOH HOH A . E 4 HOH 48 197 197 HOH HOH A . E 4 HOH 49 201 201 HOH HOH A . E 4 HOH 50 208 208 HOH HOH A . E 4 HOH 51 226 226 HOH HOH A . E 4 HOH 52 227 227 HOH HOH A . E 4 HOH 53 239 239 HOH HOH A . E 4 HOH 54 249 249 HOH HOH A . E 4 HOH 55 252 252 HOH HOH A . E 4 HOH 56 266 266 HOH HOH A . E 4 HOH 57 269 269 HOH HOH A . E 4 HOH 58 270 270 HOH HOH A . E 4 HOH 59 271 271 HOH HOH A . E 4 HOH 60 273 273 HOH HOH A . E 4 HOH 61 277 277 HOH HOH A . E 4 HOH 62 303 303 HOH HOH A . E 4 HOH 63 309 309 HOH HOH A . E 4 HOH 64 311 311 HOH HOH A . E 4 HOH 65 314 314 HOH HOH A . E 4 HOH 66 316 316 HOH HOH A . E 4 HOH 67 318 318 HOH HOH A . E 4 HOH 68 319 319 HOH HOH A . E 4 HOH 69 322 322 HOH HOH A . E 4 HOH 70 323 323 HOH HOH A . E 4 HOH 71 324 324 HOH HOH A . E 4 HOH 72 326 326 HOH HOH A . E 4 HOH 73 327 327 HOH HOH A . E 4 HOH 74 330 330 HOH HOH A . F 4 HOH 1 30 30 HOH HOH B . F 4 HOH 2 48 48 HOH HOH B . F 4 HOH 3 49 49 HOH HOH B . F 4 HOH 4 66 66 HOH HOH B . F 4 HOH 5 69 69 HOH HOH B . F 4 HOH 6 70 70 HOH HOH B . F 4 HOH 7 72 72 HOH HOH B . F 4 HOH 8 74 74 HOH HOH B . F 4 HOH 9 75 75 HOH HOH B . F 4 HOH 10 79 79 HOH HOH B . F 4 HOH 11 103 103 HOH HOH B . F 4 HOH 12 104 104 HOH HOH B . F 4 HOH 13 105 105 HOH HOH B . F 4 HOH 14 109 109 HOH HOH B . F 4 HOH 15 110 110 HOH HOH B . F 4 HOH 16 111 111 HOH HOH B . F 4 HOH 17 115 115 HOH HOH B . F 4 HOH 18 127 127 HOH HOH B . F 4 HOH 19 129 129 HOH HOH B . F 4 HOH 20 130 130 HOH HOH B . F 4 HOH 21 131 131 HOH HOH B . F 4 HOH 22 136 136 HOH HOH B . F 4 HOH 23 137 137 HOH HOH B . F 4 HOH 24 139 139 HOH HOH B . F 4 HOH 25 143 143 HOH HOH B . F 4 HOH 26 144 144 HOH HOH B . F 4 HOH 27 145 145 HOH HOH B . F 4 HOH 28 148 148 HOH HOH B . F 4 HOH 29 151 151 HOH HOH B . F 4 HOH 30 154 154 HOH HOH B . F 4 HOH 31 161 161 HOH HOH B . F 4 HOH 32 163 163 HOH HOH B . F 4 HOH 33 164 164 HOH HOH B . F 4 HOH 34 168 168 HOH HOH B . F 4 HOH 35 169 169 HOH HOH B . F 4 HOH 36 170 170 HOH HOH B . F 4 HOH 37 172 172 HOH HOH B . F 4 HOH 38 175 175 HOH HOH B . F 4 HOH 39 178 178 HOH HOH B . F 4 HOH 40 181 181 HOH HOH B . F 4 HOH 41 184 184 HOH HOH B . F 4 HOH 42 188 188 HOH HOH B . F 4 HOH 43 191 191 HOH HOH B . F 4 HOH 44 192 192 HOH HOH B . F 4 HOH 45 195 195 HOH HOH B . F 4 HOH 46 199 199 HOH HOH B . F 4 HOH 47 204 204 HOH HOH B . F 4 HOH 48 210 210 HOH HOH B . F 4 HOH 49 211 211 HOH HOH B . F 4 HOH 50 213 213 HOH HOH B . F 4 HOH 51 228 228 HOH HOH B . F 4 HOH 52 237 237 HOH HOH B . F 4 HOH 53 241 241 HOH HOH B . F 4 HOH 54 242 242 HOH HOH B . F 4 HOH 55 244 244 HOH HOH B . F 4 HOH 56 245 245 HOH HOH B . F 4 HOH 57 251 251 HOH HOH B . F 4 HOH 58 253 253 HOH HOH B . F 4 HOH 59 254 254 HOH HOH B . F 4 HOH 60 278 278 HOH HOH B . F 4 HOH 61 281 281 HOH HOH B . F 4 HOH 62 283 283 HOH HOH B . F 4 HOH 63 285 285 HOH HOH B . F 4 HOH 64 301 301 HOH HOH B . F 4 HOH 65 302 302 HOH HOH B . F 4 HOH 66 304 304 HOH HOH B . F 4 HOH 67 305 305 HOH HOH B . F 4 HOH 68 306 306 HOH HOH B . F 4 HOH 69 307 307 HOH HOH B . F 4 HOH 70 308 308 HOH HOH B . F 4 HOH 71 310 310 HOH HOH B . F 4 HOH 72 312 312 HOH HOH B . F 4 HOH 73 313 313 HOH HOH B . F 4 HOH 74 315 315 HOH HOH B . F 4 HOH 75 317 317 HOH HOH B . F 4 HOH 76 320 320 HOH HOH B . F 4 HOH 77 321 321 HOH HOH B . F 4 HOH 78 325 325 HOH HOH B . F 4 HOH 79 328 328 HOH HOH B . F 4 HOH 80 329 329 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1EI4 _cell.length_a 25.280 _cell.length_b 40.550 _cell.length_c 65.130 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EI4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 1EI4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.41 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details 'OLIGONUCLEOTIDE, SPERMINE, MAGNESIUM ACETATE, SODIUM CACODYLATE BUFFER, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 SPERMINE ? ? ? 