data_1F08 # _entry.id 1F08 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1F08 pdb_00001f08 10.2210/pdb1f08/pdb RCSB RCSB011084 ? ? WWPDB D_1000011084 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-05-16 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1F08 _pdbx_database_status.recvd_initial_deposition_date 2000-05-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Enemark, E.J.' 1 'Chen, G.' 2 'Vaughn, D.E.' 3 'Stenlund, A.' 4 'Joshua-Tor, L.' 5 # _citation.id primary _citation.title 'Crystal structure of the DNA binding domain of the replication initiation protein E1 from papillomavirus.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 6 _citation.page_first 149 _citation.page_last 158 _citation.year 2000 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10949036 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(00)00016-2' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Enemark, E.J.' 1 ? primary 'Chen, G.' 2 ? primary 'Vaughn, D.E.' 3 ? primary 'Stenlund, A.' 4 ? primary 'Joshua-Tor, L.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'REPLICATION PROTEIN E1' 16877.770 2 ? ? 'DNA-BINDING DOMAIN' ? 2 non-polymer syn 'BROMIDE ION' 79.904 14 ? ? ? ? 3 water nat water 18.015 100 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSRATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLI CFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSRATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQKRSHEGGTCAVYLI CFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSSLSPATLKHGALPEWIRAQTTLN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BROMIDE ION' BR 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ARG n 1 4 ALA n 1 5 THR n 1 6 VAL n 1 7 PHE n 1 8 LYS n 1 9 LEU n 1 10 GLY n 1 11 LEU n 1 12 PHE n 1 13 LYS n 1 14 SER n 1 15 LEU n 1 16 PHE n 1 17 LEU n 1 18 CYS n 1 19 SER n 1 20 PHE n 1 21 HIS n 1 22 ASP n 1 23 ILE n 1 24 THR n 1 25 ARG n 1 26 LEU n 1 27 PHE n 1 28 LYS n 1 29 ASN n 1 30 ASP n 1 31 LYS n 1 32 THR n 1 33 THR n 1 34 ASN n 1 35 GLN n 1 36 GLN n 1 37 TRP n 1 38 VAL n 1 39 LEU n 1 40 ALA n 1 41 VAL n 1 42 PHE n 1 43 GLY n 1 44 LEU n 1 45 ALA n 1 46 GLU n 1 47 VAL n 1 48 PHE n 1 49 PHE n 1 50 GLU n 1 51 ALA n 1 52 SER n 1 53 PHE n 1 54 GLU n 1 55 LEU n 1 56 LEU n 1 57 LYS n 1 58 LYS n 1 59 GLN n 1 60 CYS n 1 61 SER n 1 62 PHE n 1 63 LEU n 1 64 GLN n 1 65 MET n 1 66 GLN n 1 67 LYS n 1 68 ARG n 1 69 SER n 1 70 HIS n 1 71 GLU n 1 72 GLY n 1 73 GLY n 1 74 THR n 1 75 CYS n 1 76 ALA n 1 77 VAL n 1 78 TYR n 1 79 LEU n 1 80 ILE n 1 81 CYS n 1 82 PHE n 1 83 ASN n 1 84 THR n 1 85 ALA n 1 86 LYS n 1 87 SER n 1 88 ARG n 1 89 GLU n 1 90 THR n 1 91 VAL n 1 92 ARG n 1 93 ASN n 1 94 LEU n 1 95 MET n 1 96 ALA n 1 97 ASN n 1 98 MET n 1 99 LEU n 1 100 ASN n 1 101 VAL n 1 102 ARG n 1 103 GLU n 1 104 GLU n 1 105 CYS n 1 106 LEU n 1 107 MET n 1 108 LEU n 1 109 GLN n 1 110 PRO n 1 111 PRO n 1 112 LYS n 1 113 ILE n 1 114 ARG n 1 115 GLY n 1 116 LEU n 1 117 SER n 1 118 ALA n 1 119 ALA n 1 120 LEU n 1 121 PHE n 1 122 TRP n 1 123 PHE n 1 124 LYS n 1 125 SER n 1 126 SER n 1 127 LEU n 1 128 SER n 1 129 PRO n 1 130 ALA n 1 131 THR n 1 132 LEU n 1 133 LYS n 1 134 HIS n 1 135 GLY n 1 136 ALA n 1 137 LEU n 1 138 PRO n 1 139 GLU n 1 140 TRP n 1 141 ILE n 1 142 ARG n 1 143 ALA n 1 144 GLN n 1 145 THR n 1 146 THR n 1 147 LEU n 1 148 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bovine papillomavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10571 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PET11CGST _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 156 156 GLY GLY A . n A 1 2 SER 2 157 157 SER SER A . n A 1 3 ARG 3 158 158 ARG ARG A . n A 1 4 ALA 4 159 159 ALA ALA A . n A 1 5 THR 5 160 160 THR THR A . n A 1 6 VAL 6 161 161 VAL VAL A . n A 1 7 PHE 7 162 162 PHE PHE A . n A 1 8 LYS 8 163 163 LYS LYS A . n A 1 9 LEU 9 164 164 LEU LEU A . n A 1 10 GLY 10 165 165 GLY GLY A . n A 1 11 LEU 11 166 166 LEU LEU A . n A 1 12 PHE 12 167 167 PHE PHE A . n A 1 13 LYS 13 168 168 LYS LYS A . n A 1 14 SER 14 169 169 SER SER A . n A 1 15 LEU 15 170 170 LEU LEU A . n A 1 16 PHE 16 171 171 PHE PHE A . n A 1 17 LEU 17 172 172 LEU LEU A . n A 1 18 CYS 18 173 173 CYS CYS A . n A 1 19 SER 19 174 174 SER SER A . n A 1 20 PHE 20 175 175 PHE PHE A . n A 1 21 HIS 21 176 176 HIS HIS A . n A 1 22 ASP 22 177 177 ASP ASP A . n A 1 23 ILE 23 178 178 ILE ILE A . n A 1 24 THR 24 179 179 THR THR A . n A 1 25 ARG 25 180 180 ARG ARG A . n A 1 26 LEU 26 181 181 LEU LEU A . n A 1 27 PHE 27 182 182 PHE PHE A . n A 1 28 LYS 28 183 183 LYS LYS A . n A 1 29 ASN 29 184 184 ASN ASN A . n A 1 30 ASP 30 185 185 ASP ASP A . n A 1 31 LYS 31 186 186 LYS LYS A . n A 1 32 THR 32 187 187 THR THR A . n A 1 33 THR 33 188 188 THR THR A . n A 1 34 ASN 34 189 189 ASN ASN A . n A 1 35 GLN 35 190 190 GLN GLN A . n A 1 36 GLN 36 191 191 GLN GLN A . n A 1 37 TRP 37 192 192 TRP TRP A . n A 1 38 VAL 38 193 193 VAL VAL A . n A 1 39 LEU 39 194 194 LEU LEU A . n A 1 40 ALA 40 195 195 ALA ALA A . n A 1 41 VAL 41 196 196 VAL VAL A . n A 1 42 PHE 42 197 197 PHE PHE A . n A 1 43 GLY 43 198 198 GLY GLY A . n A 1 44 LEU 44 199 199 LEU LEU A . n A 1 45 ALA 45 200 200 ALA ALA A . n A 1 46 GLU 46 201 201 GLU GLU A . n A 1 47 VAL 47 202 202 VAL VAL A . n A 1 48 PHE 48 203 203 PHE PHE A . n A 1 49 PHE 49 204 204 PHE PHE A . n A 1 50 GLU 50 205 205 GLU GLU A . n A 1 51 ALA 51 206 206 ALA ALA A . n A 1 52 SER 52 207 207 SER SER A . n A 1 53 PHE 53 208 208 PHE PHE A . n A 1 54 GLU 54 209 209 GLU GLU A . n A 1 55 LEU 55 210 210 LEU LEU A . n A 1 56 LEU 56 211 211 LEU LEU A . n A 1 57 LYS 57 212 212 LYS LYS A . n A 1 58 LYS 58 213 213 LYS LYS A . n A 1 59 GLN 59 214 214 GLN GLN A . n A 1 60 CYS 60 215 215 CYS CYS A . n A 1 61 SER 61 216 216 SER SER A . n A 1 62 PHE 62 217 217 PHE PHE A . n A 1 63 LEU 63 218 218 LEU LEU A . n A 1 64 GLN 64 219 219 GLN GLN A . n A 1 65 MET 65 220 220 MET MET A . n A 1 66 GLN 66 221 221 GLN GLN A . n A 1 67 LYS 67 222 222 LYS LYS A . n A 1 68 ARG 68 223 223 ARG ARG A . n A 1 69 SER 69 224 224 SER SER A . n A 1 70 HIS 70 225 225 HIS HIS A . n A 1 71 GLU 71 226 226 GLU GLU A . n A 1 72 GLY 72 227 227 GLY GLY A . n A 1 73 GLY 73 228 228 GLY GLY A . n A 1 74 THR 74 229 229 THR THR A . n A 1 75 CYS 75 230 230 CYS CYS A . n A 1 76 ALA 76 231 231 ALA ALA A . n A 1 77 VAL 77 232 232 VAL VAL A . n A 1 78 TYR 78 233 233 TYR TYR A . n A 1 79 LEU 79 234 234 LEU LEU A . n A 1 80 ILE 80 235 235 ILE ILE A . n A 1 81 CYS 81 236 236 CYS CYS A . n A 1 82 PHE 82 237 237 PHE PHE A . n A 1 83 ASN 83 238 238 ASN ASN A . n A 1 84 THR 84 239 239 THR THR A . n A 1 85 ALA 85 240 240 ALA ALA A . n A 1 86 LYS 86 241 241 LYS LYS A . n A 1 87 SER 87 242 242 SER SER A . n A 1 88 ARG 88 243 243 ARG ARG A . n A 1 89 GLU 89 244 244 GLU GLU A . n A 1 90 THR 90 245 245 THR THR A . n A 1 91 VAL 91 246 246 VAL VAL A . n A 1 92 ARG 92 247 247 ARG ARG A . n A 1 93 ASN 93 248 248 ASN ASN A . n A 1 94 LEU 94 249 249 LEU LEU A . n A 1 95 MET 95 250 250 MET MET A . n A 1 96 ALA 96 251 251 ALA ALA A . n A 1 97 ASN 97 252 252 ASN ASN A . n A 1 98 MET 98 253 253 MET MET A . n A 1 99 LEU 99 254 254 LEU LEU A . n A 1 100 ASN 100 255 255 ASN ASN A . n A 1 101 VAL 101 256 256 VAL VAL A . n A 1 102 ARG 102 257 257 ARG ARG A . n A 1 103 GLU 103 258 258 GLU GLU A . n A 1 104 GLU 104 259 259 GLU GLU A . n A 1 105 CYS 105 260 260 CYS CYS A . n A 1 106 LEU 106 261 261 LEU LEU A . n A 1 107 MET 107 262 262 MET MET A . n A 1 108 LEU 108 263 263 LEU LEU A . n A 1 109 GLN 109 264 264 GLN GLN A . n A 1 110 PRO 110 265 265 PRO PRO A . n A 1 111 PRO 111 266 266 PRO PRO A . n A 1 112 LYS 112 267 267 LYS LYS A . n A 1 113 ILE 113 268 268 ILE ILE A . n A 1 114 ARG 114 269 269 ARG ARG A . n A 1 115 GLY 115 270 270 GLY GLY A . n A 1 116 LEU 116 271 271 LEU LEU A . n A 1 117 SER 117 272 272 SER SER A . n A 1 118 ALA 118 273 273 ALA ALA A . n A 1 119 ALA 119 274 274 ALA ALA A . n A 1 120 LEU 120 275 275 LEU LEU A . n A 1 121 PHE 121 276 276 PHE PHE A . n A 1 122 TRP 122 277 277 TRP TRP A . n A 1 123 PHE 123 278 278 PHE PHE A . n A 1 124 LYS 124 279 279 LYS LYS A . n A 1 125 SER 125 280 280 SER SER A . n A 1 126 SER 126 281 281 SER SER A . n A 1 127 LEU 127 282 282 LEU LEU A . n A 1 128 SER 128 283 283 SER SER A . n A 1 129 PRO 129 284 284 PRO PRO A . n A 1 130 ALA 130 285 285 ALA ALA A . n A 1 131 THR 131 286 286 THR THR A . n A 1 132 LEU 132 287 287 LEU LEU A . n A 1 133 LYS 133 288 288 LYS LYS A . n A 1 134 HIS 134 289 289 HIS HIS A . n A 1 135 GLY 135 290 290 GLY GLY A . n A 1 136 ALA 136 291 291 ALA ALA A . n A 1 137 LEU 137 292 292 LEU LEU A . n A 1 138 PRO 138 293 293 PRO PRO A . n A 1 139 GLU 139 294 294 GLU GLU A . n A 1 140 TRP 140 295 295 TRP TRP A . n A 1 141 ILE 141 296 296 ILE ILE A . n A 1 142 ARG 142 297 297 ARG ARG A . n A 1 143 ALA 143 298 298 ALA ALA A . n A 1 144 GLN 144 299 299 GLN GLN A . n A 1 145 THR 145 300 300 THR THR A . n A 1 146 THR 146 301 301 THR THR A . n A 1 147 LEU 147 302 302 LEU LEU A . n A 1 148 ASN 148 303 303 ASN ASN A . n B 1 1 GLY 1 156 ? ? ? B . n B 1 2 SER 2 157 ? ? ? B . n B 1 3 ARG 3 158 ? ? ? B . n B 1 4 ALA 4 159 159 ALA ALA B . n B 1 5 THR 5 160 160 THR THR B . n B 1 6 VAL 6 161 161 VAL VAL B . n B 1 7 PHE 7 162 162 PHE PHE B . n B 1 8 LYS 8 163 163 LYS LYS B . n B 1 9 LEU 9 164 164 LEU LEU B . n B 1 10 GLY 10 165 165 GLY GLY B . n B 1 11 LEU 11 166 166 LEU LEU B . n B 1 12 PHE 12 167 167 PHE PHE B . n B 1 13 LYS 13 168 168 LYS LYS B . n B 1 14 SER 14 169 169 SER SER B . n B 1 15 LEU 15 170 170 LEU LEU B . n B 1 16 PHE 16 171 171 PHE PHE B . n B 1 17 LEU 17 172 172 LEU LEU B . n B 1 18 CYS 18 173 173 CYS CYS B . n B 1 19 SER 19 174 174 SER SER B . n B 1 20 PHE 20 175 175 PHE PHE B . n B 1 21 HIS 21 176 176 HIS HIS B . n B 1 22 ASP 22 177 177 ASP ASP B . n B 1 23 ILE 23 178 178 ILE ILE B . n B 1 24 THR 24 179 179 THR THR B . n B 1 25 ARG 25 180 180 ARG ARG B . n B 1 26 LEU 26 181 181 LEU LEU B . n B 1 27 PHE 27 182 182 PHE PHE B . n B 1 28 LYS 28 183 183 LYS LYS B . n B 1 29 ASN 29 184 184 ASN ASN B . n B 1 30 ASP 30 185 185 ASP ASP B . n B 1 31 LYS 31 186 186 LYS LYS B . n B 1 32 THR 32 187 187 THR THR B . n B 1 33 THR 33 188 188 THR THR B . n B 1 34 ASN 34 189 189 ASN ASN B . n B 1 35 GLN 35 190 190 GLN GLN B . n B 1 36 GLN 36 191 191 GLN GLN B . n B 1 37 TRP 37 192 192 TRP TRP B . n B 1 38 VAL 38 193 193 VAL VAL B . n B 1 39 LEU 39 194 194 LEU LEU B . n B 1 40 ALA 40 195 195 ALA ALA B . n B 1 41 VAL 41 196 196 VAL VAL B . n B 1 42 PHE 42 197 197 PHE PHE B . n B 1 43 GLY 43 198 198 GLY GLY B . n B 1 44 