data_1ETR # _entry.id 1ETR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ETR WWPDB D_1000173168 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1ETS . unspecified PDB 1ETT . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ETR _pdbx_database_status.recvd_initial_deposition_date 1992-07-06 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bode, W.' 1 'Brandstetter, H.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Refined 2.3 A X-ray crystal structure of bovine thrombin complexes formed with the benzamidine and arginine-based thrombin inhibitors NAPAP, 4-TAPAP and MQPA. A starting point for improving antithrombotics. ; J.Mol.Biol. 226 1085 1099 1992 JMOBAK UK 0022-2836 0070 ? 1518046 '10.1016/0022-2836(92)91054-S' 1 ;Crystallographic Determination of Thrombin Complexes with Small Synthetic Inhibitors as a Starting Point for the Receptor-Based Design of Antithrombotics ; 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 2 ;X-Ray Crystal Structure of Thrombin in Complex with D-Phe-Pro-Arg and with Small Benzamidine and Arginine-Based "Non-Peptidic" Inhibitors ; 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 3 ;The Refined 1.9-Angstroms X-Ray Crystal Structure of D-Phe-Pro-Arg Chloromethylketone-Inhibited Human Alpha-Thrombin: Structure Analysis, Overall Structure, Electrostatic Properties, Detailed Active-Site Geometry, and Structure-Function Relationships ; 'Protein Sci.' 1 426 ? 1992 PRCIEI US 0961-8368 0795 ? ? ? 4 ;Geometry of Binding of the Nalpha-Tosylated Piperidides of M-Amidino-, P-Amidino-and P-Guanidino Phenylalanine to Thrombin and Trypsin: X-Ray Crystal Structures of Their Trypsin Complexes and Modeling of Their Thrombin Complexes ; 'FEBS Lett.' 287 133 ? 1991 FEBLAL NE 0014-5793 0165 ? ? ? 5 ;Geometry of Binding of the Benzamidine-and Arginine-Based Inhibitors N-Alpha-(2-Naphthyl-Sulphonyl-Glycyl)-Dl-P-Amidinophenylalanyl-Piperidine (Napap) and (2R,4R)-4-Methyl-1-[N-Alpha-(3-Methyl-1,2,3,4-Tetrahydro-8-Quinolinesulphonyl)-L-Arginyl]-2-Piperidine Carboxylic Acid (Mqpa) to Human Alpha-Thrombin: X-Ray Crystallographic Determination of the Napap-Trypsin Complex and Modeling of Napap-Thrombin and Mqpa-Thrombin ; Eur.J.Biochem. 193 175 ? 1990 EJBCAI IX 0014-2956 0262 ? ? ? 6 ;The Refined 1.9 Angstroms Crystal Structure of Human Alpha-Thrombin: Interaction with D-Phe-Pro-Arg Chloromethylketone and Significance of the Tyr-Pro-Pro-Trp Insertion Segment ; 'Embo J.' 8 3467 ? 1989 EMJODG UK 0261-4189 0897 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Brandstetter, H.' 1 primary 'Turk, D.' 2 primary 'Hoeffken, H.W.' 3 primary 'Grosse, D.' 4 primary 'Sturzebecher, J.' 5 primary 'Martin, P.D.' 6 primary 'Edwards, B.F.' 7 primary 'Bode, W.' 8 1 'Bode, W.' 9 1 'Brandstetter, H.' 10 1 'Turk, D.' 11 1 'Bauer, M.' 12 1 'Stuerzebecher, J.' 13 2 'Bode, W.' 14 3 'Bode, W.' 15 3 'Turk, D.' 16 3 'Karshikov, A.' 17 4 'Turk, D.' 18 4 'Stuerzebecher, J.' 19 4 'Bode, W.' 20 5 'Bode, W.' 21 5 'Turk, D.' 22 5 'Stuerzebecher, J.' 23 6 'Bode, W.' 24 6 'Mayr, I.' 25 6 'Baumann, U.' 26 6 'Huber, R.' 27 6 'Stone, S.R.' 28 6 'Hofsteenge, J.' 29 # _cell.entry_id 1ETR _cell.length_a 87.710 _cell.length_b 87.710 _cell.length_c 102.980 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1ETR _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man EPSILON-THROMBIN 5735.240 1 3.4.21.5 ? ? ? 2 polymer man EPSILON-THROMBIN 29772.422 1 3.4.21.5 ? ? ? 