HEADER SUGAR BINDING PROTEIN 11-MAY-00 1EZP TITLE GLOBAL FOLD OF MALTODEXTRIN BINDING PROTEIN COMPLEXED WITH BETA- TITLE 2 CYCLODEXTRIN USING PEPTIDE ORIENTATIONS FROM DIPOLAR COUPLINGS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MALTODEXTRIN BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBR322 KEYWDS RESIDUAL DIPLAR COUPLINGS, DEUTERATION, METHYL LABELING, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR G.A.MUELLER,W.Y.CHOY,D.YANG,J.D.FORMAN-KAY,R.A.VENTERS,L.E.KAY REVDAT 5 22-MAY-24 1EZP 1 REMARK REVDAT 4 03-NOV-21 1EZP 1 REMARK SEQADV REVDAT 3 24-FEB-09 1EZP 1 VERSN REVDAT 2 01-APR-03 1EZP 1 JRNL REVDAT 1 08-MAY-01 1EZP 0 JRNL AUTH G.A.MUELLER,W.Y.CHOY,D.YANG,J.D.FORMAN-KAY,R.A.VENTERS, JRNL AUTH 2 L.E.KAY JRNL TITL GLOBAL FOLDS OF PROTEINS WITH LOW DENSITIES OF NOES USING JRNL TITL 2 RESIDUAL DIPOLAR COUPLINGS: APPLICATION TO THE 370-RESIDUE JRNL TITL 3 MALTODEXTRIN-BINDING PROTEIN. JRNL REF J.MOL.BIOL. V. 300 197 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10864509 JRNL DOI 10.1006/JMBI.2000.3842 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.7, CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EZP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1000011065. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 310 REMARK 210 PH : 7.2; 7.2 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4 MM MALTODEXTRIN BINDING REMARK 210 PROTEIN U-15N,13C,2H, WITH 1H REMARK 210 AMIDE AND METHYL ON VAL, LEU, REMARK 210 AND ILE(DELTA1) 2MM BETA- REMARK 210 CYCLODEXTRIN, 20 MM SODIUM REMARK 210 PHOSPHATE PH 7.2, 3UM NAN3, REMARK 210 100UM EDTA.; 1.4 MM MALTODEXTRIN REMARK 210 BINDING PROTEIN U-15N,13C,2H, REMARK 210 WITH 1H AMIDE AND METHYL ON VAL, REMARK 210 LEU, AND ILE(DELTA1) 2MM BETA- REMARK 210 CYCLODEXTRIN, 20 MM SODIUM REMARK 210 PHOSPHATE PH 7.2, 3UM NAN3, REMARK 210 100UM EDTA. ~19MG/ML PF1 REMARK 210 BACTERIOPHAGE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_13C/15N-SEPARATED_NOESY; REMARK 210 4D_15N-SEPERATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY; (HM)CMCB(CMHM)- REMARK 210 NOESY; TROSY-BASED HNCO FOR REMARK 210 DIPOLAR COUPLINGS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 3.0, CNS 0.5 REMARK 210 METHOD USED : SIMULATED ANNEALING FROM REMARK 210 EXTENDED COORDINATES TORSION REMARK 210 ANGLE DYNAMICS AND FINISH WITH REMARK 210 CARTESIAN DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 243 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: TROSY BASED HNCO SEQUENCES: J.B.NMR 14:333-343(1999) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 227 HE1 TRP A 232 0.98 REMARK 500 HH TYR A 171 HA2 GLY A 174 1.26 REMARK 500 HD13 LEU A 151 HB THR A 208 1.27 REMARK 500 HD2 PRO A 125 HG2 GLU A 131 1.27 REMARK 500 HD21 ASN A 349 HG3 GLN A 355 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 15 -92.84 72.41 REMARK 500 1 THR A 31 35.82 158.08 REMARK 500 1 ASP A 41 -51.01 -166.70 REMARK 500 1 ASP A 55 98.82 60.37 REMARK 500 1 PRO A 57 -172.31 -61.06 REMARK 500 1 ASP A 58 36.37 -155.88 REMARK 500 1 ALA A 63 163.93 -50.00 REMARK 500 1 LEU A 75 81.08 -165.44 REMARK 500 1 ASP A 82 -153.05 -116.76 REMARK 500 1 LYS A 88 72.67 168.93 REMARK 500 1 VAL A 97 41.27 -95.03 REMARK 500 1 LEU A 103 78.81 -104.33 REMARK 500 1 ILE A 104 44.80 -101.47 REMARK 500 1 ALA A 105 142.31 177.12 REMARK 500 1 ILE A 108 38.92 -146.73 REMARK 500 1 ALA A 109 123.17 179.44 REMARK 500 1 ALA A 112 -177.35 -171.89 REMARK 500 1 LYS A 119 -59.30 -8.99 REMARK 500 1 ASP A 120 33.34 -170.13 REMARK 500 1 LEU A 122 74.89 -159.06 REMARK 500 1 ASN A 150 -176.52 -58.19 REMARK 500 1 LEU A 151 -23.45 -147.26 REMARK 500 1 PRO A 154 40.89 -79.22 REMARK 500 1 PHE A 156 -56.34 -121.61 REMARK 500 1 ALA A 163 23.54 -75.31 REMARK 500 1 ALA A 168 -63.95 -101.87 REMARK 500 1 ASN A 173 -71.09 66.66 REMARK 500 1 ASP A 177 -78.49 -80.77 REMARK 500 1 ILE A 178 -51.80 -178.91 REMARK 500 1 LYS A 179 33.17 -142.72 REMARK 500 1 LYS A 202 -69.94 -108.85 REMARK 500 1 ASN A 205 -19.68 -170.85 REMARK 500 1 ALA A 206 75.46 62.61 REMARK 