data_1EI9 # _entry.id 1EI9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1EI9 RCSB RCSB010601 WWPDB D_1000010601 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1EH5 _pdbx_database_related.details 'PALMITOYL PROTEIN THIOESTERASE 1 COMPLEXED WITH PALMITATE' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EI9 _pdbx_database_status.recvd_initial_deposition_date 2000-02-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bellizzi III, J.J.' 1 'Widom, J.' 2 'Kemp, C.' 3 'Lu, J.Y.' 4 'Das, A.K.' 5 'Hofmann, S.L.' 6 'Clardy, J.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The crystal structure of palmitoyl protein thioesterase 1 and the molecular basis of infantile neuronal ceroid lipofuscinosis.' Proc.Natl.Acad.Sci.USA 97 4573 4578 2000 PNASA6 US 0027-8424 0040 ? 10781062 10.1073/pnas.080508097 1 'Producing Selenomethionine-labeled Proteins with a Baculovirus Expression Vector System' Structure 7 R263 R267 1999 STRUE6 UK 0969-2126 2005 ? ? '10.1016/S0969-2126(00)80020-9' 2 'Mutations in the Palmitoyl Protein Thioesterase Gene Causing Infantile Neuronal Ceroid Lipofuscinosis' Nature 376 584 587 1995 NATUAS UK 0028-0836 0006 ? ? 10.1038/376584a0 3 'Purification and Properties of a Palmitoyl-Protein Thioesterase That Cleaves Palmitate from H-Ras' J.Biol.Chem. 268 22566 22574 1993 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bellizzi III, J.J.' 1 ? primary 'Widom, J.' 2 ? primary 'Kemp, C.' 3 ? primary 'Lu, J.Y.' 4 ? primary 'Das, A.K.' 5 ? primary 'Hofmann, S.L.' 6 ? primary 'Clardy, J.' 7 ? 1 'Bellizzi III, J.J.' 8 ? 1 'Widom, J.' 9 ? 1 'Kemp, C.W.' 10 ? 1 'Clardy, J.' 11 ? 2 'Vesa, J.' 12 ? 2 'Hellsten, E.' 13 ? 2 'Verkruyse, L.A.' 14 ? 2 'Camp, L.A.' 15 ? 2 'Rapola, J.' 16 ? 2 'Santavuori, P.' 17 ? 2 'Hofmann, S.L.' 18 ? 2 'Peltonen, L.' 19 ? 3 'Camp, L.A.' 20 ? 3 'Hofmann, S.L.' 21 ? # _cell.entry_id 1EI9 _cell.length_a 69.350 _cell.length_b 69.350 _cell.length_c 128.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EI9 _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PALMITOYL PROTEIN THIOESTERASE 1' 31447.111 1 3.1.2.22 ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 4 water nat water 18.015 53 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQ GYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH DPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE ; _entity_poly.pdbx_seq_one_letter_code_can ;DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQ GYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH DPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 PRO n 1 3 PRO n 1 4 ALA n 1 5 PRO n 1 6 LEU n 1 7 PRO n 1 8 LEU n 1 9 VAL n 1 10 ILE n 1 11 TRP n 1 12 HIS n 1 13 GLY n 1 14 MET n 1 15 GLY n 1 16 ASP n 1 17 SER n 1 18 CYS n 1 19 CYS n 1 20 ASN n 1 21 PRO n 1 22 LEU n 1 23 SER n 1 24 MET n 1 25 GLY n 1 26 ALA n 1 27 ILE n 1 28 LYS n 1 29 LYS n 1 30 MET n 1 31 VAL n 1 32 GLU n 1 33 LYS n 1 34 LYS n 1 35 ILE n 1 36 PRO n 1 37 GLY n 1 38 ILE n 1 39 HIS n 1 40 VAL n 1 41 LEU n 1 42 SER n 1 43 LEU n 1 44 GLU n 1 45 ILE n 1 46 GLY n 1 47 LYS n 1 48 THR n 1 49 LEU n 1 50 ARG n 1 51 GLU n 1 52 ASP n 1 53 VAL n 1 54 GLU n 1 55 ASN n 1 56 SER n 1 57 PHE n 1 58 PHE n 1 59 LEU n 1 60 ASN n 1 61 VAL n 1 62 ASN n 1 63 SER n 1 64 GLN n 1 65 VAL n 1 66 THR n 1 67 THR n 1 68 VAL n 1 69 CYS n 1 70 GLN n 1 71 ILE n 1 72 LEU n 1 73 ALA n 1 74 LYS n 1 75 ASP n 1 76 PRO n 1 77 LYS n 1 78 LEU n 1 79 GLN n 1 80 GLN n 1 81 GLY n 1 82 TYR n 1 83 ASN n 1 84 ALA n 1 85 MET n 1 86 GLY n 1 87 PHE n 1 88 SER n 1 89 GLN n 1 90 GLY n 1 91 GLY n 1 92 GLN n 1 93 PHE n 1 94 LEU n 1 95 ARG n 1 96 ALA n 1 97 VAL n 1 98 ALA n 1 99 GLN n 1 100 ARG n 1 101 CYS n 1 102 PRO n 1 103 SER n 1 104 PRO n 1 105 PRO n 1 106 MET n 1 107 VAL n 1 108 ASN n 1 109 LEU n 1 110 ILE