data_1EVV # _entry.id 1EVV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EVV pdb_00001evv 10.2210/pdb1evv/pdb NDB TR0002 ? ? RCSB RCSB010940 ? ? WWPDB D_1000010940 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4TNA . unspecified PDB 1TRA . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EVV _pdbx_database_status.recvd_initial_deposition_date 2000-04-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jovine, L.' 1 'Djordjevic, S.' 2 'Rhodes, D.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals.' J.Mol.Biol. 301 401 414 2000 JMOBAK UK 0022-2836 0070 ? 10926517 10.1006/jmbi.2000.3950 1 'High-resolution X-ray diffraction studies on a pure species of transfer RNA' J.Mol.Biol. 72 99 101 1972 JMOBAK UK 0022-2836 0070 ? ? ? 2 'Structure of yeast phenylalanine tRNA at 3 A resolution' Nature 250 546 551 1974 NATUAS UK 0028-0836 0006 ? ? ? 3 'Structure of yeast phenylalanine transfer RNA at 2.5 A resolution' Proc.Natl.Acad.Sci.USA 72 4414 4418 1975 PNASA6 US 0027-8424 0040 ? ? ? 4 'Further refinement of the structure of yeast tRNA Phe' J.Mol.Biol. 124 523 534 1978 JMOBAK UK 0022-2836 0070 ? ? ? 5 ;Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles ; Biochemistry 25 4868 4878 1986 BICHAW US 0006-2960 0033 ? ? ? 6 'Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals' 'Acta Crystallogr.,Sect.A' 44 112 123 1988 ACACEQ DK 0108-7673 0621 ? ? 10.1107/S010876738700446X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jovine, L.' 1 ? primary 'Djordjevic, S.' 2 ? primary 'Rhodes, D.' 3 ? 1 'Ladner, J.E.' 4 ? 1 'Finch, J.T.' 5 ? 1 'Klug, A.' 6 ? 1 'Clark, B.F.' 7 ? 2 'Robertus, J.D.' 8 ? 2 'Ladner, J.E.' 9 ? 2 'Finch, J.T.' 10 ? 2 'Rhodes, D.' 11 ? 2 'Brown, R.S.' 12 ? 2 'Clark, B.F.C.' 13 ? 2 'Klug, A.' 14 ? 3 'Ladner, J.E.' 15 ? 3 'Jack, A.' 16 ? 3 'Robertus, J.D.' 17 ? 3 'Brown, R.S.' 18 ? 3 'Rhodes, D.' 19 ? 3 'Clark, B.F.' 20 ? 3 'Klug, A.' 21 ? 4 'Hingerty, B.' 22 ? 4 'Brown, R.S.' 23 ? 4 'Jack, A.' 24 ? 5 'Westhof, E.' 25 ? 5 'Sundaralingam, M.' 26 ? 6 'Westhof, E.' 27 ? 6 'Dumas, P.' 28 ? 6 'Moras, D.' 29 ? # _cell.entry_id 1EVV _cell.length_a 55.252 _cell.length_b 32.988 _cell.length_c 61.882 _cell.angle_alpha 90.00 _cell.angle_beta 90.38 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1EVV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PHENYLALANINE TRANSFER RNA' 24890.121 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 10 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 220 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCGGAUUUA(2MG)CUCAG(H2U)(H2U)GGGAGAGC(M2G)CCAGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)UGGAG (7MG)UC(5MC)UGUG(5MU)(PSU)CG(1MA)UCCACAGAAUUCGCACCA ; _entity_poly.pdbx_seq_one_letter_code_can GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 G n 1 5 A n 1 6 U n 1 7 U n 1 8 U n 1 9 A n 1 10 2MG n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 H2U n 1 17 H2U n 1 18 G n 1 19 G n 1 20 G n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 M2G n 1 27 C n 1 28 C n 1 29 A n 1 30 G n 1 31 A n 1 32 OMC n 1 33 U n 1 34 OMG n 1 35 A n 1 36 A n 1 37 YG n 1 38 A n 1 39 PSU n 1 40 5MC n 1 41 U n 1 42 G n 1 43 G n 1 44 A n 1 45 G n 1 46 7MG n 1 47 U n 1 48 C n 1 49 5MC n 1 50 U n 1 51 G n 1 52 U n 1 53 G n 1 54 5MU n 1 55 PSU n 1 56 C n 1 57 G n 1 58 1MA n 1 59 U n 1 60 C n 1 61 C n 1 62 A n 1 63 C n 1 64 A n 1 65 G n 1 66 A n 1 67 A n 1 68 U n 1 69 U n 1 70 C n 1 71 G n 1 72 C n 1 73 A n 1 74 C n 1 75 C n 1 76 A n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific Saccharomyces _entity_src_nat.pdbx_ncbi_taxonomy_id 4930 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code M10263 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 176479 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EVV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 176479 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MA 'RNA linking' n "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 2MG 'RNA linking' n "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 7MG 'RNA linking' n "7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H18 N5 O8 P' 379.263 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 HOH non-polymer . WATER ? 'H2 O' 18.015 M2G 'RNA linking' n "N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C12 H18 N5 O8 P' 391.274 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 YG 'RNA linking' n WYBUTOSINE 'Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4,9-DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL-9-OXO-METHYL ESTER' 'C21 H29 N6 O12 P' 588.462 # _exptl.entry_id 1EVV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_percent_sol 59.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method DIALYSIS _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;CRYSTALS GROWN AT 277 K IN 0.010 M TRIS-HCL PH 7.5, 0.012 M MGCL2, 0.002 M SPERMINE, 6% 1,6-HEXANEDIOL. CRYOPROTECTION CONDITIONS: AFTER WASHING IN FRESH CRYSTALLIZATION SOLUTION FOR 10 MIN AND ADDITION OF 30% MPD (V/V), CRYSTALS WERE FLASH-FROZEN IN LIQUID NITROGEN, DIALYSIS, temperature 277.15K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 TRIS-HCL ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 1,6-HEXANEDIOL ? ? ? 1 5 2 MGCL2 ? ? ? 1 6 2 1,6-HEXANEDIOL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 1999-04-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.932 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.932 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EVV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 25.80 _reflns.d_resolution_high 2.00 _reflns.number_obs 13678 _reflns.number_all 13678 _reflns.percent_possible_obs 88.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.036 _reflns.pdbx_netI_over_sigmaI 14.8 _reflns.B_iso_Wilson_estimate 29.3 _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.10 _reflns_shell.percent_possible_all 70.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.171 _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1EVV _refine.ls_number_reflns_obs 13678 _refine.ls_number_reflns_all 13678 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 810557.42 _refine.pdbx_data_cutoff_low_absF 0.00000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.79 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 88.5 _refine.ls_R_factor_obs 0.2270000 _refine.ls_R_factor_all 0.2270000 _refine.ls_R_factor_R_work 0.2270000 _refine.ls_R_factor_R_free 0.2630000 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.8 _refine.ls_number_reflns_R_free 926 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 53.6 _refine.aniso_B[1][1] 1.86 _refine.aniso_B[2][2] -0.56 _refine.aniso_B[3][3] -1.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 3.76 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.468 _refine.solvent_model_param_bsol 113.1 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;A LOW RESOLUTION LIMIT OF 6.O A WAS USED FOR INITIAL B FACTOR AND BULK SOLVENT CORRECTIONS. THE OCCUPANCY OF NUCLEOTIDE D16, AS WELL AS THOSE OF ATOMS P, O1P, O2P, O5* AND C5* OF NUCLEOTIDE D17, WERE REFINED TO ACCOUNT FOR MG2+-CATALYSED PARTIAL CLEAVAGE OF THE TRNA BACKBONE AT EITHER SIDE OF D16. DENSITY FOR THIS PART OF THE MOLECULE WAS POOR AND ITS PLACEMENT SHOULD THEREFORE BE CONSIDERED TENTATIVE. OCCUPANCIES OF ALL MG2+ IONS, THE SPERMINE AND ALL WATER MOLECULES WERE ALSO REFINED. ; _refine.pdbx_starting_model 'PDB ENTRY 1TRA' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1EVV _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.29 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.42 _refine_analyze.Luzzati_sigma_a_free 0.39 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1652 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 220 _refine_hist.number_atoms_total 1896 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 25.79 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 12.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.11 _refine_ls_shell.number_reflns_R_work 1432 _refine_ls_shell.R_factor_R_work 0.3240000 _refine_ls_shell.percent_reflns_obs 70.9 _refine_ls_shell.R_factor_R_free 0.3800000 _refine_ls_shell.R_factor_R_free_error 0.038 _refine_ls_shell.percent_reflns_R_free 6.6 _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 TRNA_RNA.PARAM TRNA_RNA.TOP 'X-RAY DIFFRACTION' 2 TRNA_ION.PARAM TRNA_ION.TOP 'X-RAY DIFFRACTION' 3 TRNA_LIGAND.PARAM TRNA_LIGAND.TOP 'X-RAY DIFFRACTION' 4 WATER_REP.PARA WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1EVV _struct.title 'CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EVV _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'TRANSFER RNA, PHENYLALANINE, PHE-TRNA, YEAST, AMINO-ACID TRANSPORT, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 9 "O3'" ? ? ? 1_555 A 2MG 10 P ? ? A A 9 A 2MG 10 1_555 ? ? ? ? ? ? ? 1.633 ? ? covale2 covale both ? A 2MG 10 "O3'" ? ? ? 1_555 A C 11 P ? ? A 2MG 10 A C 11 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale3 covale both ? A G 15 "O3'" ? ? ? 1_555 A H2U 16 P ? ? A G 15 A H2U 16 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? A H2U 16 "O3'" ? ? ? 