HEADER CHAPERONE 03-MAY-00 1EXK TITLE SOLUTION STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF THE ESCHERICHIA COLI TITLE 2 CHAPERONE PROTEIN DNAJ. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 131-209; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET24A; SOURCE 7 OTHER_DETAILS: SYNTHETIC GENE BASED ON E. COLI DNAJ CRD SEQUENCE KEYWDS EXTENDED BETA-HAIRPIN, CXXCXGXG, ZINC-BINDING MOTIF, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.MARTINEZ-YAMOUT,G.B.LEGGE,O.ZHANG,P.E.WRIGHT,H.J.DYSON REVDAT 4 22-MAY-24 1EXK 1 REMARK REVDAT 3 16-FEB-22 1EXK 1 REMARK LINK REVDAT 2 24-FEB-09 1EXK 1 VERSN REVDAT 1 26-JUL-00 1EXK 0 JRNL AUTH M.MARTINEZ-YAMOUT,G.B.LEGGE,O.ZHANG,P.E.WRIGHT,H.J.DYSON JRNL TITL SOLUTION STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF THE JRNL TITL 2 ESCHERICHIA COLI CHAPERONE PROTEIN DNAJ. JRNL REF J.MOL.BIOL. V. 300 805 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10891270 JRNL DOI 10.1006/JMBI.2000.3923 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, AMBER 6.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), CASE (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1361 UNIQUE REMARK 3 NOE-BASED DISTANCE RESTRAINTS AND 99 TORSION ANGLE RESTAINTS AND REMARK 3 24 STEREO ASSIGNMENTS. REMARK 4 REMARK 4 1EXK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1000010997. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 50 MM; 50 MM REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 600 UM DNAJ CRD U-15N,13C; 20 MM REMARK 210 TRIS-D11 PH 6.8; 300 UM ZNCL2; REMARK 210 50 MM NACL; 2 MM DTT; 0.02% NAN3; REMARK 210 600 UM DNAJ CRD U-15N; 20 MM REMARK 210 TRIS-D11 PH 6.8; 300 UM ZNCL2; REMARK 210 50 MM NACL; REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 13C/15N CN- REMARK 210 NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AMX; DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 4.1.2, SANE 1.0, DYANA REMARK 210 1.5, SPIRIT 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS FOLLOWED REMARK 210 BY SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 112 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 19 REMARK 210 REMARK 210 REMARK: THE SEQUENCE-SPECIFIC ASSIGNMENTS WERE COMPLETED USING REMARK 210 STANDARD DOUBLE AND TRIPLE RESONANCE NMR EXPERIMENTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 7 55.36 -69.83 REMARK 500 1 SER A 20 -75.22 -80.05 REMARK 500 1 THR A 26 70.42 -68.56 REMARK 500 1 ARG A 43 55.94 -69.44 REMARK 500 2 THR A 3 -166.64 -166.83 REMARK 500 2 LYS A 4 -159.16 -167.92 REMARK 500 2 PRO A 9 91.08 -64.11 REMARK 500 2 ASP A 65 77.05 -109.64 REMARK 500 2 CYS A 67 94.89 -69.99 REMARK 500 3 ARG A 7 36.56 -98.36 REMARK 500 3 PRO A 9 74.76 -66.38 REMARK 500 3 PRO A 24 132.08 -39.13 REMARK 500 3 ARG A 43 41.34 -144.28 REMARK 500 3 GLN A 44 -163.69 -166.63 REMARK 500 3 PHE A 46 -60.74 -158.07 REMARK 500 3 ILE A 63 73.74 -108.62 REMARK 500 3 CYS A 67 91.65 -68.55 REMARK 500 3 ARG A 78 49.32 -75.56 REMARK 500 4 PRO A 9 103.18 -45.85 REMARK 500 4 SER A 20 -74.51 -78.00 REMARK 500 4 ARG A 43 60.69 -69.87 REMARK 500 4 GLN A 44 48.29 -77.36 REMARK 500 4 PHE A 46 -72.66 -102.35 REMARK 500 5 PRO A 24 126.73 -22.27 REMARK 500 5 HIS A 35 47.96 39.78 REMARK 500 5 ARG A 43 65.17 -62.40 REMARK 500 5 ASP A 65 68.30 -111.62 REMARK 500 6 THR A 10 54.62 -142.41 REMARK 500 6 ARG A 