n 1 111 SER n 1 112 VAL n 1 113 GLY n 1 114 GLY n 1 115 GLN n 1 116 HIS n 1 117 GLN n 1 118 GLY n 1 119 VAL n 1 120 PHE n 1 121 GLY n 1 122 LEU n 1 123 PRO n 1 124 ARG n 1 125 CYS n 1 126 PRO n 1 127 GLY n 1 128 GLU n 1 129 SER n 1 130 SER n 1 131 HIS n 1 132 ILE n 1 133 CYS n 1 134 ASP n 1 135 PHE n 1 136 ILE n 1 137 ARG n 1 138 LYS n 1 139 THR n 1 140 LEU n 1 141 ASN n 1 142 ALA n 1 143 GLY n 1 144 ALA n 1 145 TYR n 1 146 ASN n 1 147 LYS n 1 148 ALA n 1 149 ILE n 1 150 GLN n 1 151 GLU n 1 152 ARG n 1 153 LEU n 1 154 VAL n 1 155 GLN n 1 156 ALA n 1 157 GLU n 1 158 TYR n 1 159 TRP n 1 160 HIS n 1 161 ASP n 1 162 PRO n 1 163 ILE n 1 164 ARG n 1 165 GLU n 1 166 ASP n 1 167 ILE n 1 168 TYR n 1 169 ARG n 1 170 ASN n 1 171 HIS n 1 172 SER n 1 173 ILE n 1 174 PHE n 1 175 LEU n 1 176 ALA n 1 177 ASP n 1 178 ILE n 1 179 ASN n 1 180 GLN n 1 181 GLU n 1 182 ARG n 1 183 GLY n 1 184 VAL n 1 185 ASN n 1 186 GLU n 1 187 SER n 1 188 TYR n 1 189 LYS n 1 190 LYS n 1 191 ASN n 1 192 LEU n 1 193 MET n 1 194 ALA n 1 195 LEU n 1 196 LYS n 1 197 LYS n 1 198 PHE n 1 199 VAL n 1 200 MET n 1 201 VAL n 1 202 LYS n 1 203 PHE n 1 204 LEU n 1 205 ASN n 1 206 ASP n 1 207 THR n 1 208 ILE n 1 209 VAL n 1 210 ASP n 1 211 PRO n 1 212 VAL n 1 213 ASP n 1 214 SER n 1 215 GLU n 1 216 TRP n 1 217 PHE n 1 218 GLY n 1 219 PHE n 1 220 TYR n 1 221 ARG n 1 222 SER n 1 223 GLY n 1 224 GLN n 1 225 ALA n 1 226 LYS n 1 227 GLU n 1 228 THR n 1 229 ILE n 1 230 PRO n 1 231 LEU n 1 232 GLN n 1 233 GLU n 1 234 SER n 1 235 THR n 1 236 LEU n 1 237 TYR n 1 238 THR n 1 239 GLN n 1 240 ASP n 1 241 ARG n 1 242 LEU n 1 243 GLY n 1 244 LEU n 1 245 LYS n 1 246 ALA n 1 247 MET n 1 248 ASP n 1 249 LYS n 1 250 ALA n 1 251 GLY n 1 252 GLN n 1 253 LEU n 1 254 VAL n 1 255 PHE n 1 256 LEU n 1 257 ALA n 1 258 LEU n 1 259 GLU n 1 260 GLY n 1 261 ASP n 1 262 HIS n 1 263 LEU n 1 264 GLN n 1 265 LEU n 1 266 SER n 1 267 GLU n 1 268 GLU n 1 269 TRP n 1 270 PHE n 1 271 TYR n 1 272 ALA n 1 273 HIS n 1 274 ILE n 1 275 ILE n 1 276 PRO n 1 277 PHE n 1 278 LEU n 1 279 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name cattle _entity_src_gen.gene_src_genus Bos _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bos taurus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'unidentified baculovirus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10469 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell 'SF21 CELLS' _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PPT_BOVIN _struct_ref.pdbx_db_accession P45478 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQ GYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWH DPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQD RLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE ; _struct_ref.pdbx_align_begin 28 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EI9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 279 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P45478 _struct_ref_seq.db_align_beg 28 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 306 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 28 _struct_ref_seq.pdbx_auth_seq_align_end 306 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1EI9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.86 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '55% Polypropylene Glycol 400, 0.1 M Bis-Tris pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 200 ? 1 2 200 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 1998-12-06 ? 2 CCD ADSC 1997-07-24 ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9791 1.0 2 0.9789 1.0 3 0.9364 1.0 4 0.9100 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'CHESS BEAMLINE F2' CHESS F2 ? 