1_555 A H2U 17 P ? ? A H2U 16 A H2U 17 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale5 covale both ? A H2U 17 "O3'" ? ? ? 1_555 A G 18 P ? ? A H2U 17 A G 18 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale6 covale both ? A C 25 "O3'" ? ? ? 1_555 A M2G 26 P ? ? A C 25 A M2G 26 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale7 covale both ? A M2G 26 "O3'" ? ? ? 1_555 A C 27 P ? ? A M2G 26 A C 27 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale8 covale both ? A A 31 "O3'" ? ? ? 1_555 A OMC 32 P ? ? A A 31 A OMC 32 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale9 covale both ? A OMC 32 "O3'" ? ? ? 1_555 A U 33 P ? ? A OMC 32 A U 33 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale10 covale both ? A U 33 "O3'" ? ? ? 1_555 A OMG 34 P ? ? A U 33 A OMG 34 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale11 covale both ? A OMG 34 "O3'" ? ? ? 1_555 A A 35 P ? ? A OMG 34 A A 35 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale12 covale both ? A A 36 "O3'" ? ? ? 1_555 A YG 37 P ? ? A A 36 A YG 37 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale13 covale both ? A YG 37 "O3'" ? ? ? 1_555 A A 38 P ? ? A YG 37 A A 38 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale14 covale both ? A A 38 "O3'" ? ? ? 1_555 A PSU 39 P ? ? A A 38 A PSU 39 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale15 covale both ? A PSU 39 "O3'" ? ? ? 1_555 A 5MC 40 P ? ? A PSU 39 A 5MC 40 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale16 covale both ? A 5MC 40 "O3'" ? ? ? 1_555 A U 41 P ? ? A 5MC 40 A U 41 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale17 covale both ? A G 45 "O3'" ? ? ? 1_555 A 7MG 46 P ? ? A G 45 A 7MG 46 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale18 covale both ? A 7MG 46 "O3'" ? ? ? 1_555 A U 47 P ? ? A 7MG 46 A U 47 1_555 ? ? ? ? ? ? ? 1.629 ? ? covale19 covale both ? A C 48 "O3'" ? ? ? 1_555 A 5MC 49 P ? ? A C 48 A 5MC 49 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale20 covale both ? A 5MC 49 "O3'" ? ? ? 1_555 A U 50 P ? ? A 5MC 49 A U 50 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale21 covale both ? A G 53 "O3'" ? ? ? 1_555 A 5MU 54 P ? ? A G 53 A 5MU 54 1_555 ? ? ? ? ? ? ? 1.639 ? ? covale22 covale both ? A 5MU 54 "O3'" ? ? ? 1_555 A PSU 55 P ? ? A 5MU 54 A PSU 55 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale23 covale both ? A PSU 55 "O3'" ? ? ? 1_555 A C 56 P ? ? A PSU 55 A C 56 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale24 covale both ? A G 57 "O3'" ? ? ? 1_555 A 1MA 58 P ? ? A G 57 A 1MA 58 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale25 covale both ? A 1MA 58 "O3'" ? ? ? 1_555 A U 59 P ? ? A 1MA 58 A U 59 1_555 ? ? ? ? ? ? ? 1.638 ? ? metalc1 metalc ? ? A C 11 OP1 ? ? ? 1_555 F MG . MG ? ? A C 11 A MG 905 1_555 ? ? ? ? ? ? ? 1.954 ? ? metalc2 metalc ? ? A C 11 OP2 ? ? ? 1_555 F MG . MG ? ? A C 11 A MG 905 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc3 metalc ? ? A G 19 OP1 ? ? ? 1_555 D MG . MG ? ? A G 19 A MG 903 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc4 metalc ? ? A G 20 OP1 ? ? ? 1_555 C MG . MG ? ? A G 20 A MG 902 1_555 ? ? ? ? ? ? ? 1.875 ? ? metalc5 metalc ? ? A A 21 OP2 ? ? ? 1_555 C MG . MG ? ? A A 21 A MG 902 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc6 metalc ? ? A G 30 OP1 ? ? ? 1_555 K MG . MG ? ? A G 30 A MG 910 1_555 ? ? ? ? ? ? ? 1.837 ? ? metalc7 metalc ? ? A A 36 OP1 ? ? ? 1_555 G MG . MG ? ? A A 36 A MG 906 1_555 ? ? ? ? ? ? ? 1.756 ? ? metalc8 metalc ? ? A G 43 OP2 ? ? ? 1_555 H MG . MG ? ? A G 43 A MG 907 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc9 metalc ? ? A U 52 OP1 ? ? ? 1_555 J MG . MG ? ? A U 52 A MG 909 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc10 metalc ? ? A G 71 "O3'" ? ? ? 1_555 I MG . MG ? ? A G 71 A MG 908 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc11 metalc ? ? A C 72 OP1 ? ? ? 1_555 I MG . MG ? ? A C 72 A MG 908 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc12 metalc ? ? A C 72 OP2 ? ? ? 1_555 I MG . MG ? ? A C 72 A MG 908 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc13 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 902 A HOH 1105 1_555 ? ? ? ? ? ? ? 1.925 ? ? metalc14 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 902 A HOH 1114 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 918 1_555 ? ? ? ? ? ? ? 1.839 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 919 1_555 ? ? ? ? ? ? ? 2.196 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 920 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 921 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc19 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 922 1_555 ? ? ? ? ? ? ? 1.917 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 936 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 937 1_555 ? ? ? ? ? ? ? 1.919 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 938 1_555 ? ? ? ? ? ? ? 1.761 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 939 1_555 ? ? ? ? ? ? ? 1.967 ? ? metalc24 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 940 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc25 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 941 1_555 ? ? ? ? ? ? ? 1.987 ? ? metalc26 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 907 A HOH 971 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc27 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 909 A HOH 1043 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc28 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 909 A HOH 1062 1_555 ? ? ? ? ? ? ? 2.095 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 69 O2 ? ? A G 4 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 69 N3 ? ? A G 4 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 68 N3 ? ? A A 5 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 68 O4 ? ? A A 5 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 6 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 6 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 66 N1 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 66 N6 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog19 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog21 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 23 N6 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog22 hydrog ? ? A 2MG 10 N1 ? ? ? 1_555 A C 25 N3 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A 2MG 10 N2 ? ? ? 1_555 A C 25 O2 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A 2MG 10 O6 ? ? ? 1_555 A C 25 N4 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A 2MG 10 O6 ? ? ? 1_555 A G 45 N2 ? ? A 2MG 10 A G 45 1_555 ? ? ? ? ? ? '2MG-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 48 O2 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 48 N3 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 18 N1 ? ? ? 1_555 A PSU 55 O4 ? ? A G 18 A PSU 55 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 N7 ? ? ? 1_555 A 7MG 46 N1 ? ? A G 22 A 7MG 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog41 hydrog ? ? A G 22 O6 ? ? ? 1_555 A 7MG 46 N2 ? ? A G 22 A 7MG 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog42 hydrog ? ? A M2G 26 N1 ? ? ? 1_555 A A 44 N1 ? ? A M2G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog43 hydrog ? ? A M2G 26 O6 ? ? ? 1_555 A A 44 N6 ? ? A M2G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog44 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 30 N1 ? ? ? 1_555 A 5MC 40 N3 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 30 N2 ? ? ? 1_555 A 5MC 40 O2 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 30 O6 ? ? ? 1_555 A 5MC 40 N4 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 31 N1 ? ? ? 1_555 A PSU 39 N3 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog56 hydrog ? ? A A 31 N6 ? ? ? 1_555 A PSU 39 O2 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog57 hydrog ? ? A OMC 32 O2 ? ? ? 1_555 A A 38 N6 ? ? A OMC 32 A A 38 1_555 ? ? ? ? ? ? 'OMC-A MISPAIR' ? ? ? hydrog58 hydrog ? ? A 5MC 49 N3 ? ? ? 1_555 A G 65 N1 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A 5MC 49 N4 ? ? ? 1_555 A G 65 O6 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A 5MC 49 O2 ? ? ? 1_555 A G 65 N2 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 50 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 50 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 52 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 52 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 52 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 52 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A 5MU 54 N3 ? ? ? 1_555 A 1MA 58 N7 ? ? A 5MU 54 A 1MA 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog72 hydrog ? ? A 5MU 54 O2 ? ? ? 1_555 A 1MA 58 N6 ? ? A 5MU 54 A 1MA 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 901 ? 5 'BINDING SITE FOR RESIDUE MG A 901' AC2 Software A MG 902 ? 4 'BINDING SITE FOR RESIDUE MG A 902' AC3 Software A MG 903 ? 6 'BINDING SITE FOR RESIDUE MG A 903' AC4 Software A MG 904 ? 