data_1EK0 # _entry.id 1EK0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EK0 pdb_00001ek0 10.2210/pdb1ek0/pdb RCSB RCSB010658 ? ? WWPDB D_1000010658 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-04-17 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2023-08-09 6 'Structure model' 1 5 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' diffrn_source 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' pdbx_struct_conn_angle 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_ref_seq_dif 10 5 'Structure model' struct_site 11 6 'Structure model' pdbx_entry_details 12 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.value' 19 5 'Structure model' '_struct_conn.pdbx_dist_value' 20 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 33 5 'Structure model' '_struct_ref_seq_dif.details' 34 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EK0 _pdbx_database_status.recvd_initial_deposition_date 2000-03-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Esters, H.' 1 'Scheidig, A.J.' 2 # _citation.id primary _citation.title ;High-resolution crystal structure of S. cerevisiae Ypt51(DeltaC15)-GppNHp, a small GTP-binding protein involved in regulation of endocytosis. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 298 _citation.page_first 111 _citation.page_last 121 _citation.year 2000 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10756108 _citation.pdbx_database_id_DOI 10.1006/jmbi.2000.3645 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Esters, H.' 1 ? primary 'Alexandrov, K.' 2 ? primary 'Constantinescu, A.T.' 3 ? primary 'Goody, R.S.' 4 ? primary 'Scheidig, A.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN (GTP-BINDING PROTEIN YPT51)' 18963.666 1 ? ? 'GTPASE DOMAIN' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 4 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 5 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 6 water nat water 18.015 209 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAP(MHO)YYRNA QAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID(MHO)LQEGGERKVAREEGEKLAEEKGLLFFETSAKT GENVNDVFLGIGEKIPLK ; _entity_poly.pdbx_seq_one_letter_code_can ;VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAAL VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF LGIGEKIPLK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'NICKEL (II) ION' NI 4 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 5 "GUANOSINE-5'-DIPHOSPHATE" GDP 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 THR n 1 3 SER n 1 4 ILE n 1 5 LYS n 1 6 LEU n 1 7 VAL n 1 8 LEU n 1 9 LEU n 1 10 GLY n 1 11 GLU n 1 12 ALA n 1 13 ALA n 1 14 VAL n 1 15 GLY n 1 16 LYS n 1 17 SER n 1 18 SER n 1 19 ILE n 1 20 VAL n 1 21 LEU n 1 22 ARG n 1 23 PHE n 1 24 VAL n 1 25 SER n 1 26 ASN n 1 27 ASP n 1 28 PHE n 1 29 ALA n 1 30 GLU n 1 31 ASN n 1 32 LYS n 1 33 GLU n 1 34 PRO n 1 35 THR n 1 36 ILE n 1 37 GLY n 1 38 ALA n 1 39 ALA n 1 40 PHE n 1 41 LEU n 1 42 THR n 1 43 GLN n 1 44 ARG n 1 45 VAL n 1 46 THR n 1 47 ILE n 1 48 ASN n 1 49 GLU n 1 50 HIS n 1 51 THR n 1 52 VAL n 1 53 LYS n 1 54 PHE n 1 55 GLU n 1 56 ILE n 1 57 TRP n 1 58 ASP n 1 59 THR n 1 60 ALA n 1 61 GLY n 1 62 GLN n 1 63 GLU n 1 64 ARG n 1 65 PHE n 1 66 ALA n 1 67 SER n 1 68 LEU n 1 69 ALA n 1 70 PRO n 1 71 MHO n 1 72 TYR n 1 73 TYR n 1 74 ARG n 1 75 ASN n 1 76 ALA n 1 77 GLN n 1 78 ALA n 1 79 ALA n 1 80 LEU n 1 81 VAL n 1 82 VAL n 1 83 TYR n 1 84 ASP n 1 85 VAL n 1 86 THR n 1 87 LYS n 1 88 PRO n 1 89 GLN n 1 90 SER n 1 91 PHE n 1 92 ILE n 1 93 LYS n 1 94 ALA n 1 95 ARG n 1 96 HIS n 1 97 TRP n 1 98 VAL n 1 99 LYS n 1 100 GLU n 1 101 LEU n 1 102 HIS n 1 103 GLU n 1 104 GLN n 1 105 ALA n 1 106 SER n 1 107 LYS n 1 108 ASP n 1 109 ILE n 1 110 ILE n 1 111 ILE n 1 112 ALA n 1 113 LEU n 1 114 VAL n 1 115 GLY n 1 116 ASN n 1 117 LYS n 1 118 ILE n 1 119 ASP n 1 120 MHO n 1 121 LEU n 1 122 GLN n 1 123 GLU n 1 124 GLY n 1 125 GLY n 1 126 GLU n 1 127 ARG n 1 128 LYS n 1 129 VAL n 1 130 ALA n 1 131 ARG n 1 132 GLU n 1 133 GLU n 1 134 GLY n 1 135 GLU n 1 136 LYS n 1 137 LEU n 1 138 ALA n 1 139 GLU n 1 140 GLU n 1 141 LYS n 1 142 GLY n 1 143 LEU n 1 144 LEU n 1 145 PHE n 1 146 PHE n 1 147 GLU n 1 148 THR n 1 149 SER n 1 150 ALA n 1 151 LYS n 1 152 THR n 1 153 GLY n 1 154 GLU n 1 155 ASN n 1 156 VAL n 1 157 ASN n 1 158 ASP n 1 159 VAL n 1 160 PHE n 1 161 LEU n 1 162 GLY n 1 163 ILE n 1 164 GLY n 1 165 GLU n 1 166 LYS n 1 167 ILE n 1 168 PRO n 1 169 LEU n 1 170 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21/DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MHO 'L-peptide linking' n S-OXYMETHIONINE ? 'C5 H11 N O3 S' 165.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 5 5 VAL VAL A . n A 1 2 THR 2 6 6 THR THR A . n A 1 3 SER 3 7 7 SER SER A . n A 1 4 ILE 4 8 8 ILE ILE A . n A 1 5 LYS 5 9 9 LYS LYS A . n A 1 6 LEU 6 10 10 LEU LEU A . n A 1 7 VAL 7 11 11 VAL VAL A . n A 1 8 LEU 8 12 12 LEU LEU A . n A 1 9 LEU 9 13 13 LEU LEU A . n A 1 10 GLY 10 14 14 GLY GLY A . n A 1 11 GLU 11 15 15 GLU GLU A . n A 1 12 ALA 12 16 16 ALA ALA A . n A 1 13 ALA 13 17 17 ALA ALA A . n A 1 14 VAL 14 18 18 VAL VAL A . n A 1 15 GLY 15 19 19 GLY GLY A . n A 1 16 LYS 16 20 20 LYS LYS A . n A 1 17 SER 17 21 21 SER SER A . n A 1 18 SER 18 22 22 SER SER A . n A 1 19 ILE 19 23 23 ILE ILE A . n A 1 20 VAL 20 24 24 VAL VAL A . n A 1 21 LEU 21 25 25 LEU LEU A . n A 1 22 ARG 22 26 26 ARG ARG A . n A 1 23 PHE 23 27 27 PHE PHE A . n A 1 24 VAL 24 28 28 VAL VAL A . n A 1 25 SER 25 29 29 SER SER A . n A 1 26 ASN 26 30 30 ASN ASN A . n A 1 27 ASP 27 31 31 ASP ASP A . n A 1 28 PHE 28 32 32 PHE PHE A . n A 1 29 ALA 29 33 33 ALA ALA A . n A 1 30 GLU 30 34 34 GLU GLU A . n A 1 31 ASN 31 35 35 ASN ASN A . n A 1 32 LYS 32 36 36 LYS LYS A . n A 1 33 GLU 33 37 37 GLU GLU A . n A 1 34 PRO 34 38 38 PRO PRO A . n A 1 35 THR 35 39 39 THR THR A . n A 1 36 ILE 36 40 40 ILE ILE A . n A 1 37 GLY 37 41 41 GLY GLY A . n A 1 38 ALA 38 42 42 ALA ALA A . n A 1 39 ALA 39 43 43 ALA ALA A . n A 1 40 PHE 40 44 44 PHE PHE A . n A 1 41 LEU 41 45 45 LEU LEU A . n A 1 42 THR 42 46 46 THR THR A . n A 1 43 GLN 43 47 47 GLN GLN A . n A 1 44 ARG 44 48 48 ARG ARG A . n A 1 45 VAL 45 49 49 VAL VAL A . n A 1 46 THR 46 50 50 THR THR A . n A 1 47 ILE 47 51 51 ILE ILE A . n A 1 48 ASN 48 52 52 ASN ASN A . n A 1 49 GLU 49 53 53 GLU GLU A . n A 1 50 HIS 50 