0.9791,0.9789,0.9364 2 SYNCHROTRON 'CHESS BEAMLINE A1' CHESS A1 0.9100 ? # _reflns.entry_id 1EI9 _reflns.observed_criterion_sigma_I 0.00 _reflns.observed_criterion_sigma_F 0.00 _reflns.d_resolution_low 20.33 _reflns.d_resolution_high 2.25 _reflns.number_obs 14962 _reflns.number_all 15553 _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.6 _reflns.B_iso_Wilson_estimate 24.6 _reflns.pdbx_redundancy 5.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 92.4 _reflns_shell.Rmerge_I_obs 0.125 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1EI9 _refine.ls_number_reflns_obs 14487 _refine.ls_number_reflns_all 15503 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 93.8 _refine.ls_R_factor_obs 0.249 _refine.ls_R_factor_all 0.253 _refine.ls_R_factor_R_work 0.241 _refine.ls_R_factor_R_free 0.297 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 714 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 41.8 _refine.aniso_B[1][1] -1.68 _refine.aniso_B[2][2] -1.68 _refine.aniso_B[3][3] 3.37 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'flat model' _refine.solvent_model_param_ksol 0.453878 _refine.solvent_model_param_bsol 75.8949 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;anisotropic B correction and bulk solvent correction applied. Maximum likelihood target function used. The structure was determined by MAD phasing at 3.0 Angstroms on SeMet protein expressed in baculovirus/insect cells. The model was refined against a 2.25 Angstrom native data set. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh and Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF 1081559.83 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1EI9 _refine_analyze.Luzzati_coordinate_error_obs 0.33 _refine_analyze.Luzzati_sigma_a_obs 0.27 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.34 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2210 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 2319 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.343 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.0 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.90 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.03 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.06 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.98 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.13 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.25 _refine_ls_shell.d_res_low 2.39 _refine_ls_shell.number_reflns_R_work 2195 _refine_ls_shell.R_factor_R_work 0.284 _refine_ls_shell.percent_reflns_obs 91.7 _refine_ls_shell.R_factor_R_free 0.36 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 117 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 CARBOHYDRATE.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1EI9 _struct.title 'CRYSTAL STRUCTURE OF PALMITOYL PROTEIN THIOESTERASE 1' _struct.pdbx_descriptor 'PALMITOYL PROTEIN THIOESTERASE 1 (E.C.3.1.2.22)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EI9 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'alpha/beta hydrolase, glycoprotein, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 24 ? ILE A 35 ? MET A 51 ILE A 62 1 ? 12 HELX_P HELX_P2 2 THR A 48 ? LEU A 59 ? THR A 75 LEU A 86 1 ? 12 HELX_P HELX_P3 3 ASN A 60 ? LYS A 74 ? ASN A 87 LYS A 101 1 ? 15 HELX_P HELX_P4 4 ASP A 75 ? GLN A 79 ? ASP A 102 GLN A 106 5 ? 5 HELX_P HELX_P5 5 GLN A 89 ? CYS A 101 ? GLN A 116 CYS A 128 1 ? 13 HELX_P HELX_P6 6 SER A 130 ? LEU A 140 ? SER A 157 LEU A 167 1 ? 11 HELX_P HELX_P7 7 LEU A 140 ? TYR A 145 ? LEU A 167 TYR A 172 1 ? 6 HELX_P HELX_P8 8 ASN A 146 ? LEU A 153 ? ASN A 173 LEU A 180 1 ? 8 HELX_P HELX_P9 9 VAL A 154 ? TYR A 158 ? VAL A 181 TYR A 185 5 ? 5 HELX_P HELX_P10 10 ARG A 164 ? SER A 172 ? ARG A 191 SER A 199 1 ? 9 HELX_P HELX_P11 11 PHE A 174 ? ASN A 179 ? PHE A 201 ASN A 206 1 ? 