1 2 1 'MAGNESIUM ACETATE' ? ? ? 1 3 1 'SODIUM CACODYLATE BUFFER' ? ? ? 1 4 2 'MAGNESIUM ACETATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 105.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-06-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength 1.0000 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EI4 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.43 _reflns.number_obs 13592 _reflns.number_all 13592 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.0650000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 44.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.5 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.43 _reflns_shell.d_res_low 1.48 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.1880000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 6.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EI4 _refine.ls_number_reflns_obs 12716 _refine.ls_number_reflns_all 12720 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.0 _refine.ls_d_res_high 1.43 _refine.ls_percent_reflns_obs 98.2 _refine.ls_R_factor_obs 0.1980000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1980000 _refine.ls_R_factor_R_free 0.2110000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 1296 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -6.795 _refine.aniso_B[2][2] 1.823 _refine.aniso_B[3][3] 4.972 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'MAXIMUM LIKELIHOOD TARGET USING AMPLITUDES, BULK SOLVENT CORRECTION' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 498 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 159 _refine_hist.number_atoms_total 672 _refine_hist.d_res_high 1.43 _refine_hist.d_res_low 17.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.55 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1EI4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EI4 _struct.title ;B-DNA DODECAMER CGCGAAT(TLC)CGCG WITH INCORPORATED [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EI4 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'MODIFIED B-DODECAMER, [3.3.0]BICYCLO-ARABINONUCLEIC ACID, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1EI4 _struct_ref.pdbx_db_accession 1EI4 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EI4 A 1 ? 12 ? 1EI4 1 ? 12 ? 1 12 2 1 1EI4 B 1 ? 12 ? 1EI4 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 6 "O3'" ? ? ? 1_555 A TLC 7 P ? ? A DA 6 A TLC 7 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale both ? A TLC 7 "O3'" ? ? ? 1_555 A TLC 8 P ? ? A TLC 7 A TLC 8 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? A TLC 8 "O3'" ? ? ? 1_555 A DC 9 P ? ? A TLC 8 A DC 9 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale4 covale both ? B DA 6 "O3'" ? ? ? 1_555 B TLC 7 P ? ? B DA 18 B TLC 19 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale5 covale both ? B TLC 7 "O3'" ? ? ? 1_555 B TLC 8 P ? ? B TLC 19 B TLC 20 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale6 covale both ? B TLC 8 "O3'" ? ? ? 1_555 B DC 9 P ? ? B TLC 20 B DC 21 1_555 ? ? ? ? ? ? ? 