54 54 HIS HIS A . n A 1 51 THR 51 55 55 THR THR A . n A 1 52 VAL 52 56 56 VAL VAL A . n A 1 53 LYS 53 57 57 LYS LYS A . n A 1 54 PHE 54 58 58 PHE PHE A . n A 1 55 GLU 55 59 59 GLU GLU A . n A 1 56 ILE 56 60 60 ILE ILE A . n A 1 57 TRP 57 61 61 TRP TRP A . n A 1 58 ASP 58 62 62 ASP ASP A . n A 1 59 THR 59 63 63 THR THR A . n A 1 60 ALA 60 64 64 ALA ALA A . n A 1 61 GLY 61 65 65 GLY GLY A . n A 1 62 GLN 62 66 66 GLN GLN A . n A 1 63 GLU 63 67 67 GLU GLU A . n A 1 64 ARG 64 68 68 ARG ARG A . n A 1 65 PHE 65 69 69 PHE PHE A . n A 1 66 ALA 66 70 70 ALA ALA A . n A 1 67 SER 67 71 71 SER SER A . n A 1 68 LEU 68 72 72 LEU LEU A . n A 1 69 ALA 69 73 73 ALA ALA A . n A 1 70 PRO 70 74 74 PRO PRO A . n A 1 71 MHO 71 75 75 MHO MHO A . n A 1 72 TYR 72 76 76 TYR TYR A . n A 1 73 TYR 73 77 77 TYR TYR A . n A 1 74 ARG 74 78 78 ARG ARG A . n A 1 75 ASN 75 79 79 ASN ASN A . n A 1 76 ALA 76 80 80 ALA ALA A . n A 1 77 GLN 77 81 81 GLN GLN A . n A 1 78 ALA 78 82 82 ALA ALA A . n A 1 79 ALA 79 83 83 ALA ALA A . n A 1 80 LEU 80 84 84 LEU LEU A . n A 1 81 VAL 81 85 85 VAL VAL A . n A 1 82 VAL 82 86 86 VAL VAL A . n A 1 83 TYR 83 87 87 TYR TYR A . n A 1 84 ASP 84 88 88 ASP ASP A . n A 1 85 VAL 85 89 89 VAL VAL A . n A 1 86 THR 86 90 90 THR THR A . n A 1 87 LYS 87 91 91 LYS LYS A . n A 1 88 PRO 88 92 92 PRO PRO A . n A 1 89 GLN 89 93 93 GLN GLN A . n A 1 90 SER 90 94 94 SER SER A . n A 1 91 PHE 91 95 95 PHE PHE A . n A 1 92 ILE 92 96 96 ILE ILE A . n A 1 93 LYS 93 97 97 LYS LYS A . n A 1 94 ALA 94 98 98 ALA ALA A . n A 1 95 ARG 95 99 99 ARG ARG A . n A 1 96 HIS 96 100 100 HIS HIS A . n A 1 97 TRP 97 101 101 TRP TRP A . n A 1 98 VAL 98 102 102 VAL VAL A . n A 1 99 LYS 99 103 103 LYS LYS A . n A 1 100 GLU 100 104 104 GLU GLU A . n A 1 101 LEU 101 105 105 LEU LEU A . n A 1 102 HIS 102 106 106 HIS HIS A . n A 1 103 GLU 103 107 107 GLU GLU A . n A 1 104 GLN 104 108 108 GLN GLN A . n A 1 105 ALA 105 109 109 ALA ALA A . n A 1 106 SER 106 110 110 SER SER A . n A 1 107 LYS 107 111 111 LYS LYS A . n A 1 108 ASP 108 112 112 ASP ASP A . n A 1 109 ILE 109 113 113 ILE ILE A . n A 1 110 ILE 110 114 114 ILE ILE A . n A 1 111 ILE 111 115 115 ILE ILE A . n A 1 112 ALA 112 116 116 ALA ALA A . n A 1 113 LEU 113 117 117 LEU LEU A . n A 1 114 VAL 114 118 118 VAL VAL A . n A 1 115 GLY 115 119 119 GLY GLY A . n A 1 116 ASN 116 120 120 ASN ASN A . n A 1 117 LYS 117 121 121 LYS LYS A . n A 1 118 ILE 118 122 122 ILE ILE A . n A 1 119 ASP 119 123 123 ASP ASP A . n A 1 120 MHO 120 124 124 MHO MHO A . n A 1 121 LEU 121 125 125 LEU LEU A . n A 1 122 GLN 122 126 126 GLN GLN A . n A 1 123 GLU 123 127 127 GLU GLU A . n A 1 124 GLY 124 128 128 GLY GLY A . n A 1 125 GLY 125 129 129 GLY GLY A . n A 1 126 GLU 126 130 130 GLU GLU A . n A 1 127 ARG 127 131 131 ARG ARG A . n A 1 128 LYS 128 132 132 LYS LYS A . n A 1 129 VAL 129 133 133 VAL VAL A . n A 1 130 ALA 130 134 134 ALA ALA A . n A 1 131 ARG 131 135 135 ARG ARG A . n A 1 132 GLU 132 136 136 GLU GLU A . n A 1 133 GLU 133 137 137 GLU GLU A . n A 1 134 GLY 134 138 138 GLY GLY A . n A 1 135 GLU 135 139 139 GLU GLU A . n A 1 136 LYS 136 140 140 LYS LYS A . n A 1 137 LEU 137 141 141 LEU LEU A . n A 1 138 ALA 138 142 142 ALA ALA A . n A 1 139 GLU 139 143 143 GLU GLU A . n A 1 140 GLU 140 144 144 GLU GLU A . n A 1 141 LYS 141 145 145 LYS LYS A . n A 1 142 GLY 142 146 146 GLY GLY A . n A 1 143 LEU 143 147 147 LEU LEU A . n A 1 144 LEU 144 148 148 LEU LEU A . n A 1 145 PHE 145 149 149 PHE PHE A . n A 1 146 PHE 146 150 150 PHE PHE A . n A 1 147 GLU 147 151 151 GLU GLU A . n A 1 148 THR 148 152 152 THR THR A . n A 1 149 SER 149 153 153 SER SER A . n A 1 150 ALA 150 154 154 ALA ALA A . n A 1 151 LYS 151 155 155 LYS LYS A . n A 1 152 THR 152 156 156 THR THR A . n A 1 153 GLY 153 157 157 GLY GLY A . n A 1 154 GLU 154 158 158 GLU GLU A . n A 1 155 ASN 155 159 159 ASN ASN A . n A 1 156 VAL 156 160 160 VAL VAL A . n A 1 157 ASN 157 161 161 ASN ASN A . n A 1 158 ASP 158 162 162 ASP ASP A . n A 1 159 VAL 159 163 163 VAL VAL A . n A 1 160 PHE 160 164 164 PHE PHE A . n A 1 161 LEU 161 165 165 LEU LEU A . n A 1 162 GLY 162 166 166 GLY GLY A . n A 1 163 ILE 163 167 167 ILE ILE A . n A 1 164 GLY 164 168 168 GLY GLY A . n A 1 165 GLU 165 169 169 GLU GLU A . n A 1 166 LYS 166 170 170 LYS LYS A . n A 1 167 ILE 167 171 171 ILE ILE A . n A 1 168 PRO 168 172 172 PRO PRO A . n A 1 169 LEU 169 173 173 LEU LEU A . n A 1 170 LYS 170 174 174 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 601 601 MG MG A . C 3 NI 1 602 602 NI NI A . D 4 GNP 1 501 501 GNP GNP A . E 5 GDP 1 502 502 GDP GDP A . F 6 HOH 1 1001 1001 HOH HOH A . F 6 HOH 2 1002 1002 HOH HOH A . F 6 HOH 3 1003 1003 HOH HOH A . F 6 HOH 4 1004 1004 HOH HOH A . F 6 HOH 5 1005 1005 HOH HOH A . F 6 HOH 6 1006 1006 HOH HOH A . F 6 HOH 7 1007 1007 HOH HOH A . F 6 HOH 8 1008 1008 HOH HOH A . F 6 HOH 9 1009 1009 HOH HOH A . F 6 HOH 10 1010 1010 HOH HOH A . F 6 HOH 11 1011 1011 HOH HOH A . F 6 HOH 12 1012 1012 HOH HOH A . F 6 HOH 13 1013 1013 HOH HOH A . F 6 HOH 14 1014 1014 HOH HOH A . F 6 HOH 15 1015 1015 HOH HOH A . F 6 HOH 16 1016 1016 HOH HOH A . F 6 HOH 17 1017 1017 HOH HOH A . F 6 HOH 18 1018 1018 HOH HOH A . F 6 HOH 19 1019 1019 HOH HOH A . F 6 HOH 20 1020 1020 HOH HOH A . F 6 HOH 21 1021 1021 HOH HOH A . F 6 HOH 22 1022 1022 HOH HOH A . F 6 HOH 23 1023 1023 HOH HOH A . F 6 HOH 24 1024 1024 HOH HOH A . F 6 HOH 25 1025 1025 HOH HOH A . F 6 HOH 26 1026 1026 HOH HOH A . F 6 HOH 27 1027 1027 HOH HOH A . F 6 HOH 28 1028 1028 HOH HOH A . F 6 HOH 29 1029 1029 HOH HOH A . F 6 HOH 30 1030 1030 HOH HOH A . F 6 HOH 31 1031 1031 HOH HOH A . F 6 HOH 32 1032 1032 HOH HOH A . F 6 HOH 33 1033 1033 HOH HOH A . F 6 HOH 34 1034 1034 HOH HOH A . F 6 HOH 35 1035 1035 HOH HOH A . F 6 HOH 36 1036 1036 HOH HOH A . F 6 HOH 37 1037 1037 HOH HOH A . F 6 HOH 38 1038 1038 HOH HOH A . F 6 HOH 39 1039 1039 HOH HOH A . F 6 HOH 40 1040 1040 HOH HOH A . F 6 HOH 41 1041 1041 HOH HOH A . F 6 HOH 42 1042 1042 HOH HOH A . F 6 HOH 43 1043 1043 HOH HOH A . F 6 HOH 44 1044 1044 HOH HOH A . F 6 HOH 45 1045 1045 HOH HOH A . F 6 HOH 46 1046 1046 HOH HOH A . F 6 HOH 47 1047 1047 HOH HOH A . F 6 HOH 48 1048 1048 HOH HOH A . F 6 HOH 49 1049 1049 HOH HOH A . F 6 HOH 50 1050 1050 HOH HOH A . F 6 HOH 51 1051 1051 HOH HOH A . F 6 HOH 52 1052 1052 HOH HOH A . F 6 HOH 53 1053 1053 HOH HOH A . F 6 HOH 