6 HELX_P HELX_P12 12 ASN A 185 ? ALA A 194 ? ASN A 212 ALA A 221 1 ? 10 HELX_P HELX_P13 13 PRO A 211 ? PHE A 217 ? PRO A 238 PHE A 244 5 ? 7 HELX_P HELX_P14 14 PRO A 230 ? GLU A 233 ? PRO A 257 GLU A 260 5 ? 4 HELX_P HELX_P15 15 SER A 234 ? GLN A 239 ? SER A 261 GLN A 266 1 ? 6 HELX_P HELX_P16 16 GLY A 243 ? ALA A 250 ? GLY A 270 ALA A 277 1 ? 8 HELX_P HELX_P17 17 SER A 266 ? ILE A 274 ? SER A 293 ILE A 301 1 ? 9 HELX_P HELX_P18 18 ILE A 275 ? LEU A 278 ? ILE A 302 LEU A 305 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 19 SG ? ? A CYS 45 A CYS 46 1_555 ? ? ? ? ? ? ? 2.056 ? ? disulf2 disulf ? ? A CYS 69 SG ? ? ? 1_555 A CYS 101 SG ? ? A CYS 96 A CYS 128 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf3 disulf ? ? A CYS 125 SG ? ? ? 1_555 A CYS 133 SG ? ? A CYS 152 A CYS 160 1_555 ? ? ? ? ? ? ? 2.037 ? ? covale1 covale one ? A ASN 170 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 197 A NAG 400 1_555 ? ? ? ? ? ? ? 1.454 ? N-Glycosylation covale2 covale one ? A ASN 185 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 212 A NAG 410 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale3 covale one ? A ASN 205 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 232 B NAG 1 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation covale4 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.391 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 103 A . ? SER 130 A PRO 104 A ? PRO 131 A 1 -0.36 2 ASP 210 A . ? ASP 237 A PRO 211 A ? PRO 238 A 1 0.98 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 40 ? SER A 42 ? VAL A 67 SER A 69 A 2 LEU A 8 ? TRP A 11 ? LEU A 35 TRP A 38 A 3 TYR A 82 ? PHE A 87 ? TYR A 109 PHE A 114 A 4 MET A 106 ? VAL A 112 ? MET A 133 VAL A 139 A 5 LYS A 197 ? PHE A 203 ? LYS A 224 PHE A 230 A 6 LEU A 253 ? LEU A 258 ? LEU A 280 LEU A 285 B 1 PHE A 219 ? TYR A 220 ? PHE A 246 TYR A 247 B 2 THR A 228 ? ILE A 229 ? THR A 255 ILE A 256 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 41 ? N LEU A 68 O LEU A 8 ? O LEU A 35 A 2 3 N VAL A 9 ? N VAL A 36 O ASN A 83 ? O ASN A 110 A 3 4 O TYR A 82 ? O TYR A 109 N VAL A 107 ? N VAL A 134 A 4 5 N LEU A 109 ? N LEU A 136 O LYS A 197 ? O LYS A 224 A 5 6 N MET A 200 ? N MET A 227 O VAL A 254 ? O VAL A 281 B 1 2 O PHE A 219 ? O PHE A 246 N ILE A 229 ? N ILE A 256 # _database_PDB_matrix.entry_id 1EI9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EI9 _atom_sites.fract_transf_matrix[1][1] 0.014420 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014420 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007789 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'NAG B 1 HAS WRONG CHIRALITY AT ATOM C1' 2 'NAG A 400 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 28 28 ASP ASP A . n A 1 2 PRO 2 29 29 PRO PRO A . n A 1 3 PRO 3 30 30 PRO PRO A . n A 1 4 ALA 4 31 31 ALA ALA A . n A 1 5 PRO 5 32 32 PRO PRO A . n A 1 6 LEU 6 33 33 LEU LEU A . n A 1 7 PRO 7 34 34 PRO PRO A . n A 1 8 LEU 8 35 35 LEU LEU A . n A 1 9 VAL 9 36 36 VAL VAL A . n A 1 10 ILE 10 37 37 ILE ILE A . n A 1 11 TRP 11 38 38 TRP TRP A . n A 1 12 HIS 12 39 39 HIS HIS A . n A 1 13 GLY 13 40 40 GLY GLY A . n A 1 14 MET 14 41 41 MET MET A . n A 1 15 GLY 15 42 42 GLY GLY A . n A 1 16 ASP 16 43 43 ASP ASP A . n A 1 17 SER 17 44 44 SER SER A . n A 1 18 CYS 18 45 45 CYS CYS A . n A 1 19 CYS 19 46 46 CYS CYS A . n A 1 20 ASN 20 47 47 ASN ASN A . n A 1 21 PRO 21 48 48 PRO PRO A . n A 1 22 LEU 22 49 49 LEU LEU A . n A 1 23 SER 23 50 50 SER SER A . n A 1 24 MET 24 51 51 MET MET A . n A 1 25 GLY 25 52 52 GLY GLY A . n A 1 26 ALA 26 53 53 ALA ALA A . n A 1 27 ILE 27 54 54 ILE ILE A . n A 1 28 LYS 28 55 55 LYS LYS A . n A 1 29 LYS 29 56 56 LYS LYS A . n A 1 30 MET 30 57 57 MET MET A . n A 1 31 VAL 31 58 58 VAL VAL A . n A 1 32 GLU 32 59 