HEADER SIGNALING PROTEIN 04-MAR-00 1EJQ TITLE SOLUTION STRUCTURE OF THE SYNDECAN-4 WHOLE CYTOPLASMIC DOMAIN IN THE TITLE 2 PRESENCE OF PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNDECAN-4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: WHOLE CYTOPLASMIC DOMAIN (RESIDUES 171-198); COMPND 5 SYNONYM: AMPHIGLYCAN, RYUDOCAN CORE PROTEIN, SYND4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 OF THIS PETIDE OCCURS NATURALLY IN HUMANS (HOMO SAPIENS). KEYWDS SYMMETRIC DIMER, COMPLEXED WITH PIP2, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 MDLTYP MINIMIZED AVERAGE AUTHOR J.SHIN,E.S.OH,D.LEE,J.R.COUCHMAN,W.LEE REVDAT 5 29-MAY-24 1EJQ 1 REMARK REVDAT 4 16-FEB-22 1EJQ 1 REMARK REVDAT 3 24-FEB-09 1EJQ 1 VERSN REVDAT 2 07-JAN-03 1EJQ 1 REMARK REVDAT 1 07-MAR-01 1EJQ 0 JRNL AUTH J.SHIN,E.S.OH,D.LEE,J.R.COUCHMAN,W.LEE JRNL TITL SOLUTION STRUCTURE OF THE SYNDECAN-4 WHOLE CYTOPLASMIC JRNL TITL 2 DOMAIN IN THE PRESENCE OF PHOSPHATIDYLINOSITOL JRNL TITL 3 4,5-BISPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER, A.T (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EJQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1000010648. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 7.4; 7.4; 7.4 REMARK 210 IONIC STRENGTH : 50MM SODIUM PHOSPHATE; 50MM REMARK 210 SODIUM PHOSPHATE; 50MM SODIUM REMARK 210 PHOSPHATE REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2-4MM SYNDECAN-4 CYTOPLASMIC REMARK 210 DOMAIN;MOLAR RATIO OF 4: REMARK 210 1(SYNDECAN-4 PEPTIDE:PIP2);50MM REMARK 210 SODIUM PHOSPHATE;90% H2O 10% D2O; REMARK 210 2-4MM SYNDECAN-4 CYTOPLASMIC REMARK 210 DOMAIN;MOLAR RATIO OF 4: REMARK 210 1(SYNDECAN-4 PEPTIDE:PIP2);50MM REMARK 210 SODIUM PHOSPHATE;90% H2O 10% D2O; REMARK 210 2-4MM SYNDECAN-4 CYTOPLASMIC REMARK 210 DOMAIN;MOLAR RATIO OF 4: REMARK 210 1(SYNDECAN-4 PEPTIDE:PIP2);50MM REMARK 210 SODIUM PHOSPHATE;90% H2O 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, SPARKY 3.6 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 90 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 2 -143.65 -70.42 REMARK 500 1 LYS A 3 165.39 -48.92 REMARK 500 1 LYS A 5 93.94 -163.42 REMARK 500 1 TYR A 10 -79.01 -159.16 REMARK 500 1 ASP A 11 57.73 -157.16 REMARK 500 1 ILE A 17 60.87 -158.47 REMARK 500 1 LYS A 19 74.58 172.25 REMARK 500 1 ALA A 21 49.14 -159.60 REMARK 500 1 THR A 23 -148.29 -178.13 REMARK 500 1 MET B 2 -143.58 -70.49 REMARK 500 1 LYS B 3 165.38 -49.02 REMARK 500 1 LYS B 5 93.95 -163.35 REMARK 500 1 TYR B 10 -79.12 -159.29 REMARK 500 1 ASP B 11 57.70 -157.07 REMARK 500 1 ILE B 17 60.71 -158.42 REMARK 500 1 LYS B 19 74.52 172.22 REMARK 500 1 ALA B 21 49.08 -159.52 REMARK 500 1 THR B 23 -148.32 -178.17 REMARK 500 2 MET A 2 59.07 -91.53 REMARK 500 2 LYS A 3 -156.32 51.95 REMARK 500 2 LYS A 4 51.82 -90.59 REMARK 500 2 ASP A 11 67.78 -151.86 