54 1054 1054 HOH HOH A . F 6 HOH 55 1055 1055 HOH HOH A . F 6 HOH 56 1056 1056 HOH HOH A . F 6 HOH 57 1057 1057 HOH HOH A . F 6 HOH 58 1058 1058 HOH HOH A . F 6 HOH 59 1059 1059 HOH HOH A . F 6 HOH 60 1060 1060 HOH HOH A . F 6 HOH 61 1061 1061 HOH HOH A . F 6 HOH 62 1062 1062 HOH HOH A . F 6 HOH 63 1063 1063 HOH HOH A . F 6 HOH 64 1064 1064 HOH HOH A . F 6 HOH 65 1065 1065 HOH HOH A . F 6 HOH 66 1066 1066 HOH HOH A . F 6 HOH 67 1067 1067 HOH HOH A . F 6 HOH 68 1068 1068 HOH HOH A . F 6 HOH 69 1069 1069 HOH HOH A . F 6 HOH 70 1070 1070 HOH HOH A . F 6 HOH 71 1071 1071 HOH HOH A . F 6 HOH 72 1072 1072 HOH HOH A . F 6 HOH 73 1073 1073 HOH HOH A . F 6 HOH 74 1074 1074 HOH HOH A . F 6 HOH 75 1075 1075 HOH HOH A . F 6 HOH 76 1076 1076 HOH HOH A . F 6 HOH 77 1077 1077 HOH HOH A . F 6 HOH 78 1078 1078 HOH HOH A . F 6 HOH 79 1079 1079 HOH HOH A . F 6 HOH 80 1080 1080 HOH HOH A . F 6 HOH 81 1081 1081 HOH HOH A . F 6 HOH 82 1082 1082 HOH HOH A . F 6 HOH 83 1083 1083 HOH HOH A . F 6 HOH 84 1084 1084 HOH HOH A . F 6 HOH 85 1085 1085 HOH HOH A . F 6 HOH 86 1086 1086 HOH HOH A . F 6 HOH 87 1087 1087 HOH HOH A . F 6 HOH 88 1088 1088 HOH HOH A . F 6 HOH 89 1089 1089 HOH HOH A . F 6 HOH 90 1090 1090 HOH HOH A . F 6 HOH 91 1091 1091 HOH HOH A . F 6 HOH 92 1092 1092 HOH HOH A . F 6 HOH 93 1093 1093 HOH HOH A . F 6 HOH 94 1094 1094 HOH HOH A . F 6 HOH 95 1095 1095 HOH HOH A . F 6 HOH 96 1096 1096 HOH HOH A . F 6 HOH 97 1097 1097 HOH HOH A . F 6 HOH 98 1098 1098 HOH HOH A . F 6 HOH 99 1099 1099 HOH HOH A . F 6 HOH 100 1100 1100 HOH HOH A . F 6 HOH 101 1101 1101 HOH HOH A . F 6 HOH 102 1102 1102 HOH HOH A . F 6 HOH 103 1103 1103 HOH HOH A . F 6 HOH 104 1104 1104 HOH HOH A . F 6 HOH 105 1105 1105 HOH HOH A . F 6 HOH 106 1106 1106 HOH HOH A . F 6 HOH 107 1107 1107 HOH HOH A . F 6 HOH 108 1108 1108 HOH HOH A . F 6 HOH 109 1109 1109 HOH HOH A . F 6 HOH 110 1110 1110 HOH HOH A . F 6 HOH 111 1111 1111 HOH HOH A . F 6 HOH 112 1112 1112 HOH HOH A . F 6 HOH 113 1113 1113 HOH HOH A . F 6 HOH 114 1114 1114 HOH HOH A . F 6 HOH 115 1115 1115 HOH HOH A . F 6 HOH 116 1116 1116 HOH HOH A . F 6 HOH 117 1117 1117 HOH HOH A . F 6 HOH 118 1118 1118 HOH HOH A . F 6 HOH 119 1119 1119 HOH HOH A . F 6 HOH 120 1120 1120 HOH HOH A . F 6 HOH 121 1121 1121 HOH HOH A . F 6 HOH 122 1122 1122 HOH HOH A . F 6 HOH 123 1123 1123 HOH HOH A . F 6 HOH 124 1124 1124 HOH HOH A . F 6 HOH 125 1125 1125 HOH HOH A . F 6 HOH 126 1126 1126 HOH HOH A . F 6 HOH 127 1127 1127 HOH HOH A . F 6 HOH 128 1128 1128 HOH HOH A . F 6 HOH 129 1129 1129 HOH HOH A . F 6 HOH 130 1130 1130 HOH HOH A . F 6 HOH 131 1131 1131 HOH HOH A . F 6 HOH 132 1132 1132 HOH HOH A . F 6 HOH 133 1133 1133 HOH HOH A . F 6 HOH 134 1134 1134 HOH HOH A . F 6 HOH 135 1135 1135 HOH HOH A . F 6 HOH 136 1136 1136 HOH HOH A . F 6 HOH 137 1137 1137 HOH HOH A . F 6 HOH 138 1138 1138 HOH HOH A . F 6 HOH 139 1139 1139 HOH HOH A . F 6 HOH 140 1140 1140 HOH HOH A . F 6 HOH 141 1141 1141 HOH HOH A . F 6 HOH 142 1142 1142 HOH HOH A . F 6 HOH 143 1143 1143 HOH HOH A . F 6 HOH 144 1144 1144 HOH HOH A . F 6 HOH 145 1145 1145 HOH HOH A . F 6 HOH 146 1146 1146 HOH HOH A . F 6 HOH 147 1147 1147 HOH HOH A . F 6 HOH 148 1148 1148 HOH HOH A . F 6 HOH 149 1149 1149 HOH HOH A . F 6 HOH 150 1150 1150 HOH HOH A . F 6 HOH 151 1151 1151 HOH HOH A . F 6 HOH 152 1152 1152 HOH HOH A . F 6 HOH 153 1153 1153 HOH HOH A . F 6 HOH 154 1154 1154 HOH HOH A . F 6 HOH 155 1155 1155 HOH HOH A . F 6 HOH 156 1156 1156 HOH HOH A . F 6 HOH 157 1157 1157 HOH HOH A . F 6 HOH 158 1159 1159 HOH HOH A . F 6 HOH 159 1160 1160 HOH HOH A . F 6 HOH 160 1161 1161 HOH HOH A . F 6 HOH 161 1162 1162 HOH HOH A . F 6 HOH 162 1163 1163 HOH HOH A . F 6 HOH 163 1164 1164 HOH HOH A . F 6 HOH 164 1165 1165 HOH HOH A . F 6 HOH 165 1166 1166 HOH HOH A . F 6 HOH 166 1167 1167 HOH HOH A . F 6 HOH 167 1168 1168 HOH HOH A . F 6 HOH 168 1169 1169 HOH HOH A . F 6 HOH 169 1170 1170 HOH HOH A . F 6 HOH 170 1171 1171 HOH HOH A . F 6 HOH 171 1172 1172 HOH HOH A . F 6 HOH 172 1173 1173 HOH HOH A . F 6 HOH 173 1174 1174 HOH HOH A . F 6 HOH 174 1175 1175 HOH HOH A . F 6 HOH 175 1176 1176 HOH HOH A . F 6 HOH 176 1177 1177 HOH HOH A . F 6 HOH 177 1178 1178 HOH HOH A . F 6 HOH 178 1179 1179 HOH HOH A . F 6 HOH 179 1180 1180 HOH HOH A . F 6 HOH 180 1181 1181 HOH HOH A . F 6 HOH 181 1182 1182 HOH HOH A . F 6 HOH 182 1183 1183 HOH HOH A . F 6 HOH 183 1184 1184 HOH HOH A . F 6 HOH 184 1185 1185 HOH HOH A . F 6 HOH 185 1186 1186 HOH HOH A . F 6 HOH 186 1187 1187 HOH HOH A . F 6 HOH 187 1188 1188 HOH HOH A . F 6 HOH 188 1189 1189 HOH HOH A . F 6 HOH 189 1190 1190 HOH HOH A . F 6 HOH 190 1191 1191 HOH HOH A . F 6 HOH 191 1192 1192 HOH HOH A . F 6 HOH 192 1193 1193 HOH HOH A . F 6 HOH 193 1194 1194 HOH HOH A . F 6 HOH 194 1195 1195 HOH HOH A . F 6 HOH 195 1196 1196 HOH HOH A . F 6 HOH 196 1197 1197 HOH HOH A . F 6 HOH 197 1198 1198 HOH HOH A . F 6 HOH 198 1199 1199 HOH HOH A . F 6 HOH 199 1200 1200 HOH HOH A . F 6 HOH 200 1201 1201 HOH HOH A . F 6 HOH 201 1202 1202 HOH HOH A . F 6 HOH 202 1203 1203 HOH HOH A . F 6 HOH 203 1204 1204 HOH HOH A . F 6 HOH 204 1205 1205 HOH HOH A . F 6 HOH 205 1206 1206 HOH HOH A . F 6 HOH 206 1207 1207 HOH HOH A . F 6 HOH 207 1208 1208 HOH HOH A . F 6 HOH 208 1209 1209 HOH HOH A . F 6 HOH 209 1210 1210 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 MAR345 'data collection' . ? 3 XDS 'data scaling' . ? 4 # _cell.entry_id 1EK0 _cell.length_a 62.326 _cell.length_b 62.326 _cell.length_c 91.221 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EK0 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # _exptl.entry_id 1EK0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2 _exptl_crystal.density_percent_sol 54.38 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;10% PEG-3350, 100 MM HEPES, PH 7.5, 20 MM NICL2 , VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-06-01 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.903 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength 0.903 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EK0 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.48 _reflns.number_obs 33345 _reflns.number_all 146199 _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs 0.0260000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.55 _reflns.B_iso_Wilson_estimate 34 _reflns.pdbx_redundancy 4.