59 GLU GLU A . n A 1 33 LYS 33 60 60 LYS LYS A . n A 1 34 LYS 34 61 61 LYS LYS A . n A 1 35 ILE 35 62 62 ILE ILE A . n A 1 36 PRO 36 63 63 PRO PRO A . n A 1 37 GLY 37 64 64 GLY GLY A . n A 1 38 ILE 38 65 65 ILE ILE A . n A 1 39 HIS 39 66 66 HIS HIS A . n A 1 40 VAL 40 67 67 VAL VAL A . n A 1 41 LEU 41 68 68 LEU LEU A . n A 1 42 SER 42 69 69 SER SER A . n A 1 43 LEU 43 70 70 LEU LEU A . n A 1 44 GLU 44 71 71 GLU GLU A . n A 1 45 ILE 45 72 72 ILE ILE A . n A 1 46 GLY 46 73 73 GLY GLY A . n A 1 47 LYS 47 74 74 LYS LYS A . n A 1 48 THR 48 75 75 THR THR A . n A 1 49 LEU 49 76 76 LEU LEU A . n A 1 50 ARG 50 77 77 ARG ARG A . n A 1 51 GLU 51 78 78 GLU GLU A . n A 1 52 ASP 52 79 79 ASP ASP A . n A 1 53 VAL 53 80 80 VAL VAL A . n A 1 54 GLU 54 81 81 GLU GLU A . n A 1 55 ASN 55 82 82 ASN ASN A . n A 1 56 SER 56 83 83 SER SER A . n A 1 57 PHE 57 84 84 PHE PHE A . n A 1 58 PHE 58 85 85 PHE PHE A . n A 1 59 LEU 59 86 86 LEU LEU A . n A 1 60 ASN 60 87 87 ASN ASN A . n A 1 61 VAL 61 88 88 VAL VAL A . n A 1 62 ASN 62 89 89 ASN ASN A . n A 1 63 SER 63 90 90 SER SER A . n A 1 64 GLN 64 91 91 GLN GLN A . n A 1 65 VAL 65 92 92 VAL VAL A . n A 1 66 THR 66 93 93 THR THR A . n A 1 67 THR 67 94 94 THR THR A . n A 1 68 VAL 68 95 95 VAL VAL A . n A 1 69 CYS 69 96 96 CYS CYS A . n A 1 70 GLN 70 97 97 GLN GLN A . n A 1 71 ILE 71 98 98 ILE ILE A . n A 1 72 LEU 72 99 99 LEU LEU A . n A 1 73 ALA 73 100 100 ALA ALA A . n A 1 74 LYS 74 101 101 LYS LYS A . n A 1 75 ASP 75 102 102 ASP ASP A . n A 1 76 PRO 76 103 103 PRO PRO A . n A 1 77 LYS 77 104 104 LYS LYS A . n A 1 78 LEU 78 105 105 LEU LEU A . n A 1 79 GLN 79 106 106 GLN GLN A . n A 1 80 GLN 80 107 107 GLN GLN A . n A 1 81 GLY 81 108 108 GLY GLY A . n A 1 82 TYR 82 109 109 TYR TYR A . n A 1 83 ASN 83 110 110 ASN ASN A . n A 1 84 ALA 84 111 111 ALA ALA A . n A 1 85 MET 85 112 112 MET MET A . n A 1 86 GLY 86 113 113 GLY GLY A . n A 1 87 PHE 87 114 114 PHE PHE A . n A 1 88 SER 88 115 115 SER SER A . n A 1 89 GLN 89 116 116 GLN GLN A . n A 1 90 GLY 90 117 117 GLY GLY A . n A 1 91 GLY 91 118 118 GLY GLY A . n A 1 92 GLN 92 119 119 GLN GLN A . n A 1 93 PHE 93 120 120 PHE PHE A . n A 1 94 LEU 94 121 121 LEU LEU A . n A 1 95 ARG 95 122 122 ARG ARG A . n A 1 96 ALA 96 123 123 ALA ALA A . n A 1 97 VAL 97 124 124 VAL VAL A . n A 1 98 ALA 98 125 125 ALA ALA A . n A 1 99 GLN 99 126 126 GLN GLN A . n A 1 100 ARG 100 127 127 ARG ARG A . n A 1 101 CYS 101 128 128 CYS CYS A . n A 1 102 PRO 102 129 129 PRO PRO A . n A 1 103 SER 103 130 130 SER SER A . n A 1 104 PRO 104 131 131 PRO PRO A . n A 1 105 PRO 105 132 132 PRO PRO A . n A 1 106 MET 106 133 133 MET MET A . n A 1 107 VAL 107 134 134 VAL VAL A . n A 1 108 ASN 108 135 135 ASN ASN A . n A 1 109 LEU 109 136 136 LEU LEU A . n A 1 110 ILE 110 137 137 ILE ILE A . n A 1 111 SER 111 138 138 SER SER A . n A 1 112 VAL 112 139 139 VAL VAL A . n A 1 113 GLY 113 140 140 GLY GLY A . n A 1 114 GLY 114 141 141 GLY GLY A . n A 1 115 GLN 115 142 142 GLN GLN A . n A 1 116 HIS 116 143 143 HIS HIS A . n A 1 117 GLN 117 144 144 GLN GLN A . n A 1 118 GLY 118 145 145 GLY GLY A . n A 1 119 VAL 119 146 146 VAL VAL A . n A 1 120 PHE 120 147 147 PHE PHE A . n A 1 121 GLY 121 148 148 GLY GLY A . n A 1 122 LEU 122 149 149 LEU LEU A . n A 1 123 PRO 123 150 150 PRO PRO A . n A 1 124 ARG 124 151 151 ARG ARG A . n A 1 125 CYS 125 152 152 CYS CYS A . n A 1 126 PRO 126 153 153 PRO PRO A . n A 1 127 GLY 127 154 154 GLY GLY A . n A 1 128 GLU 128 155 155 GLU GLU A . n A 1 129 SER 129 156 156 SER SER A . n A 1 130 SER 130 157 157 SER SER A . n A 1 131 HIS 131 158 158 HIS HIS A . n A 1 132 ILE 132 159 159 ILE ILE A . n A 1 133 CYS 133 160 160 CYS CYS A . n A 1 134 ASP 134 161 161 ASP ASP A . n A 1 135 PHE 135 162 162 PHE PHE A . n A 1 136 ILE 136 163 163 ILE ILE A . n