3 non-polymer syn ;amino{[(4S)-5-[(2R,4R)-2-carboxy-4-methylpiperidin-1-yl]-4-({[(3R)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}amino)-5-oxopentyl]amino}methaniminium ; 509.642 1 ? ? ? ? 4 water nat water 18.015 152 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR TSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR L ? 2 'polypeptide(L)' no no ;IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISM LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVL QVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDRLGS ; ;IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISM LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVL QVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDRLGS ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 SER n 1 3 GLU n 1 4 ASP n 1 5 HIS n 1 6 PHE n 1 7 GLN n 1 8 PRO n 1 9 PHE n 1 10 PHE n 1 11 ASN n 1 12 GLU n 1 13 LYS n 1 14 THR n 1 15 PHE n 1 16 GLY n 1 17 ALA n 1 18 GLY n 1 19 GLU n 1 20 ALA n 1 21 ASP n 1 22 CYS n 1 23 GLY n 1 24 LEU n 1 25 ARG n 1 26 PRO n 1 27 LEU n 1 28 PHE n 1 29 GLU n 1 30 LYS n 1 31 LYS n 1 32 GLN n 1 33 VAL n 1 34 GLN n 1 35 ASP n 1 36 GLN n 1 37 THR n 1 38 GLU n 1 39 LYS n 1 40 GLU n 1 41 LEU n 1 42 PHE n 1 43 GLU n 1 44 SER n 1 45 TYR n 1 46 ILE n 1 47 GLU n 1 48 GLY n 1 49 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 GLN n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 VAL n 2 10 GLY n 2 11 LEU n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 VAL n 2 57 ASP n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 LYS n 2 75 VAL n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 ASP n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 LYS n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 LEU n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 ARG n 2 108 PRO n 2 109 ILE n 2 110 GLU n 2 111 LEU n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 LYS n 2 124 GLN n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 LYS n 2 129 LEU n 2 130 LEU n 2 131 HIS n 2 132 ALA n 2 133 GLY n 2 134 PHE n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 ARG n 2 145 ARG n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 THR n 2 151 SER n 2 152 VAL n 2 153 ALA n 2 154 GLU n 2 155 VAL n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 LEU n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ALA n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 GLY n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 TYR n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 ARG n 2 257 LEU n 2 258 GLY n 2 259 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? cow ? ? ? ? ? ? ? ? 'Bos taurus' 9913 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? cow ? ? ? ? ? ? ? ? 'Bos taurus' 9913 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP THRB_BOVIN 1 P00735 1 ;MARVRGPRLPGCLALAALFSLVHSQHVFLAHQQASSLLQRARRANKGFLEEVRKGNLERECLEEPCSREEAFEALESLSA TDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSVTRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRN PDGSITGPWCYTTSPTLRREECSVPVCGQDRVTVEVIPRSGGSTTSQSPLLETCVPDRGREYRGRLAVTTSGSRCLAWSS EQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSE DHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGRIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLIS DRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDY IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGE GKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS ; ? 