LEU 44 199 199 LEU LEU B . n B 1 45 ALA 45 200 200 ALA ALA B . n B 1 46 GLU 46 201 201 GLU GLU B . n B 1 47 VAL 47 202 202 VAL VAL B . n B 1 48 PHE 48 203 203 PHE PHE B . n B 1 49 PHE 49 204 204 PHE PHE B . n B 1 50 GLU 50 205 205 GLU GLU B . n B 1 51 ALA 51 206 206 ALA ALA B . n B 1 52 SER 52 207 207 SER SER B . n B 1 53 PHE 53 208 208 PHE PHE B . n B 1 54 GLU 54 209 209 GLU GLU B . n B 1 55 LEU 55 210 210 LEU LEU B . n B 1 56 LEU 56 211 211 LEU LEU B . n B 1 57 LYS 57 212 212 LYS LYS B . n B 1 58 LYS 58 213 213 LYS LYS B . n B 1 59 GLN 59 214 214 GLN GLN B . n B 1 60 CYS 60 215 215 CYS CYS B . n B 1 61 SER 61 216 216 SER SER B . n B 1 62 PHE 62 217 217 PHE PHE B . n B 1 63 LEU 63 218 218 LEU LEU B . n B 1 64 GLN 64 219 219 GLN GLN B . n B 1 65 MET 65 220 220 MET MET B . n B 1 66 GLN 66 221 221 GLN GLN B . n B 1 67 LYS 67 222 222 LYS LYS B . n B 1 68 ARG 68 223 223 ARG ARG B . n B 1 69 SER 69 224 224 SER SER B . n B 1 70 HIS 70 225 225 HIS HIS B . n B 1 71 GLU 71 226 226 GLU GLU B . n B 1 72 GLY 72 227 227 GLY GLY B . n B 1 73 GLY 73 228 228 GLY GLY B . n B 1 74 THR 74 229 229 THR THR B . n B 1 75 CYS 75 230 230 CYS CYS B . n B 1 76 ALA 76 231 231 ALA ALA B . n B 1 77 VAL 77 232 232 VAL VAL B . n B 1 78 TYR 78 233 233 TYR TYR B . n B 1 79 LEU 79 234 234 LEU LEU B . n B 1 80 ILE 80 235 235 ILE ILE B . n B 1 81 CYS 81 236 236 CYS CYS B . n B 1 82 PHE 82 237 237 PHE PHE B . n B 1 83 ASN 83 238 238 ASN ASN B . n B 1 84 THR 84 239 239 THR THR B . n B 1 85 ALA 85 240 240 ALA ALA B . n B 1 86 LYS 86 241 241 LYS LYS B . n B 1 87 SER 87 242 242 SER SER B . n B 1 88 ARG 88 243 243 ARG ARG B . n B 1 89 GLU 89 244 244 GLU GLU B . n B 1 90 THR 90 245 245 THR THR B . n B 1 91 VAL 91 246 246 VAL VAL B . n B 1 92 ARG 92 247 247 ARG ARG B . n B 1 93 ASN 93 248 248 ASN ASN B . n B 1 94 LEU 94 249 249 LEU LEU B . n B 1 95 MET 95 250 250 MET MET B . n B 1 96 ALA 96 251 251 ALA ALA B . n B 1 97 ASN 97 252 252 ASN ASN B . n B 1 98 MET 98 253 253 MET MET B . n B 1 99 LEU 99 254 254 LEU LEU B . n B 1 100 ASN 100 255 255 ASN ASN B . n B 1 101 VAL 101 256 256 VAL VAL B . n B 1 102 ARG 102 257 257 ARG ARG B . n B 1 103 GLU 103 258 258 GLU GLU B . n B 1 104 GLU 104 259 259 GLU GLU B . n B 1 105 CYS 105 260 260 CYS CYS B . n B 1 106 LEU 106 261 261 LEU LEU B . n B 1 107 MET 107 262 262 MET MET B . n B 1 108 LEU 108 263 263 LEU LEU B . n B 1 109 GLN 109 264 264 GLN GLN B . n B 1 110 PRO 110 265 265 PRO PRO B . n B 1 111 PRO 111 266 266 PRO PRO B . n B 1 112 LYS 112 267 267 LYS LYS B . n B 1 113 ILE 113 268 268 ILE ILE B . n B 1 114 ARG 114 269 269 ARG ARG B . n B 1 115 GLY 115 270 270 GLY GLY B . n B 1 116 LEU 116 271 271 LEU LEU B . n B 1 117 SER 117 272 272 SER SER B . n B 1 118 ALA 118 273 273 ALA ALA B . n B 1 119 ALA 119 274 274 ALA ALA B . n B 1 120 LEU 120 275 275 LEU LEU B . n B 1 121 PHE 121 276 276 PHE PHE B . n B 1 122 TRP 122 277 277 TRP TRP B . n B 1 123 PHE 123 278 278 PHE PHE B . n B 1 124 LYS 124 279 279 LYS LYS B . n B 1 125 SER 125 280 280 SER SER B . n B 1 126 SER 126 281 281 SER SER B . n B 1 127 LEU 127 282 282 LEU LEU B . n B 1 128 SER 128 283 283 SER SER B . n B 1 129 PRO 129 284 284 PRO PRO B . n B 1 130 ALA 130 285 285 ALA ALA B . n B 1 131 THR 131 286 286 THR THR B . n B 1 132 LEU 132 287 287 LEU LEU B . n B 1 133 LYS 133 288 288 LYS LYS B . n B 1 134 HIS 134 289 289 HIS HIS B . n B 1 135 GLY 135 290 290 GLY GLY B . n B 1 136 ALA 136 291 291 ALA ALA B . n B 1 137 LEU 137 292 292 LEU LEU B . n B 1 138 PRO 138 293 293 PRO PRO B . n B 