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.47 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 90.0 _reflns_shell.Rmerge_I_obs 0.2140000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.22 _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 5853 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EK0 _refine.ls_number_reflns_obs 33452 _refine.ls_number_reflns_all 33452 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 31.00 _refine.ls_d_res_high 1.48 _refine.ls_percent_reflns_obs 94.2 _refine.ls_R_factor_obs 0.1780000 _refine.ls_R_factor_all 0.1790000 _refine.ls_R_factor_R_work 0.1780000 _refine.ls_R_factor_R_free 0.2280000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1673 _refine.ls_number_parameters 660 _refine.ls_number_restraints 610 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 5P21 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1EK0 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 1 _refine_analyze.occupancy_sum_hydrogen 0. _refine_analyze.occupancy_sum_non_hydrogen 1609. _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1391 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 62 _refine_hist.number_atoms_solvent 209 _refine_hist.number_atoms_total 1662 _refine_hist.d_res_high 1.48 _refine_hist.d_res_low 31.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.01 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.04 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.00 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.04 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.06 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.01 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.00 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.06 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.00 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1EK0 _pdbx_refine.R_factor_all_no_cutoff 0.1790000 _pdbx_refine.R_factor_obs_no_cutoff 0.1780000 _pdbx_refine.free_R_factor_no_cutoff 0.2280000 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5. _pdbx_refine.free_R_val_test_set_ct_no_cutoff 166 _pdbx_refine.R_factor_all_4sig_cutoff 0.1720000 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1710000 _pdbx_refine.free_R_factor_4sig_cutoff 0.2210000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5. _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 152 _pdbx_refine.number_reflns_obs_4sig_cutoff 2865 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1EK0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EK0 _struct.title 'GPPNHP-BOUND YPT51 AT 1.48 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EK0 _struct_keywords.pdbx_keywords ENDOCYTOSIS/EXOCYTOSIS _struct_keywords.text 'G PROTEIN, VESICULAR TRAFFIC, GTP HYDROLYSIS, YPT/RAB PROTEIN, ENDOCYTOSIS, HYDROLASE, ENDOCYTOSIS-EXOCYTOSIS COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_ref.id 1 _struct_ref.db_code YPT51_YEAST _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P36017 _struct_ref.pdbx_align_begin 5 _struct_ref.pdbx_seq_one_letter_code ;VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAAL VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF LGIGEKIPLK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EK0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P36017 _struct_ref_seq.db_align_beg 5 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 174 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 174 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1EK0 MHO A 71 ? UNP P36017 MET 75 'modified residue' 75 1 1 1EK0 MHO A 120 ? UNP P36017 MET 124 'modified residue' 124 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 15 ? ASN A 26 ? GLY A 19 ASN A 30 1 ? 12 HELX_P HELX_P2 2 GLN A 62 ? ALA A 69 ? GLN A 66 ALA A 73 5 ? 8 HELX_P HELX_P3 3 LYS A 87 ? ALA A 105 ? LYS A 91 ALA A 109 1 ? 19 HELX_P HELX_P4 4 ALA A 130 ? GLY A 142 ? ALA A 134 GLY A 146 1 ? 13 HELX_P HELX_P5 5 ASN A 155 ? GLU A 165 ? ASN A 159 GLU A 169 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 70 C ? ? ? 1_555 A MHO 71 N ? ? A PRO 74 A MHO 75 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MHO 71 C ? ? ? 1_555 A TYR 72 N ? ? A MHO 75 A TYR 76 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A ASP 119 C ? ? ? 1_555 A MHO 120 N ? ? A ASP 123 A MHO 124 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? A MHO 120 C ? ? ? 1_555 A LEU 121 N ? ? A MHO 124 A LEU 125 1_555 ? ? ? ? ? ? ? 1.322 ? ? metalc1 metalc ? ? A SER 17 OG ? ? ? 1_555 B MG . MG ? ? A SER 21 A MG 601 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc2 metalc ? ? A THR 35 OG1 ? ? ? 1_555 B MG . MG ? ? A THR 39 A MG 601 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc3 metalc ? ? A HIS 50 NE2 ? ? ? 1_555 C NI . NI ? ? A HIS 54 A NI 602 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc4 metalc ? ? D GNP . O2B ? ? ? 1_555 B MG . MG ? ? A GNP 501 A MG 601 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc5 metalc ? ? D GNP . O1G ? ? ? 1_555 B MG . MG ? ? A GNP 501 A MG 601 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc6 metalc ? ? E GDP . N7 ? ? ? 1_555 C NI . NI ? ? A GDP 502 A NI 602 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 601 A HOH 1001 1_555 ? ? ? ? ? ? ? 2.155 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 601 A HOH 1002 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc9 metalc ? ? C NI . NI ? ? ? 1_555 F HOH . O ? ? A NI 602 A HOH 1016 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc10 metalc ? ? C NI . NI ? ? ? 1_555 F HOH . O ? ? A NI 602 A HOH 1154 1_555 ? ? ? ? ? ? ? 2.143 ? ? metalc11 metalc ? ? C NI . NI ? ? ? 1_555 F HOH . O ? ? A NI 602 A HOH 1155 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc12 metalc ? ? C NI . NI ? ? ? 1_555 F HOH . O ? ? A NI 602 A HOH 1156 1_555 ? ? ? ? ? ? ? 2.125 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 17 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 OG1 ? A THR 35 ? A THR 39 ? 1_555 83.6 ? 2 OG ? A SER 17 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O2B ? D GNP . ? A GNP 501 ? 1_555 92.4 ? 3 OG1 ? A THR 35 ? A THR 39 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O2B ? D GNP . ? A GNP 501 ? 1_555 175.1 ? 4 OG ? A SER 17 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O1G ? D GNP . ? A GNP 501 ? 