43 62.48 -66.21 REMARK 500 6 PHE A 46 -72.51 -98.23 REMARK 500 6 ASP A 65 79.91 -107.98 REMARK 500 6 CYS A 67 87.13 -69.32 REMARK 500 6 ARG A 78 70.84 -69.42 REMARK 500 7 VAL A 2 71.00 -54.52 REMARK 500 7 THR A 3 -78.57 -145.55 REMARK 500 7 LYS A 4 -56.36 -141.22 REMARK 500 7 ILE A 6 63.16 -69.12 REMARK 500 7 THR A 10 59.82 -59.73 REMARK 500 7 PRO A 24 121.82 -28.53 REMARK 500 7 PRO A 28 -175.97 -68.31 REMARK 500 7 ARG A 43 64.41 -68.68 REMARK 500 7 PHE A 46 -65.94 -109.68 REMARK 500 7 ASP A 65 76.79 -109.62 REMARK 500 8 PRO A 9 73.26 -68.32 REMARK 500 8 PRO A 24 122.98 -39.99 REMARK 500 8 PHE A 46 -35.84 -146.72 REMARK 500 8 CYS A 67 94.63 -69.65 REMARK 500 8 ARG A 78 76.13 -68.98 REMARK 500 9 ILE A 6 66.11 -67.49 REMARK 500 9 LYS A 23 154.01 -49.34 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 7 0.07 SIDE CHAIN REMARK 500 3 ARG A 59 0.18 SIDE CHAIN REMARK 500 5 ARG A 59 0.16 SIDE CHAIN REMARK 500 7 ARG A 59 0.08 SIDE CHAIN REMARK 500 8 PHE A 47 0.08 SIDE CHAIN REMARK 500 8 ARG A 59 0.13 SIDE CHAIN REMARK 500 8 ARG A 75 0.12 SIDE CHAIN REMARK 500 8 ARG A 78 0.15 SIDE CHAIN REMARK 500 10 ARG A 59 0.08 SIDE CHAIN REMARK 500 12 ARG A 59 0.10 SIDE CHAIN REMARK 500 12 ARG A 75 0.14 SIDE CHAIN REMARK 500 17 ARG A 59 0.13 SIDE CHAIN REMARK 500 17 ARG A 75 0.09 SIDE CHAIN REMARK 500 20 ARG A 75 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 80 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 14 SG REMARK 620 2 CYS A 17 SG 108.8 REMARK 620 3 CYS A 67 SG 109.8 112.9 REMARK 620 4 CYS A 70 SG 109.2 107.4 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 81 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 CYS A 34 SG 109.9 REMARK 620 3 CYS A 53 SG 109.8 110.4 REMARK 620 4 CYS A 56 SG 109.2 108.6 108.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 80 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 81 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4677 RELATED DB: BMRB REMARK 900 DNAJ CRD SEQUENCE-SPECIFIC ASSIGNMENTS DBREF 1EXK A 1 79 UNP P08622 DNAJ_ECOLI 131 209 SEQRES 1 A 79 GLY VAL THR LYS GLU ILE ARG ILE PRO THR LEU GLU GLU SEQRES 2 A 79 CYS ASP VAL CYS HIS GLY SER GLY ALA LYS PRO GLY THR SEQRES 3 A 79 GLN PRO GLN THR CYS PRO THR CYS HIS GLY SER GLY GLN SEQRES 4 A 79 VAL GLN MET ARG GLN GLY PHE PHE ALA VAL GLN GLN THR SEQRES 5 A 79 CYS PRO HIS CYS GLN GLY ARG GLY THR LEU ILE LYS ASP SEQRES 6 A 79 PRO CYS ASN LYS CYS HIS GLY HIS GLY ARG VAL GLU ARG SEQRES 7 A 79 SER HET ZN A 80 1 HET ZN A 81 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 ASP A 15 HIS A 18 5 4 HELIX 2 2 CYS A 67 HIS A 71 5 5 SHEET 1 A 2 LEU A 11 GLU A 13 0 SHEET 2 A 2 ARG A 75 GLU A 77 -1 O VAL A 76 N GLU A 12 SHEET 1 B 2 GLN A 29 THR A 30 0 SHEET 2 B 2 THR A 61 LEU A 62 -1 N LEU A 62 O GLN A 29 SHEET 1 C 2 GLN A 39 GLN A 44 0 SHEET 2 C 2 PHE A 47 THR A 52 -1 N PHE A 47 O GLN A 44 LINK SG CYS A 14 ZN ZN A 80 1555 1555 2.29 LINK SG CYS A 17 ZN ZN A 80 1555 1555 2.30 LINK SG CYS A 31 ZN ZN A 81 1555 1555 2.29 LINK SG CYS A 34 ZN ZN A 81 1555 1555 2.30 LINK SG CYS A 53 ZN ZN A 81 1555 1555 2.29 LINK SG CYS A 56 ZN ZN A 81 1555 1555 2.29 LINK SG CYS A 67 ZN ZN A 80 1555 1555 2.30 LINK SG CYS A 70 ZN ZN A 80 1555 1555 2.29 SITE 1 AC1 4 CYS A 14 CYS A 17 CYS A 67 CYS A 70 SITE 1 AC2 4 CYS A 31 CYS A 34 CYS A 53 CYS A 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1