1.615 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 A HOH 26 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 A HOH 27 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 A HOH 28 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 A HOH 29 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 25 A HOH 31 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 25 B HOH 30 1_555 ? ? ? ? ? ? ? 2.165 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B TLC 8 N3 ? ? A DA 5 B TLC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B TLC 8 O4 ? ? A DA 5 B TLC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B TLC 7 N3 ? ? A DA 6 B TLC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B TLC 7 O4 ? ? A DA 6 B TLC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A TLC 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A TLC 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A TLC 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A TLC 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A TLC 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A TLC 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A TLC 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A TLC 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 27 ? 1_555 176.5 ? 2 O ? E HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 28 ? 1_555 93.8 ? 3 O ? E HOH . ? A HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 28 ? 1_555 89.2 ? 4 O ? E HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 29 ? 1_555 87.6 ? 5 O ? E HOH . ? A HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 29 ? 1_555 89.4 ? 6 O ? E HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 29 ? 1_555 177.6 ? 7 O ? E HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 31 ? 1_555 94.5 ? 8 O ? E HOH . ? A HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 31 ? 1_555 87.4 ? 9 O ? E HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 31 ? 1_555 89.3 ? 10 O ? E HOH . ? A HOH 29 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? E HOH . ? A HOH 31 ? 1_555 92.5 ? 11 O ? E HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 30 ? 1_555 88.3 ? 12 O ? E HOH . ? A HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 30 ? 1_555 89.8 ? 13 O ? E HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 30 ? 1_555 90.1 ? 14 O ? E HOH . ? A HOH 29 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 30 ? 1_555 88.0 ? 15 O ? E HOH . ? A HOH 31 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? F HOH . ? B HOH 30 ? 1_555 177.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SPM 521 ? 12 'BINDING SITE FOR RESIDUE SPM B 521' AC2 Software A MG 25 ? 6 'BINDING SITE FOR RESIDUE MG A 25' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DG A 10 ? DG A 10 . ? 1_555 ? 2 AC1 12 HOH E . ? HOH A 227 . ? 1_555 ? 3 AC1 12 HOH E . ? HOH A 252 . ? 1_555 ? 4 AC1 12 DC B 1 ? DC B 13 . ? 1_555 ? 5 AC1 12 DG B 2 ? DG B 14 . ? 1_555 ? 6 AC1 12 TLC B 7 ? TLC B 19 . ? 4_556 ? 7 AC1 12 DC B 11 ? DC B 23 . ? 2_655 ? 8 AC1 12 DG B 12 ? DG B 24 . ? 2_655 ? 9 AC1 12 HOH F . ? HOH B 148 . ? 2_655 ? 10 AC1 12 HOH F . ? HOH B 164 . ? 1_555 ? 11 AC1 12 HOH F . ? HOH B 281 . ? 2_655 ? 12 AC1 12 HOH F . ? HOH B 325 . ? 1_555 ? 13 AC2 6 HOH E . ? HOH A 26 . ? 1_555 ? 14 AC2 6 HOH E . ? HOH A 27 . ? 1_555 ? 15 AC2 6 HOH E . ? HOH A 28 . ? 1_555 ? 16 AC2 6 HOH E . ? HOH A 29 . ? 1_555 ? 17 AC2 6 HOH E . ? HOH A 31 . ? 1_555 ? 18 AC2 6 HOH F . ? HOH B 30 . ? 1_555 ? # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 9 ? ? 0.091 'SIDE CHAIN' 2 1 DC A 11 ? ? 0.081 'SIDE CHAIN' 3 1 DC B 15 ? ? 0.061 'SIDE CHAIN' 4 1 DC B 23 ? ? 0.073 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TLC 7 A TLC 7 ? DT ? 