1 139 GLU 139 294 294 GLU GLU B . n B 1 140 TRP 140 295 295 TRP TRP B . n B 1 141 ILE 141 296 296 ILE ILE B . n B 1 142 ARG 142 297 297 ARG ARG B . n B 1 143 ALA 143 298 298 ALA ALA B . n B 1 144 GLN 144 299 299 GLN GLN B . n B 1 145 THR 145 300 300 THR THR B . n B 1 146 THR 146 301 301 THR THR B . n B 1 147 LEU 147 302 302 LEU LEU B . n B 1 148 ASN 148 303 303 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BR 1 501 1 BR BR A . D 2 BR 1 502 2 BR BR A . E 2 BR 1 503 3 BR BR A . F 2 BR 1 504 4 BR BR A . G 2 BR 1 505 5 BR BR A . H 2 BR 1 506 6 BR BR A . I 2 BR 1 507 7 BR BR A . J 2 BR 1 508 8 BR BR A . K 2 BR 1 510 10 BR BR A . L 2 BR 1 511 11 BR BR A . M 2 BR 1 512 12 BR BR A . N 2 BR 1 513 13 BR BR A . O 2 BR 1 514 14 BR BR A . P 2 BR 1 509 9 BR BR B . Q 3 HOH 1 4 4 HOH WAT A . Q 3 HOH 2 5 5 HOH WAT A . Q 3 HOH 3 7 7 HOH WAT A . Q 3 HOH 4 9 9 HOH WAT A . Q 3 HOH 5 11 11 HOH WAT A . Q 3 HOH 6 12 12 HOH WAT A . Q 3 HOH 7 13 13 HOH WAT A . Q 3 HOH 8 17 17 HOH WAT A . Q 3 HOH 9 20 20 HOH WAT A . Q 3 HOH 10 21 21 HOH WAT A . Q 3 HOH 11 22 22 HOH WAT A . Q 3 HOH 12 23 23 HOH WAT A . Q 3 HOH 13 29 29 HOH WAT A . Q 3 HOH 14 30 30 HOH WAT A . Q 3 HOH 15 31 31 HOH WAT A . Q 3 HOH 16 32 32 HOH WAT A . Q 3 HOH 17 33 33 HOH WAT A . Q 3 HOH 18 36 36 HOH WAT A . Q 3 HOH 19 37 37 HOH WAT A . Q 3 HOH 20 38 38 HOH WAT A . Q 3 HOH 21 39 39 HOH WAT A . Q 3 HOH 22 40 40 HOH WAT A . Q 3 HOH 23 41 41 HOH WAT A . Q 3 HOH 24 46 46 HOH WAT A . Q 3 HOH 25 49 49 HOH WAT A . Q 3 HOH 26 50 50 HOH WAT A . Q 3 HOH 27 52 52 HOH WAT A . Q 3 HOH 28 53 53 HOH WAT A . Q 3 HOH 29 56 56 HOH WAT A . Q 3 HOH 30 58 58 HOH WAT A . Q 3 HOH 31 60 60 HOH WAT A . Q 3 HOH 32 63 63 HOH WAT A . Q 3 HOH 33 69 69 HOH WAT A . Q 3 HOH 34 73 73 HOH WAT A . Q 3 HOH 35 76 76 HOH WAT A . Q 3 HOH 36 80 80 HOH WAT A . Q 3 HOH 37 84 84 HOH WAT A . Q 3 HOH 38 85 85 HOH WAT A . Q 3 HOH 39 88 88 HOH WAT A . Q 3 HOH 40 89 89 HOH WAT A . Q 3 HOH 41 90 90 HOH WAT A . Q 3 HOH 42 91 91 HOH WAT A . Q 3 HOH 43 92 92 HOH WAT A . Q 3 HOH 44 93 93 HOH WAT A . Q 3 HOH 45 99 99 HOH WAT A . R 3 HOH 1 1 1 HOH WAT B . R 3 HOH 2 2 2 HOH WAT B . R 3 HOH 3 3 3 HOH WAT B . R 3 HOH 4 6 6 HOH WAT B . R 3 HOH 5 8 8 HOH WAT B . R 3 HOH 6 10 10 HOH WAT B . R 3 HOH 7 14 14 HOH WAT B . R 3 HOH 8 15 15 HOH WAT B . R 3 HOH 9 16 16 HOH WAT B . R 3 HOH 10 18 18 HOH WAT B . R 3 HOH 11 19 19 HOH WAT B . R 3 HOH 12 24 24 HOH WAT B . R 3 HOH 13 25 25 HOH WAT B . R 3 HOH 14 26 26 HOH WAT B . R 3 HOH 15 27 27 HOH WAT B . R 3 HOH 16 28 28 HOH WAT B . R 3 HOH 17 34 34 HOH WAT B . R 3 HOH 18 35 35 HOH WAT B . R 3 HOH 19 42 42 HOH WAT B . R 3 HOH 20 43 43 HOH WAT B . R 3 HOH 21 44 44 HOH WAT B . R 3 HOH 22 45 45 HOH WAT B . R 3 HOH 23 47 47 HOH WAT B . R 3 HOH 24 48 48 HOH WAT B . R 3 HOH 25 51 51 HOH WAT B . R 3 HOH 26 54 54 HOH WAT B . R 3 HOH 27 55 55 HOH WAT B . R 3 HOH 28 57 57 HOH WAT B . R 3 HOH 29 59 59 HOH WAT B . R 3 HOH 30 61 61 HOH WAT B . R 3 HOH 31 62 62 HOH WAT B . R 3 HOH 32 64 64 HOH WAT B . R 3 HOH 33 65 65 HOH WAT B . R 3 HOH 34 66 66 HOH WAT B . R 3 HOH 35 67 67 HOH WAT B . R 3 HOH 36 68 68 HOH WAT B . R 3 HOH 37 70 70 HOH WAT B . R 3 HOH 38 71 71 HOH WAT B . R 3 HOH 39 72 72 HOH WAT B . R 3 HOH 40 74 74 HOH WAT B . R 3 HOH 41 75 75 HOH WAT B . R 3 HOH 42 77 77 HOH WAT B . R 3 HOH 43 78 78 HOH WAT B . R 3 HOH 44 79 79 HOH WAT B . R 3 HOH 45 81 81 HOH WAT B . R 3 HOH 46 82 82 HOH WAT B . R 3 HOH 47 83 83 HOH WAT B . R 3 HOH 48 86 86 HOH WAT B . R 3 HOH 49 87 87 HOH WAT B . R 3 HOH 50 94 94 HOH WAT B . R 3 HOH 