6 'BINDING SITE FOR RESIDUE MG A 904' AC5 Software A MG 905 ? 4 'BINDING SITE FOR RESIDUE MG A 905' AC6 Software A MG 906 ? 2 'BINDING SITE FOR RESIDUE MG A 906' AC7 Software A MG 907 ? 2 'BINDING SITE FOR RESIDUE MG A 907' AC8 Software A MG 908 ? 2 'BINDING SITE FOR RESIDUE MG A 908' AC9 Software A MG 909 ? 3 'BINDING SITE FOR RESIDUE MG A 909' BC1 Software A MG 910 ? 2 'BINDING SITE FOR RESIDUE MG A 910' BC2 Software A SPM 501 ? 8 'BINDING SITE FOR RESIDUE SPM A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 U A 12 ? U A 12 . ? 1_555 ? 2 AC1 5 HOH M . ? HOH A 985 . ? 1_555 ? 3 AC1 5 HOH M . ? HOH A 986 . ? 1_555 ? 4 AC1 5 HOH M . ? HOH A 987 . ? 1_555 ? 5 AC1 5 HOH M . ? HOH A 988 . ? 1_555 ? 6 AC2 4 G A 20 ? G A 20 . ? 1_555 ? 7 AC2 4 A A 21 ? A A 21 . ? 1_555 ? 8 AC2 4 HOH M . ? HOH A 1105 . ? 1_555 ? 9 AC2 4 HOH M . ? HOH A 1114 . ? 1_555 ? 10 AC3 6 G A 19 ? G A 19 . ? 1_555 ? 11 AC3 6 HOH M . ? HOH A 918 . ? 1_555 ? 12 AC3 6 HOH M . ? HOH A 919 . ? 1_555 ? 13 AC3 6 HOH M . ? HOH A 920 . ? 1_555 ? 14 AC3 6 HOH M . ? HOH A 921 . ? 1_555 ? 15 AC3 6 HOH M . ? HOH A 922 . ? 1_555 ? 16 AC4 6 HOH M . ? HOH A 936 . ? 1_555 ? 17 AC4 6 HOH M . ? HOH A 937 . ? 1_555 ? 18 AC4 6 HOH M . ? HOH A 938 . ? 1_555 ? 19 AC4 6 HOH M . ? HOH A 939 . ? 1_555 ? 20 AC4 6 HOH M . ? HOH A 940 . ? 1_555 ? 21 AC4 6 HOH M . ? HOH A 941 . ? 1_555 ? 22 AC5 4 2MG A 10 ? 2MG A 10 . ? 1_555 ? 23 AC5 4 C A 11 ? C A 11 . ? 1_555 ? 24 AC5 4 HOH M . ? HOH A 977 . ? 1_555 ? 25 AC5 4 HOH M . ? HOH A 1034 . ? 1_555 ? 26 AC6 2 A A 35 ? A A 35 . ? 1_555 ? 27 AC6 2 A A 36 ? A A 36 . ? 1_555 ? 28 AC7 2 G A 43 ? G A 43 . ? 1_555 ? 29 AC7 2 HOH M . ? HOH A 971 . ? 1_555 ? 30 AC8 2 G A 71 ? G A 71 . ? 1_555 ? 31 AC8 2 C A 72 ? C A 72 . ? 1_555 ? 32 AC9 3 U A 52 ? U A 52 . ? 1_555 ? 33 AC9 3 HOH M . ? HOH A 1043 . ? 1_555 ? 34 AC9 3 HOH M . ? HOH A 1062 . ? 1_555 ? 35 BC1 2 A A 29 ? A A 29 . ? 1_555 ? 36 BC1 2 G A 30 ? G A 30 . ? 1_555 ? 37 BC2 8 A A 14 ? A A 14 . ? 1_565 ? 38 BC2 8 U A 52 ? U A 52 . ? 1_555 ? 39 BC2 8 G A 53 ? G A 53 . ? 1_555 ? 40 BC2 8 5MU A 54 ? 5MU A 54 . ? 1_555 ? 41 BC2 8 PSU A 55 ? PSU A 55 . ? 1_555 ? 42 BC2 8 G A 57 ? G A 57 . ? 1_555 ? 43 BC2 8 1MA A 58 ? 1MA A 58 . ? 1_555 ? 44 BC2 8 HOH M . ? HOH A 1108 . ? 1_565 ? # _database_PDB_matrix.entry_id 1EVV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EVV _atom_sites.fract_transf_matrix[1][1] 0.018099 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000120 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030314 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016160 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 2MG 10 10 10 2MG 2MG A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 H2U 16 16 16 H2U H2U A . n A 1 17 H2U 17 17 17 H2U H2U A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 M2G 26 26 26 M2G M2G A . n A 1 27 C 27 27 27 C C A . n A 1 28 C 28 28 28 C C A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 OMC 32 32 32 OMC OMC A . n A 1 33 U 33 33 33 U U A . n A 1 34 OMG 34 34 34 OMG OMG A . n A 1 35 A 35 35 35 A A A . n A 1 36 A 36 36 36 A A A . n A 1 37 YG 37 37 37 YG YG A . n A 1 38 A 38 38 38 A A A . n A 1 39 PSU 39 39 39 PSU PSU A . n A 1 40 5MC 40 40 40 5MC 5MC A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 A 44 44 44 A A A . n A 1 45 G 45 45 45 G G A . n A 1 46 7MG 46 46 46 7MG 7MG A . n A 1 47 U 47 47 47 U U A . n A 1 48 C 48 48 48 C C A . n A 1 49 5MC 49 49 49 5MC 5MC A . n A 1 50 U 50 50 50 U U A . n A 1 51 G 51 51 51 G G A . n A 1 52 U 52 52 52 U U A . n A 1 53 G 53 53 53 G G A . n A 1 54 5MU 54 54 54 5MU 5MU A . n A 1 55 PSU 55 55 55 PSU PSU A . n A 1 56 C 56 56 56 C C A . n A 1 57 G 57 57 57 G G A . n A 1 58 1MA 58 58 58 1MA 1MA A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n A 1 62 A 62 62 62 A A A . n A 1 63 C 63 63 63 C C A . n A 1 64 A 64 64 64 A A A . n A 1 65 G 65 65 65 G G A . n A 1 66 A 66 66 66 A A A . n A 1 67 A 67 67 67 A A A . n A 1 68 U 68 68 68 U U A . n A 1 69 U 69 69 69 U U A . n A 1 70 C 70 70 70 C C A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 A 73 73 73 A A A . n A 1 74 C 74 74 74 C C A . n A 1 75 C 75 75 75 C C A . n A 1 76 A 76 76 76 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 901 901 MG MG A . C 2 MG 1 902 902 MG MG A . D 2 MG 1 903 903 MG MG A . E 2 MG 1 904 904 MG MG A . F 2 MG 1 905 905 MG MG A . G 2 MG 1 906 906 MG MG A . H 2 MG 1 907 907 MG MG A . I 2 MG 1 908 908 MG MG A . J 2 MG 1 909 909 MG MG A . K 2 MG 1 910 910 MG MG A . L 3 SPM 1 501 501 SPM SPM A . M 4 HOH 1 911 1 HOH HOH A . M 4 HOH 2 912 2 HOH HOH A . M 4 HOH 3 913 3 HOH HOH A . M 4 HOH 4 914 4 HOH HOH A . M 4 HOH 5 915 5 HOH HOH A . M 4 HOH 6 916 6 HOH HOH A . M 4 HOH 7 917 7 HOH HOH A . M 4 HOH 8 918 8 HOH HOH A . M 4 HOH 9 919 9 HOH HOH A . M 4 HOH 10 920 10 HOH HOH A . M 4 HOH 11 921 11 HOH HOH A . M 4 HOH 12 922 12 HOH HOH A . M 4 HOH 13 923 13 HOH HOH A . M 4 HOH 14 924 14 HOH HOH A . M 4 HOH 15 925 15 HOH HOH A . M 4 HOH 16 926 16 HOH HOH A . M 4 HOH 17 927 17 HOH HOH A . M 4 HOH 18 928 18 HOH HOH A . M 4 HOH 19 929 19 HOH HOH A . M 4 HOH 20 930 20 HOH HOH A . M 4 HOH 21 931 21 HOH HOH A . M 4 HOH 22 932 22 HOH HOH A . M 4 HOH 23 933 23 HOH HOH A . M 4 HOH 24 934 24 HOH HOH A . M 4 HOH 25 935 25 HOH HOH A . M 4 HOH 26 936 26 HOH HOH A . M 4 HOH 27 937 27 HOH HOH A . M 4 HOH 28 938 28 HOH HOH A . M 4 HOH 29 939 29 HOH HOH A . M 4 HOH 30 940 30 HOH HOH A . M 4 HOH 31 941 31 HOH HOH A . M 4 HOH 32 942 32 HOH HOH A . M 4 HOH 33 943 33 HOH HOH A . M 4 HOH 34 944 34 HOH HOH A . M 4 HOH 35 945 35 HOH HOH A . M 4 HOH 36 946 36 HOH HOH A . M 4 HOH 37 947 37 HOH HOH A . M 4 HOH 38 948 38 HOH HOH A . M 4 HOH 39 949 39 HOH HOH A . M 4 HOH 40 950 40 HOH HOH A . M 4 HOH 41 951 41 HOH HOH A . M 4 HOH 42 952 42 HOH HOH A . M 4 HOH 43 953 43 HOH HOH A . M 4 HOH 44 954 44 HOH HOH A . M 4 HOH 45 955 45 HOH HOH A . M 4 HOH 46 956 46 HOH HOH A . M 4 HOH 47 957 47 HOH HOH A . M 4 HOH 48 958 48 HOH HOH A . M 4 HOH 49 959 49 HOH HOH A . M 4 HOH 50 960 50 HOH HOH A . M 4 HOH 51 961 51 HOH HOH A . M 4 HOH 52 962 52 HOH HOH A . M 4 HOH 53 963 53 HOH HOH A . M 4 HOH 54 964 54 HOH HOH A . M 4 HOH 55 965 55 HOH HOH A . M 4 HOH 56 966 56 HOH HOH A . M 4 HOH 57 967 57 HOH HOH A . M 4 HOH 58 968 58 HOH HOH A . M 4 HOH 59 969 59 HOH HOH A . M 4 HOH 60 970 60 HOH HOH A . M 4 HOH 61 971 61 HOH HOH A . M 4 HOH 62 972 62 HOH HOH A . M 4 HOH 63 973 63 HOH HOH A . M 4 HOH 64 974 64 HOH HOH A . M 4 HOH 65 975 65 HOH HOH A . M 4 HOH 66 976 66 HOH HOH A . M 4 HOH 67 977 67 HOH HOH A . M 4 HOH 68 978 68 HOH HOH A . M 4 HOH 69 979 69 HOH HOH A . M 4 HOH 70 980 70 HOH HOH A . M 4 HOH 71 981 71 HOH HOH A . M 4 HOH 72 982 72 HOH HOH A . M 4 HOH 73 983 73 HOH HOH A . M 4 HOH 74 984 74 HOH HOH A . M 4 HOH 75 985 75 HOH HOH A . M 4 HOH 76 986 76 HOH HOH A . M 4 HOH 77 987 77 HOH HOH A . M 4 HOH 78 988 78 HOH HOH A . M 4 HOH 79 989 79 HOH HOH A . M 4 HOH 80 990 80 HOH HOH A . M 4 HOH 81 991 81 HOH HOH A . M 4 HOH 82 992 82 HOH HOH A . M 4 HOH 83 993 83 HOH HOH A . M 4 HOH 84 994 84 HOH HOH A . M 4 HOH 85 995 85 HOH HOH A . M 4 HOH 86 996 86 HOH HOH A . M 4 HOH 87 997 87 HOH HOH A . M 4 HOH 88 998 88 HOH HOH A . M 4 HOH 89 999 89 HOH HOH A . M 4 HOH 90 1000 90 HOH HOH A . M 4 HOH 91 1001 91 HOH HOH A . M 4 HOH 92 1002 92 HOH HOH A . M 4 HOH 93 1003 93 HOH HOH A . M 4 HOH 94 1004 94 HOH HOH A . M 4 HOH 95 1005 95 HOH HOH A . M 4 HOH 96 1006 96 HOH HOH A . M 4 HOH 97 1007 97 HOH HOH A . M 4 HOH 98 1008 98 HOH HOH A . M 4 HOH 99 1009 99 HOH HOH A . M 4 HOH 100 1010 100 HOH HOH A . M 4 HOH 101 1011 101 HOH HOH A . M 4 HOH 102 1012 102 HOH HOH A . M 4 HOH 103 1013 103 HOH HOH A . M 4 HOH 104 1014 104 HOH HOH A . M 4 HOH 105 1015 105 HOH HOH A . M 4 HOH 106 1016 106 HOH HOH A . M 4 HOH 107 1017 107 HOH HOH A . M 4 HOH 108 1018 108 HOH HOH A . M 4 HOH 109 1019 109 HOH HOH A . M 4 HOH 110 1020 110 HOH HOH A . M 4 HOH 111 1021 111 HOH HOH A . M 4 HOH 112 1022 112 HOH HOH A . M 4 HOH 113 1023 113 HOH HOH A . M 4 HOH 114 1024 114 HOH HOH A . M 4 HOH 115 1025 115 HOH HOH A . M 4 HOH 116 1026 116 HOH HOH A . M 4 HOH 117 1027 117 HOH HOH A . M 4 HOH 118 1028 118 HOH HOH A . M 4 HOH 119 1029 119 HOH HOH A . M 4 HOH 120 1030 120 HOH HOH A . M 4 HOH 121 1031 121 HOH HOH A . M 4 HOH 122 1032 122 HOH HOH A . M 4 HOH 123 1033 123 HOH HOH A . M 4 HOH 124 1034 124 HOH HOH A . M 4 HOH 125 1035 125 HOH HOH A . M 4 HOH 126 1036 126 HOH HOH A . M 4 HOH 127 1037 127 HOH HOH A . M 4 HOH 128 1038 128 HOH HOH A . M 4 HOH 129 1039 129 HOH HOH A . M 4 HOH 130 1040 130 HOH HOH A . M 4 HOH 131 1041 131 HOH HOH A . M 4 HOH 132 1042 132 HOH HOH A . M 4 HOH 133 1043 133 HOH HOH A . M 4 HOH 134 1044 134 HOH HOH A . M 4 HOH 135 1045 135 HOH HOH A . M 4 HOH 136 1046 136 HOH HOH A . M 4 HOH 137 1047 137 HOH HOH A . M 4 HOH 138 1048 138 HOH HOH A . M 4 HOH 139 1049 139 HOH HOH A . M 4 HOH 140 1050 140 HOH HOH A . M 4 HOH 141 1051 141 HOH HOH A . M 4 HOH 142 1052 142 HOH HOH A . M 4 HOH 143 1053 143 HOH HOH A . M 4 HOH 144 1054 144 HOH HOH A . M 4 HOH 145 1055 145 HOH HOH A . M 4 HOH 146 1056 146 HOH HOH A . M 4 HOH 147 1057 147 HOH HOH A . M 4 HOH 148 1058 148 HOH HOH A . M 4 HOH 149 1059 149 HOH HOH A . M 4 HOH 150 1060 150 