A 1 137 ARG 137 164 164 ARG ARG A . n A 1 138 LYS 138 165 165 LYS LYS A . n A 1 139 THR 139 166 166 THR THR A . n A 1 140 LEU 140 167 167 LEU LEU A . n A 1 141 ASN 141 168 168 ASN ASN A . n A 1 142 ALA 142 169 169 ALA ALA A . n A 1 143 GLY 143 170 170 GLY GLY A . n A 1 144 ALA 144 171 171 ALA ALA A . n A 1 145 TYR 145 172 172 TYR TYR A . n A 1 146 ASN 146 173 173 ASN ASN A . n A 1 147 LYS 147 174 174 LYS LYS A . n A 1 148 ALA 148 175 175 ALA ALA A . n A 1 149 ILE 149 176 176 ILE ILE A . n A 1 150 GLN 150 177 177 GLN GLN A . n A 1 151 GLU 151 178 178 GLU GLU A . n A 1 152 ARG 152 179 179 ARG ARG A . n A 1 153 LEU 153 180 180 LEU LEU A . n A 1 154 VAL 154 181 181 VAL VAL A . n A 1 155 GLN 155 182 182 GLN GLN A . n A 1 156 ALA 156 183 183 ALA ALA A . n A 1 157 GLU 157 184 184 GLU GLU A . n A 1 158 TYR 158 185 185 TYR TYR A . n A 1 159 TRP 159 186 186 TRP TRP A . n A 1 160 HIS 160 187 187 HIS HIS A . n A 1 161 ASP 161 188 188 ASP ASP A . n A 1 162 PRO 162 189 189 PRO PRO A . n A 1 163 ILE 163 190 190 ILE ILE A . n A 1 164 ARG 164 191 191 ARG ARG A . n A 1 165 GLU 165 192 192 GLU GLU A . n A 1 166 ASP 166 193 193 ASP ASP A . n A 1 167 ILE 167 194 194 ILE ILE A . n A 1 168 TYR 168 195 195 TYR TYR A . n A 1 169 ARG 169 196 196 ARG ARG A . n A 1 170 ASN 170 197 197 ASN ASN A . n A 1 171 HIS 171 198 198 HIS HIS A . n A 1 172 SER 172 199 199 SER SER A . n A 1 173 ILE 173 200 200 ILE ILE A . n A 1 174 PHE 174 201 201 PHE PHE A . n A 1 175 LEU 175 202 202 LEU LEU A . n A 1 176 ALA 176 203 203 ALA ALA A . n A 1 177 ASP 177 204 204 ASP ASP A . n A 1 178 ILE 178 205 205 ILE ILE A . n A 1 179 ASN 179 206 206 ASN ASN A . n A 1 180 GLN 180 207 207 GLN GLN A . n A 1 181 GLU 181 208 208 GLU GLU A . n A 1 182 ARG 182 209 209 ARG ARG A . n A 1 183 GLY 183 210 210 GLY GLY A . n A 1 184 VAL 184 211 211 VAL VAL A . n A 1 185 ASN 185 212 212 ASN ASN A . n A 1 186 GLU 186 213 213 GLU GLU A . n A 1 187 SER 187 214 214 SER SER A . n A 1 188 TYR 188 215 215 TYR TYR A . n A 1 189 LYS 189 216 216 LYS LYS A . n A 1 190 LYS 190 217 217 LYS LYS A . n A 1 191 ASN 191 218 218 ASN ASN A . n A 1 192 LEU 192 219 219 LEU LEU A . n A 1 193 MET 193 220 220 MET MET A . n A 1 194 ALA 194 221 221 ALA ALA A . n A 1 195 LEU 195 222 222 LEU LEU A . n A 1 196 LYS 196 223 223 LYS LYS A . n A 1 197 LYS 197 224 224 LYS LYS A . n A 1 198 PHE 198 225 225 PHE PHE A . n A 1 199 VAL 199 226 226 VAL VAL A . n A 1 200 MET 200 227 227 MET MET A . n A 1 201 VAL 201 228 228 VAL VAL A . n A 1 202 LYS 202 229 229 LYS LYS A . n A 1 203 PHE 203 230 230 PHE PHE A . n A 1 204 LEU 204 231 231 LEU LEU A . n A 1 205 ASN 205 232 232 ASN ASN A . n A 1 206 ASP 206 233 233 ASP ASP A . n A 1 207 THR 207 234 234 THR THR A . n A 1 208 ILE 208 235 235 ILE ILE A . n A 1 209 VAL 209 236 236 VAL VAL A . n A 1 210 ASP 210 237 237 ASP ASP A . n A 1 211 PRO 211 238 238 PRO PRO A . n A 1 212 VAL 212 239 239 VAL VAL A . n A 1 213 ASP 213 240 240 ASP ASP A . n A 1 214 SER 214 241 241 SER SER A . n A 1 215 GLU 215 242 242 GLU GLU A . n A 1 216 TRP 216 243 243 TRP TRP A . n A 1 217 PHE 217 244 244 PHE PHE A . n A 1 218 GLY 218 245 245 GLY GLY A . n A 1 219 PHE 219 246 246 PHE PHE A . n A 1 220 TYR 220 247 247 TYR TYR A . n A 1 221 ARG 221 248 248 ARG ARG A . n A 1 222 SER 222 249 249 SER SER A . n A 1 223 GLY 223 250 250 GLY GLY A . n A 1 224 GLN 224 251 251 GLN GLN A . n A 1 225 ALA 225 252 252 ALA ALA A . n A 1 226 LYS 226 253 253 LYS LYS A . n A 1 227 GLU 227 254 254 GLU GLU A . n A 1 228 THR 228 255 255 THR THR A . n A 1 229 ILE 229 256 256 ILE ILE A . n A 1 230 PRO 230 257 257 PRO PRO A . n A 1 231 LEU 231 258 258 LEU LEU A . n A 1 232 GLN 232 259 259 GLN GLN A . n A 1 233 GLU 233 260 260 GLU GLU A . n A 1 234 SER 234 261 261 SER SER A . n A 1 235 THR 235 262 262 THR