500 1 ASP A 209 -169.42 -109.07 REMARK 500 1 GLU A 221 38.51 -91.73 REMARK 500 1 ALA A 223 38.23 -70.38 REMARK 500 1 TRP A 230 54.55 -115.28 REMARK 500 1 ALA A 231 24.82 -160.79 REMARK 500 1 ASN A 234 114.28 60.99 REMARK 500 1 ILE A 235 -76.70 -62.53 REMARK 500 1 ASP A 236 122.88 60.41 REMARK 500 1 PRO A 248 -153.95 -79.89 REMARK 500 1 LYS A 251 -11.59 67.37 REMARK 500 1 PRO A 254 -178.72 -67.71 REMARK 500 1 PRO A 257 -157.35 -93.29 REMARK 500 1 ALA A 268 33.42 -69.64 REMARK 500 1 ALA A 269 22.22 -145.15 REMARK 500 1 ASN A 272 98.83 60.47 REMARK 500 1 TYR A 283 -76.52 -85.18 REMARK 500 1 LEU A 284 46.66 -102.73 REMARK 500 REMARK 500 THIS ENTRY HAS 520 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EZO RELATED DB: PDB REMARK 900 1EZO IS THE NMR ENSEMBLE CALCULATED WITHOUT THE DIPOLAR COUPLING REMARK 900 RESTRAINTS DEVELOPED AS DESCRIBED IN THE CITATION DBREF 1EZP A 1 370 UNP P02928 MALE_ECOLI 27 396 SEQADV 1EZP THR A 2 UNP P02928 ILE 28 ENGINEERED MUTATION SEQRES 1 A 370 LYS THR GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 A 370 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 A 370 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 A 370 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 A 370 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 A 370 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 A 370 ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 A 370 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 A 370 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 A 370 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 A 370 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 A 370 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 A 370 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 A 370 LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 A 370 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 A 370 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 A 370 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 A 370 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 A 370 ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 A 370 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 A 370 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 A 370 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 A 370 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 A 370 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 A 370 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 A 370 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 A 370 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 A 370 SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP ALA SEQRES 29 A 370 GLN THR ARG ILE THR LYS HELIX 1 1 GLY A 16 LYS A 29 1 14 HELIX 2 2 LYS A 42 ALA A 52 1 11 HELIX 3 3 ASP A 82 LEU A 89 1 8 HELIX 4 4 TYR A 90 ASP A 95 1 6 HELIX 5 5 GLU A 130 ALA A 141 1 12 HELIX 6 6 PHE A 156 ALA A 162 1 7 HELIX 7 7 ALA A 163 GLY A 165 5 3 HELIX 8 8 ASN A 185 HIS A 203 1 19 HELIX 9 9 ASP A 209 GLY A 220 1 12 HELIX 10 10 ASN A 272 LEU A 284 1 13 HELIX 11 11 GLY A 289 ASP A 296 1 8 HELIX 12 12 LEU A 304 LEU A 311 1 8 HELIX 13 13 ASP A 314 LYS A 326 1 13 HELIX 14 14 PRO A 334 ALA A 338 5 5 HELIX 15 15 PHE A 339 VAL A 347 1 9 HELIX 16 16 VAL A 347 GLY A 353 1 7 HELIX 17 17 THR A 356 LYS A 370 1 15 SHEET 1 A 5 TYR A 106 GLU A 111 0 SHEET 2 A 5 PHE A 258 GLY A 265 -1 O GLY A 260 N GLU A 111 SHEET 3 A 5 ILE A 59 ALA A 63 -1 O ILE A 60 N GLY A 265 SHEET 4 A 5 LYS A 6 ILE A 11 1 O VAL A 8 N ILE A 59 SHEET 5 A 5 LYS A 34 GLU A 38 1 O LYS A 34 N LEU A 7 SHEET 1 B 3 TYR A 106 GLU A 111 0 SHEET 2 B 3 PHE A 258 GLY A 265 -1 O GLY A 260 N GLU A 111 SHEET 3 B 3 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 C 3 ILE A 226 ASN A 227 0 SHEET 2 C 3 SER A 114 TYR A 117 -1 N SER A 114 O ASN A 227 SHEET 3 C 3 GLY A 243 THR A 245 -1 O GLY A 243 N TYR A 117 SHEET 1 D 2 TYR A 171 GLU A 172 0 SHEET 2 D 2 LYS A 175 TYR A 176 -1 O LYS A 175 N GLU A 172 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1