1_555 171.8 ? 5 OG1 ? A THR 35 ? A THR 39 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O1G ? D GNP . ? A GNP 501 ? 1_555 88.2 ? 6 O2B ? D GNP . ? A GNP 501 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O1G ? D GNP . ? A GNP 501 ? 1_555 95.9 ? 7 OG ? A SER 17 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 89.3 ? 8 OG1 ? A THR 35 ? A THR 39 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 87.8 ? 9 O2B ? D GNP . ? A GNP 501 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 89.3 ? 10 O1G ? D GNP . ? A GNP 501 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 90.5 ? 11 OG ? A SER 17 ? A SER 21 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O ? F HOH . ? A HOH 1002 ? 1_555 87.9 ? 12 OG1 ? A THR 35 ? A THR 39 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O ? F HOH . ? A HOH 1002 ? 1_555 91.7 ? 13 O2B ? D GNP . ? A GNP 501 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O ? F HOH . ? A HOH 1002 ? 1_555 91.0 ? 14 O1G ? D GNP . ? A GNP 501 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O ? F HOH . ? A HOH 1002 ? 1_555 92.1 ? 15 O ? F HOH . ? A HOH 1001 ? 1_555 MG ? B MG . ? A MG 601 ? 1_555 O ? F HOH . ? A HOH 1002 ? 1_555 177.3 ? 16 NE2 ? A HIS 50 ? A HIS 54 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 N7 ? E GDP . ? A GDP 502 ? 1_555 91.1 ? 17 NE2 ? A HIS 50 ? A HIS 54 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1016 ? 1_555 87.5 ? 18 N7 ? E GDP . ? A GDP 502 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1016 ? 1_555 93.8 ? 19 NE2 ? A HIS 50 ? A HIS 54 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1154 ? 1_555 94.6 ? 20 N7 ? E GDP . ? A GDP 502 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1154 ? 1_555 89.6 ? 21 O ? F HOH . ? A HOH 1016 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1154 ? 1_555 175.9 ? 22 NE2 ? A HIS 50 ? A HIS 54 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1155 ? 1_555 89.1 ? 23 N7 ? E GDP . ? A GDP 502 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1155 ? 1_555 171.5 ? 24 O ? F HOH . ? A HOH 1016 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1155 ? 1_555 94.7 ? 25 O ? F HOH . ? A HOH 1154 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1155 ? 1_555 81.9 ? 26 NE2 ? A HIS 50 ? A HIS 54 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1156 ? 1_555 178.2 ? 27 N7 ? E GDP . ? A GDP 502 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1156 ? 1_555 89.4 ? 28 O ? F HOH . ? A HOH 1016 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1156 ? 1_555 94.2 ? 29 O ? F HOH . ? A HOH 1154 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1156 ? 1_555 83.7 ? 30 O ? F HOH . ? A HOH 1155 ? 1_555 NI ? C NI . ? A NI 602 ? 1_555 O ? F HOH . ? A HOH 1156 ? 1_555 90.2 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MHO A 71 ? . . . . MHO A 75 ? 1_555 . . . . . . . MET 1 MHO Oxidation 'Named protein modification' 2 MHO A 120 ? . . . . MHO A 124 ? 1_555 . . . . . . . MET 1 MHO Oxidation 'Named protein modification' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 38 ? ILE A 47 ? ALA A 42 ILE A 51 A 2 HIS A 50 ? THR A 59 ? HIS A 54 THR A 63 A 3 THR A 2 ? LEU A 9 ? THR A 6 LEU A 13 A 4 ALA A 78 ? ASP A 84 ? ALA A 82 ASP A 88 A 5 ILE A 110 ? ASN A 116 ? ILE A 114 ASN A 120 A 6 LEU A 144 ? GLU A 147 ? LEU A 148 GLU A 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 47 ? O ILE A 51 N HIS A 50 ? N HIS A 54 A 2 3 N LYS A 53 ? N LYS A 57 O THR A 2 ? O THR A 6 A 3 4 N VAL A 7 ? N VAL A 11 O ALA A 78 ? O ALA A 82 A 4 5 N ALA A 79 ? N ALA A 83 O ILE A 110 ? O ILE A 114 A 5 6 N LEU A 113 ? N LEU A 117 O LEU A 144 ? O LEU A 148 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 601 ? 5 'BINDING SITE FOR RESIDUE MG A 601' AC2 Software A NI 602 ? 6 'BINDING SITE FOR RESIDUE NI A 602' AC3 Software A GNP 501 ? 29 'BINDING SITE FOR RESIDUE GNP A 501' AC4 Software A GDP 502 ? 22 'BINDING SITE FOR RESIDUE GDP A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 17 ? SER A 21 . ? 1_555 ? 2 AC1 5 THR A 35 ? THR A 39 . ? 1_555 ? 3 AC1 5 GNP D . ? GNP A 501 . ? 1_555 ? 4 AC1 5 HOH F . ? HOH A 1001 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH A 1002 . ? 1_555 ? 6 AC2 6 HIS A 50 ? HIS A 54 . ? 1_555 ? 7 AC2 6 GDP E . ? GDP A 502 . ? 1_555 ? 8 AC2 6 HOH F . ? HOH A 1016 . ? 1_555 ? 9 AC2 6 HOH F . ? HOH A 1154 . ? 1_555 ? 10 AC2 6 HOH F . ? HOH A 1155 . ? 1_555 ? 11 AC2 6 HOH F . ? HOH A 1156 . ? 1_555 ? 12 AC3 29 ALA A 12 ? ALA A 16 . ? 1_555 ? 13 AC3 29 ALA A 13 ? ALA A 17 . ? 1_555 ? 14 AC3 29 VAL A 14 ? VAL A 18 . ? 1_555 ? 15 AC3 29 GLY A 15 ? GLY A 19 . ? 1_555 ? 16 AC3 29 LYS A 16 ? LYS A 20 . ? 1_555 ? 17 AC3 29 SER A 17 ? SER A 21 . ? 1_555 ? 18 AC3 29 SER A 18 ? SER A 22 . ? 1_555 ? 19 AC3 29 PHE A 28 ? PHE A 32 . ? 1_555 ? 20 AC3 29 ALA A 29 ? ALA A 33 . ? 1_555 ? 21 AC3 29 GLU A 30 ? GLU A 34 . ? 1_555 ? 22 AC3 29 PRO A 34 ? PRO A 38 . ? 1_555 ? 23 AC3 29 THR A 35 ? THR A 39 . ? 1_555 ? 24 AC3 29 GLY A 61 ? GLY A 65 . ? 1_555 ? 25 AC3 29 ASN A 116 ? ASN A 120 . ? 1_555 ? 26 AC3 29 LYS A 117 ? LYS A 121 . ? 1_555 ? 27 AC3 29 ASP A 119 ? ASP A 123 . ? 1_555 ? 28 AC3 29 MHO A 120 ? MHO A 124 . ? 1_555 ? 29 AC3 29 SER A 149 ? SER A 153 . ? 1_555 ? 30 AC3 29 ALA A 150 ? ALA A 154 . ? 1_555 ? 31 AC3 29 LYS A 151 ? LYS A 155 . ? 1_555 ? 32 AC3 29 MG B . ? MG A 601 . ? 1_555 ? 33 AC3 29 HOH F . ? HOH A 1001 . ? 1_555 ? 34 AC3 29 HOH F . ? HOH A 1002 . ? 1_555 ? 35 AC3 29 HOH F . ? HOH A 1019 . ? 1_555 ? 36 AC3 29 HOH F . ? HOH A 1044 . ? 1_555 ? 37 AC3 29 HOH F . ? HOH A 1070 . ? 1_555 ? 38 AC3 29 HOH F . ? HOH A 1091 . ? 1_555 ? 39 AC3 29 HOH F . ? HOH A 1096 . ? 1_555 ? 40 AC3 29 HOH F . ? HOH A 1112 . ? 1_555 ? 41 AC4 22 PHE A 40 ? PHE A 44 . ? 6_555 ? 42 AC4 22 THR A 42 ? THR A 46 . ? 6_555 ? 43 AC4 22 ARG A 44 ? ARG A 48 . ? 6_555 ? 44 AC4 22 ASN A 48 ? ASN A 52 . ? 1_555 ? 45 AC4 22 HIS A 50 ? HIS A 54 . ? 1_555 ? 46 AC4 22 LYS A 53 ? LYS A 57 . ? 6_555 ? 47 AC4 22 GLU A 126 ? GLU A 130 . ? 2_655 ? 48 AC4 22 ARG A 127 ? ARG A 131 . ? 2_655 ? 49 AC4 22 LYS A 128 ? LYS A 132 . ? 2_655 ? 50 AC4 22 GLU A 165 ? GLU A 169 . ? 1_555 ? 51 AC4 22 LEU A 169 ? LEU A 173 . ? 1_555 ? 52 AC4 22 NI C . ? NI A 602 . ? 1_555 ? 53 AC4 22 HOH F . ? HOH A 1003 . ? 1_555 ? 54 AC4 22 HOH F . ? HOH A 1013 . ? 1_555 ? 55 AC4 22 HOH F . ? HOH A 1016 . ? 