HOH HOH A . M 4 HOH 151 1061 151 HOH HOH A . M 4 HOH 152 1062 152 HOH HOH A . M 4 HOH 153 1063 153 HOH HOH A . M 4 HOH 154 1064 154 HOH HOH A . M 4 HOH 155 1065 155 HOH HOH A . M 4 HOH 156 1066 156 HOH HOH A . M 4 HOH 157 1067 157 HOH HOH A . M 4 HOH 158 1068 158 HOH HOH A . M 4 HOH 159 1069 159 HOH HOH A . M 4 HOH 160 1070 160 HOH HOH A . M 4 HOH 161 1071 161 HOH HOH A . M 4 HOH 162 1072 162 HOH HOH A . M 4 HOH 163 1073 163 HOH HOH A . M 4 HOH 164 1074 164 HOH HOH A . M 4 HOH 165 1075 165 HOH HOH A . M 4 HOH 166 1076 166 HOH HOH A . M 4 HOH 167 1077 167 HOH HOH A . M 4 HOH 168 1078 168 HOH HOH A . M 4 HOH 169 1079 169 HOH HOH A . M 4 HOH 170 1080 170 HOH HOH A . M 4 HOH 171 1081 171 HOH HOH A . M 4 HOH 172 1082 172 HOH HOH A . M 4 HOH 173 1083 173 HOH HOH A . M 4 HOH 174 1084 174 HOH HOH A . M 4 HOH 175 1085 175 HOH HOH A . M 4 HOH 176 1086 176 HOH HOH A . M 4 HOH 177 1087 177 HOH HOH A . M 4 HOH 178 1088 178 HOH HOH A . M 4 HOH 179 1089 179 HOH HOH A . M 4 HOH 180 1090 180 HOH HOH A . M 4 HOH 181 1091 181 HOH HOH A . M 4 HOH 182 1092 182 HOH HOH A . M 4 HOH 183 1093 183 HOH HOH A . M 4 HOH 184 1094 184 HOH HOH A . M 4 HOH 185 1095 185 HOH HOH A . M 4 HOH 186 1096 186 HOH HOH A . M 4 HOH 187 1097 187 HOH HOH A . M 4 HOH 188 1098 188 HOH HOH A . M 4 HOH 189 1099 189 HOH HOH A . M 4 HOH 190 1100 190 HOH HOH A . M 4 HOH 191 1101 191 HOH HOH A . M 4 HOH 192 1102 192 HOH HOH A . M 4 HOH 193 1103 193 HOH HOH A . M 4 HOH 194 1104 194 HOH HOH A . M 4 HOH 195 1105 195 HOH HOH A . M 4 HOH 196 1106 196 HOH HOH A . M 4 HOH 197 1107 197 HOH HOH A . M 4 HOH 198 1108 198 HOH HOH A . M 4 HOH 199 1109 199 HOH HOH A . M 4 HOH 200 1110 200 HOH HOH A . M 4 HOH 201 1111 201 HOH HOH A . M 4 HOH 202 1112 202 HOH HOH A . M 4 HOH 203 1113 203 HOH HOH A . M 4 HOH 204 1114 204 HOH HOH A . M 4 HOH 205 1115 205 HOH HOH A . M 4 HOH 206 1116 206 HOH HOH A . M 4 HOH 207 1117 207 HOH HOH A . M 4 HOH 208 1118 208 HOH HOH A . M 4 HOH 209 1119 209 HOH HOH A . M 4 HOH 210 1120 210 HOH HOH A . M 4 HOH 211 1121 211 HOH HOH A . M 4 HOH 212 1122 212 HOH HOH A . M 4 HOH 213 1123 213 HOH HOH A . M 4 HOH 214 1124 214 HOH HOH A . M 4 HOH 215 1125 215 HOH HOH A . M 4 HOH 216 1126 216 HOH HOH A . M 4 HOH 217 1127 217 HOH HOH A . M 4 HOH 218 1128 218 HOH HOH A . M 4 HOH 219 1129 219 HOH HOH A . M 4 HOH 220 1130 220 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 2MG 10 A 2MG 10 ? G "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" 2 A H2U 16 A H2U 16 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 3 A H2U 17 A H2U 17 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 4 A M2G 26 A M2G 26 ? G "N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE" 5 A OMC 32 A OMC 32 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 6 A OMG 34 A OMG 34 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 7 A YG 37 A YG 37 ? G WYBUTOSINE 8 A PSU 39 A PSU 39 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 9 A 5MC 40 A 5MC 40 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 10 A 7MG 46 A 7MG 46 ? G ? 11 A 5MC 49 A 5MC 49 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 12 A 5MU 54 A 5MU 54 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; 13 A PSU 55 A PSU 55 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 14 A 1MA 58 A 1MA 58 ? A ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A C 11 ? A C 11 ? 1_555 MG ? F MG . ? A MG 905 ? 1_555 OP2 ? A C 11 ? A C 11 ? 1_555 73.6 ? 2 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 918 ? 1_555 106.6 ? 3 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 919 ? 1_555 99.8 ? 4 O ? M HOH . ? A HOH 918 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 919 ? 1_555 87.4 ? 5 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 920 ? 1_555 170.7 ? 6 O ? M HOH . ? A HOH 918 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 920 ? 1_555 82.5 ? 7 O ? M HOH . ? A HOH 919 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 920 ? 1_555 81.7 ? 8 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 921 ? 1_555 94.7 ? 9 O ? M HOH . ? A HOH 918 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 921 ? 1_555 89.9 ? 10 O ? M HOH . ? A HOH 919 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 921 ? 1_555 165.5 ? 11 O ? M HOH . ? A HOH 920 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 921 ? 1_555 83.8 ? 12 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 922 ? 1_555 88.9 ? 13 O ? M HOH . ? A HOH 918 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 922 ? 1_555 163.1 ? 14 O ? M HOH . ? A HOH 919 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 922 ? 1_555 83.5 ? 15 O ? M HOH . ? A HOH 920 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 922 ? 1_555 82.1 ? 16 O ? M HOH . ? A HOH 921 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 922 ? 1_555 95.3 ? 17 OP1 ? A G 20 ? A G 20 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 OP2 ? A A 21 ? A A 21 ? 1_555 101.1 ? 18 OP1 ? A G 20 ? A G 20 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1105 ? 1_555 108.3 ? 19 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1105 ? 1_555 104.2 ? 20 OP1 ? A G 20 ? A G 20 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1114 ? 1_555 84.1 ? 21 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1114 ? 1_555 162.8 ? 22 O ? M HOH . ? A HOH 1105 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1114 ? 1_555 89.5 ? 23 OP2 ? A G 43 ? A G 43 ? 1_555 MG ? H MG . ? A MG 907 ? 1_555 O ? M HOH . ? A HOH 971 ? 1_555 127.2 ? 24 OP1 ? A U 52 ? A U 52 ? 1_555 MG ? J MG . ? A MG 909 ? 1_555 O ? M HOH . ? A HOH 1043 ? 1_555 125.6 ? 25 OP1 ? A U 52 ? A U 52 ? 1_555 MG ? J MG . ? A MG 909 ? 1_555 O ? M HOH . ? A HOH 1062 ? 1_555 102.3 ? 26 O ? M HOH . ? A HOH 1043 ? 1_555 MG ? J MG . ? A MG 909 ? 1_555 O ? M HOH . ? A HOH 1062 ? 1_555 109.7 ? 27 "O3'" ? A G 71 ? A G 71 ? 1_555 MG ? I MG . ? A MG 908 ? 1_555 OP1 ? A C 72 ? A C 72 ? 1_555 67.4 ? 28 "O3'" ? A G 71 ? A G 71 ? 1_555 MG ? I MG . ? A MG 908 ? 1_555 OP2 ? A C 72 ? A C 72 ? 1_555 72.1 ? 29 OP1 ? A C 72 ? A C 72 ? 1_555 MG ? I MG . ? A MG 908 ? 1_555 OP2 ? A C 72 ? A C 72 ? 1_555 65.7 ? 30 O ? M HOH . ? A HOH 936 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 937 ? 1_555 85.9 ? 31 O ? M HOH . ? A HOH 936 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 938 ? 1_555 92.9 ? 32 O ? M HOH . ? A HOH 937 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 938 ? 1_555 173.6 ? 33 O ? M HOH . ? A HOH 936 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 939 ? 1_555 170.5 ? 34 O ? M HOH . ? A HOH 937 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 939 ? 1_555 86.1 ? 35 O ? M HOH . ? A HOH 938 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 939 ? 1_555 94.5 ? 36 O ? M HOH . ? A HOH 936 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 940 ? 1_555 98.7 ? 37 O ? M HOH . ? A HOH 937 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 940 ? 1_555 87.7 ? 38 O ? M HOH . ? A HOH 938 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 940 ? 1_555 98.7 ? 39 O ? M HOH . ? A HOH 939 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 940 ? 1_555 86.1 ? 40 O ? M HOH . ? A HOH 936 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 941 ? 1_555 74.9 ? 41 O ? M HOH . ? A HOH 937 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 941 ? 1_555 91.4 ? 42 O ? M HOH . ? A HOH 938 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 941 ? 1_555 82.3 ? 43 O ? M HOH . ? A HOH 939 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 941 ? 1_555 100.1 ? 44 O ? M HOH . ? A HOH 940 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 941 ? 1_555 173.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-05-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 9 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 10 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 11 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 CNS phasing . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.520 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.087 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 18 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 18 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 18 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.01 _pdbx_validate_rmsd_angle.angle_target_value 109.10 _pdbx_validate_rmsd_angle.angle_deviation -10.09 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 18 ? ? 0.051 'SIDE CHAIN' 2 1 G A 19 ? ? 0.057 'SIDE CHAIN' 3 1 A A 62 ? ? 