2 UNP THRB_BOVIN 2 P00735 1 ;MARVRGPRLPGCLALAALFSLVHSQHVFLAHQQASSLLQRARRANKGFLEEVRKGNLERECLEEPCSREEAFEALESLSA TDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSVTRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRN PDGSITGPWCYTTSPTLRREECSVPVCGQDRVTVEVIPRSGGSTTSQSPLLETCVPDRGREYRGRLAVTTSGSRCLAWSS EQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSE DHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGRIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLIS DRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDY IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGE GKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ETR L 1 ? 49 ? P00735 318 ? 366 ? -12 15 2 2 1ETR H 1 ? 259 ? P00735 367 ? 625 ? 16 247 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MIT peptide-like . ;amino{[(4S)-5-[(2R,4R)-2-carboxy-4-methylpiperidin-1-yl]-4-({[(3R)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}amino)-5-oxopentyl]amino}methaniminium ; 'R-argatroban; MQPA, MD-805; MITSUBISHI INHIBITOR' 'C23 H37 N6 O5 S 1' 509.642 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ETR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_percent_sol 55.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1ETR _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.175 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.175 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THERE IS A CLEAVAGE IN THE CHAIN AT THR 149A - SER 149B IN THE INSERTION LOOP OF THROMBIN. THE AUTHORS DO NOT SEE THIS CLEAVAGE DUE TO DISORDER AT BOTH FLANKING REGIONS. NOTE THAT THE OCCUPANCY OF RESIDUES 148 - 149E IS GIVEN AS 0.0 INDICATING THAT THEY WERE NOT SEEN IN THE ELECTRON DENSITY MAPS. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2384 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 2571 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.256 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1ETR _struct.title ;REFINED 2.3 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF BOVINE THROMBIN COMPLEXES FORMED WITH THE BENZAMIDINE AND ARGININE-BASED THROMBIN INHIBITORS NAPAP, 4-TAPAP AND MQPA: A STARTING POINT FOR IMPROVING ANTITHROMBOTICS ; _struct.pdbx_descriptor 'EPSILON-THROMBIN (E.C.3.4.21.5) NON-COVALENT COMPLEX WITH MQPA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ETR _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE inhibitor' _struct_keywords.text 'SERINE PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 38 C SER A 44 I GLU L 14 SER L 14 1 3.6/13 7 HELX_P HELX_P2 2 ALA B 41 ? LEU B 45 ? ALA H 55 LEU H 59 5 ? 5 HELX_P HELX_P3 3 TYR B 47 A ASP B 51 E TYR H 60 ASP H 60 5 ? 5 HELX_P HELX_P4 4 ASP B 122 ? LEU B 129 C ASP H 125 LEU H 129 1 3.6/13 8 HELX_P HELX_P5 5 GLU B 169 ? LYS B 174 ? GLU H 164 LYS H 169 1 3.6/13 6 HELX_P HELX_P6 6 CYS B 173 ? THR B 177 ? CYS H 168 THR H 172 5 ? 5 HELX_P HELX_P7 7 VAL B 243 ? LYS B 247 ? VAL H 231 LYS H 235 5 ? 