2 A TLC 8 A TLC 8 ? DT ? 3 B TLC 7 B TLC 19 ? DT ? 4 B TLC 8 B TLC 20 ? DT ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 MG MG MG N N 111 SPM N1 N N N 112 SPM C2 C N N 113 SPM C3 C N N 114 SPM C4 C N N 115 SPM N5 N N N 116 SPM C6 C N N 117 SPM C7 C N N 118 SPM C8 C N N 119 SPM C9 C N N 120 SPM N10 N N N 121 SPM C11 C N N 122 SPM C12 C N N 123 SPM C13 C N N 124 SPM N14 N N N 125 SPM HN11 H N N 126 SPM HN12 H N N 127 SPM H21 H N N 128 SPM H22 H N N 129 SPM H31 H N N 130 SPM H32 H N N 131 SPM H41 H N N 132 SPM H42 H N N 133 SPM HN5 H N N 134 SPM H61 H N N 135 SPM H62 H N N 136 SPM H71 H N N 137 SPM H72 H N N 138 SPM H81 H N N 139 SPM H82 H N N 140 SPM H91 H N N 141 SPM H92 H N N 142 SPM HN0 H N N 143 SPM H111 H N N 144 SPM H112 H N N 145 SPM H121 H N N 146 SPM H122 H N N 147 SPM H131 H N N 148 SPM H132 H N N 149 SPM HN41 H N N 150 SPM HN42 H N N 151 TLC P P N N 152 TLC OP1 O N N 153 TLC OP2 O N N 154 TLC OP3 O N N 155 TLC "O5'" O N N 156 TLC "C5'" C N N 157 TLC "C4'" C N R 158 TLC "O4'" O N N 159 TLC "C1'" C N R 160 TLC N1 N N N 161 TLC C6 C N N 162 TLC C2 C N N 163 TLC O2 O N N 164 TLC N3 N N N 165 TLC C4 C N N 166 TLC O4 O N N 167 TLC C5 C N N 168 TLC C5M C N N 169 TLC "C2'" C N S 170 TLC O2L O N N 171 TLC C3L C N N 172 TLC C2L C N N 173 TLC "C3'" C N R 174 TLC "O3'" O N N 175 TLC HOP2 H N N 176 TLC HOP3 H N N 177 TLC "H5'" H N N 178 TLC "H5''" H N N 179 TLC "H4'" H N N 180 TLC "H1'" H N N 181 TLC H6 H N N 182 TLC HN3 H N N 183 TLC H71 H N N 184 TLC H72 H N N 185 TLC H73 H N N 186 TLC "H2'" H N N 187 TLC H3L1 H N N 188 TLC H3L2 H N N 189 TLC H2L1 H N N 190 TLC H2L2 H N N 191 TLC "HO3'" H N N 192 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 SPM N1 C2 sing N N 115 SPM N1 HN11 sing N N 116 SPM N1 HN12 sing N N 117 SPM C2 C3 sing N N 118 SPM C2 H21 sing N N 119 SPM C2 H22 sing N N 120 SPM C3 C4 sing N N 121 SPM C3 H31 sing N N 122 SPM C3 H32 sing N N 123 SPM C4 N5 sing N N 124 SPM C4 H41 sing N N 125 SPM C4 H42 sing N N 126 SPM N5 C6 sing N N 127 SPM N5 HN5 sing N N 128 SPM C6 C7 sing N N 129 SPM C6 H61 sing N N 130 SPM C6 H62 sing N N 131 SPM C7 C8 sing N N 132 SPM C7 H71 sing N N 133 SPM C7 H72 sing N N 134 SPM C8 C9 sing N N 135 SPM C8 H81 sing N N 136 SPM C8 H82 sing N N 137 SPM C9 N10 sing N N 138 SPM C9 H91 sing N N 139 SPM C9 H92 sing N N 140 SPM N10 C11 sing N N 141 SPM N10 HN0 sing N N 142 SPM C11 C12 sing N N 143 SPM C11 H111 sing N N 144 SPM C11 H112 sing N N 145 SPM C12 C13 sing N N 146 SPM C12 H121 sing N N 147 SPM C12 H122 sing N N 148 SPM C13 N14 sing N N 149 SPM C13 H131 sing N N 150 SPM C13 H132 sing N N 151 SPM N14 HN41 sing N N 152 SPM N14 HN42 sing N N 153 TLC P OP1 doub N N 154 TLC P OP2 sing N N 155 TLC P OP3 sing N N 156 TLC P "O5'" sing N N 157 TLC OP2 HOP2 sing N N 158 TLC OP3 HOP3 sing N N 159 TLC "O5'" "C5'" sing N N 160 TLC "C5'" "C4'" sing N N 161 TLC "C5'" "H5'" sing N N 162 TLC "C5'" "H5''" sing N N 163 TLC "C4'" "O4'" sing N N 164 TLC "C4'" "C3'" sing N N 165 TLC "C4'" "H4'" sing N N 166 TLC "O4'" "C1'" sing N N 167 TLC "C1'" N1 sing N N 168 TLC "C1'" "C2'" sing N N 169 TLC "C1'" "H1'" sing N N 170 TLC N1 C6 sing N N 171 TLC N1 C2 sing N N 172 TLC C6 C5 doub N N 173 TLC C6 H6 sing N N 174 TLC C2 O2 doub N N 175 TLC C2 N3 sing N N 176 TLC N3 C4 sing N N 177 TLC N3 HN3 sing N N 178 TLC C4 O4 doub N N 179 TLC C4 C5 sing N N 180 TLC C5 C5M sing N N 181 TLC C5M H71 sing N N 182 TLC C5M H72 sing N N 183 TLC C5M H73 sing N N 184 TLC "C2'" O2L sing N N 185 TLC "C2'" "C3'" sing N N 186 TLC "C2'" "H2'" sing