REMARK 500 2 ILE A 17 54.45 -157.84 REMARK 500 2 LYS A 19 21.55 -163.44 REMARK 500 2 PRO A 22 -165.40 -74.12 REMARK 500 2 THR A 23 -87.27 -92.44 REMARK 500 2 PHE A 26 -50.09 -144.07 REMARK 500 2 MET B 2 58.91 -91.45 REMARK 500 2 LYS B 3 -156.17 52.08 REMARK 500 2 LYS B 4 51.68 -90.66 REMARK 500 2 ASP B 11 67.47 -151.79 REMARK 500 2 ILE B 17 55.23 -157.54 REMARK 500 2 LYS B 19 21.24 -163.07 REMARK 500 2 PRO B 22 -165.54 -74.14 REMARK 500 2 THR B 23 -87.33 -92.35 REMARK 500 2 PHE B 26 -50.10 -144.15 REMARK 500 3 SER A 9 65.19 -169.78 REMARK 500 3 TYR A 10 -70.70 -109.42 REMARK 500 3 ILE A 17 64.28 -157.63 REMARK 500 3 LYS A 19 68.83 -170.49 REMARK 500 3 LYS A 20 -168.80 -66.31 REMARK 500 3 THR A 23 88.40 57.97 REMARK 500 3 SER B 9 65.05 -169.86 REMARK 500 3 TYR B 10 -70.55 -109.40 REMARK 500 3 ILE B 17 64.46 -158.04 REMARK 500 3 LYS B 19 68.16 -170.43 REMARK 500 3 LYS B 20 -168.82 -65.54 REMARK 500 3 THR B 23 88.44 58.00 REMARK 500 4 TYR A 10 77.89 57.99 REMARK 500 4 ILE A 17 69.06 -159.88 REMARK 500 REMARK 500 THIS ENTRY HAS 233 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 1 0.15 SIDE CHAIN REMARK 500 1 ARG B 1 0.15 SIDE CHAIN REMARK 500 2 ARG A 1 0.30 SIDE CHAIN REMARK 500 2 ARG B 1 0.30 SIDE CHAIN REMARK 500 3 ARG A 1 0.32 SIDE CHAIN REMARK 500 3 ARG B 1 0.32 SIDE CHAIN REMARK 500 4 ARG A 1 0.30 SIDE CHAIN REMARK 500 4 ARG B 1 0.30 SIDE CHAIN REMARK 500 5 ARG A 1 0.30 SIDE CHAIN REMARK 500 5 ARG B 1 0.30 SIDE CHAIN REMARK 500 6 ARG A 1 0.32 SIDE CHAIN REMARK 500 6 ARG B 1 0.32 SIDE CHAIN REMARK 500 7 ARG A 1 0.22 SIDE CHAIN REMARK 500 7 ARG B 1 0.22 SIDE CHAIN REMARK 500 8 ARG A 1 0.23 SIDE CHAIN REMARK 500 8 ARG B 1 0.23 SIDE CHAIN REMARK 500 9 ARG A 1 0.17 SIDE CHAIN REMARK 500 9 ARG B 1 0.17 SIDE CHAIN REMARK 500 10 ARG A 1 0.22 SIDE CHAIN REMARK 500 10 ARG B 1 0.22 SIDE CHAIN REMARK 500 11 ARG A 1 0.25 SIDE CHAIN REMARK 500 11 ARG B 1 0.24 SIDE CHAIN REMARK 500 12 ARG A 1 0.25 SIDE CHAIN REMARK 500 12 ARG B 1 0.25 SIDE CHAIN REMARK 500 13 ARG A 1 0.24 SIDE CHAIN REMARK 500 13 ARG B 1 0.24 SIDE CHAIN REMARK 500 14 ARG A 1 0.20 SIDE CHAIN REMARK 500 14 ARG B 1 0.20 SIDE CHAIN REMARK 500 15 ARG A 1 0.30 SIDE CHAIN REMARK 500 15 ARG B 1 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EJP RELATED DB: PDB REMARK 900 1EJP CONTAINS SOLUTION STRUCTURE OF THE SYNDECAN-4 WHOLE REMARK 900 CYTOPLASMIC IN FREE STATE DBREF 1EJQ A 1 28 UNP P31431 SDC4_HUMAN 171 198 DBREF 1EJQ B 1 28 UNP P31431 SDC4_HUMAN 171 198 SEQRES 1 A 28 ARG MET LYS LYS LYS ASP GLU GLY SER TYR ASP LEU GLY SEQRES 2 A 28 LYS LYS PRO ILE TYR LYS LYS ALA PRO THR ASN GLU PHE SEQRES 3 A 28 TYR ALA SEQRES 1 B 28 ARG MET LYS LYS LYS ASP GLU GLY SER TYR ASP LEU GLY SEQRES 2 B 28 LYS LYS PRO ILE TYR LYS LYS ALA PRO THR ASN GLU PHE SEQRES 3 B 28 TYR ALA CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1