5 HELX_P HELX_P8 8 LEU B 246 ? ASP B 255 ? LEU H 234 ASP H 243 1 3.6/13 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.018 ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.008 ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.050 ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 1.997 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.57 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 7 ? S2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S1 2 3 ? anti-parallel S1 3 4 ? anti-parallel S1 4 5 ? anti-parallel S1 5 6 ? anti-parallel S1 6 7 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? anti-parallel S2 3 4 ? anti-parallel S2 4 5 ? anti-parallel S2 5 6 ? anti-parallel S2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 LYS B 77 ? ASN B 91 ? LYS H 81 ASN H 95 S1 2 ASP B 97 ? LYS B 106 ? ASP H 100 LYS H 109 S1 3 VAL B 38 ? THR B 40 ? VAL H 52 THR H 54 S1 4 GLU B 25 ? LEU B 32 ? GLU H 39 LEU H 46 S1 5 TRP B 14 ? ARG B 20 ? TRP H 29 ARG H 35 S1 6 VAL B 61 ? ILE B 63 ? VAL H 66 ILE H 68 S1 7 LYS B 77 ? ASN B 91 ? LYS H 81 ASN H 95 S2 1 VAL B 155 ? LEU B 167 ? VAL H 150 LEU H 162 S2 2 PHE B 134 ? ARG B 144 ? PHE H 134 ARG H 144 S2 3 PHE B 209 ? SER B 213 ? PHE H 199 SER H 203 S2 4 ARG B 218 ? TRP B 227 ? ARG H 206 TRP H 215 S2 5 GLY B 238 ? THR B 241 ? GLY H 226 THR H 229 S2 6 PHE B 186 ? ALA B 188 ? PHE H 181 ALA H 183 S2 7 VAL B 155 ? LEU B 167 ? VAL H 150 LEU H 162 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE MIT H 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 HIS B 43 ? HIS H 57 . ? 1_555 ? 2 AC1 13 TYR B 47 A TYR H 60 . ? 1_555 ? 3 AC1 13 LEU B 96 ? LEU H 99 . ? 1_555 ? 4 AC1 13 ASP B 199 ? ASP H 189 . ? 1_555 ? 5 AC1 13 ALA B 200 ? ALA H 190 . ? 1_555 ? 6 AC1 13 CYS B 201 ? CYS H 191 . ? 1_555 ? 7 AC1 13 SER B 205 ? SER H 195 . ? 1_555 ? 8 AC1 13 TRP B 227 ? TRP H 215 . ? 1_555 ? 9 AC1 13 GLY B 228 ? GLY H 216 . ? 1_555 ? 10 AC1 13 GLY B 230 ? GLY H 219 . ? 1_555 ? 11 AC1 13 HOH E . ? HOH H 561 . ? 1_555 ? 12 AC1 13 HOH E . ? HOH H 616 . ? 1_555 ? 13 AC1 13 HOH E . ? HOH H 632 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ETR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ETR _atom_sites.fract_transf_matrix[1][1] 0.011401 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011401 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009711 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'RESIDUE PRO H 37 IS A CIS PROLINE.' # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 -12 ? ? ? L . n A 1 2 SER 2 -11 ? ? ? L . n A 1 3 GLU 3 -10 ? ? ? L . n A 1 4 ASP 4 -9 ? ? ? L . n A 1 5 HIS 5 -8 ? ? ? L . n A 1 6 PHE 6 -7 ? ? ? L . n A 1 7 GLN 7 -6 ? ? ? L . n A 1 8 PRO 8 -5 ? ? ? L . n A 1 9 PHE 9 -4 ? ? ? L . n A 1 10 PHE 10 -3 ? ? ? L . n A 1 11 ASN 11 -2 ? ? ? L . n A 1 12 GLU 12 -1 ? ? ? L . n A 1 13 LYS 13 0 ? ? ? L . n A 1 14 THR 14 1 1 THR THR L H n A 1 15 PHE 15 1 1 PHE PHE L G n A 1 16 GLY 16 1 1 GLY GLY L F n A 1 17 ALA 17 1 1 ALA ALA L E n A 1 18 GLY 18 1 1 GLY GLY L D n A 1 19 GLU 19 1 1 GLU GLU L C n A 1 20 ALA 20 1 1 ALA ALA L B n A 1 21 ASP 21 1 1 ASP ASP L A n A 1 22 CYS 22 1 1 CYS CYS L . n A 1 23 GLY 23 2 2 GLY GLY L . n A 1 24 LEU 24 3 3 LEU LEU L . n A 1 25 ARG 25 4 4 ARG ARG L . n A 1 26 PRO 26 5 5 PRO PRO L . n A 1 27 LEU 27 6 6 LEU LEU L . n A 1 28 PHE 28 7 7 PHE PHE L . n A 1 29 GLU 29 8 8 GLU GLU L . n A 1 30 LYS 30 9 9 LYS LYS L . n A 1 31 LYS 31 10 10 LYS LYS L . n A 1 32 GLN 32 11 11 GLN GLN L . n A 1 33 VAL 33 12 12 VAL VAL L . n A 1 34 GLN 34 13 13 GLN GLN L . n A 1 35 ASP 35 14 14 ASP ASP L . n A 1 36 GLN 36 14 14 GLN GLN L A n A 1 37 THR 37 14 14 THR THR L B n A 1 38 GLU 38 14 14 GLU GLU L C n A 1 39 LYS 39 14 14 LYS LYS L D n A 1 40 GLU 40 14 14 GLU GLU L E n A 1 41 LEU 41 14 14 LEU LEU L F n A 1 42 