N N 187 TLC O2L C2L sing N N 188 TLC C3L C2L sing N N 189 TLC C3L "C3'" sing N N 190 TLC C3L H3L1 sing N N 191 TLC C3L H3L2 sing N N 192 TLC C2L H2L1 sing N N 193 TLC C2L H2L2 sing N N 194 TLC "C3'" "O3'" sing N N 195 TLC "O3'" "HO3'" sing N N 196 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EI4 'double helix' 1EI4 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.234 -0.125 0.145 0.719 -4.948 -0.287 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.196 -0.201 0.481 6.713 -12.269 -2.214 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.145 -0.222 0.221 0.133 -9.121 -0.709 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.253 -0.081 0.115 13.367 -13.438 1.024 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B TLC 8 1_555 0.004 -0.076 0.112 6.207 -15.814 1.079 5 A_DA5:TLC20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B TLC 7 1_555 0.009 -0.115 0.335 5.354 -23.259 3.940 6 A_DA6:TLC19_B A 6 ? B 19 ? 20 1 1 A TLC 7 1_555 B DA 6 1_555 0.045 -0.067 0.377 -6.277 -22.267 4.292 7 A_TLC7:DA18_B A 7 ? B 18 ? 20 1 1 A TLC 8 1_555 B DA 5 1_555 -0.060 -0.169 0.118 -4.960 -12.338 1.960 8 A_TLC8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.198 -0.113 0.077 -12.168 -10.113 -0.381 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.143 -0.123 0.224 4.791 -6.114 1.974 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.153 -0.169 0.162 3.191 -19.245 -2.167 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.063 -0.001 0.223 3.265 -12.650 0.064 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.378 0.229 3.220 -4.066 -1.325 36.665 0.538 0.053 3.232 -2.097 6.437 36.905 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.589 0.478 3.513 4.028 -6.893 41.940 1.399 -0.375 3.436 -9.526 -5.567 42.659 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.395 0.597 3.027 2.093 8.822 26.396 -0.764 1.296 3.025 18.634 -4.421 27.884 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B TLC 8 1_555 0.197 -0.225 3.381 -0.817 0.652 38.944 -0.419 -0.397 3.372 0.978 1.225 38.958 4 AA_DG4DA5:TLC20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B TLC 8 1_555 A DA 6 1_555 B TLC 7 1_555 0.003 -0.474 3.180 -2.830 0.859 36.529 -0.868 -0.382 3.159 1.367 4.506 36.644 5 AA_DA5DA6:TLC19TLC20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B TLC 7 1_555 A TLC 7 1_555 B DA 6 1_555 0.186 -0.836 3.467 0.353 -1.707 30.462 -1.227 -0.279 3.510 -3.246 -0.671 30.511 6 AA_DA6TLC7:DA18TLC19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A TLC 7 1_555 B DA 6 1_555 A TLC 8 1_555 B DA 5 1_555 -0.074 -0.559 3.179 3.561 -0.289 33.081 -0.930 0.707 3.159 -0.506 -6.231 33.268 7 AA_TLC7TLC8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A TLC 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.223 -0.240 3.407 1.247 -3.524 43.145 0.033 0.429 3.408 -4.782 -1.692 43.299 8 AA_TLC8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.655 0.819 2.972 -2.830 3.757 26.028 0.876 -2.120 2.972 8.257 6.218 26.442 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.273 0.588 3.391 -1.696 -9.897 42.229 1.784 1.554 3.227 -13.508 2.315 43.354 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.193 0.442 3.272 -0.032 7.468 33.789 -0.427 -0.330 3.292 12.658 0.054 34.582 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1EI4 _atom_sites.fract_transf_matrix[1][1] 0.039557 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024661 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015354 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_