1_555 ? 56 AC4 22 HOH F . ? HOH A 1023 . ? 1_555 ? 57 AC4 22 HOH F . ? HOH A 1032 . ? 6_555 ? 58 AC4 22 HOH F . ? HOH A 1039 . ? 6_555 ? 59 AC4 22 HOH F . ? HOH A 1108 . ? 6_555 ? 60 AC4 22 HOH F . ? HOH A 1140 . ? 2_655 ? 61 AC4 22 HOH F . ? HOH A 1154 . ? 1_555 ? 62 AC4 22 HOH F . ? HOH A 1156 . ? 1_555 ? # _pdbx_entry_details.entry_id 1EK0 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A TYR 77 ? ? CB A TYR 77 ? ? CG A TYR 77 ? ? 126.18 113.40 12.78 1.90 N 2 1 NE A ARG 78 ? ? CZ A ARG 78 ? ? NH1 A ARG 78 ? ? 124.18 120.30 3.88 0.50 N 3 1 NE A ARG 99 ? ? CZ A ARG 99 ? ? NH2 A ARG 99 ? ? 124.27 120.30 3.97 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 52 ? ? 55.51 -117.36 2 1 GLU A 127 ? ? -132.13 -130.65 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MHO 71 A MHO 75 ? MET S-OXYMETHIONINE 2 A MHO 120 A MHO 124 ? MET S-OXYMETHIONINE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GDP PB P N N 74 GDP O1B O N N 75 GDP O2B O N N 76 GDP O3B O N N 77 GDP O3A O N N 78 GDP PA P N N 79 GDP O1A O N N 80 GDP O2A O N N 81 GDP "O5'" O N N 82 GDP "C5'" C N N 83 GDP "C4'" C N R 84 GDP "O4'" O N N 85 GDP "C3'" C N S 86 GDP "O3'" O N N 87 GDP "C2'" C N R 88 GDP "O2'" O N N 89 GDP "C1'" C N R 90 GDP N9 N Y N 91 GDP C8 C Y N 92 GDP N7 N Y N 93 GDP C5 C Y N 94 GDP C6 C N N 95 GDP O6 O N N 96 GDP N1 N N N 97 GDP C2 C N N 98 GDP N2 N N N 99 GDP N3 N N N 100 GDP C4 C Y N 101 GDP HOB2 H N N 102 GDP HOB3 H N N 103 GDP HOA2 H N N 104 GDP "H5'" H N N 105 GDP "H5''" H N N 106 GDP "H4'" H N N 107 GDP "H3'" H N N 108 GDP "HO3'" H N N 109 GDP "H2'" H N N 110 GDP "HO2'" H N N 111 GDP "H1'" H N N 112 GDP H8 H N N 113 GDP HN1 H N N 114 GDP HN21 H N N 115 GDP HN22 H N N 116 GLN N N N N 117 GLN CA C N S 118 GLN C C N N 119 GLN O O N N 120 GLN CB C N N 121 GLN CG C N N 122 GLN CD C N N 123 GLN OE1 O N N 124 GLN NE2 N N N 125 GLN OXT O N N 126 GLN H H N N 127 GLN H2 H N N 128 GLN HA H N N 129 GLN HB2 H N N 130 GLN HB3 H N N 131 GLN HG2 H N N 132 GLN HG3 H N N 133 GLN HE21 H N N 134 GLN HE22 H N N 135 GLN HXT H N N 136 GLU N N N N 137 GLU CA C N S 138 GLU C C N N 139 GLU O O N N 140 GLU CB C N N 141 GLU CG C N N 142 GLU CD C N N 143 GLU OE1 O N N 144 GLU OE2 O N N 145 GLU OXT O N N 146 GLU H H N N 147 GLU H2 H N N 148 GLU HA H N N 149 GLU HB2 H N N 150 GLU HB3 H N N 151 GLU HG2 H N N 152 GLU HG3 H N N 153 GLU HE2 H N N 154 GLU HXT H N N 155 GLY N N N N 156 GLY CA C N N 157 GLY C C N N 158 GLY O O N N 159 GLY OXT O N N 160 GLY H H N N 161 GLY H2 H N N 162 GLY HA2 H N N 163 GLY HA3 H N N 164 GLY HXT H N N 165 GNP PG P N N 166 GNP O1G O N N 167 GNP O2G O N N 168 GNP O3G O N N 169 GNP N3B N N N 170 GNP PB P N R 171 GNP O1B O N N 172 GNP O2B O N N 173 GNP O3A O N N 174 GNP PA P N S 175 GNP O1A O N N 176 GNP O2A O N N 177 GNP "O5'" O N N 178 GNP "C5'" C N N 179 GNP "C4'" C N R 180 GNP "O4'" O N N 181 GNP "C3'" C N S 182 GNP "O3'" O N N 183 GNP "C2'" C N R 184 GNP "O2'" O N N 185 GNP "C1'" C N R 186 GNP N9 N Y N 187 GNP C8 C Y N 188 GNP N7 N Y N 189 GNP C5 C Y N 190 GNP C6 C Y N 191 GNP O6 O N N 192 GNP N1 N Y N 193 GNP C2 C Y N 194 GNP N2 N N N 195 GNP N3 N Y N 196 GNP C4 C Y N 197 GNP HOG2 H N N 198 GNP HOG3 H N N 199 GNP HNB3 H N N 200 GNP HOB2 H N N 201 GNP HOA2 H N N 202 GNP "H5'2" H N N 203 GNP "H5'1" H N N 204 GNP "H4'" H N N 205 GNP "H3'" H N N 206 GNP "HO3'" H N N 207 GNP "H2'" H N N 208 GNP "HO2'" H N N 209 GNP "H1'" H N N 210 GNP H8 H N N 211 GNP HN1 H N N 212 GNP HN21 H N N 213 GNP HN22 H N N 214 HIS N N N N 215 HIS CA C N S 216 HIS C C N N 217 HIS O O N N 218 HIS CB C N N 219 HIS CG C Y N 220 HIS ND1 N Y N 221 HIS CD2 C Y N 222 HIS CE1 C Y N 223 HIS NE2 N Y N 224 HIS OXT O N N 225 HIS H H N N 226 HIS H2 H N N 227 HIS HA H N N 228 HIS HB2 H N N 229 HIS HB3 H N N 230 HIS HD1 H N N 231 HIS HD2 H N N 232 HIS HE1 H N N 233 HIS HE2 H N N 234 HIS HXT H N N 235 HOH O O N N 236 HOH H1 H N N 237 HOH H2 H N N 238 ILE N N N N 239 ILE CA C N S 240 ILE C C N N 241 ILE O O N N 242 ILE CB C N S 243 ILE CG1 C N N 244 ILE CG2 C N N 245 ILE CD1 C N N 246 ILE OXT O N N 247 ILE H H N N 248 ILE H2 H N N 249 ILE HA H N N 250 ILE HB H N N 251 ILE HG12 H N N 252 ILE HG13 H N N 253 ILE HG21 H N N 254 ILE HG22 H N N 255 ILE HG23 H N N 256 ILE HD11 H N N 257 ILE HD12 H N N 258 ILE HD13 H N N 259 ILE HXT H N N 260 LEU N N N N 261 LEU CA C N S 262 LEU C C N N 263 LEU O O N N 264 LEU CB C N N 265 LEU CG C N N 266 LEU CD1 C N N 267 LEU CD2 C N N 268 LEU OXT O N N 269 LEU H H N N 270 LEU H2 H N N 271 LEU HA H N N 272 LEU HB2 H N N 273 LEU HB3 H N N 274 LEU HG H N N 275 LEU HD11 H N N 276 LEU HD12 H N N 277 LEU HD13 H N N 278 LEU HD21 H N N 279 LEU HD22 H N N 280 LEU HD23 H N N 281 LEU HXT H N N 282 LYS N N N N 283 LYS CA C N S 284 LYS C C N N 285 LYS O O N N 286 LYS CB C N N 287 LYS CG C N N 288 LYS CD C N N 289 LYS CE C N N 290 LYS NZ N N N 291 LYS OXT O N N 292 LYS H H N N 293 LYS H2 H N N 294 LYS HA H N N 295 LYS HB2 H N N 296 LYS HB3 H N N 297 LYS HG2 H N N 298 LYS HG3 H N N 299 LYS HD2 H N N 300 LYS HD3 H N N 301 LYS HE2 H N N 302 LYS HE3 H N N 303 LYS HZ1 H N N 304 LYS HZ2 H N N 305 LYS HZ3 H N N 306 LYS HXT H N N 307 MET N N N N 308 MET CA C N S 309 MET C C N N 310 MET O O N N 311 MET CB C N N 312 MET CG C N N 313 MET SD S N N 314 MET CE C N N 315 MET OXT O N N 316 MET H H N N 317 MET H2 H N N 318 MET HA H N N 319 MET HB2 H N N 320 MET HB3 H N N 321 MET HG2 H N N 322 MET HG3 H N N 323 MET HE1 H N N 324 MET HE2 H N N 325 MET HE3 H N N 326 MET HXT H N N 327 MG MG MG N N 328 MHO N N N N 329 MHO CA C N S 330 MHO CB C N N 331 MHO CG C N N 332 MHO SD S N S 333 MHO CE C N N 334 MHO C C N N 335 MHO O O N N 336 MHO OXT O N N 337 MHO OD1 O N N 338 MHO H H N N 339 MHO H2 H N N 340 MHO HA H N N 341 MHO HB2 H N N 342 MHO HB3 H N N 343 MHO HG2 H N N 344 MHO HG3 H N N 345 MHO HE1 H N N 346 MHO HE2 H N N 347 MHO HE3 H N N 348 MHO HXT H N N 349 NI NI NI N N 350 PHE N N N N 351 PHE CA C N S 352 PHE C C N N 353 PHE O O N N 354 PHE CB C N N 355 PHE CG C Y N 356 PHE CD1 C Y N 357 PHE CD2 C Y N 358 PHE CE1 C Y N 359 PHE CE2 C Y N 360 PHE CZ C Y N 361 PHE OXT O N N 362 PHE H H N N 363 PHE H2 H N N 364 PHE HA H N N 365 PHE HB2 H N N 366 PHE HB3 H N N 367 PHE HD1 H N N 368 PHE HD2 H N N 369 PHE HE1 H N N 370 PHE HE2 H N N 371 PHE HZ H N N 372 PHE HXT H N N 373 PRO N N N N 374 PRO CA C N S 375 PRO C C N N 376 PRO O O N