PHE 42 14 14 PHE PHE L G n A 1 43 GLU 43 14 14 GLU GLU L H n A 1 44 SER 44 14 14 SER SER L I n A 1 45 TYR 45 14 14 TYR TYR L J n A 1 46 ILE 46 14 14 ILE ILE L K n A 1 47 GLU 47 14 14 GLU GLU L L n A 1 48 GLY 48 14 14 GLY GLY L M n A 1 49 ARG 49 15 15 ARG ARG L . n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 GLN 5 20 20 GLN GLN H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 VAL 9 24 24 VAL VAL H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 LEU 11 26 26 LEU LEU H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 VAL 56 61 61 VAL VAL H . n B 2 57 ASP 57 62 62 ASP ASP H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 LYS 74 78 78 LYS LYS H . n B 2 75 VAL 75 79 79 VAL VAL H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 ASP 82 86 86 ASP ASP H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 LYS 93 97 97 LYS LYS H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 LEU 103 106 106 LEU LEU H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 ARG 107 110 110 ARG ARG H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 ILE 109 112 112 ILE ILE H . n B 2 110 GLU 110 113 113 GLU GLU H . n B 2 111 LEU 111 114 114 LEU LEU H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 LYS 123 126 126 LYS LYS H . n B 2 124 GLN 124 127 127 GLN GLN H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 LYS 128 129 129 LYS LYS H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 HIS 131 131 131 HIS HIS H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 PHE 134 134 134 PHE PHE H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 ARG 144 144 144 ARG ARG H . n B 2 145 ARG 145 145 145 ARG ARG H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 148 148 TRP TRP H . n B 2 149 THR 149 149 149 THR THR H . n B 2 150 THR 150 149 149 THR THR H A n B 2 151 SER 151 149 149 SER SER H B n B 2 152 VAL 152 149 149 VAL VAL H C n B 2 153 ALA 153 149 149 ALA ALA H D n B 2 154 GLU 154 149 149 GLU GLU H E n B 2 155 VAL 155 150 150 VAL VAL H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 LEU 167 162 162 LEU LEU H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ALA 175 170 170 ALA ALA H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 GLY 193 186 186 GLY GLY H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 TYR 215 204 204 TYR TYR H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H A n B 2 233 ARG 233 221 221 ARG ARG H . n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 ARG 256 244 244 ARG ARG H . n B 2 257 LEU 257 245 245 LEU LEU H . n B 2 258 GLY 258 246 246 GLY GLY H . n B 2 259 SER 259 247 247 SER SER H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MIT 1 1 1 MIT 34T H . D 4 HOH 1 503 503 HOH HOH L . D 4 HOH 2 504 504 HOH HOH L . D 4 HOH 3 507 507 HOH HOH L . D 4 HOH 4 513 513 HOH HOH L . D 4 HOH 5 516 516 HOH HOH L . D 4 HOH 6 520 520 HOH HOH L . D 4 HOH 7 522 522 HOH HOH L . D 4 HOH 8 542 542 HOH HOH L . D 4 HOH 9 543 543 HOH HOH L . D 4 HOH 10 544 544 HOH HOH L . D 4 HOH 11 577 577 HOH HOH L . D 4 HOH 12 587 587 HOH HOH L . D 4 HOH 13 590 590 HOH HOH L . D 4 HOH 14 591 591 HOH HOH L . D 4 HOH 15 596 596 HOH HOH L . D 4 HOH 16 597 597 HOH HOH L . D 4 HOH 17 636 636 HOH HOH L . E 4 HOH 1 500 500 HOH HOH H . E 4 HOH 2 501 501 HOH HOH H . E 4 HOH 3 502 502 HOH HOH H . E 4 HOH 4 505 505 HOH HOH H . E 4 HOH 5 506 506 HOH HOH H . E 4 HOH 6 508 508 HOH HOH H . E 4 HOH 7 509 509 HOH HOH H . E 