HEADER HYDROLASE 17-APR-00 1EUV TITLE X-RAY STRUCTURE OF THE C-TERMINAL ULP1 PROTEASE DOMAIN IN COMPLEX WITH TITLE 2 SMT3, THE YEAST ORTHOLOG OF SUMO. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ULP1 PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL PROTEASE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBITQUTIN-LIKE PROTEIN SMT3; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: SMT3 RESIDUES 13-98; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS SUMO HYDROLASE, UBIQUITIN-LIKE PROTEASE 1, SMT3 HYDROLASE KEYWDS 2 DESUMOYLATING ENZYME, CYSTEINE PROTEASE, SUMO PROCESSING ENZYME, KEYWDS 3 SMT3 PROCESSING ENZYME, NABH4, THIOHEMIACETAL, COVALENT PROTEASE KEYWDS 4 ADDUCT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MOSSESSOVA,C.D.LIMA REVDAT 3 21-DEC-22 1EUV 1 SEQADV LINK REVDAT 2 24-FEB-09 1EUV 1 VERSN REVDAT 1 07-JUN-00 1EUV 0 JRNL AUTH E.MOSSESSOVA,C.D.LIMA JRNL TITL ULP1-SUMO CRYSTAL STRUCTURE AND GENETIC ANALYSIS REVEAL JRNL TITL 2 CONSERVED INTERACTIONS AND A REGULATORY ELEMENT ESSENTIAL JRNL TITL 3 FOR CELL GROWTH IN YEAST. JRNL REF MOL.CELL V. 5 865 2000 JRNL REFN ISSN 1097-2765 JRNL PMID 10882122 JRNL DOI 10.1016/S1097-2765(00)80326-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.J.LI,M.HOCHSTRASSER REMARK 1 TITL A NEW PROTEASE REQUIRED FOR CELL-CYCLE PROGRESSION IN YEAST. REMARK 1 REF NATURE V. 398 246 1999 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/18457 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 47560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 5% OF THE OBSERVED DATA REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2378 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; NULL REMARK 3 ANGLE DISTANCE (A) : 1.600 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED A -LOGLIKELIHOOD RESIDUAL DERIVED REMARK 3 FROM RICE DISTRIBUTION FOR CENTRIC AND ACENTRIC CASES OF FS REMARK 3 SPARSE MATRIX PROCEDURE WITH ANISOTROPIC B-FACTOR REFINEMENT. REMARK 4 REMARK 4 1EUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-00. REMARK 100 THE DEPOSITION ID IS D_1000010911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : 100. REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH6.5, 10% W/V POLYETHYLENE REMARK 280 GLYCOL 20000, 3% W/V 1,6-HEXANDIOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 62.88700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.58350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.88700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.58350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER CONSTRUCTED FROM CHAIN REMARK 300 A. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 COVALENT ADDUCT FORMED BETWEEN THE PROTEOLYTIC REMARK 400 ACTIVE SITE THIOL AND THE C-TERMINAL GLYCINE OF REMARK 400 SMT3 USING THE REDUCING AGENT NABH4. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 13 REMARK 465 VAL B 14 REMARK 465 LYS B 15 REMARK 465 PRO B 16 REMARK 465 GLU B 17 REMARK 465 VAL B 18 REMARK 465 LYS B 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 20 CB CG CD REMARK 470 GLU B 21 CB CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 ASP B 75 CB CG OD1 OD2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 422 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 422 O HOH A 875 1.12 REMARK 500 CD ARG A 422 O HOH A 875 2.02 REMARK 500 NE ARG A 422 O HOH A 821 2.14 REMARK 500 CZ ARG A 422 O HOH A 875 2.17 REMARK 500 O HOH A 906 O HOH A 949 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 625 O HOH A 892 3548 1.28 REMARK 500 O HOH A 625 O HOH A 895 3548 1.62 REMARK 500 O HOH A 672 O HOH A 908 3558 1.68 REMARK 500 O HOH A 662 O HOH A 931 3558 2.07 REMARK 500 O HOH A 642 O HOH A 931 3558 2.18 REMARK 500 O HOH A 645 O HOH A 908 3558 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 422 CA ARG A 422 CB -0.340 REMARK 500 GLY B 98 C GLY B 98 O 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 412 CB - CG - OD1 ANGL. DEV. = 9.4 DEGREES REMARK 500 SER A 421 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 422 CB - CA - C