51 95 95 HOH WAT B . R 3 HOH 52 96 96 HOH WAT B . R 3 HOH 53 97 97 HOH WAT B . R 3 HOH 54 98 98 HOH WAT B . R 3 HOH 55 100 100 HOH WAT B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ASN 303 ? CA ? A ASN 148 CA 2 1 Y 0 A ASN 303 ? C ? A ASN 148 C 3 1 Y 0 A ASN 303 ? O ? A ASN 148 O 4 1 Y 0 A ASN 303 ? CB ? A ASN 148 CB 5 1 Y 0 A ASN 303 ? CG ? A ASN 148 CG 6 1 Y 0 A ASN 303 ? OD1 ? A ASN 148 OD1 7 1 Y 0 A ASN 303 ? ND2 ? A ASN 148 ND2 8 1 Y 0 B ASN 303 ? CA ? B ASN 148 CA 9 1 Y 0 B ASN 303 ? C ? B ASN 148 C 10 1 Y 0 B ASN 303 ? O ? B ASN 148 O 11 1 Y 0 B ASN 303 ? CB ? B ASN 148 CB 12 1 Y 0 B ASN 303 ? CG ? B ASN 148 CG 13 1 Y 0 B ASN 303 ? OD1 ? B ASN 148 OD1 14 1 Y 0 B ASN 303 ? ND2 ? B ASN 148 ND2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SnB phasing . ? 1 SHARP phasing . ? 2 CNS refinement . ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 1F08 _cell.length_a 42.170 _cell.length_b 84.897 _cell.length_c 124.276 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F08 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1F08 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 63.4 _exptl_crystal.density_Matthews 3.36 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100 mM MES, pH 6.5, NaBr or NaCl, 8 mg/mL protein, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH 1999-10-26 ? 2 CCD MARRESEARCH 1999-05-31 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 ? M 'SINGLE WAVELENGTH' x-ray 2 2 ? M MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.100 1.0 2 0.979 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'NSLS BEAMLINE X26C' 1.100 NSLS X26C ? 2 SYNCHROTRON 'NSLS BEAMLINE X8C' 0.979 NSLS X8C ? # _reflns.entry_id 1F08 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.90 _reflns.number_obs 35804 _reflns.number_all 36016 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.0870000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.9 _reflns.B_iso_Wilson_estimate 17.6 _reflns.pdbx_redundancy 9.28 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 96.4 _reflns_shell.Rmerge_I_obs 0.4180000 _reflns_shell.meanI_over_sigI_obs 4.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 6.05 _reflns_shell.number_unique_all 3500 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1F08 _refine.ls_number_reflns_obs 33605 _refine.ls_number_reflns_all 33605 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 25.0 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 93.3 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2410000 _refine.ls_R_factor_R_free 0.2710000 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1668 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 28.4 _refine.aniso_B[1][1] 2.560 _refine.aniso_B[2][2] -13.397 _refine.aniso_B[3][3] 10.837 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'flat model' _refine.solvent_model_param_ksol 0.347299 _refine.solvent_model_param_bsol 50.5091 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF 368558.09 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1F08 _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 0.19 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.30 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2349 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 2463 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 25.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.61 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.93 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.226 1.