4 HOH 8 510 510 HOH HOH H . E 4 HOH 9 511 511 HOH HOH H . E 4 HOH 10 512 512 HOH HOH H . E 4 HOH 11 514 514 HOH HOH H . E 4 HOH 12 515 515 HOH HOH H . E 4 HOH 13 517 517 HOH HOH H . E 4 HOH 14 518 518 HOH HOH H . E 4 HOH 15 519 519 HOH HOH H . E 4 HOH 16 521 521 HOH HOH H . E 4 HOH 17 523 523 HOH HOH H . E 4 HOH 18 524 524 HOH HOH H . E 4 HOH 19 525 525 HOH HOH H . E 4 HOH 20 526 526 HOH HOH H . E 4 HOH 21 527 527 HOH HOH H . E 4 HOH 22 528 528 HOH HOH H . E 4 HOH 23 529 529 HOH HOH H . E 4 HOH 24 530 530 HOH HOH H . E 4 HOH 25 531 531 HOH HOH H . E 4 HOH 26 532 532 HOH HOH H . E 4 HOH 27 533 533 HOH HOH H . E 4 HOH 28 534 534 HOH HOH H . E 4 HOH 29 535 535 HOH HOH H . E 4 HOH 30 537 537 HOH HOH H . E 4 HOH 31 538 538 HOH HOH H . E 4 HOH 32 539 539 HOH HOH H . E 4 HOH 33 540 540 HOH HOH H . E 4 HOH 34 541 541 HOH HOH H . E 4 HOH 35 545 545 HOH HOH H . E 4 HOH 36 546 546 HOH HOH H . E 4 HOH 37 547 547 HOH HOH H . E 4 HOH 38 548 548 HOH HOH H . E 4 HOH 39 549 549 HOH HOH H . E 4 HOH 40 550 550 HOH HOH H . E 4 HOH 41 551 551 HOH HOH H . E 4 HOH 42 552 552 HOH HOH H . E 4 HOH 43 553 553 HOH HOH H . E 4 HOH 44 554 554 HOH HOH H . E 4 HOH 45 555 555 HOH HOH H . E 4 HOH 46 556 556 HOH HOH H . E 4 HOH 47 557 557 HOH HOH H . E 4 HOH 48 558 558 HOH HOH H . E 4 HOH 49 559 559 HOH HOH H . E 4 HOH 50 560 560 HOH HOH H . E 4 HOH 51 561 561 HOH HOH H . E 4 HOH 52 562 562 HOH HOH H . E 4 HOH 53 563 563 HOH HOH H . E 4 HOH 54 564 564 HOH HOH H . E 4 HOH 55 565 565 HOH HOH H . E 4 HOH 56 566 566 HOH HOH H . E 4 HOH 57 567 567 HOH HOH H . E 4 HOH 58 568 568 HOH HOH H . E 4 HOH 59 569 569 HOH HOH H . E 4 HOH 60 570 570 HOH HOH H . E 4 HOH 61 571 571 HOH HOH H . E 4 HOH 62 572 572 HOH HOH H . E 4 HOH 63 573 573 HOH HOH H . E 4 HOH 64 574 574 HOH HOH H . E 4 HOH 65 575 575 HOH HOH H . E 4 HOH 66 576 576 HOH HOH H . E 4 HOH 67 578 578 HOH HOH H . E 4 HOH 68 579 579 HOH HOH H . E 4 HOH 69 580 580 HOH HOH H . E 4 HOH 70 581 581 HOH HOH H . E 4 HOH 71 582 582 HOH HOH H . E 4 HOH 72 583 583 HOH HOH H . E 4 HOH 73 584 584 HOH HOH H . E 4 HOH 74 585 585 HOH HOH H . E 4 HOH 75 586 586 HOH HOH H . E 4 HOH 76 588 588 HOH HOH H . E 4 HOH 77 589 589 HOH HOH H . E 4 HOH 78 592 592 HOH HOH H . E 4 HOH 79 593 593 HOH HOH H . E 4 HOH 80 594 594 HOH HOH H . E 4 HOH 81 598 598 HOH HOH H . E 4 HOH 82 599 599 HOH HOH H . E 4 HOH 83 600 600 HOH HOH H . E 4 HOH 84 601 601 HOH HOH H . E 4 HOH 85 602 602 HOH HOH H . E 4 HOH 86 603 603 HOH HOH H . E 4 HOH 87 604 604 HOH HOH H . E 4 HOH 88 605 605 HOH HOH H . E 4 HOH 89 606 606 HOH HOH H . E 4 HOH 90 607 607 HOH HOH H . E 4 HOH 91 608 608 HOH HOH H . E 4 HOH 92 609 609 HOH HOH H . E 4 HOH 93 610 610 HOH HOH H . E 4 HOH 94 611 611 HOH HOH H . E 4 HOH 95 612 612 HOH HOH H . E 4 HOH 96 613 613 HOH HOH H . E 4 HOH 97 614 614 HOH HOH H . E 4 HOH 98 615 615 HOH HOH H . E 4 HOH 99 616 616 HOH HOH H . E 4 HOH 100 617 617 HOH HOH H . E 4 HOH 101 618 618 HOH HOH H . E 4 HOH 102 619 619 HOH HOH H . E 4 HOH 103 620 620 HOH HOH H . E 4 HOH 104 621 621 HOH HOH H . E 4 HOH 105 622 622 HOH HOH H . E 4 HOH 106 625 625 HOH HOH H . E 4 HOH 107 626 626 HOH HOH H . E 4 HOH 108 627 627 HOH HOH H . E 4 HOH 109 628 628 HOH HOH H . E 4 HOH 110 629 629 HOH HOH H . E 4 HOH 111 630 630 HOH HOH H . E 4 HOH 112 631 631 HOH HOH H . E 4 HOH 113 632 632 HOH HOH H . E 4 HOH 114 633 633 HOH HOH H . E 4 HOH 115 634 634 HOH HOH H . E 4 HOH 116 635 635 HOH HOH H . E 