N 377 PRO CB C N N 378 PRO CG C N N 379 PRO CD C N N 380 PRO OXT O N N 381 PRO H H N N 382 PRO HA H N N 383 PRO HB2 H N N 384 PRO HB3 H N N 385 PRO HG2 H N N 386 PRO HG3 H N N 387 PRO HD2 H N N 388 PRO HD3 H N N 389 PRO HXT H N N 390 SER N N N N 391 SER CA C N S 392 SER C C N N 393 SER O O N N 394 SER CB C N N 395 SER OG O N N 396 SER OXT O N N 397 SER H H N N 398 SER H2 H N N 399 SER HA H N N 400 SER HB2 H N N 401 SER HB3 H N N 402 SER HG H N N 403 SER HXT H N N 404 THR N N N N 405 THR CA C N S 406 THR C C N N 407 THR O O N N 408 THR CB C N R 409 THR OG1 O N N 410 THR CG2 C N N 411 THR OXT O N N 412 THR H H N N 413 THR H2 H N N 414 THR HA H N N 415 THR HB H N N 416 THR HG1 H N N 417 THR HG21 H N N 418 THR HG22 H N N 419 THR HG23 H N N 420 THR HXT H N N 421 TRP N N N N 422 TRP CA C N S 423 TRP C C N N 424 TRP O O N N 425 TRP CB C N N 426 TRP CG C Y N 427 TRP CD1 C Y N 428 TRP CD2 C Y N 429 TRP NE1 N Y N 430 TRP CE2 C Y N 431 TRP CE3 C Y N 432 TRP CZ2 C Y N 433 TRP CZ3 C Y N 434 TRP CH2 C Y N 435 TRP OXT O N N 436 TRP H H N N 437 TRP H2 H N N 438 TRP HA H N N 439 TRP HB2 H N N 440 TRP HB3 H N N 441 TRP HD1 H N N 442 TRP HE1 H N N 443 TRP HE3 H N N 444 TRP HZ2 H N N 445 TRP HZ3 H N N 446 TRP HH2 H N N 447 TRP HXT H N N 448 TYR N N N N 449 TYR CA C N S 450 TYR C C N N 451 TYR O O N N 452 TYR CB C N N 453 TYR CG C Y N 454 TYR CD1 C Y N 455 TYR CD2 C Y N 456 TYR CE1 C Y N 457 TYR CE2 C Y N 458 TYR CZ C Y N 459 TYR OH O N N 460 TYR OXT O N N 461 TYR H H N N 462 TYR H2 H N N 463 TYR HA H N N 464 TYR HB2 H N N 465 TYR HB3 H N N 466 TYR HD1 H N N 467 TYR HD2 H N N 468 TYR HE1 H N N 469 TYR HE2 H N N 470 TYR HH H N N 471 TYR HXT H N N 472 VAL N N N N 473 VAL CA C N S 474 VAL C C N N 475 VAL O O N N 476 VAL CB C N N 477 VAL CG1 C N N 478 VAL CG2 C N N 479 VAL OXT O N N 480 VAL H H N N 481 VAL H2 H N N 482 VAL HA H N N 483 VAL HB H N N 484 VAL HG11 H N N 485 VAL HG12 H N N 486 VAL HG13 H N N 487 VAL HG21 H N N 488 VAL HG22 H N N 489 VAL HG23 H N N 490 VAL HXT H N N 491 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GDP PB O1B doub N N 70 GDP PB O2B sing N N 71 GDP PB O3B sing N N 72 GDP PB O3A sing N N 73 GDP O2B HOB2 sing N N 74 GDP O3B HOB3 sing N N 75 GDP O3A PA sing N N 76 GDP PA O1A doub N N 77 GDP PA O2A sing N N 78 GDP PA "O5'" sing N N 79 GDP O2A HOA2 sing N N 80 GDP "O5'" "C5'" sing N N 81 GDP "C5'" "C4'" sing N N 82 GDP "C5'" "H5'" sing N N 83 GDP "C5'" "H5''" sing N N 84 GDP "C4'" "O4'" sing N N 85 GDP "C4'" "C3'" sing N N 86 GDP "C4'" "H4'" sing N N 87 GDP "O4'" "C1'" sing N N 88 GDP "C3'" "O3'" sing N N 89 GDP "C3'" "C2'" sing N N 90 GDP "C3'" "H3'" sing N N 91 GDP "O3'" "HO3'" sing N N 92 GDP "C2'" "O2'" sing N N 93 GDP "C2'" "C1'" sing N N 94 GDP "C2'" "H2'" sing N N 95 GDP "O2'" "HO2'" sing N N 96 GDP "C1'" N9 sing N N 97 GDP "C1'" "H1'" sing N N 98 GDP N9 C8 sing Y N 99 GDP N9 C4 sing Y N 100 GDP C8 N7 doub Y N 101 GDP C8 H8 sing N N 102 GDP N7 C5 sing Y N 103 GDP C5 C6 sing N N 104 GDP C5 C4 doub Y N 105 GDP C6 O6 doub N N 106 GDP C6 N1 sing N N 107 GDP N1 C2 sing N N 108 GDP N1 HN1 sing N N 109 GDP C2 N2 sing N N 110 GDP C2 N3 doub N N 111 GDP N2 HN21 sing N N 112 GDP N2 HN22 sing N N 113 GDP N3 C4 sing N N 114 GLN N CA sing N N 115 GLN N H sing N N 116 GLN N H2 sing N N 117 GLN CA C sing N N 118 GLN CA CB sing N N 119 GLN CA HA sing N N 120 GLN C O doub N N 121 GLN C OXT sing N N 122 GLN CB CG sing N N 123 GLN CB HB2 sing N N 124 GLN CB HB3 sing N N 125 GLN CG CD sing N N 126 GLN CG HG2 sing N N 127 GLN CG HG3 sing N N 128 GLN CD OE1 doub N N 129 GLN CD NE2 sing N N 130 GLN NE2 HE21 sing N N 131 GLN NE2 HE22 sing N N 132 GLN OXT HXT sing N N 133 GLU N CA sing N N 134 GLU N H sing N N 135 GLU N H2 sing N N 136 GLU CA C sing N N 137 GLU CA CB sing N N 138 GLU CA HA sing N N 139 GLU C O doub N N 140 GLU C OXT sing N N 141 GLU CB CG sing N N 142 GLU CB HB2 sing N N 143 GLU CB HB3 sing N N 144 GLU CG CD sing N N 145 GLU CG HG2 sing N N 146 GLU CG HG3 sing N N 147 GLU CD OE1 doub N N 148 GLU CD OE2 sing N N 149 GLU OE2 HE2 sing N N 150 GLU OXT HXT sing N N 151 GLY N CA sing N N 152 GLY N H sing N N 153 GLY N H2 sing N N 154 GLY CA C sing N N 155 GLY CA HA2 sing N N 156 GLY CA HA3 sing N N 157 GLY C O doub N N 158 GLY C OXT sing N N 159 GLY OXT HXT sing N N 160 GNP PG O1G doub N N 161 GNP PG O2G sing N N 162 GNP PG O3G sing N N 163 GNP PG N3B sing N N 164 GNP O2G HOG2 sing N N 165 GNP O3G HOG3 sing N N 166 GNP N3B PB sing N N 167 GNP N3B HNB3 sing N N 168 GNP PB O1B doub N N 169 GNP PB O2B sing N N 170 GNP PB O3A sing N N 171 GNP O2B HOB2 sing N N 172 GNP O3A PA sing N N 173 GNP PA O1A doub N N 174 GNP PA O2A sing N N 175 GNP PA "O5'" sing N N 176 GNP O2A HOA2 sing N N 177 GNP "O5'" "C5'" sing N N 178 GNP "C5'" "C4'" sing N N 179 GNP "C5'" "H5'2" sing N N 180 GNP "C5'" "H5'1" sing N N 181 GNP "C4'" "O4'" sing N N 182 GNP "C4'" "C3'" sing N N 183 GNP "C4'" "H4'" sing N N 184 GNP "O4'" "C1'" sing N N 185 GNP "C3'" "O3'" sing N N 186 GNP "C3'" "C2'" sing N N 187 GNP "C3'" "H3'" sing N N 188 GNP "O3'" "HO3'" sing N N 189 GNP "C2'" "O2'" sing N N 190 GNP "C2'" "C1'" sing N N 191 GNP "C2'" "H2'" sing N N 192 GNP "O2'" "HO2'" sing N N 193 GNP "C1'" N9 sing N N 194 GNP "C1'" "H1'" sing N N 195 GNP N9 C8 sing Y N 196 GNP N9 C4 sing Y N 197 GNP C8 N7 doub Y N 198 GNP C8 H8 sing N N 199 GNP N7 C5 sing Y N 200 GNP C5 C6 sing Y N 201 GNP C5 C4 doub Y N 202 GNP C6 O6 doub N N 203 GNP C6 N1 sing Y N 204 GNP N1 C2 sing Y N 205 GNP N1 HN1 sing N N 206 GNP C2 N2 sing N N 207 GNP C2 N3 doub Y N 208 GNP N2 HN21 sing N N 209 GNP N2 HN22 sing N N 210 GNP N3 C4 sing Y N 211 HIS N CA sing N N 212 HIS N H sing N N 213 HIS N H2 sing N N 214 HIS CA C sing N N 215 HIS CA CB sing N N 216 HIS CA HA sing N N 217 HIS C O doub N N 218 HIS C OXT sing N N 219 HIS CB CG sing N N 220 HIS CB HB2 sing N N 221 HIS CB HB3 sing N N 222 HIS CG ND1 sing Y N 223 HIS CG CD2 doub Y N 224 HIS ND1 CE1 doub Y N 225 HIS ND1 HD1 sing N N 226 HIS CD2 NE2 sing Y N 227 HIS CD2 HD2 sing N N 228 HIS CE1 NE2 sing Y N 229 HIS CE1 HE1 sing N N 230 HIS NE2 HE2 sing N N 231 HIS OXT HXT sing N N 232 HOH O H1 sing N N 233 HOH O H2 sing N N 234 ILE N CA sing N N 235 ILE N H sing N N 236 ILE N H2 sing N N 237 ILE CA C sing N N 238 ILE CA CB sing N N 239 ILE CA HA sing N N 240 ILE C O doub N N 241 ILE C OXT sing N N 242 ILE CB