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.070 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.787 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.750 2.5 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.R_factor_R_free 0.3370000 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.R_factor_R_work 0.3010000 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.97 _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.number_reflns_R_free 149 _refine_ls_shell.number_reflns_R_work 2621 _refine_ls_shell.percent_reflns_R_free 5.4 _refine_ls_shell.percent_reflns_obs 78.5 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1F08 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1F08 _struct.title 'CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF THE REPLICATION INITIATION PROTEIN E1 FROM PAPILLOMAVIRUS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1F08 _struct_keywords.pdbx_keywords REPLICATION _struct_keywords.text 'Papillomavirus, DNA-binding domain, replication, initiator protein, helicase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 3 ? R N N 3 ? # _struct_ref.id 1 _struct_ref.db_code VE1_BPV1 _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P03116 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1F08 A 4 ? 148 ? P03116 159 ? 303 ? 159 303 2 1 1F08 B 4 ? 148 ? P03116 159 ? 303 ? 159 303 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1F08 GLY A 1 ? UNP P03116 ? ? 'cloning artifact' 156 1 1 1F08 SER A 2 ? UNP P03116 ? ? 'cloning artifact' 157 2 1 1F08 ARG A 3 ? UNP P03116 ? ? 'cloning artifact' 158 3 1 1F08 MET A 98 ? UNP P03116 THR 253 'SEE REMARK 999' 253 4 1 1F08 PRO A 111 ? UNP P03116 ALA 266 'SEE REMARK 999' 266 5 2 1F08 GLY B 1 ? UNP P03116 ? ? 'cloning artifact' 156 6 2 1F08 SER B 2 ? UNP P03116 ? ? 'cloning artifact' 157 7 2 1F08 ARG B 3 ? UNP P03116 ? ? 'cloning artifact' 158 8 2 1F08 MET B 98 ? UNP P03116 THR 253 'SEE REMARK 999' 253 9 2 1F08 PRO B 111 ? UNP P03116 ALA 266 'SEE REMARK 999' 266 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ;In the absence of DNA, the protein is monomeric in solution. In the presence of DNA, the biologically relevant oligomerization state is a dimer. In this entry the two chains are in the the correct DNA-binding dimeric orientation. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 6 ? LEU A 17 ? VAL A 161 LEU A 172 1 ? 12 HELX_P HELX_P2 2 SER A 19 ? ILE A 23 ? SER A 174 ILE A 178 5 ? 5 HELX_P HELX_P3 3 GLU A 46 ? GLN A 59 ? GLU A 201 GLN A 214 1 ? 14 HELX_P HELX_P4 4 SER A 87 ? LEU A 99 ? SER A 242 LEU A 254 1 ? 13 HELX_P HELX_P5 5 ARG A 102 ? GLU A 104 ? ARG A 257 GLU A 259 5 ? 3 HELX_P HELX_P6 6 SER A 117 ? SER A 128 ? SER A 272 SER A 283 1 ? 12 HELX_P HELX_P7 7 GLU A 139 ? THR A 145 ? GLU A 294 THR A 300 1 ? 7 HELX_P HELX_P8 8 VAL B 6 ? LEU B 17 ? VAL B 161 LEU B 172 1 ? 12 HELX_P HELX_P9 9 SER B 19 ? ILE B 23 ? SER B 174 ILE B 178 5 ? 5 HELX_P HELX_P10 10 GLU B 46 ? GLN B 59 ? GLU B 201 GLN B 214 1 ? 14 HELX_P HELX_P11 11 SER B 87 ? LEU B 99 ? SER B 242 LEU B 254 1 ? 13 HELX_P HELX_P12 12 ARG B 102 ? GLU B 104 ? ARG B 257 GLU B 259 5 ? 3 HELX_P HELX_P13 13 SER B 117 ? SER B 128 ? SER B 272 SER B 283 1 ? 