0.053 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1MA P P N N 1 1MA OP1 O N N 2 1MA OP2 O N N 3 1MA OP3 O N N 4 1MA "O5'" O N N 5 1MA "C5'" C N N 6 1MA "C4'" C N R 7 1MA "O4'" O N N 8 1MA "C3'" C N S 9 1MA "O3'" O N N 10 1MA "C2'" C N R 11 1MA "O2'" O N N 12 1MA "C1'" C N R 13 1MA N9 N Y N 14 1MA C8 C Y N 15 1MA N7 N Y N 16 1MA C5 C Y N 17 1MA C6 C N N 18 1MA N6 N N N 19 1MA N1 N N N 20 1MA CM1 C N N 21 1MA C2 C N N 22 1MA N3 N N N 23 1MA C4 C Y N 24 1MA HOP2 H N N 25 1MA HOP3 H N N 26 1MA "H5'" H N N 27 1MA "H5''" H N N 28 1MA "H4'" H N N 29 1MA "H3'" H N N 30 1MA "HO3'" H N N 31 1MA "H2'" H N N 32 1MA "HO2'" H N N 33 1MA "H1'" H N N 34 1MA H8 H N N 35 1MA HN61 H N N 36 1MA HM11 H N N 37 1MA HM12 H N N 38 1MA HM13 H N N 39 1MA H2 H N N 40 2MG P P N N 41 2MG OP1 O N N 42 2MG OP2 O N N 43 2MG OP3 O N N 44 2MG "O5'" O N N 45 2MG "C5'" C N N 46 2MG "C4'" C N R 47 2MG "O4'" O N N 48 2MG "C3'" C N S 49 2MG "O3'" O N N 50 2MG "C2'" C N R 51 2MG "O2'" O N N 52 2MG "C1'" C N R 53 2MG N9 N Y N 54 2MG C8 C Y N 55 2MG N7 N Y N 56 2MG C5 C Y N 57 2MG C6 C N N 58 2MG O6 O N N 59 2MG N1 N N N 60 2MG C2 C N N 61 2MG N2 N N N 62 2MG CM2 C N N 63 2MG N3 N N N 64 2MG C4 C Y N 65 2MG HOP2 H N N 66 2MG HOP3 H N N 67 2MG "H5'" H N N 68 2MG "H5''" H N N 69 2MG "H4'" H N N 70 2MG "H3'" H N N 71 2MG "HO3'" H N N 72 2MG "H2'" H N N 73 2MG "HO2'" H N N 74 2MG "H1'" H N N 75 2MG H8 H N N 76 2MG HN1 H N N 77 2MG HN2 H N N 78 2MG HM21 H N N 79 2MG HM22 H N N 80 2MG HM23 H N N 81 5MC P P N N 82 5MC OP1 O N N 83 5MC OP2 O N N 84 5MC OP3 O N N 85 5MC "O5'" O N N 86 5MC "C5'" C N N 87 5MC "C4'" C N R 88 5MC "O4'" O N N 89 5MC "C3'" C N S 90 5MC "O3'" O N N 91 5MC "C2'" C N R 92 5MC "O2'" O N N 93 5MC "C1'" C N R 94 5MC N1 N N N 95 5MC C2 C N N 96 5MC O2 O N N 97 5MC N3 N N N 98 5MC C4 C N N 99 5MC N4 N N N 100 5MC C5 C N N 101 5MC C6 C N N 102 5MC CM5 C N N 103 5MC HOP2 H N N 104 5MC HOP3 H N N 105 5MC "H5'" H N N 106 5MC "H5''" H N N 107 5MC "H4'" H N N 108 5MC "H3'" H N N 109 5MC "HO3'" H N N 110 5MC "H2'" H N N 111 5MC "HO2'" H N N 112 5MC "H1'" H N N 113 5MC HN41 H N N 114 5MC HN42 H N N 115 5MC H6 H N N 116 5MC HM51 H N N 117 5MC HM52 H N N 118 5MC HM53 H N N 119 5MU N1 N N N 120 5MU C2 C N N 121 5MU N3 N N N 122 5MU C4 C N N 123 5MU C5 C N N 124 5MU C5M C N N 125 5MU C6 C N N 126 5MU O2 O N N 127 5MU O4 O N N 128 5MU "C1'" C N R 129 5MU "C2'" C N R 130 5MU "O2'" O N N 131 5MU "C3'" C N S 132 5MU "C4'" C N R 133 5MU "O3'" O N N 134 5MU "O4'" O N N 135 5MU "C5'" C N N 136 5MU "O5'" O N N 137 5MU P P N N 138 5MU OP1 O N N 139 5MU OP2 O N N 140 5MU OP3 O N N 141 5MU HN3 H N N 142 5MU H71 H N N 143 5MU H72 H N N 144 5MU H73 H N N 145 5MU H6 H N N 146 5MU "H1'" H N N 147 5MU "H2'" H N N 148 5MU "HO2'" H N N 149 5MU "H3'" H N N 150 5MU "H4'" H N N 151 5MU "HO3'" H N N 152 5MU "H5'" H N N 153 5MU "H5''" H N N 154 5MU HOP2 H N N 155 5MU HOP3 H N N 156 7MG P P N N 157 7MG OP1 O N N 158 7MG OP2 O N N 159 7MG OP3 O N N 160 7MG "O5'" O N N 161 7MG "C5'" C N N 162 7MG "C4'" C N R 163 7MG "O4'" O N N 164 7MG "C3'" C N S 165 7MG "O3'" O N N 166 7MG "C2'" C N R 167 7MG "O2'" O N N 168 7MG "C1'" C N R 169 7MG N9 N N N 170 7MG C8 C N N 171 7MG N7 N N N 172 7MG C5 C N N 173 7MG C6 C N N 174 7MG O6 O N N 175 7MG N1 N N N 176 7MG C2 C N N 177 7MG N2 N N N 178 7MG N3 N N N 179 7MG C4 C N N 180 7MG CM7 C N N 181 7MG HOP2 H N N 182 7MG HOP3 H N N 183 7MG "H5'" H N N 184 7MG "H5''" H N N 185 7MG "H4'" H N N 186 7MG "H3'" H N N 187 7MG "HO3'" H N N 188 7MG "H2'" H N N 189 7MG "HO2'" H N N 190 7MG "H1'" H N N 191 7MG H81 H N N 192 7MG H82 H N N 193 7MG HN1 H N N 194 7MG HN21 H N N 195 7MG HN22 H N N 196 7MG HM71 H N N 197 7MG HM72 H N N 198 7MG HM73 H N N 199 A OP3 O N N 200 A P P N N 201 A OP1 O N N 202 A OP2 O N N 203 A "O5'" O N N 204 A "C5'" C N N 205 A "C4'" C N R 206 A "O4'" O N N 207 A "C3'" C N S 208 A "O3'" O N N 209 A "C2'" C N R 210 A "O2'" O N N 211 A "C1'" C N R 212 A N9 N Y N 213 A C8 C Y N 214 A N7 N Y N 215 A C5 C Y N 216 A C6 C Y N 217 A N6 N N N 218 A N1 N Y N 219 A C2 C Y N 220 A N3 N Y N 221 A C4 C Y N 222 A HOP3 H N N 223 A HOP2 H N N 224 A "H5'" H N N 225 A "H5''" H N N 226 A "H4'" H N N 227 A "H3'" H N N 228 A "HO3'" H N N 229 A "H2'" H N N 230 A "HO2'" H N N 231 A "H1'" H N N 232 A H8 H N N 233 A H61 H N N 234 A H62 H N N 235 A H2 H N N 236 C OP3 O N N 237 C P P N N 238 C OP1 O N N 239 C OP2 O N N 240 C "O5'" O N N 241 C "C5'" C N N 242 C "C4'" C N R 243 C "O4'" O N N 244 C "C3'" C N S 245 C "O3'" O N N 246 C "C2'" C N R 247 C "O2'" O N N 248 C "C1'" C N R 249 C N1 N N N 250 C C2 C N N 251 C O2 O N N 252 C N3 N N N 253 C C4 C N N 254 C N4 N N N 255 C C5 C N N 256 C C6 C N N 257 C HOP3 H N N 258 C HOP2 H N N 259 C "H5'" H N N 260 C "H5''" H N N 261 C "H4'" H N N 262 C "H3'" H N N 263 C "HO3'" H N N 264 C "H2'" H N N 265 C "HO2'" H N N 266 C "H1'" H N N 267 C H41 H N N 268 C H42 H N N 269 C H5 H N N 270 C H6 H N N 271 G OP3 O N N 272 G P P N N 273 G OP1 O N N 274 G OP2 O N N 275 G "O5'" O N N 276 G "C5'" C N N 277 G "C4'" C N R 278 G "O4'" O N N 279 G "C3'" C N S 280 G "O3'" O N N 281 G "C2'" C N R 282 G "O2'" O N N 283 G "C1'" C N R 284 G N9 N Y N 285 G C8 C Y N 286 G N7 N Y N 287 G C5 C Y N 288 G C6 C N N 289 G O6 O N N 290 G N1 N N N 291 G C2 C N N 292 G N2 N N N 293 G N3 N N N 294 G C4 C Y N 295 G HOP3 H N N 296 G HOP2 H N N 297 G "H5'" H N N 298 G "H5''" H N N 299 G "H4'" H N N 300 G "H3'" H N N 301 G "HO3'" H N N 302 G "H2'" H N N 303 G "HO2'" H N N 304 G "H1'" H N N 305 G H8 H N N 306 G H1 H N N 307 G H21 H N N 308 G H22 H N N 309 H2U P P N N 310 H2U OP1 O N N 311 H2U OP2 O N N 312 H2U OP3 O N N 313 H2U "O5'" O N N 314 H2U "C5'" C N N 315 H2U "C4'" C N R 316 H2U "O4'" O N N 317 H2U "C3'" C N S 318 H2U "O3'" O N N 319 H2U "C1'" C N R 320 H2U "C2'" C N R 321 H2U "O2'" O N N 322 H2U N1 N N N 323 H2U C2 C N N 324 H2U O2 O N N 325 H2U N3 N N N 326 H2U C4 C N N 327 H2U O4 O N N 328 H2U C5 C N N 329 H2U C6 C N N 330 H2U HOP2 H N N 331 H2U HOP3 H N N 332 H2U "H5'" H N N 333 H2U "H5''" H N N 334 H2U "H4'" H N N 335 H2U "H3'" H N N 336 H2U "HO3'" H N N 337 H2U "H1'" H N N 338 H2U "H2'" H N N 339 H2U "HO2'" H N N 340 H2U HN3 H N N 341 H2U H51 H N N 342 H2U H52 H N N 343 H2U H61 H N N 344 H2U H62 H N N 345 HOH O O N N 346 HOH H1 H N N 347 HOH H2 H N N 348 M2G P P N N 349 M2G OP1 O N N 350 M2G OP2 O N N 351 M2G OP3 O N N 352 M2G "O5'" O N N 353 M2G "C5'" C N N 354 M2G "C4'" C N R 355 M2G "O4'" O N N 356 M2G "C3'" C N S 357 M2G "O3'" O N N 358 M2G "C2'" C N R 359 M2G "O2'" O N N 360 M2G "C1'" C N R 361 M2G N9 N Y N 362 M2G C8 C Y N 363 M2G N7 N Y N 364 M2G C5 C Y N 365 M2G C6 C N N 366 M2G O6 O N N 367 M2G N1 N N N 368 M2G C2 C N N 369 M2G N2 N N N 370 M2G N3 N N N 371 M2G C4 C Y N 372 M2G CM1 C N N 373 M2G CM2 C N N 374 M2G HOP2 H N N 375 M2G HOP3 H N N 376 M2G "H5'" H N N 377 M2G "H5''" H N N 378 M2G "H4'" H N N 379 M2G "H3'" H N N 380 M2G "HO3'" H N N 381 M2G "H2'" H N N 382 M2G "HO2'" H N N 383 M2G "H1'" H N N 384 M2G H8 H N N 385 M2G HN1 H N N 386 M2G HM11 H N N 387 M2G HM12 H N N 388 M2G HM13 H N N 389 M2G HM21 H N N 390 M2G HM22 H N N 391 M2G HM23 H N N 392 MG MG MG N N 393 OMC N1 N N N 394 OMC C2 C N N 395 OMC N3 N N N 396 OMC C4 C N N 397 OMC C5 C N N 398 OMC C6 C N N 399 OMC O2 O N N 400 OMC N4 N N N 401 OMC "C1'" C N R 402 OMC "C2'" C N R 403 OMC "O2'" O N N 404 OMC CM2 C N N 405 OMC "C3'" C N R 406 OMC "C4'" C N R 407 OMC "O4'" O N N 408 OMC "O3'" O N N 409 OMC "C5'" C N N 410 OMC "O5'" O N N 411 OMC P P N N 412 OMC OP1 O N N 413 OMC OP2 O N N 414 OMC OP3 O N N 415 OMC H5 H N N 416 OMC H6 H N N 417 OMC HN41 H N N 418 OMC HN42 H N N 419 OMC "H1'" H N N 420 OMC "H2'" H N N 421 OMC HM21 H N N 422 OMC HM22 H N N 423 OMC HM23 H N N 424 OMC "H3'" H N N 425 OMC "H4'" H N N 426 OMC "HO3'" H N N 427 OMC "H5'" H N N 428 OMC "H5''" H N N 429 OMC HOP2 H N N 430 OMC HOP3 H N N 431 OMG P P N N 432 OMG OP1 O N N 433 OMG OP2 O N N 434 OMG OP3 O N N 435 OMG "O5'" O N N 436 OMG "C5'" C N N 437 OMG "C4'" C N R 438 OMG "O4'" O N N 439 OMG "C3'" C N R 440 OMG "O3'" O N N 441 OMG "C2'" C N R 442 OMG "O2'" O N N 443 OMG CM2 C N N 444 OMG "C1'" C N R 445 OMG N9 N Y N 446 OMG C8 C Y N 447 OMG N7 N Y N 448 OMG C5 C Y N 449 OMG C6 C N N 450 OMG O6 O N N 451 OMG N1 N N N 452 OMG C2 C N N 453 OMG N2 N N N 454 OMG N3 N N N 455 OMG C4 C Y N 456 OMG HOP2 H N N 457 OMG HOP3 H N N 458 OMG "H5'" H N N 459 OMG "H5''" H N N 460 OMG "H4'" H N N 461 OMG "H3'" H N N 462 OMG "HO3'" H N N 463 OMG "H2'" H N N 464 OMG HM21 H N N 465 OMG HM22 H N N 466 OMG HM23 H N N 467 OMG "H1'" H N N 468 OMG H8 H N N 469 OMG HN1 H N N 470 OMG HN21 H N N 471 OMG HN22 H N N 472 PSU N1 N N N 473 PSU C2 C N N 474 PSU N3 N N N 475 PSU C4 C N N 476 PSU C5 C N N 477 PSU C6 C N N 478 PSU O2 O N N 479 PSU O4 O N N 480 PSU "C1'" C N S 481 PSU "C2'" C N R 482 PSU "O2'" O N N 483 PSU "C3'" C N S 484 PSU "C4'" C N R 485 PSU "O3'" O N N 486 PSU "O4'" O N N 487 PSU "C5'" C N N 488 PSU "O5'" O N N 489 PSU P P N N 490 PSU OP1 O N N 491 PSU OP2 O N N 492 PSU OP3 O N N 493 PSU HN1 H N N 494 PSU HN3 H N N 495 PSU H6 H N N 496 PSU "H1'" H N N 497 PSU "H2'" H N N 498 PSU "HO2'" H N N 499 PSU "H3'" H N N 500 PSU "H4'" H N N 501 PSU "HO3'" H N N 502 PSU "H5'" H N N 503 PSU "H5''" H N N 504 PSU HOP2 H N N 505 PSU HOP3 H N N 506 SPM N1 N N N 507 SPM C2 C N N 508 SPM C3 C N N 509 SPM C4 C N N 510 SPM N5 N N N 511 SPM C6 C N N 512 SPM C7 C N N 513 SPM C8 C N N 514 SPM C9 C N N 515 SPM N10 N N N 516 SPM C11 C N N 517 SPM C12 C N N 518 SPM C13 C N N 519 SPM N14 N N N 520 SPM HN11 H N N 521 SPM HN12 H N N 522 SPM H21 H N N 523 SPM H22 H N N 524 SPM H31 H N N 525 SPM H32 H N N 526 SPM H41 H N N 527 SPM H42 H N N 528 SPM HN5 H N N 529 SPM H61 H N N 530 SPM H62 H N N 531 SPM H71 H N N 532 SPM H72 H N N 533 SPM H81 H N N 534 SPM H82 H N N 535 SPM H91 H