4 HOH 117 637 637 HOH HOH H . E 4 HOH 118 638 638 HOH HOH H . E 4 HOH 119 639 639 HOH HOH H . E 4 HOH 120 640 640 HOH HOH H . E 4 HOH 121 641 641 HOH HOH H . E 4 HOH 122 643 643 HOH HOH H . E 4 HOH 123 644 644 HOH HOH H . E 4 HOH 124 645 645 HOH HOH H . E 4 HOH 125 646 646 HOH HOH H . E 4 HOH 126 647 647 HOH HOH H . E 4 HOH 127 649 649 HOH HOH H . E 4 HOH 128 651 651 HOH HOH H . E 4 HOH 129 652 652 HOH HOH H . E 4 HOH 130 654 654 HOH HOH H . E 4 HOH 131 656 656 HOH HOH H . E 4 HOH 132 657 657 HOH HOH H . E 4 HOH 133 658 658 HOH HOH H . E 4 HOH 134 659 659 HOH HOH H . E 4 HOH 135 660 660 HOH HOH H . # _pdbx_molecule_features.prd_id PRD_000452 _pdbx_molecule_features.name Argatroban _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000452 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2740 ? 1 MORE -10 ? 1 'SSA (A^2)' 13520 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-12-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THE SHEETS PRESENTED AS *S1* AND *S2* ON SHEET RECORDS BELOW ARE ACTUALLY SIX-STRANDED BETA-BARRELS. THESE ARE REPRESENTED BY SEVEN-STRANDED SHEETS IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1ETR _pdbx_entry_details.nonpolymer_details ;THE ARGINYL SIDE-CHAIN OF INHIBITOR MQPA BINDS TO S1 SPECIFICITY POCKET, PIPERIDINE TO S2 AND QUINOLINE TO "ARYL BINDING SITE". ; _pdbx_entry_details.sequence_details ;THE NUMBERING OF THROMBIN RESIDUES IS BASED ON TOPOLOGICAL EQUIVALENCES WITH CHYMOTRYPSINOGEN. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 NE2 H HIS 131 ? ? CD2 H HIS 131 ? ? 1.305 1.373 -0.068 0.011 N 2 1 NE2 H HIS 230 ? ? CD2 H HIS 230 ? ? 1.298 1.373 -0.075 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD1 H TRP 29 ? ? CG H TRP 29 ? ? CD2 H TRP 29 ? ? 111.69 106.30 5.39 0.80 N 2 1 CE2 H TRP 29 ? ? CD2 H TRP 29 ? ? CG H TRP 29 ? ? 101.73 107.30 -5.57 0.80 N 3 1 CB H ARG 35 ? ? CG H ARG 35 ? ? CD H ARG 35 ? ? 95.66 111.60 -15.94 2.60 N 4 1 CD1 H TRP 51 ? ? CG H TRP 51 ? ? CD2 H TRP 51 ? ? 112.74 106.30 6.44 0.80 N 5 1 CE2 H TRP 51 ? ? CD2 H TRP 51 ? ? CG H TRP 51 ? ? 101.63 107.30 -5.67 0.80 N 6 1 CE2 H TRP 60 D ? CD2 H TRP 60 D ? CG H TRP 60 D ? 102.34 107.30 -4.96 0.80 N 7 1 CB H TYR 94 ? ? CG H TYR 94 ? ? CD2 H TYR 94 ? ? 116.41 121.00 -4.59 0.60 N 8 1 CB H TYR 94 ? ? CG H TYR 94 ? ? CD1 H TYR 94 ? ? 125.31 121.00 4.31 0.60 N 9 1 CE2 H TRP 96 ? ? CD2 H TRP 96 ? ? CG H TRP 96 ? ? 101.63 107.30 -5.67 0.80 N 10 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH1 H ARG 101 ? ? 123.82 120.30 3.52 0.50 N 11 1 CB H HIS 131 ? ? CG H HIS 131 ? ? CD2 H HIS 131 ? ? 119.74 129.70 -9.96 1.60 N 12 1 CD1 H TRP 141 ? ? CG H TRP 141 ? ? CD2 H TRP 141 ? ? 111.90 106.30 5.60 0.80 N 13 1 CE2 H TRP 141 ? ? CD2 H TRP 141 ? ? CG H TRP 141 ? ? 101.92 107.30 -5.38 0.80 N 14 1 NE H ARG 145 ? ? CZ H ARG 145 ? ? NH1 H ARG 145 ? ? 123.73 120.30 3.43 0.50 N 15 1 CD1 H TRP 148 ? ? CG H TRP 148 ? ? CD2 H TRP 148 ? ? 112.70 106.30 6.40 0.80 N 16 1 CE2 H TRP 148 ? ? CD2 H TRP 148 ? ? CG H TRP 148 ? ? 101.17 107.30 -6.13 0.80 N 17 1 CB H VAL 157 ? ? CA H VAL 157 ? ? C H VAL 157 ? ? 97.20 111.40 -14.20 1.90 N 18 1 CG1 H VAL 157 ? ? CB H VAL 157 ? ? CG2 H VAL 157 ? ? 122.32 110.90 11.42 1.60 N 19 1 CA H VAL 157 ? ? CB H VAL 157 ? ? CG1 H VAL 157 ? ? 101.57 110.90 -9.33 1.50 N 20 1 NE H ARG 165 ? ? CZ H ARG 165 ? ? NH2 H ARG 165 ? ? 115.10 120.30 -5.20 0.50 N 21 1 CD1 H TRP 207 ? ? CG H TRP 207 ? ? CD2 H TRP 207 ? ? 