12 HELX_P HELX_P14 14 GLU B 139 ? THR B 145 ? GLU B 294 THR B 300 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 105 ? GLN A 109 ? CYS A 260 GLN A 264 A 2 GLN A 35 ? PHE A 42 ? GLN A 190 PHE A 197 A 3 GLY A 73 ? THR A 84 ? GLY A 228 THR A 239 A 4 SER A 61 ? GLU A 71 ? SER A 216 GLU A 226 A 5 LEU A 132 ? GLY A 135 ? LEU A 287 GLY A 290 B 1 CYS B 105 ? GLN B 109 ? CYS B 260 GLN B 264 B 2 GLN B 35 ? PHE B 42 ? GLN B 190 PHE B 197 B 3 GLY B 73 ? THR B 84 ? GLY B 228 THR B 239 B 4 CYS B 60 ? GLU B 71 ? CYS B 215 GLU B 226 B 5 LEU B 132 ? GLY B 135 ? LEU B 287 GLY B 290 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 109 ? O GLN A 264 N VAL A 38 ? N VAL A 193 A 2 3 O VAL A 41 ? O VAL A 196 N ALA A 76 ? N ALA A 231 A 3 4 O CYS A 81 ? O CYS A 236 N SER A 61 ? N SER A 216 A 4 5 O MET A 65 ? O MET A 220 N LEU A 132 ? N LEU A 287 B 1 2 O GLN B 109 ? O GLN B 264 N VAL B 38 ? N VAL B 193 B 2 3 N VAL B 41 ? N VAL B 196 O ALA B 76 ? O ALA B 231 B 3 4 O CYS B 81 ? O CYS B 236 N SER B 61 ? N SER B 216 B 4 5 O MET B 65 ? O MET B 220 N LEU B 132 ? N LEU B 287 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BR 501 ? 3 'BINDING SITE FOR RESIDUE BR A 501' AC2 Software A BR 502 ? 4 'BINDING SITE FOR RESIDUE BR A 502' AC3 Software A BR 503 ? 2 'BINDING SITE FOR RESIDUE BR A 503' AC4 Software A BR 504 ? 3 'BINDING SITE FOR RESIDUE BR A 504' AC5 Software A BR 505 ? 1 'BINDING SITE FOR RESIDUE BR A 505' AC6 Software A BR 506 ? 2 'BINDING SITE FOR RESIDUE BR A 506' AC7 Software A BR 507 ? 4 'BINDING SITE FOR RESIDUE BR A 507' AC8 Software A BR 508 ? 2 'BINDING SITE FOR RESIDUE BR A 508' AC9 Software B BR 509 ? 2 'BINDING SITE FOR RESIDUE BR B 509' BC1 Software A BR 511 ? 2 'BINDING SITE FOR RESIDUE BR A 511' BC2 Software A BR 512 ? 2 'BINDING SITE FOR RESIDUE BR A 512' BC3 Software A BR 513 ? 1 'BINDING SITE FOR RESIDUE BR A 513' BC4 Software A BR 514 ? 1 'BINDING SITE FOR RESIDUE BR A 514' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ARG A 25 ? ARG A 180 . ? 1_555 ? 2 AC1 3 ILE B 113 ? ILE B 268 . ? 2_464 ? 3 AC1 3 ARG B 114 ? ARG B 269 . ? 2_464 ? 4 AC2 4 LYS A 112 ? LYS A 267 . ? 1_555 ? 5 AC2 4 LYS B 28 ? LYS B 183 . ? 2_464 ? 6 AC2 4 ASN B 29 ? ASN B 184 . ? 2_464 ? 7 AC2 4 THR B 32 ? THR B 187 . ? 2_464 ? 8 AC3 2 ARG A 25 ? ARG A 180 . ? 1_555 ? 9 AC3 2 ASN A 34 ? ASN A 189 . ? 1_555 ? 10 AC4 3 SER A 2 ? SER A 157 . ? 1_555 ? 11 AC4 3 ARG A 92 ? ARG A 247 . ? 1_555 ? 12 AC4 3 LEU A 108 ? LEU A 263 . ? 1_555 ? 13 AC5 1 SER A 19 ? SER A 174 . ? 1_555 ? 14 AC6 2 ILE A 113 ? ILE A 268 . ? 1_555 ? 15 AC6 2 ARG B 25 ? ARG B 180 . ? 2_464 ? 16 AC7 4 LYS A 28 ? LYS A 183 . ? 1_555 ? 17 AC7 4 ASN A 29 ? ASN A 184 . ? 1_555 ? 18 AC7 4 THR A 32 ? THR A 187 . ? 1_555 ? 19 AC7 4 LYS B 112 ? LYS B 267 . ? 2_464 ? 20 AC8 2 ARG B 25 ? ARG B 180 . ? 2_464 ? 21 AC8 2 ASN B 34 ? ASN B 189 . ? 2_464 ? 22 AC9 2 ARG B 92 ? ARG B 247 . ? 1_555 ? 23 AC9 2 LEU B 108 ? LEU B 263 . ? 1_555 ? 24 BC1 2 LEU A 26 ? LEU A 181 . ? 1_555 ? 25 BC1 2 LEU B 26 ? LEU B 181 . ? 2_464 ? 26 BC2 2 GLY A 43 ? GLY A 198 . ? 1_555 ? 27 BC2 2 THR A 74 ? THR A 229 . ? 1_555 ? 28 BC3 1 GLN A 36 ? GLN A 191 . ? 1_555 ? 29 BC4 1 GLN B 36 ? GLN B 191 . ? 2_464 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 157 ? ? 71.72 86.74 2 1 ARG A 158 ? ? -71.39 -71.32 3 1 LEU A 302 ? ? 106.87 60.19 4 1 GLU B 226 ? ? -49.36 -14.89 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 156 ? B GLY 1 2 1 Y 1 B SER 157 ? B SER 2 3 1 Y 1 B ARG 158 ? B ARG 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BR BR BR N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 1F08 _atom_sites.fract_transf_matrix[1][1] 0.023714 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011779 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008047 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_