N N 536 SPM H92 H N N 537 SPM HN0 H N N 538 SPM H111 H N N 539 SPM H112 H N N 540 SPM H121 H N N 541 SPM H122 H N N 542 SPM H131 H N N 543 SPM H132 H N N 544 SPM HN41 H N N 545 SPM HN42 H N N 546 U OP3 O N N 547 U P P N N 548 U OP1 O N N 549 U OP2 O N N 550 U "O5'" O N N 551 U "C5'" C N N 552 U "C4'" C N R 553 U "O4'" O N N 554 U "C3'" C N S 555 U "O3'" O N N 556 U "C2'" C N R 557 U "O2'" O N N 558 U "C1'" C N R 559 U N1 N N N 560 U C2 C N N 561 U O2 O N N 562 U N3 N N N 563 U C4 C N N 564 U O4 O N N 565 U C5 C N N 566 U C6 C N N 567 U HOP3 H N N 568 U HOP2 H N N 569 U "H5'" H N N 570 U "H5''" H N N 571 U "H4'" H N N 572 U "H3'" H N N 573 U "HO3'" H N N 574 U "H2'" H N N 575 U "HO2'" H N N 576 U "H1'" H N N 577 U H3 H N N 578 U H5 H N N 579 U H6 H N N 580 YG N1 N Y N 581 YG N2 N Y N 582 YG C2 C Y N 583 YG N3 N N N 584 YG C3 C N N 585 YG C4 C Y N 586 YG C5 C Y N 587 YG C6 C N N 588 YG O6 O N N 589 YG N7 N Y N 590 YG C8 C Y N 591 YG N9 N Y N 592 YG C10 C N N 593 YG C11 C Y N 594 YG C12 C Y N 595 YG C13 C N N 596 YG C14 C N N 597 YG C15 C N R 598 YG C16 C N N 599 YG O17 O N N 600 YG O18 O N N 601 YG C19 C N N 602 YG N20 N N N 603 YG C21 C N N 604 YG O22 O N N 605 YG O23 O N N 606 YG C24 C N N 607 YG "C1'" C N R 608 YG "C2'" C N R 609 YG "O2'" O N N 610 YG "C3'" C N S 611 YG "O3'" O N N 612 YG "C4'" C N R 613 YG "O4'" O N N 614 YG "C5'" C N N 615 YG "O5'" O N N 616 YG P P N N 617 YG OP1 O N N 618 YG OP2 O N N 619 YG OP3 O N N 620 YG H31 H N N 621 YG H32 H N N 622 YG H33 H N N 623 YG H8 H N N 624 YG H101 H N N 625 YG H102 H N N 626 YG H103 H N N 627 YG H131 H N N 628 YG H132 H N N 629 YG H141 H N N 630 YG H142 H N N 631 YG H15 H N N 632 YG H191 H N N 633 YG H192 H N N 634 YG H193 H N N 635 YG HN2 H N N 636 YG H241 H N N 637 YG H242 H N N 638 YG H243 H N N 639 YG "H1'" H N N 640 YG "H2'" H N N 641 YG "HO2'" H N N 642 YG "H3'" H N N 643 YG "HO3'" H N N 644 YG "H4'" H N N 645 YG "H5'" H N N 646 YG "H5''" H N N 647 YG HOP2 H N N 648 YG HOP3 H N N 649 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1MA P OP1 doub N N 1 1MA P OP2 sing N N 2 1MA P OP3 sing N N 3 1MA P "O5'" sing N N 4 1MA OP2 HOP2 sing N N 5 1MA OP3 HOP3 sing N N 6 1MA "O5'" "C5'" sing N N 7 1MA "C5'" "C4'" sing N N 8 1MA "C5'" "H5'" sing N N 9 1MA "C5'" "H5''" sing N N 10 1MA "C4'" "O4'" sing N N 11 1MA "C4'" "C3'" sing N N 12 1MA "C4'" "H4'" sing N N 13 1MA "O4'" "C1'" sing N N 14 1MA "C3'" "O3'" sing N N 15 1MA "C3'" "C2'" sing N N 16 1MA "C3'" "H3'" sing N N 17 1MA "O3'" "HO3'" sing N N 18 1MA "C2'" "O2'" sing N N 19 1MA "C2'" "C1'" sing N N 20 1MA "C2'" "H2'" sing N N 21 1MA "O2'" "HO2'" sing N N 22 1MA "C1'" N9 sing N N 23 1MA "C1'" "H1'" sing N N 24 1MA N9 C8 sing Y N 25 1MA N9 C4 sing Y N 26 1MA C8 N7 doub Y N 27 1MA C8 H8 sing N N 28 1MA N7 C5 sing Y N 29 1MA C5 C6 sing N N 30 1MA C5 C4 doub Y N 31 1MA C6 N6 doub N N 32 1MA C6 N1 sing N N 33 1MA N6 HN61 sing N N 34 1MA N1 CM1 sing N N 35 1MA N1 C2 sing N N 36 1MA CM1 HM11 sing N N 37 1MA CM1 HM12 sing N N 38 1MA CM1 HM13 sing N N 39 1MA C2 N3 doub N N 40 1MA C2 H2 sing N N 41 1MA N3 C4 sing N N 42 2MG P OP1 doub N N 43 2MG P OP2 sing N N 44 2MG P OP3 sing N N 45 2MG P "O5'" sing N N 46 2MG OP2 HOP2 sing N N 47 2MG OP3 HOP3 sing N N 48 2MG "O5'" "C5'" sing N N 49 2MG "C5'" "C4'" sing N N 50 2MG "C5'" "H5'" sing N N 51 2MG "C5'" "H5''" sing N N 52 2MG "C4'" "O4'" sing N N 53 2MG "C4'" "C3'" sing N N 54 2MG "C4'" "H4'" sing N N 55 2MG "O4'" "C1'" sing N N 56 2MG "C3'" "O3'" sing N N 57 2MG "C3'" "C2'" sing N N 58 2MG "C3'" "H3'" sing N N 59 2MG "O3'" "HO3'" sing N N 60 2MG "C2'" "O2'" sing N N 61 2MG "C2'" "C1'" sing N N 62 2MG "C2'" "H2'" sing N N 63 2MG "O2'" "HO2'" sing N N 64 2MG "C1'" N9 sing N N 65 2MG "C1'" "H1'" sing N N 66 2MG N9 C8 sing Y N 67 2MG N9 C4 sing Y N 68 2MG C8 N7 doub Y N 69 2MG C8 H8 sing N N 70 2MG N7 C5 sing Y N 71 2MG C5 C6 sing N N 72 2MG C5 C4 doub Y N 73 2MG C6 O6 doub N N 74 2MG C6 N1 sing N N 75 2MG N1 C2 sing N N 76 2MG N1 HN1 sing N N 77 2MG C2 N2 sing N N 78 2MG C2 N3 doub N N 79 2MG N2 CM2 sing N N 80 2MG N2 HN2 sing N N 81 2MG CM2 HM21 sing N N 82 2MG CM2 HM22 sing N N 83 2MG CM2 HM23 sing N N 84 2MG N3 C4 sing N N 85 5MC P OP1 doub N N 86 5MC P OP2 sing N N 87 5MC P OP3 sing N N 88 5MC P "O5'" sing N N 89 5MC OP2 HOP2 sing N N 90 5MC OP3 HOP3 sing N N 91 5MC "O5'" "C5'" sing N N 92 5MC "C5'" "C4'" sing N N 93 5MC "C5'" "H5'" sing N N 94 5MC "C5'" "H5''" sing N N 95 5MC "C4'" "O4'" sing N N 96 5MC "C4'" "C3'" sing N N 97 5MC "C4'" "H4'" sing N N 98 5MC "O4'" "C1'" sing N N 99 5MC "C3'" "O3'" sing N N 100 5MC "C3'" "C2'" sing N N 101 5MC "C3'" "H3'" sing N N 102 5MC "O3'" "HO3'" sing N N 103 5MC "C2'" "O2'" sing N N 104 5MC "C2'" "C1'" sing N N 105 5MC "C2'" "H2'" sing N N 106 5MC "O2'" "HO2'" sing N N 107 5MC "C1'" N1 sing N N 108 5MC "C1'" "H1'" sing N N 109 5MC N1 C2 sing N N 110 5MC N1 C6 sing N N 111 5MC C2 O2 doub N N 112 5MC C2 N3 sing N N 113 5MC N3 C4 doub N N 114 5MC C4 N4 sing N N 115 5MC C4 C5 sing N N 116 5MC N4 HN41 sing N N 117 5MC N4 HN42 sing N N 118 5MC C5 C6 doub N N 119 5MC C5 CM5 sing N N 120 5MC C6 H6 sing N N 121 5MC CM5 HM51 sing N N 122 5MC CM5 HM52 sing N N 123 5MC CM5 HM53 sing N N 124 5MU N1 C2 sing N N 125 5MU N1 C6 sing N N 126 5MU N1 "C1'" sing N N 127 5MU C2 N3 sing N N 128 5MU C2 O2 doub N N 129 5MU N3 C4 sing N N 130 5MU N3 HN3 sing N N 131 5MU C4 C5 sing N N 132 5MU C4 O4 doub N N 133 5MU C5 C5M sing N N 134 5MU C5 C6 doub N N 135 5MU C5M H71 sing N N 136 5MU C5M H72 sing N N 137 5MU C5M H73 sing N N 138 5MU C6 H6 sing N N 139 5MU "C1'" "C2'" sing N N 140 5MU "C1'" "O4'" sing N N 141 5MU "C1'" "H1'" sing N N 142 5MU "C2'" "O2'" sing N N 143 5MU "C2'" "C3'" sing N N 144 5MU "C2'" "H2'" sing N N 145 5MU "O2'" "HO2'" sing N N 146 5MU "C3'" "C4'" sing N N 147 5MU "C3'" "O3'" sing N N 148 5MU "C3'" "H3'" sing N N 149 5MU "C4'" "O4'" sing N N 150 5MU "C4'" "C5'" sing N N 151 5MU "C4'" "H4'" sing N N 152 5MU "O3'" "HO3'" sing N N 153 5MU "C5'" "O5'" sing N N 154 5MU "C5'" "H5'" sing N N 155 5MU "C5'" "H5''" sing N N 156 5MU "O5'" P sing N N 157 5MU P OP1 doub N N 158 5MU P OP2 sing N N 159 5MU P OP3 sing N N 160 5MU OP2 HOP2 sing N N 161 5MU OP3 HOP3 sing N N 162 7MG P OP1 doub N N 163 7MG P OP2 sing N N 164 7MG P OP3 sing N N 165 7MG P "O5'" sing N N 166 7MG OP2 HOP2 sing N N 167 7MG OP3 HOP3 sing N N 168 7MG "O5'" "C5'" sing N N 169 7MG "C5'" "C4'" sing N N 170 7MG "C5'" "H5'" sing N N 171 7MG "C5'" "H5''" sing N N 172 7MG "C4'" "O4'" sing N N 173 7MG "C4'" "C3'" sing N N 174 7MG "C4'" "H4'" sing N N 175 7MG "O4'" "C1'" sing N N 176 7MG "C3'" "O3'" sing N N 177 7MG "C3'" "C2'" sing N N 178 7MG "C3'" "H3'" sing N N 179 7MG "O3'" "HO3'" sing N N 180 7MG "C2'" "O2'" sing N N 181 7MG "C2'" "C1'" sing N N 182 7MG "C2'" "H2'" sing N N 183 7MG "O2'" "HO2'" sing N N 184 7MG "C1'" N9 sing N N 185 7MG "C1'" "H1'" sing N N 186 7MG N9 C8 sing N N 187 7MG N9 C4 sing N N 188 7MG C8 N7 sing N N 189 7MG C8 H81 sing N N 190 7MG C8 H82 sing N N 191 7MG N7 C5 sing N N 192 7MG N7 CM7 sing N N 193 7MG C5 C6 sing N N 194 7MG C5 C4 doub N N 195 7MG C6 O6 doub N N 196 7MG C6 N1 sing N N 197 7MG N1 C2 sing N N 198 7MG N1 HN1 sing N N 199 7MG C2 N2 sing N N 200 7MG C2 N3 doub N N 201 7MG N2 HN21 sing N N 202 7MG N2 HN22 sing N N 203 7MG N3 C4 sing N N 204 7MG CM7 HM71 sing N N 205 7MG CM7 HM72 sing N N 206 7MG CM7 HM73 sing N N 207 A OP3 P sing N N 208 A OP3 HOP3 sing N N 209 A P OP1 doub N N 210 A P OP2 sing N N 211 A P "O5'" sing N N 212 A OP2 HOP2 sing N N 213 A "O5'" "C5'" sing N N 214 A "C5'" "C4'" sing N N 215 A "C5'" "H5'" sing N N 216 A "C5'" "H5''" sing N N 217 A "C4'" "O4'" sing N N 218 A "C4'" "C3'" sing N N 219 A "C4'" "H4'" sing N N 220 A "O4'" "C1'" sing N N 221 A "C3'" "O3'" sing N N 222 A "C3'" "C2'" sing N N 223 A "C3'" "H3'" sing N N 224 A "O3'" "HO3'" sing N N 225 A "C2'" "O2'" sing N N 226 A "C2'" "C1'" sing N N 227 A "C2'" "H2'" sing N N 228 A "O2'" "HO2'" sing N N 229 A "C1'" N9 sing N N 230 A "C1'" "H1'" sing N N 231 A N9 C8 sing Y N 232 A N9 C4 sing Y N 233 A C8 N7 doub Y N 234 A C8 H8 sing N N 235 A N7 C5 sing Y N 236 A C5 C6 sing Y N 237 A C5 C4 doub Y N 238 A C6 N6 sing N N 239 A C6 N1 doub Y N 240 A N6 H61 sing N N 241 A N6 H62 sing N N 242 A N1 C2 sing Y N 243 A C2 N3 doub Y N 244 A C2 H2 sing N N 245 A N3 C4 sing Y N 246 C OP3 P sing N N 247 C OP3 HOP3 sing N N 248 C P OP1 doub N N 249 C P OP2 sing N N 250 C P "O5'" sing N N 251 C OP2 HOP2 sing N N 252 C "O5'" "C5'" sing N N 253 C "C5'" "C4'" sing N N 254 C "C5'" "H5'" sing N N 255 C "C5'" "H5''" sing N N 256 C "C4'" "O4'" sing N N 257 C "C4'" "C3'" sing N N 258 C "C4'" "H4'" sing N N 259 C "O4'" "C1'" sing N N 260 C "C3'" "O3'" sing N N 261 C "C3'" "C2'" sing N N 262 C "C3'" "H3'" sing N N 263 C "O3'" "HO3'" sing N N 264 C "C2'" "O2'" sing N N 265 C "C2'" "C1'" sing N N 266 C "C2'" "H2'" sing N N 267 C "O2'" "HO2'" sing N N 268 C "C1'" N1 sing N N 269 C "C1'" "H1'" sing N N 270 C N1 C2 sing N N 271 C N1 C6 sing N N 272 C C2 O2 doub N N 273 C C2 N3 sing N N 274 C N3 C4 doub N N 275 C C4 N4 sing N N 276 C C4 C5 sing N N 277 C N4 H41 sing N N 278 C N4 H42 sing N N 279 C C5 C6 doub N N 280 C