ANGL. DEV. = 21.3 DEGREES REMARK 500 ARG A 422 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU A 423 CB - CG - CD ANGL. DEV. = 25.8 DEGREES REMARK 500 ARG A 446 CD - NE - CZ ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 446 NE - CZ - NH1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 446 NE - CZ - NH2 ANGL. DEV. = -11.3 DEGREES REMARK 500 ARG A 482 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 499 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 598 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 TYR A 601 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TYR A 601 CB - CG - CD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 606 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 608 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 93 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 423 151.65 112.62 REMARK 500 GLU B 21 -84.41 -87.00 REMARK 500 SER B 32 -37.68 -137.38 REMARK 500 ASP B 75 -22.93 101.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 1EUV A 401 621 UNP Q02724 ULP1_YEAST 401 621 DBREF 1EUV B 13 98 UNP Q12306 SMT3_YEAST 13 98 SEQADV 1EUV GLY A 401 UNP Q02724 LYS 401 CLONING ARTIFACT SEQADV 1EUV SER A 402 UNP Q02724 LYS 402 CLONING ARTIFACT SEQRES 1 A 221 GLY SER LEU VAL PRO GLU LEU ASN GLU LYS ASP ASP ASP SEQRES 2 A 221 GLN VAL GLN LYS ALA LEU ALA SER ARG GLU ASN THR GLN SEQRES 3 A 221 LEU MET ASN ARG ASP ASN ILE GLU ILE THR VAL ARG ASP SEQRES 4 A 221 PHE LYS THR LEU ALA PRO ARG ARG TRP LEU ASN ASP THR SEQRES 5 A 221 ILE ILE GLU PHE PHE MET LYS TYR ILE GLU LYS SER THR SEQRES 6 A 221 PRO ASN THR VAL ALA PHE ASN SER PHE PHE TYR THR ASN SEQRES 7 A 221 LEU SER GLU ARG GLY TYR GLN GLY VAL ARG ARG TRP MET SEQRES 8 A 221 LYS ARG LYS LYS THR GLN ILE ASP LYS LEU ASP LYS ILE SEQRES 9 A 221 PHE THR PRO ILE ASN LEU ASN GLN SER HIS TRP ALA LEU SEQRES 10 A 221 GLY ILE ILE ASP LEU LYS LYS LYS THR ILE GLY TYR VAL SEQRES 11 A 221 ASP SER LEU SER ASN GLY PRO ASN ALA MET SER PHE ALA SEQRES 12 A 221 ILE LEU THR ASP LEU GLN LYS TYR VAL MET GLU GLU SER SEQRES 13 A 221 LYS HIS THR ILE GLY GLU ASP PHE ASP LEU ILE HIS LEU SEQRES 14 A 221 ASP CYS PRO GLN GLN PRO ASN GLY TYR ASP CYS GLY ILE SEQRES 15 A 221 TYR VAL CYS MET ASN THR LEU TYR GLY SER ALA ASP ALA SEQRES 16 A 221 PRO LEU ASP PHE ASP TYR LYS ASP ALA ILE ARG MET ARG SEQRES 17 A 221 ARG PHE ILE ALA HIS LEU ILE LEU THR ASP ALA LEU LYS SEQRES 1 B 86 GLU VAL LYS PRO GLU VAL LYS PRO GLU THR HIS ILE ASN SEQRES 2 B 86 LEU LYS VAL SER ASP GLY SER SER GLU ILE PHE PHE LYS SEQRES 3 B 86 ILE LYS LYS THR THR PRO LEU ARG ARG LEU MET GLU ALA SEQRES 4 B 86 PHE ALA LYS ARG GLN GLY LYS GLU MET ASP SER LEU ARG SEQRES 5 B 86 PHE LEU TYR ASP GLY ILE ARG ILE GLN ALA ASP GLN THR SEQRES 6 B 86 PRO GLU ASP LEU ASP MET GLU ASP ASN ASP ILE ILE GLU SEQRES 7 B 86 ALA HIS ARG GLU GLN ILE GLY GLY FORMUL 3 HOH *432(H2 O) HELIX 1 1 ASN A 408 ALA A 420 1 13 HELIX 2 2 VAL A 437 LYS A 441 1 5 HELIX 3 3 THR A 442 ALA A 444 5 3 HELIX 4 4 ASN A 450 THR A 465 1 16 HELIX 5 5 SER A 473 GLY A 483 1 11 HELIX 6 6 TYR A 484 VAL A 487 5 4 HELIX 7 7 MET A 491 LYS A 495 5 5 HELIX 8 8 GLN A 497 LEU A 501 5 5 HELIX 9 9 ASN A 538 SER A 556 1 19 HELIX 10 10 ASP A 579 ALA A 593 1 15 HELIX 11 11 ASP A 600 THR A 617 1 18 HELIX 12 12 LEU B 45 GLN B 56 1 12 HELIX 13 13 GLU B 59 ASP B 61 5 3 SHEET 1 A 2 GLN A 426 ARG A 430 0 SHEET 2 A 2 ILE A 433 THR A 436 -1 O ILE A 433 N ARG A 430 SHEET 1 B 5 THR A 468 ALA A 470 0 SHEET 2 B 5 LYS A 503 LEU A 510 1 O LYS A 503 N VAL A 469 SHEET 3 B 5 HIS A 514 ASP A 521 -1 O HIS A 514 N LEU A 510 SHEET 4 B 5 THR A 526 VAL A 530 -1 O THR A 526 N ASP A 521 SHEET 5 B 5 ASP A 565 LEU A 569 1 O ASP A 565 N ILE A 527 SHEET 1 C 5 GLU B 34 LYS B 40 0 SHEET 2 C 5 HIS B 23 SER B 29 -1 N ILE B 24 O ILE B 39 SHEET 3 C 5 ASP B 87 ARG B 93 1 O ASP B 87 N LYS B 27 SHEET 4 C 5 LEU B 63 TYR B 67 -1 N ARG B 64 O HIS B 92 SHEET 5 C 5 ILE B 70 ARG B 71 -1 O ILE B 70 N TYR B 67 LINK SG CYS A 580 C GLY B 98 1555 1555 1.89 CRYST1 125.774 53.167 54.262 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018430 0.00000