112.21 106.30 5.91 0.80 N 22 1 CE2 H TRP 207 ? ? CD2 H TRP 207 ? ? CG H TRP 207 ? ? 102.11 107.30 -5.19 0.80 N 23 1 CD1 H TRP 215 ? ? CG H TRP 215 ? ? CD2 H TRP 215 ? ? 111.57 106.30 5.27 0.80 N 24 1 CE2 H TRP 215 ? ? CD2 H TRP 215 ? ? CG H TRP 215 ? ? 102.01 107.30 -5.29 0.80 N 25 1 NE H ARG 221 ? ? CZ H ARG 221 ? ? NH1 H ARG 221 ? ? 125.36 120.30 5.06 0.50 N 26 1 CB H TYR 225 ? ? CG H TYR 225 ? ? CD2 H TYR 225 ? ? 115.13 121.00 -5.87 0.60 N 27 1 CB H TYR 228 ? ? CG H TYR 228 ? ? CD1 H TYR 228 ? ? 116.89 121.00 -4.11 0.60 N 28 1 CD1 H TRP 237 ? ? CG H TRP 237 ? ? CD2 H TRP 237 ? ? 112.76 106.30 6.46 0.80 N 29 1 CE2 H TRP 237 ? ? CD2 H TRP 237 ? ? CG H TRP 237 ? ? 101.67 107.30 -5.63 0.80 N 30 1 CA H LEU 245 ? ? CB H LEU 245 ? ? CG H LEU 245 ? ? 129.68 115.30 14.38 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA L 1 E ? 69.79 -46.49 2 1 ALA L 1 B ? 42.67 -74.14 3 1 PHE L 7 ? ? -122.35 -81.39 4 1 GLN L 11 ? ? 17.20 56.72 5 1 PRO H 28 ? ? -68.45 0.78 6 1 SER H 48 ? ? 171.79 174.89 7 1 ASP H 60 E ? 53.64 -2.95 8 1 ASN H 60 G ? -157.33 73.71 9 1 HIS H 71 ? ? -131.75 -45.99 10 1 TYR H 76 ? ? -52.82 108.65 11 1 TYR H 94 ? ? -36.32 120.77 12 1 LYS H 97 ? ? -101.80 47.99 13 1 GLU H 97 A ? 175.24 -86.87 14 1 TRP H 148 ? ? -103.04 -111.37 15 1 THR H 149 A ? -115.28 -140.68 16 1 ASP H 189 ? ? 178.41 154.46 17 1 CYS H 191 ? ? -148.38 -159.46 18 1 ASN H 205 ? ? 59.12 18.00 19 1 SER H 214 ? ? -104.68 -83.52 20 1 LYS H 240 ? ? -47.10 -71.20 21 1 ARG H 244 ? ? 82.19 -54.80 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ASP H 63 ? ? LEU H 64 ? ? -146.39 2 1 THR H 147 ? ? TRP H 148 ? ? 144.76 3 1 GLU H 149 E ? VAL H 150 ? ? -140.30 4 1 LEU H 245 ? ? GLY H 246 ? ? -124.54 5 1 GLY H 246 ? ? SER H 247 ? ? 140.05 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR H 204 A ? 0.069 'SIDE CHAIN' 2 1 TYR H 225 ? ? 0.118 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L THR -12 ? A THR 1 2 1 Y 1 L SER -11 ? A SER 2 3 1 Y 1 L GLU -10 ? A GLU 3 4 1 Y 1 L ASP -9 ? A ASP 4 5 1 Y 1 L HIS -8 ? A HIS 5 6 1 Y 1 L PHE -7 ? A PHE 6 7 1 Y 1 L GLN -6 ? A GLN 7 8 1 Y 1 L PRO -5 ? A PRO 8 9 1 Y 1 L PHE -4 ? A PHE 9 10 1 Y 1 L PHE -3 ? A PHE 10 11 1 Y 1 L ASN -2 ? A ASN 11 12 1 Y 1 L GLU -1 ? A GLU 12 13 1 Y 1 L LYS 0 ? A LYS 13 14 1 Y 0 L THR 1 H A THR 14 15 1 Y 0 L PHE 1 G A PHE 15 16 1 Y 0 L GLY 1 F A GLY 16 17 1 Y 0 L ALA 1 E A ALA 17 18 1 Y 0 L GLY 1 D A GLY 18 19 1 Y 0 L GLU 1 C A GLU 19 20 1 Y 0 L ALA 1 B A ALA 20 21 1 Y 0 L ASP 1 A A ASP 21 22 1 Y 0 L GLU 14 L A GLU 47 23 1 Y 0 L GLY 14 M A GLY 48 24 1 Y 0 L ARG 15 ? A ARG 49 25 1 Y 0 H TRP 148 ? B TRP 148 26 1 Y 0 H THR 149 ? B THR 149 27 1 Y 0 H THR 149 A B THR 150 28 1 Y 0 H SER 149 B B SER 151 29 1 Y 0 H VAL 149 C B VAL 152 30 1 Y 0 H ALA 149 D B ALA 153 31 1 Y 0 H GLU 149 E B GLU 154 32 1 Y 0 H LYS 236 ? B LYS 248 33 1 Y 0 H TRP 237 ? B TRP 249 34 1 Y 0 H ILE 238 ? B ILE 250 35 1 Y 0 H GLN 239 ? B GLN 251 36 1 Y 0 H LYS 240 ? B LYS 252 37 1 Y 0 H VAL 241 ? B VAL 253 38 1 Y 0 H ILE 242 ? B ILE 254 39 1 Y 0 H ASP 243 ? B ASP 255 40 1 Y 0 H ARG 244 ? B ARG 256 41 1 Y 0 H LEU 245 ? B LEU 257 42 1 Y 0 H GLY 246 ? B GLY 258 43 1 Y 0 H SER 247 ? B SER 259 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ;amino{[(4S)-5-[(2R,4R)-2-carboxy-4-methylpiperidin-1-yl]-4-({[(3R)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}amino)-5-oxopentyl]amino}methaniminium ; MIT 4 water HOH #