C5 H5 sing N N 281 C C6 H6 sing N N 282 G OP3 P sing N N 283 G OP3 HOP3 sing N N 284 G P OP1 doub N N 285 G P OP2 sing N N 286 G P "O5'" sing N N 287 G OP2 HOP2 sing N N 288 G "O5'" "C5'" sing N N 289 G "C5'" "C4'" sing N N 290 G "C5'" "H5'" sing N N 291 G "C5'" "H5''" sing N N 292 G "C4'" "O4'" sing N N 293 G "C4'" "C3'" sing N N 294 G "C4'" "H4'" sing N N 295 G "O4'" "C1'" sing N N 296 G "C3'" "O3'" sing N N 297 G "C3'" "C2'" sing N N 298 G "C3'" "H3'" sing N N 299 G "O3'" "HO3'" sing N N 300 G "C2'" "O2'" sing N N 301 G "C2'" "C1'" sing N N 302 G "C2'" "H2'" sing N N 303 G "O2'" "HO2'" sing N N 304 G "C1'" N9 sing N N 305 G "C1'" "H1'" sing N N 306 G N9 C8 sing Y N 307 G N9 C4 sing Y N 308 G C8 N7 doub Y N 309 G C8 H8 sing N N 310 G N7 C5 sing Y N 311 G C5 C6 sing N N 312 G C5 C4 doub Y N 313 G C6 O6 doub N N 314 G C6 N1 sing N N 315 G N1 C2 sing N N 316 G N1 H1 sing N N 317 G C2 N2 sing N N 318 G C2 N3 doub N N 319 G N2 H21 sing N N 320 G N2 H22 sing N N 321 G N3 C4 sing N N 322 H2U P OP1 doub N N 323 H2U P OP2 sing N N 324 H2U P OP3 sing N N 325 H2U P "O5'" sing N N 326 H2U OP2 HOP2 sing N N 327 H2U OP3 HOP3 sing N N 328 H2U "O5'" "C5'" sing N N 329 H2U "C5'" "C4'" sing N N 330 H2U "C5'" "H5'" sing N N 331 H2U "C5'" "H5''" sing N N 332 H2U "C4'" "O4'" sing N N 333 H2U "C4'" "C3'" sing N N 334 H2U "C4'" "H4'" sing N N 335 H2U "O4'" "C1'" sing N N 336 H2U "C3'" "O3'" sing N N 337 H2U "C3'" "C2'" sing N N 338 H2U "C3'" "H3'" sing N N 339 H2U "O3'" "HO3'" sing N N 340 H2U "C1'" "C2'" sing N N 341 H2U "C1'" N1 sing N N 342 H2U "C1'" "H1'" sing N N 343 H2U "C2'" "O2'" sing N N 344 H2U "C2'" "H2'" sing N N 345 H2U "O2'" "HO2'" sing N N 346 H2U N1 C2 sing N N 347 H2U N1 C6 sing N N 348 H2U C2 O2 doub N N 349 H2U C2 N3 sing N N 350 H2U N3 C4 sing N N 351 H2U N3 HN3 sing N N 352 H2U C4 O4 doub N N 353 H2U C4 C5 sing N N 354 H2U C5 C6 sing N N 355 H2U C5 H51 sing N N 356 H2U C5 H52 sing N N 357 H2U C6 H61 sing N N 358 H2U C6 H62 sing N N 359 HOH O H1 sing N N 360 HOH O H2 sing N N 361 M2G P OP1 doub N N 362 M2G P OP2 sing N N 363 M2G P OP3 sing N N 364 M2G P "O5'" sing N N 365 M2G OP2 HOP2 sing N N 366 M2G OP3 HOP3 sing N N 367 M2G "O5'" "C5'" sing N N 368 M2G "C5'" "C4'" sing N N 369 M2G "C5'" "H5'" sing N N 370 M2G "C5'" "H5''" sing N N 371 M2G "C4'" "O4'" sing N N 372 M2G "C4'" "C3'" sing N N 373 M2G "C4'" "H4'" sing N N 374 M2G "O4'" "C1'" sing N N 375 M2G "C3'" "O3'" sing N N 376 M2G "C3'" "C2'" sing N N 377 M2G "C3'" "H3'" sing N N 378 M2G "O3'" "HO3'" sing N N 379 M2G "C2'" "O2'" sing N N 380 M2G "C2'" "C1'" sing N N 381 M2G "C2'" "H2'" sing N N 382 M2G "O2'" "HO2'" sing N N 383 M2G "C1'" N9 sing N N 384 M2G "C1'" "H1'" sing N N 385 M2G N9 C8 sing Y N 386 M2G N9 C4 sing Y N 387 M2G C8 N7 doub Y N 388 M2G C8 H8 sing N N 389 M2G N7 C5 sing Y N 390 M2G C5 C6 sing N N 391 M2G C5 C4 doub Y N 392 M2G C6 O6 doub N N 393 M2G C6 N1 sing N N 394 M2G N1 C2 sing N N 395 M2G N1 HN1 sing N N 396 M2G C2 N2 sing N N 397 M2G C2 N3 doub N N 398 M2G N2 CM1 sing N N 399 M2G N2 CM2 sing N N 400 M2G N3 C4 sing N N 401 M2G CM1 HM11 sing N N 402 M2G CM1 HM12 sing N N 403 M2G CM1 HM13 sing N N 404 M2G CM2 HM21 sing N N 405 M2G CM2 HM22 sing N N 406 M2G CM2 HM23 sing N N 407 OMC N1 C2 sing N N 408 OMC N1 C6 sing N N 409 OMC N1 "C1'" sing N N 410 OMC C2 N3 sing N N 411 OMC C2 O2 doub N N 412 OMC N3 C4 doub N N 413 OMC C4 C5 sing N N 414 OMC C4 N4 sing N N 415 OMC C5 C6 doub N N 416 OMC C5 H5 sing N N 417 OMC C6 H6 sing N N 418 OMC N4 HN41 sing N N 419 OMC N4 HN42 sing N N 420 OMC "C1'" "C2'" sing N N 421 OMC "C1'" "O4'" sing N N 422 OMC "C1'" "H1'" sing N N 423 OMC "C2'" "O2'" sing N N 424 OMC "C2'" "C3'" sing N N 425 OMC "C2'" "H2'" sing N N 426 OMC "O2'" CM2 sing N N 427 OMC CM2 HM21 sing N N 428 OMC CM2 HM22 sing N N 429 OMC CM2 HM23 sing N N 430 OMC "C3'" "C4'" sing N N 431 OMC "C3'" "O3'" sing N N 432 OMC "C3'" "H3'" sing N N 433 OMC "C4'" "O4'" sing N N 434 OMC "C4'" "C5'" sing N N 435 OMC "C4'" "H4'" sing N N 436 OMC "O3'" "HO3'" sing N N 437 OMC "C5'" "O5'" sing N N 438 OMC "C5'" "H5'" sing N N 439 OMC "C5'" "H5''" sing N N 440 OMC "O5'" P sing N N 441 OMC P OP1 doub N N 442 OMC P OP2 sing N N 443 OMC P OP3 sing N N 444 OMC OP2 HOP2 sing N N 445 OMC OP3 HOP3 sing N N 446 OMG P OP1 doub N N 447 OMG P OP2 sing N N 448 OMG P OP3 sing N N 449 OMG P "O5'" sing N N 450 OMG OP2 HOP2 sing N N 451 OMG OP3 HOP3 sing N N 452 OMG "O5'" "C5'" sing N N 453 OMG "C5'" "C4'" sing N N 454 OMG "C5'" "H5'" sing N N 455 OMG "C5'" "H5''" sing N N 456 OMG "C4'" "O4'" sing N N 457 OMG "C4'" "C3'" sing N N 458 OMG "C4'" "H4'" sing N N 459 OMG "O4'" "C1'" sing N N 460 OMG "C3'" "O3'" sing N N 461 OMG "C3'" "C2'" sing N N 462 OMG "C3'" "H3'" sing N N 463 OMG "O3'" "HO3'" sing N N 464 OMG "C2'" "O2'" sing N N 465 OMG "C2'" "C1'" sing N N 466 OMG "C2'" "H2'" sing N N 467 OMG "O2'" CM2 sing N N 468 OMG CM2 HM21 sing N N 469 OMG CM2 HM22 sing N N 470 OMG CM2 HM23 sing N N 471 OMG "C1'" N9 sing N N 472 OMG "C1'" "H1'" sing N N 473 OMG N9 C8 sing Y N 474 OMG N9 C4 sing Y N 475 OMG C8 N7 doub Y N 476 OMG C8 H8 sing N N 477 OMG N7 C5 sing Y N 478 OMG C5 C6 sing N N 479 OMG C5 C4 doub Y N 480 OMG C6 O6 doub N N 481 OMG C6 N1 sing N N 482 OMG N1 C2 sing N N 483 OMG N1 HN1 sing N N 484 OMG C2 N2 sing N N 485 OMG C2 N3 doub N N 486 OMG N2 HN21 sing N N 487 OMG N2 HN22 sing N N 488 OMG N3 C4 sing N N 489 PSU N1 C2 sing N N 490 PSU N1 C6 sing N N 491 PSU N1 HN1 sing N N 492 PSU C2 N3 sing N N 493 PSU C2 O2 doub N N 494 PSU N3 C4 sing N N 495 PSU N3 HN3 sing N N 496 PSU C4 C5 sing N N 497 PSU C4 O4 doub N N 498 PSU C5 C6 doub N N 499 PSU C5 "C1'" sing N N 500 PSU C6 H6 sing N N 501 PSU "C1'" "C2'" sing N N 502 PSU "C1'" "O4'" sing N N 503 PSU "C1'" "H1'" sing N N 504 PSU "C2'" "O2'" sing N N 505 PSU "C2'" "C3'" sing N N 506 PSU "C2'" "H2'" sing N N 507 PSU "O2'" "HO2'" sing N N 508 PSU "C3'" "C4'" sing N N 509 PSU "C3'" "O3'" sing N N 510 PSU "C3'" "H3'" sing N N 511 PSU "C4'" "O4'" sing N N 512 PSU "C4'" "C5'" sing N N 513 PSU "C4'" "H4'" sing N N 514 PSU "O3'" "HO3'" sing N N 515 PSU "C5'" "O5'" sing N N 516 PSU "C5'" "H5'" sing N N 517 PSU "C5'" "H5''" sing N N 518 PSU "O5'" P sing N N 519 PSU P OP1 doub N N 520 PSU P OP2 sing N N 521 PSU P OP3 sing N N 522 PSU OP2 HOP2 sing N N 523 PSU OP3 HOP3 sing N N 524 SPM N1 C2 sing N N 525 SPM N1 HN11 sing N N 526 SPM N1 HN12 sing N N 527 SPM C2 C3 sing N N 528 SPM C2 H21 sing N N 529 SPM C2 H22 sing N N 530 SPM C3 C4 sing N N 531 SPM C3 H31 sing N N 532 SPM C3 H32 sing N N 533 SPM C4 N5 sing N N 534 SPM C4 H41 sing N N 535 SPM C4 H42 sing N N 536 SPM N5 C6 sing N N 537 SPM N5 HN5 sing N N 538 SPM C6 C7 sing N N 539 SPM C6 H61 sing N N 540 SPM C6 H62 sing N N 541 SPM C7 C8 sing N N 542 SPM C7 H71 sing N N 543 SPM C7 H72 sing N N 544 SPM C8 C9 sing N N 545 SPM C8 H81 sing N N 546 SPM C8 H82 sing N N 547 SPM C9 N10 sing N N 548 SPM C9 H91 sing N N 549 SPM C9 H92 sing N N 550 SPM N10 C11 sing N N 551 SPM N10 HN0 sing N N 552 SPM C11 C12 sing N N 553 SPM C11 H111 sing N N 554 SPM C11 H112 sing N N 555 SPM C12 C13 sing N N 556 SPM C12 H121 sing N N 557 SPM C12 H122 sing N N 558 SPM C13 N14 sing N N 559 SPM C13 H131 sing N N 560 SPM C13 H132 sing N N 561 SPM N14 HN41 sing N N 562 SPM N14 HN42 sing N N 563 U OP3 P sing N N 564 U OP3 HOP3 sing N N 565 U P OP1 doub N N 566 U P OP2 sing N N 567 U P "O5'" sing N N 568 U OP2 HOP2 sing N N 569 U "O5'" "C5'" sing N N 570 U "C5'" "C4'" sing N N 571 U "C5'" "H5'" sing N N 572 U "C5'" "H5''" sing N N 573 U "C4'" "O4'" sing N N 574 U "C4'" "C3'" sing N N 575 U "C4'" "H4'" sing N N 576 U "O4'" "C1'" sing N N 577 U "C3'" "O3'" sing N N 578 U "C3'" "C2'" sing N N 579 U "C3'" "H3'" sing N N 580 U "O3'" "HO3'" sing N N 581 U "C2'" "O2'" sing N N 582 U "C2'" "C1'" sing N N 583 U "C2'" "H2'" sing N N 584 U "O2'" "HO2'" sing N N 585 U "C1'" N1 sing N N 586 U "C1'" "H1'" sing N N 587 U N1 C2 sing N N 588 U N1 C6 sing N N 589 U C2 O2 doub N N 590 U C2 N3 sing N N 591 U N3 C4 sing N N 592 U N3 H3 sing N N 593 U C4 O4 doub N N 594 U C4 C5 sing N N 595 U C5 C6 doub N N 596 U C5 H5 sing N N 597 U C6 H6 sing N N 598 YG N1 C2 sing Y N 599 YG N1 C6 sing N N 600 YG N1 C12 sing Y N 601 YG N2 C2 doub Y N 602 YG N2 C11 sing Y N 603 YG C2 N3 sing N N 604 YG N3 C3 sing N N 605 YG N3 C4 sing N N 606 YG C3 H31 sing N N 607 YG C3 H32 sing N N 608 YG C3 H33 sing N N 609 YG C4 C5 doub Y N 610 YG C4 N9 sing Y N 611 YG C5 C6 sing N N 612 YG C5 N7 sing Y N 613 YG C6 O6 doub N N 614 YG N7 C8 doub Y N 615 YG C8 N9 sing Y N 616 YG C8 H8 sing N N 617 YG N9 "C1'" sing N N 618 YG C10 C11 sing N N 619 YG C10 H101 sing N N 620 YG C10 H102 sing N N 621 YG C10 H103 sing N N 622 YG C11 C12 doub Y N 623 YG C12 C13 sing N N 624 YG C13 C14 sing N N 625 YG C13 H131 sing N N 626 YG C13 H132 sing N N 627 YG C14 C15 sing N N 628 YG C14 H141 sing N N 629 YG C14 H142 sing N N 630 YG C15 C16 sing N N 631 YG C15 N20 sing N N 632 YG C15 H15 sing N N 633 YG C16 O17 doub N N 634 YG C16 O18 sing N N 635 YG O18 C19 sing N N 636 YG C19 H191 sing N N 637 YG C19 H192 sing N N 638 YG C19 H193 sing N N 639 YG N20 C21 sing N N 640 YG N20 HN2 sing N N 641 YG C21 O22 doub N N 642 YG C21 O23 sing N N 643 YG O23 C24 sing N N 644 YG C24 H241 sing N N 645 YG C24 H242 sing N N 646 YG C24 H243 sing N N 647 YG "C1'" "C2'" sing N N 648 YG "C1'" "O4'" sing N N 649 YG "C1'" "H1'" sing N N 650 YG "C2'" "O2'" sing N N 651 YG "C2'" "C3'" sing N N 652 YG "C2'" "H2'" sing N N 653 YG "O2'" "HO2'" sing N N 654 YG "C3'" "O3'" sing N N 655 YG "C3'" "C4'" sing N N 656 YG "C3'" "H3'" sing N N 657 YG "O3'" "HO3'" sing N N 658 YG "C4'" "O4'" sing N N 659 YG "C4'" "C5'" sing N N 660 YG "C4'" "H4'" sing N N 661 YG "C5'" "O5'" sing N N 662 YG "C5'" "H5'" sing N N 663 YG "C5'" "H5''" sing N N 664 YG "O5'" P sing N N 665 YG P OP1 doub N N 666 YG P OP2 sing N N 667 YG P OP3 sing N N 668 YG OP2 HOP2 sing N N 669 YG OP3 HOP3 sing N N 670 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EVV 'double helix' 1EVV 'a-form double helix' 1EVV 'parallel strands' 1EVV 'hairpin loop' 1EVV 'mismatched base pair' 1EVV 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 72 1_555 -0.856 -0.624 -0.059 -0.778 -6.084 -1.897 1 A_G1:C72_A A 1 ? A 72 ? 