CG1 sing N N 243 ILE CB CG2 sing N N 244 ILE CB HB sing N N 245 ILE CG1 CD1 sing N N 246 ILE CG1 HG12 sing N N 247 ILE CG1 HG13 sing N N 248 ILE CG2 HG21 sing N N 249 ILE CG2 HG22 sing N N 250 ILE CG2 HG23 sing N N 251 ILE CD1 HD11 sing N N 252 ILE CD1 HD12 sing N N 253 ILE CD1 HD13 sing N N 254 ILE OXT HXT sing N N 255 LEU N CA sing N N 256 LEU N H sing N N 257 LEU N H2 sing N N 258 LEU CA C sing N N 259 LEU CA CB sing N N 260 LEU CA HA sing N N 261 LEU C O doub N N 262 LEU C OXT sing N N 263 LEU CB CG sing N N 264 LEU CB HB2 sing N N 265 LEU CB HB3 sing N N 266 LEU CG CD1 sing N N 267 LEU CG CD2 sing N N 268 LEU CG HG sing N N 269 LEU CD1 HD11 sing N N 270 LEU CD1 HD12 sing N N 271 LEU CD1 HD13 sing N N 272 LEU CD2 HD21 sing N N 273 LEU CD2 HD22 sing N N 274 LEU CD2 HD23 sing N N 275 LEU OXT HXT sing N N 276 LYS N CA sing N N 277 LYS N H sing N N 278 LYS N H2 sing N N 279 LYS CA C sing N N 280 LYS CA CB sing N N 281 LYS CA HA sing N N 282 LYS C O doub N N 283 LYS C OXT sing N N 284 LYS CB CG sing N N 285 LYS CB HB2 sing N N 286 LYS CB HB3 sing N N 287 LYS CG CD sing N N 288 LYS CG HG2 sing N N 289 LYS CG HG3 sing N N 290 LYS CD CE sing N N 291 LYS CD HD2 sing N N 292 LYS CD HD3 sing N N 293 LYS CE NZ sing N N 294 LYS CE HE2 sing N N 295 LYS CE HE3 sing N N 296 LYS NZ HZ1 sing N N 297 LYS NZ HZ2 sing N N 298 LYS NZ HZ3 sing N N 299 LYS OXT HXT sing N N 300 MET N CA sing N N 301 MET N H sing N N 302 MET N H2 sing N N 303 MET CA C sing N N 304 MET CA CB sing N N 305 MET CA HA sing N N 306 MET C O doub N N 307 MET C OXT sing N N 308 MET CB CG sing N N 309 MET CB HB2 sing N N 310 MET CB HB3 sing N N 311 MET CG SD sing N N 312 MET CG HG2 sing N N 313 MET CG HG3 sing N N 314 MET SD CE sing N N 315 MET CE HE1 sing N N 316 MET CE HE2 sing N N 317 MET CE HE3 sing N N 318 MET OXT HXT sing N N 319 MHO N CA sing N N 320 MHO N H sing N N 321 MHO N H2 sing N N 322 MHO CA CB sing N N 323 MHO CA C sing N N 324 MHO CA HA sing N N 325 MHO CB CG sing N N 326 MHO CB HB2 sing N N 327 MHO CB HB3 sing N N 328 MHO CG SD sing N N 329 MHO CG HG2 sing N N 330 MHO CG HG3 sing N N 331 MHO SD CE sing N N 332 MHO SD OD1 doub N N 333 MHO CE HE1 sing N N 334 MHO CE HE2 sing N N 335 MHO CE HE3 sing N N 336 MHO C O doub N N 337 MHO C OXT sing N N 338 MHO OXT HXT sing N N 339 PHE N CA sing N N 340 PHE N H sing N N 341 PHE N H2 sing N N 342 PHE CA C sing N N 343 PHE CA CB sing N N 344 PHE CA HA sing N N 345 PHE C O doub N N 346 PHE C OXT sing N N 347 PHE CB CG sing N N 348 PHE CB HB2 sing N N 349 PHE CB HB3 sing N N 350 PHE CG CD1 doub Y N 351 PHE CG CD2 sing Y N 352 PHE CD1 CE1 sing Y N 353 PHE CD1 HD1 sing N N 354 PHE CD2 CE2 doub Y N 355 PHE CD2 HD2 sing N N 356 PHE CE1 CZ doub Y N 357 PHE CE1 HE1 sing N N 358 PHE CE2 CZ sing Y N 359 PHE CE2 HE2 sing N N 360 PHE CZ HZ sing N N 361 PHE OXT HXT sing N N 362 PRO N CA sing N N 363 PRO N CD sing N N 364 PRO N H sing N N 365 PRO CA C sing N N 366 PRO CA CB sing N N 367 PRO CA HA sing N N 368 PRO C O doub N N 369 PRO C OXT sing N N 370 PRO CB CG sing N N 371 PRO CB HB2 sing N N 372 PRO CB HB3 sing N N 373 PRO CG CD sing N N 374 PRO CG HG2 sing N N 375 PRO CG HG3 sing N N 376 PRO CD HD2 sing N N 377 PRO CD HD3 sing N N 378 PRO OXT HXT sing N N 379 SER N CA sing N N 380 SER N H sing N N 381 SER N H2 sing N N 382 SER CA C sing N N 383 SER CA CB sing N N 384 SER CA HA sing N N 385 SER C O doub N N 386 SER C OXT sing N N 387 SER CB OG sing N N 388 SER CB HB2 sing N N 389 SER CB HB3 sing N N 390 SER OG HG sing N N 391 SER OXT HXT sing N N 392 THR N CA sing N N 393 THR N H sing N N 394 THR N H2 sing N N 395 THR CA C sing N N 396 THR CA CB sing N N 397 THR CA HA sing N N 398 THR C O doub N N 399 THR C OXT sing N N 400 THR CB OG1 sing N N 401 THR CB CG2 sing N N 402 THR CB HB sing N N 403 THR OG1 HG1 sing N N 404 THR CG2 HG21 sing N N 405 THR CG2 HG22 sing N N 406 THR CG2 HG23 sing N N 407 THR OXT HXT sing N N 408 TRP N CA sing N N 409 TRP N H sing N N 410 TRP N H2 sing N N 411 TRP CA C sing N N 412 TRP CA CB sing N N 413 TRP CA HA sing N N 414 TRP C O doub N N 415 TRP C OXT sing N N 416 TRP CB CG sing N N 417 TRP CB HB2 sing N N 418 TRP CB HB3 sing N N 419 TRP CG CD1 doub Y N 420 TRP CG CD2 sing Y N 421 TRP CD1 NE1 sing Y N 422 TRP CD1 HD1 sing N N 423 TRP CD2 CE2 doub Y N 424 TRP CD2 CE3 sing Y N 425 TRP NE1 CE2 sing Y N 426 TRP NE1 HE1 sing N N 427 TRP CE2 CZ2 sing Y N 428 TRP CE3 CZ3 doub Y N 429 TRP CE3 HE3 sing N N 430 TRP CZ2 CH2 doub Y N 431 TRP CZ2 HZ2 sing N N 432 TRP CZ3 CH2 sing Y N 433 TRP CZ3 HZ3 sing N N 434 TRP CH2 HH2 sing N N 435 TRP OXT HXT sing N N 436 TYR N CA sing N N 437 TYR N H sing N N 438 TYR N H2 sing N N 439 TYR CA C sing N N 440 TYR CA CB sing N N 441 TYR CA HA sing N N 442 TYR C O doub N N 443 TYR C OXT sing N N 444 TYR CB CG sing N N 445 TYR CB HB2 sing N N 446 TYR CB HB3 sing N N 447 TYR CG CD1 doub Y N 448 TYR CG CD2 sing Y N 449 TYR CD1 CE1 sing Y N 450 TYR CD1 HD1 sing N N 451 TYR CD2 CE2 doub Y N 452 TYR CD2 HD2 sing N N 453 TYR CE1 CZ doub Y N 454 TYR CE1 HE1 sing N N 455 TYR CE2 CZ sing Y N 456 TYR CE2 HE2 sing N N 457 TYR CZ OH sing N N 458 TYR OH HH sing N N 459 TYR OXT HXT sing N N 460 VAL N CA sing N N 461 VAL N H sing N N 462 VAL N H2 sing N N 463 VAL CA C sing N N 464 VAL CA CB sing N N 465 VAL CA HA sing N N 466 VAL C O doub N N 467 VAL C OXT sing N N 468 VAL CB CG1 sing N N 469 VAL CB CG2 sing N N 470 VAL CB HB sing N N 471 VAL CG1 HG11 sing N N 472 VAL CG1 HG12 sing N N 473 VAL CG1 HG13 sing N N 474 VAL CG2 HG21 sing N N 475 VAL CG2 HG22 sing N N 476 VAL CG2 HG23 sing N N 477 VAL OXT HXT sing N N 478 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5P21 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 1EK0 _atom_sites.fract_transf_matrix[1][1] 0.0160450 _atom_sites.fract_transf_matrix[1][2] 0.0092630 _atom_sites.fract_transf_matrix[1][3] 0.0000000 _atom_sites.fract_transf_matrix[2][1] 0.0000000 _atom_sites.fract_transf_matrix[2][2] 0.0185270 _atom_sites.fract_transf_matrix[2][3] 0.0000000 _atom_sites.fract_transf_matrix[3][1] 0.0000000 _atom_sites.fract_transf_matrix[3][2] 0.0000000 _atom_sites.fract_transf_matrix[3][3] 0.0109620 _atom_sites.fract_transf_vector[1] 0.0000000 _atom_sites.fract_transf_vector[2] 0.0000000 _atom_sites.fract_transf_vector[3] 0.0000000 # loop_ _atom_type.symbol C MG N NI O P S # loop_