THR A . n A 1 236 LEU 236 263 263 LEU LEU A . n A 1 237 TYR 237 264 264 TYR TYR A . n A 1 238 THR 238 265 265 THR THR A . n A 1 239 GLN 239 266 266 GLN GLN A . n A 1 240 ASP 240 267 267 ASP ASP A . n A 1 241 ARG 241 268 268 ARG ARG A . n A 1 242 LEU 242 269 269 LEU LEU A . n A 1 243 GLY 243 270 270 GLY GLY A . n A 1 244 LEU 244 271 271 LEU LEU A . n A 1 245 LYS 245 272 272 LYS LYS A . n A 1 246 ALA 246 273 273 ALA ALA A . n A 1 247 MET 247 274 274 MET MET A . n A 1 248 ASP 248 275 275 ASP ASP A . n A 1 249 LYS 249 276 276 LYS LYS A . n A 1 250 ALA 250 277 277 ALA ALA A . n A 1 251 GLY 251 278 278 GLY GLY A . n A 1 252 GLN 252 279 279 GLN GLN A . n A 1 253 LEU 253 280 280 LEU LEU A . n A 1 254 VAL 254 281 281 VAL VAL A . n A 1 255 PHE 255 282 282 PHE PHE A . n A 1 256 LEU 256 283 283 LEU LEU A . n A 1 257 ALA 257 284 284 ALA ALA A . n A 1 258 LEU 258 285 285 LEU LEU A . n A 1 259 GLU 259 286 286 GLU GLU A . n A 1 260 GLY 260 287 287 GLY GLY A . n A 1 261 ASP 261 288 288 ASP ASP A . n A 1 262 HIS 262 289 289 HIS HIS A . n A 1 263 LEU 263 290 290 LEU LEU A . n A 1 264 GLN 264 291 291 GLN GLN A . n A 1 265 LEU 265 292 292 LEU LEU A . n A 1 266 SER 266 293 293 SER SER A . n A 1 267 GLU 267 294 294 GLU GLU A . n A 1 268 GLU 268 295 295 GLU GLU A . n A 1 269 TRP 269 296 296 TRP TRP A . n A 1 270 PHE 270 297 297 PHE PHE A . n A 1 271 TYR 271 298 298 TYR TYR A . n A 1 272 ALA 272 299 299 ALA ALA A . n A 1 273 HIS 273 300 300 HIS HIS A . n A 1 274 ILE 274 301 301 ILE ILE A . n A 1 275 ILE 275 302 302 ILE ILE A . n A 1 276 PRO 276 303 303 PRO PRO A . n A 1 277 PHE 277 304 304 PHE PHE A . n A 1 278 LEU 278 305 305 LEU LEU A . n A 1 279 GLU 279 306 306 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 400 400 NAG NAG A . D 3 NAG 1 410 410 NAG NAG A . E 4 HOH 1 500 500 HOH WAT A . E 4 HOH 2 501 501 HOH WAT A . E 4 HOH 3 502 502 HOH WAT A . E 4 HOH 4 503 503 HOH WAT A . E 4 HOH 5 504 504 HOH WAT A . E 4 HOH 6 505 505 HOH WAT A . E 4 HOH 7 506 506 HOH WAT A . E 4 HOH 8 507 507 HOH WAT A . E 4 HOH 9 508 508 HOH WAT A . E 4 HOH 10 509 509 HOH WAT A . E 4 HOH 11 510 510 HOH WAT A . E 4 HOH 12 512 512 HOH WAT A . E 4 HOH 13 513 513 HOH WAT A . E 4 HOH 14 514 514 HOH WAT A . E 4 HOH 15 515 515 HOH WAT A . E 4 HOH 16 517 517 HOH WAT A . E 4 HOH 17 518 518 HOH WAT A . E 4 HOH 18 519 519 HOH WAT A . E 4 HOH 19 520 520 HOH WAT A . E 4 HOH 20 521 521 HOH WAT A . E 4 HOH 21 522 522 HOH WAT A . E 4 HOH 22 523 523 HOH WAT A . E 4 HOH 23 524 524 HOH WAT A . E 4 HOH 24 525 525 HOH WAT A . E 4 HOH 25 526 526 HOH WAT A . E 4 HOH 26 527 527 HOH WAT A . E 4 HOH 27 528 528 HOH WAT A . E 4 HOH 28 529 529 HOH WAT A . E 4 HOH 29 530 530 HOH WAT A . E 4 HOH 30 531 531 HOH WAT A . E 4 HOH 31 532 532 HOH WAT A . E 4 HOH 32 533 533 HOH WAT A . E 4 HOH 33 534 534 HOH WAT A . E 4 HOH 34 535 535 HOH WAT A . E 4 HOH 35 536 536 HOH WAT A . E 4 HOH 36 537 537 HOH WAT A . E 4 HOH 37 538 538 HOH WAT A . E 4 HOH 38 539 539 HOH WAT A . E 4 HOH 39 540 540 HOH WAT A . E 4 HOH 40 542 542 HOH WAT A . E 4 HOH 41 543 543 HOH WAT A . E 4 HOH 42 544 544 HOH WAT A . E 4 HOH 43 545 545 HOH WAT A . E 4 HOH 44 546 546 HOH WAT A . E 4 HOH 45 547 547 HOH WAT A . E 4 HOH 46 548 548 HOH WAT A . E 4 HOH 47 549 549 HOH WAT A . E 4 HOH 48 551 551 HOH WAT A . E 4 HOH 49 552 552 HOH WAT A . E 4 HOH 50 553 553 HOH WAT A . E 4 HOH 51 554 554 HOH WAT A . E 4 HOH 52 555 555 HOH WAT A . E 4 HOH 53 556 556 HOH WAT A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 170 A ASN 197 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 185 A ASN 212 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 205 A ASN 232 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-04-26 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2018-01-24 6 'Structure model' 1 