19 1 1 A C 2 1_555 A G 71 1_555 -0.287 -0.203 0.369 -10.382 -5.721 1.989 2 A_C2:G71_A A 2 ? A 71 ? 19 1 1 A G 3 1_555 A C 70 1_555 -0.077 -0.135 0.435 0.678 -10.808 -2.562 3 A_G3:C70_A A 3 ? A 70 ? 19 1 1 A G 4 1_555 A U 69 1_555 -2.215 -0.467 0.649 10.047 -5.881 0.141 4 A_G4:U69_A A 4 ? A 69 ? 28 1 1 A A 5 1_555 A U 68 1_555 0.112 -0.203 0.239 6.380 -19.404 3.681 5 A_A5:U68_A A 5 ? A 68 ? 20 1 1 A U 6 1_555 A A 67 1_555 -0.484 -0.250 0.299 -9.165 -19.814 5.553 6 A_U6:A67_A A 6 ? A 67 ? 20 1 1 A U 7 1_555 A A 66 1_555 -0.058 -0.286 -0.062 -2.619 -3.685 1.441 7 A_U7:A66_A A 7 ? A 66 ? 20 1 1 A 5MC 49 1_555 A G 65 1_555 -0.102 -0.230 0.045 -0.835 -7.222 -2.194 8 A_5MC49:G65_A A 49 ? A 65 ? 19 1 1 A U 50 1_555 A A 64 1_555 -0.130 -0.247 0.109 -3.253 -5.803 -2.405 9 A_U50:A64_A A 50 ? A 64 ? 20 1 1 A G 51 1_555 A C 63 1_555 -0.304 -0.157 0.044 -4.614 -13.300 4.243 10 A_G51:C63_A A 51 ? A 63 ? 19 1 1 A U 52 1_555 A A 62 1_555 -0.557 -0.153 0.084 -1.354 -6.604 -0.441 11 A_U52:A62_A A 52 ? A 62 ? 20 1 1 A G 53 1_555 A C 61 1_555 -0.344 -0.153 -0.181 -10.759 -6.495 1.824 12 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A 5MU 54 1_555 A 1MA 58 1_555 4.325 -1.864 -0.048 0.310 2.629 -100.106 13 A_5MU54:1MA58_A A 54 ? A 58 ? 24 4 1 A PSU 55 1_555 A G 18 1_555 0.517 -5.728 0.294 16.780 1.567 -92.692 14 A_PSU55:G18_A A 55 ? A 18 ? ? 2 1 A A 38 1_555 A OMC 32 1_555 -6.405 -2.022 0.743 -3.864 1.184 -0.750 15 A_A38:OMC32_A A 38 ? A 32 ? ? ? 1 A PSU 39 1_555 A A 31 1_555 -2.076 -0.148 0.320 6.125 -15.101 -5.211 16 A_PSU39:A31_A A 39 ? A 31 ? 21 1 1 A 5MC 40 1_555 A G 30 1_555 -0.770 -0.215 -0.044 4.691 -14.351 -1.779 17 A_5MC40:G30_A A 40 ? A 30 ? 19 1 1 A U 41 1_555 A A 29 1_555 -0.062 0.058 0.352 -4.997 -8.759 12.047 18 A_U41:A29_A A 41 ? A 29 ? 20 1 1 A G 42 1_555 A C 28 1_555 -0.005 -0.353 0.471 -4.751 -9.368 -1.525 19 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A G 43 1_555 A C 27 1_555 -0.186 -0.321 0.237 -9.407 -19.973 -2.993 20 A_G43:C27_A A 43 ? A 27 ? 19 1 1 A A 44 1_555 A M2G 26 1_555 0.450 1.374 -0.386 -20.184 -36.279 -14.648 21 A_A44:M2G26_A A 44 ? A 26 ? 8 ? 1 A 2MG 10 1_555 A C 25 1_555 -0.211 -0.310 -0.046 -4.332 -7.901 1.097 22 A_2MG10:C25_A A 10 ? A 25 ? 19 1 1 A C 11 1_555 A G 24 1_555 0.218 -0.235 0.193 -6.717 -18.643 4.132 23 A_C11:G24_A A 11 ? A 24 ? 19 1 1 A U 12 1_555 A A 23 1_555 -0.042 -0.116 0.427 -9.471 -3.636 -2.716 24 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A C 13 1_555 A G 22 1_555 0.256 -0.102 -0.081 5.583 -2.141 1.510 25 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A A 14 1_555 A U 8 1_555 -4.121 -1.898 0.517 5.666 10.912 -101.223 26 A_A14:U8_A A 14 ? A 8 ? 24 4 1 A G 15 1_555 A C 48 1_555 0.125 3.914 0.101 1.825 0.420 152.066 27 A_G15:C48_A A 15 ? A 48 ? 22 2 1 A G 19 1_555 A C 56 1_555 -0.340 -0.005 0.028 -24.992 -25.375 2.475 28 A_G19:C56_A A 19 ? A 56 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 72 1_555 A C 2 1_555 A G 71 1_555 -0.675 -2.102 3.342 -5.597 9.233 42.259 -3.696 0.386 2.905 12.562 7.615 43.555 1 AA_G1C2:G71C72_AA A 1 ? A 72 ? A 2 ? A 71 ? 1 A C 2 1_555 A G 71 1_555 A G 3 1_555 A C 70 1_555 -0.086 -1.345 2.936 -0.674 2.480 29.475 -3.097 0.043 2.817 4.863 1.322 29.584 2 AA_C2G3:C70G71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A G 3 1_555 A C 70 1_555 A G 4 1_555 A U 69 1_555 0.228 -1.804 2.736 -4.899 8.534 24.050 -5.755 -1.506 1.911 19.469 11.176 25.958 3 AA_G3G4:U69C70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A G 4 1_555 A U 69 1_555 A A 5 1_555 A U 68 1_555 -0.220 -1.391 3.253 2.047 3.555 42.953 -2.232 0.496 3.121 4.841 -2.788 43.140 4 AA_G4A5:U68U69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A A 5 1_555 A U 68 1_555 A U 6 1_555 A A 67 1_555 0.460 -1.714 3.481 -0.284 8.458 28.412 -5.121 -0.959 2.858 16.767 0.563 29.621 5 AA_A5U6:A67U68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A U 6 1_555 A A 67 1_555 A U 7 1_555 A A 66 1_555 -0.186 -1.258 3.078 1.994 9.787 34.681 -3.268 0.552 2.623 16.011 -3.262 36.048 6 AA_U6U7:A66A67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A U 7 1_555 A A 66 1_555 A 5MC 49 1_555 A G 65 1_555 -0.461 -2.061 3.259 0.685 3.485 34.275 -4.003 0.881 3.032 5.893 -1.158 34.453 7 AA_U75MC49:G65A66_AA A 7 ? A 66 ? A 49 ? A 65 ? 1 A 5MC 49 1_555 A G 65 1_555 A U 50 1_555 A A 64 1_555 -0.921 -2.096 3.197 -1.479 7.698 29.017 -5.473 1.503 2.610 15.021 2.886 30.036 8 AA_5MC49U50:A64G65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A U 50 1_555 A A 64 1_555 A G 51 1_555 A C 63 1_555 0.267 -1.430 3.335 0.966 4.892 31.549 -3.476 -0.313 3.091 8.927 -1.762 31.931 9 AA_U50G51:C63A64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A G 51 1_555 A C 63 1_555 A U 52 1_555 A A 62 1_555 0.264 -1.309 3.192 -0.992 3.380 28.739 -3.329 -0.737 3.011 6.777 1.990 28.950 10 AA_G51U52:A62C63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A U 52 1_555 A A 62 1_555 A G 53 1_555 A C 61 1_555 0.979 -1.975 3.373 2.047 7.784 33.723 -4.484 -1.337 2.912 13.185 -3.468 34.643 11 AA_U52G53:C61A62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 53 1_555 A C 61 1_555 A 5MU 54 1_555 A 1MA 58 1_555 -2.067 -2.577 3.179 0.420 -3.959 91.352 -1.724 1.452 3.257 -2.766 -0.294 91.419 12 AA_G535MU54:1MA58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A 5MU 54 1_555 A 1MA 58 1_555 A PSU 55 1_555 A G 18 1_555 2.144 -2.392 3.334 6.695 4.161 43.579 -3.577 -2.201 3.381 5.550 -8.931 44.252 13 AA_5MU54PSU55:G181MA58_AA A 54 ? A 58 ? A 55 ? A 18 ? 1 A A 38 1_555 A OMC 32 1_555 A PSU 39 1_555 A A 31 1_555 -0.236 -1.364 3.073 -7.010 10.920 47.840 -2.361 -0.187 2.726 13.185 8.464 49.468 14 AA_A38PSU39:A31OMC32_AA A 38 ? A 32 ? A 39 ? A 31 ? 1 A PSU 39 1_555 A A 31 1_555 A 5MC 40 1_555 A G 30 1_555 0.005 -1.414 3.076 -0.499 7.122 38.748 -2.861 -0.062 2.783 10.625 0.745 39.376 15 AA_PSU395MC40:G30A31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A 5MC 40 1_555 A G 30 1_555 A U 41 1_555 A A 29 1_555 0.776 -1.659 3.603 -2.077 4.907 41.013 -2.911 -1.337 3.350 6.968 2.949 41.343 16 AA_5MC40U41:A29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A U 41 1_555 A A 29 1_555 A G 42 1_555 A C 28 1_555 -0.302 -1.779 3.023 -0.136 7.760 26.076 -5.437 0.613 2.405 16.732 0.294 27.187 17 AA_U41G42:C28A29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 42 1_555 A C 28 1_555 A G 43 1_555 A C 27 1_555 -0.082 -1.515 3.277 1.454 5.735 36.174 -3.171 0.323 3.005 9.161 -2.322 36.639 18 AA_G42G43:C27C28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A G 43 1_555 A C 27 1_555 A A 44 1_555 A M2G 26 1_555 -0.675 -1.092 3.412 5.653 6.026 38.404 -2.347 1.682 3.087 9.034 -8.474 39.250 19 AA_G43A44:M2G26C27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A A 44 1_555 A M2G 26 1_555 A 2MG 10 1_555 A C 25 1_555 -2.885 -2.650 3.379 14.547 16.128 58.780 -3.185 3.351 1.967 15.854 -14.300 62.326 20 AA_A442MG10:C25M2G26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A 2MG 10 1_555 A C 25 1_555 A C 11 1_555 A G 24 1_555 -0.954 -1.611 3.145 -2.754 4.622 38.110 -2.987 1.125 2.996 7.035 4.192 38.474 21 AA_2MG10C11:G24C25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A C 11 1_555 A G 24 1_555 A U 12 1_555 A A 23 1_555 -0.281 -1.204 3.261 -1.155 7.295 32.327 -3.289 0.306 2.934 12.892 2.041 33.138 22 AA_C11U12:A23G24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 12 1_555 A A 23 1_555 A C 13 1_555 A G 22 1_555 1.734 -2.071 2.848 5.682 1.040 27.192 -4.542 -2.364 3.060 2.180 -11.915 27.788 23 AA_U12C13:G22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 13 1_555 A G 22 1_555 A A 14 1_555 A U 8 1_555 -2.385 -0.296 3.280 -0.326 -5.144 57.862 -0.030 2.439 3.305 -5.305 0.336 58.071 24 AA_C13A14:U8G22_AA A 13 ? A 22 ? A 14 ? A 8 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 48 1_555 2.419 -3.447 3.324 0.966 6.987 -63.638 2.933 2.327 3.612 -6.605 0.913 -63.987 25 AA_A14G15:C48U8_AA A 14 ? A 8 ? A 15 ? A 48 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 SPERMINE SPM 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1TRA _pdbx_initial_refinement_model.details 'PDB ENTRY 1TRA' #