5 2018-01-31 7 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 7 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Database references' 7 7 'Structure model' Advisory 8 7 'Structure model' 'Atomic model' 9 7 'Structure model' 'Data collection' 10 7 'Structure model' 'Derived calculations' 11 7 'Structure model' 'Non-polymer description' 12 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' citation_author 3 6 'Structure model' citation_author 4 7 'Structure model' atom_site 5 7 'Structure model' chem_comp 6 7 'Structure model' database_PDB_caveat 7 7 'Structure model' entity 8 7 'Structure model' pdbx_branch_scheme 9 7 'Structure model' pdbx_chem_comp_identifier 10 7 'Structure model' pdbx_entity_branch 11 7 'Structure model' pdbx_entity_branch_descriptor 12 7 'Structure model' pdbx_entity_branch_link 13 7 'Structure model' pdbx_entity_branch_list 14 7 'Structure model' pdbx_entity_nonpoly 15 7 'Structure model' pdbx_nonpoly_scheme 16 7 'Structure model' pdbx_struct_assembly_gen 17 7 'Structure model' pdbx_validate_chiral 18 7 'Structure model' struct_asym 19 7 'Structure model' struct_conn 20 7 'Structure model' struct_site 21 7 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_citation_author.name' 3 6 'Structure model' '_citation_author.name' 4 7 'Structure model' '_atom_site.B_iso_or_equiv' 5 7 'Structure model' '_atom_site.Cartn_x' 6 7 'Structure model' '_atom_site.Cartn_y' 7 7 'Structure model' '_atom_site.Cartn_z' 8 7 'Structure model' '_atom_site.auth_asym_id' 9 7 'Structure model' '_atom_site.auth_atom_id' 10 7 'Structure model' '_atom_site.auth_comp_id' 11 7 'Structure model' '_atom_site.auth_seq_id' 12 7 'Structure model' '_atom_site.label_asym_id' 13 7 'Structure model' '_atom_site.label_atom_id' 14 7 'Structure model' '_atom_site.label_comp_id' 15 7 'Structure model' '_atom_site.label_entity_id' 16 7 'Structure model' '_atom_site.type_symbol' 17 7 'Structure model' '_chem_comp.formula' 18 7 'Structure model' '_chem_comp.formula_weight' 19 7 'Structure model' '_chem_comp.id' 20 7 'Structure model' '_chem_comp.mon_nstd_flag' 21 7 'Structure model' '_chem_comp.name' 22 7 'Structure model' '_chem_comp.type' 23 7 'Structure model' '_entity.formula_weight' 24 7 'Structure model' '_entity.pdbx_description' 25 7 'Structure model' '_entity.pdbx_number_of_molecules' 26 7 'Structure model' '_entity.type' 27 7 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 28 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 7 'Structure model' '_struct_conn.pdbx_role' 30 7 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 7 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 MOSFLM 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SCALA 'data scaling' . ? 4 TRUNCATE 'data reduction' . ? 5 SOLVE phasing . ? 6 SHARP phasing . ? 7 CNS refinement . ? 8 CCP4 'data scaling' '(SCALA' ? 9 TRUNCATE 'data scaling' . ? 10 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 251 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 LYS _pdbx_validate_close_contact.auth_seq_id_2 253 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.95 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 50 ? ? -121.67 -65.19 2 1 LYS A 61 ? ? -69.59 0.67 3 1 ASN A 87 ? ? -39.81 121.24 4 1 SER A 115 ? ? 52.60 -131.80 5 1 VAL A 134 ? ? -105.01 -74.80 6 1 GLN A 142 ? ? -113.72 78.46 7 1 ARG A 191 ? ? -114.91 73.15 8 1 PHE A 201 ? ? -120.60 -75.10 9 1 LYS A 253 ? ? -123.72 -60.30 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? B NAG 1 ? 'WRONG HAND' . 2 1 C1 ? A NAG 400 ? 'WRONG HAND' . # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 420 n B 2 NAG 2 B NAG 2 ? NAG 421 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][a-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH #